BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00000893
         (2055 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   622   e-175
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   621   e-175
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   602   e-169
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   600   e-168
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   570   e-159
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              570   e-159
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   546   e-152
ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF,...   544   e-151
ref|XP_012485937.1| PREDICTED: RNA polymerase sigma factor sigF,...   544   e-151
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,...   542   e-151
gb|KHG01807.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   537   e-149
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   534   e-148
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   532   e-148
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   531   e-148
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   531   e-148
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   531   e-147
ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,...   530   e-147
ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF,...   529   e-147
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   528   e-147
gb|KDO48074.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   528   e-147

>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  622 bits (1605), Expect = e-175
 Identities = 343/570 (60%), Positives = 423/570 (74%), Gaps = 10/570 (1%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQ 1733
            ME GRNL+SS    P + QL+N+   SV +LHE              TRHFPASVL QEQ
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKNSSS-SVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQ 59

Query: 1732 RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 1556
            RDD+R  L + RE+K  QA LDR ++++   L +EKK   S   D+Y + FERQLLY PG
Sbjct: 60   RDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKK---SCQPDRYWEGFERQLLYWPG 116

Query: 1555 LWYLSAPS--QRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVD- 1385
            LWYL  PS  + E   LS+  QS ++   + + V+  D L LAK+AVL SKQAASL  D 
Sbjct: 117  LWYL-LPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDY 175

Query: 1384 ----SNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISS 1217
                ++SH     +L P    N I P  +E  VRS RLLERQSK+R  P+  ++  E S+
Sbjct: 176  ELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWIPRPKVVVSEAST 234

Query: 1216 LRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQS 1040
             R +D H K     D +DPLRLFL G E +QLLT KEE ELF+ VQEL RLEEVKQRLQS
Sbjct: 235  SRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQS 294

Query: 1039 QFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQD 860
            QFDREPT+VEWAEAVGM+C +LQ  LHSG+ SREK+IY+NFR+VVHVAK+YQG+G+NLQD
Sbjct: 295  QFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQD 354

Query: 859  LLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQV 680
            LLQEGS GL+KSLEKFKP AGCRF+TYAYWWIRQ++RKAIF +S++IRLPENVY+ L QV
Sbjct: 355  LLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQV 414

Query: 679  KNAKEVLIKEGHQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTA 500
            K AK++ I+EGH PTNEE+AK+VG TV KLERL ++T+ PLS+Q+P+W+DQ TTFQ +TA
Sbjct: 415  KKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITA 474

Query: 499  DPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSK 320
            D +VE P+  V+K LMRRHVRNL+S+LPPKE+RIIR+RYGIE+ E KSL +IG +FGLSK
Sbjct: 475  DTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSK 534

Query: 319  ERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            ERVRQLE+RAL KL+ CLSSQGL AY +LL
Sbjct: 535  ERVRQLESRALHKLKQCLSSQGLGAYADLL 564


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  621 bits (1601), Expect = e-175
 Identities = 342/572 (59%), Positives = 423/572 (73%), Gaps = 12/572 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHP--LSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-Q 1739
            ME GRNL+SS    P + QL+N+    + V +LHE              TRHFPASVL Q
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKNSSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLLQ 60

Query: 1738 EQRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYS 1562
            EQRDD+R  L + RE+K  QA LDR ++++   L +EKK   S   D+Y + FERQLLY 
Sbjct: 61   EQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKK---SCQPDRYWEGFERQLLYW 117

Query: 1561 PGLWYLSAPS--QRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIV 1388
            PGLWYL  PS  + E   LS+  QS ++   + + V+  D L LAK+AVL SKQAASL  
Sbjct: 118  PGLWYL-LPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAK 176

Query: 1387 D-----SNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEI 1223
            D     ++SH     +L P    N I P  +E  VRS RLLERQSK+R  P+  ++  E 
Sbjct: 177  DYELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWIPRPKVVVSEA 235

Query: 1222 SSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRL 1046
            S+ R +D H K     D +DPLRLFL G E +QLLT KEE ELF+ VQEL RLEEVKQRL
Sbjct: 236  STSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRL 295

Query: 1045 QSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNL 866
            QSQFDREPT+VEWAEAVGM+C +LQ  LHSG+ SREK+IY+NFR+VVHVAK+YQG+G+NL
Sbjct: 296  QSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNL 355

Query: 865  QDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALR 686
            QDLLQEGS GL+KSLEKFKP AGCRF+TYAYWWIRQ++RKAIF +S++IRLPENVY+ L 
Sbjct: 356  QDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLS 415

Query: 685  QVKNAKEVLIKEGHQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAV 506
            QVK AK++ I+EGH PTNEE+AK+VG TV KLERL ++T+ PLS+Q+P+W+DQ TTFQ +
Sbjct: 416  QVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEI 475

Query: 505  TADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGL 326
            TAD +VE P+  V+K LMRRHVRNL+S+LPPKE+RIIR+RYGIE+ E KSL +IG +FGL
Sbjct: 476  TADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGL 535

Query: 325  SKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            SKERVRQLE+RAL KL+ CLSSQGL AY +LL
Sbjct: 536  SKERVRQLESRALHKLKQCLSSQGLGAYADLL 567


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  602 bits (1553), Expect = e-169
 Identities = 330/543 (60%), Positives = 406/543 (74%), Gaps = 10/543 (1%)
 Frame = -3

Query: 1828 VAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDDLRSLLHL-REEKPHQAALDRTQID 1655
            V +LHE              TRHFPASVL QEQRDD+R  L + RE+K  QA LDR +++
Sbjct: 2    VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 1654 NDTSLNQEKKEHGSESSDKYLKDFERQLLYSPGLWYLSAPS--QRENKALSLDMQSMSSD 1481
            +   L +EKK   S   D+Y + FERQLLY PGLWYL  PS  + E   LS+  QS ++ 
Sbjct: 62   DKVHLYEEKK---SCQPDRYWEGFERQLLYWPGLWYL-LPSLYKGEKPLLSMVTQSTAAG 117

Query: 1480 ADEELHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSHLPNADELIPSFGMNDISPP 1316
              + + V+  D L LAK+AVL SKQAASL  D     ++SH     +L P    N I P 
Sbjct: 118  TVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PL 176

Query: 1315 EKEKIVRSTRLLERQSKKRRAPKSALLGDEISSLRTTDRHHKTSL-IDLSDPLRLFLSGA 1139
             +E  VRS RLLERQSK+R  P+  ++  E S+ R +D H K     D +DPLRLFL G 
Sbjct: 177  REEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGP 236

Query: 1138 EARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQFDREPTVVEWAEAVGMSCATLQLHLH 959
            E +QLLT KEE ELF+ VQEL RLEEVKQRLQSQFDREPT+VEWAEAVGM+C +LQ  LH
Sbjct: 237  ETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILH 296

Query: 958  SGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTY 779
            SG+ SREK+IY+NFR+VVHVAK+YQG+G+NLQDLLQEGS GL+KSLEKFKP AGCRF+TY
Sbjct: 297  SGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATY 356

Query: 778  AYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKNAKEVLIKEGHQPTNEEIAKQVGFTV 599
            AYWWIRQ++RKAIF +S++IRLPENVY+ L QVK AK++ I+EGH PTNEE+AK+VG TV
Sbjct: 357  AYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITV 416

Query: 598  GKLERLLITTKTPLSMQRPIWSDQATTFQAVTADPKVETPEQGVSKDLMRRHVRNLLSVL 419
             KLERL ++T+ PLS+Q+P+W+DQ TTFQ +TAD +VE P+  V+K LMRRHVRNL+S+L
Sbjct: 417  EKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISIL 476

Query: 418  PPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKERVRQLENRALDKLRNCLSSQGLEAYT 239
            PPKE+RIIR+RYGIE+ E KSL +IG +FGLSKERVRQLE+RAL KL+ CLSSQGL AY 
Sbjct: 477  PPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYA 536

Query: 238  NLL 230
            +LL
Sbjct: 537  DLL 539


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  600 bits (1546), Expect = e-168
 Identities = 325/522 (62%), Positives = 400/522 (76%), Gaps = 10/522 (1%)
 Frame = -3

Query: 1765 RHFPASVL-QEQRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYL 1592
            RHFPASVL QEQRDD+R  L + RE+K  QA LDR ++++   L +EKK   S   D+Y 
Sbjct: 8    RHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKK---SCQPDRYW 64

Query: 1591 KDFERQLLYSPGLWYLSAPS--QRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVL 1418
            + FERQLLY PGLWYL  PS  + E   LS+  QS ++   + + V+  D L LAK+AVL
Sbjct: 65   EGFERQLLYWPGLWYL-LPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVL 123

Query: 1417 VSKQAASLIVD-----SNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRA 1253
             SKQAASL  D     ++SH     +L P    N I P  +E  VRS RLLERQSK+R  
Sbjct: 124  ASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWI 182

Query: 1252 PKSALLGDEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQEL 1076
            P+  ++  E S+ R +D H K     D +DPLRLFL G E +QLLT KEE ELF+ VQEL
Sbjct: 183  PRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQEL 242

Query: 1075 TRLEEVKQRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVA 896
             RLEEVKQRLQSQFDREPT+VEWAEAVGM+C +LQ  LHSG+ SREK+IY+NFR+VVHVA
Sbjct: 243  IRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVA 302

Query: 895  KNYQGKGMNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIR 716
            K+YQG+G+NLQDLLQEGS GL+KSLEKFKP AGCRF+TYAYWWIRQ++RKAIF +S++IR
Sbjct: 303  KHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIR 362

Query: 715  LPENVYNALRQVKNAKEVLIKEGHQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIW 536
            LPENVY+ L QVK AK++ I+EGH PTNEE+AK+VG TV KLERL ++T+ PLS+Q+P+W
Sbjct: 363  LPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVW 422

Query: 535  SDQATTFQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKS 356
            +DQ TTFQ +TAD +VE P+  V+K LMRRHVRNL+S+LPPKE+RIIR+RYGIE+ E KS
Sbjct: 423  ADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKS 482

Query: 355  LAQIGDVFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            L +IG +FGLSKERVRQLE+RAL KL+ CLSSQGL AY +LL
Sbjct: 483  LQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLL 524


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  570 bits (1470), Expect = e-159
 Identities = 321/571 (56%), Positives = 407/571 (71%), Gaps = 9/571 (1%)
 Frame = -3

Query: 1915 TTMEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-Q 1739
            ++MEAG N+LSS P  P +   RN+   SV +LH+               R FP SVL Q
Sbjct: 5    SSMEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIA-RKFPTSVLLQ 62

Query: 1738 EQRDDLRSLLH-LREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYS 1562
            EQRD+ R     L++E+  QA L++ Q++   S ++E     S+  ++Y+ +FERQLL  
Sbjct: 63   EQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEEN----SDDHNQYMVNFERQLLLQ 118

Query: 1561 PGLWYLSAPSQRENKA--LSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIV 1388
            PGLWY    SQ   K+   S  M+S+++D +  + VK  D+LALAK+A+  SKQA SL  
Sbjct: 119  PGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY- 177

Query: 1387 DSNSHLPNAD-ELIPSFGMNDISPPE---KEKIVRSTRLLERQSKKRRAPKSALLGDEIS 1220
              N+ L  AD E  PS  +  IS P    +EK VRSTRLLER+SKKRR PK A+  +   
Sbjct: 178  -ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV-HENHG 235

Query: 1219 SLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQS 1040
            S R   +       D  DPLRLFL G E R+LLTAKEE EL +Q+QEL RLEEVK+RLQS
Sbjct: 236  SRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQS 295

Query: 1039 QFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQD 860
               REPTVVEWAEAVG+SC  LQ  LHSG+RSR+K+IY+N RMVVH+AK YQG+G+NLQD
Sbjct: 296  HLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQD 355

Query: 859  LLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQV 680
            LLQEGS GL+ S+EKFKP+AGCRF++YAYWWIRQ+VRKAIF HS++IRLPEN+Y+ L +V
Sbjct: 356  LLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKV 415

Query: 679  KNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVT 503
            K AK + I+EG H PT EEIA++VG T+ KL+RLL+ T+ PLSMQ+P+W+DQ TTFQ VT
Sbjct: 416  KEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVT 475

Query: 502  ADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLS 323
            AD  +E P+  V+K LMR+HVRNLL VL PKE+RIIRLR+GI DG  ++L++IG VFG S
Sbjct: 476  ADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFS 535

Query: 322  KERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            KERVRQLE RAL KL+ CLSS GLE+YT+LL
Sbjct: 536  KERVRQLEQRALHKLKQCLSSHGLESYTDLL 566


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  570 bits (1468), Expect = e-159
 Identities = 321/569 (56%), Positives = 405/569 (71%), Gaps = 9/569 (1%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQ 1733
            MEAG N+LSS P  P +   RN+   SV +LH+               R FP SVL QEQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIA-RKFPTSVLLQEQ 58

Query: 1732 RDDLRSLLH-LREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 1556
            RD+ R     L++E+  QA L++ Q++   S ++E     S+  ++Y+ +FERQLL  PG
Sbjct: 59   RDEYRPFPQALKDERTFQATLEKRQMEIVVSADEEN----SDDHNQYMVNFERQLLLQPG 114

Query: 1555 LWYLSAPSQRENKA--LSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVDS 1382
            LWY    SQ   K+   S  M+S+++D +  + VK  D+LALAK+A+  SKQA SL    
Sbjct: 115  LWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY--E 172

Query: 1381 NSHLPNAD-ELIPSFGMNDISPPE---KEKIVRSTRLLERQSKKRRAPKSALLGDEISSL 1214
            N+ L  AD E  PS  +  IS P    +EK VRSTRLLER+SKKRR PK A+  +   S 
Sbjct: 173  NAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV-HENHGSR 231

Query: 1213 RTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQF 1034
            R   +       D  DPLRLFL G E R+LLTAKEE EL +Q+QEL RLEEVK+RLQS  
Sbjct: 232  RAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHL 291

Query: 1033 DREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLL 854
             REPTVVEWAEAVG+SC  LQ  LHSG+RSR+K+IY+N RMVVH+AK YQG+G+NLQDLL
Sbjct: 292  KREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLL 351

Query: 853  QEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKN 674
            QEGS GL+ S+EKFKP+AGCRF++YAYWWIRQ+VRKAIF HS++IRLPEN+Y+ L +VK 
Sbjct: 352  QEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKE 411

Query: 673  AKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTAD 497
            AK + I+EG H PT EEIA++VG T+ KL+RLL+ T+ PLSMQ+P+W+DQ TTFQ VTAD
Sbjct: 412  AKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTAD 471

Query: 496  PKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKE 317
              +E P+  V+K LMR+HVRNLL VL PKE+RIIRLR+GI DG  ++L++IG VFG SKE
Sbjct: 472  TGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKE 531

Query: 316  RVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            RVRQLE RAL KL+ CLSS GLE+YT+LL
Sbjct: 532  RVRQLEQRALHKLKQCLSSHGLESYTDLL 560


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  546 bits (1406), Expect = e-152
 Identities = 300/566 (53%), Positives = 400/566 (70%), Gaps = 6/566 (1%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQ 1733
            MEAGR LLSS P  P++  L+N+   SV +L E               +HFP SVL QEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQ 60

Query: 1732 RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 1556
            RD+ R L ++ +E++P QA LDR + +  TS ++ K    S+  D+ +++FE QL + P 
Sbjct: 61   RDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKD---SDELDQMVENFEYQLHHWPT 117

Query: 1555 LWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVDSN 1379
             W L  PSQ+ +N ++S   QS++   D+ + V+  D++ LAK+A+  SK AA L  D++
Sbjct: 118  YWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFL-ADNS 176

Query: 1378 SHLPN-ADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISSLRTTD 1202
            + L N A     SF + ++      +IVRS R L RQS  RR PK+  +  E    ++ D
Sbjct: 177  TDLDNLASTSSSSFSLEEV------RIVRSRRHLARQSLNRRVPKTKDMIFETYDSKSAD 230

Query: 1201 RHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQFDRE 1025
               + S   D +DPLRLFL G E +QLLTAKEE EL  Q+Q+L  LE VK RL+SQF RE
Sbjct: 231  VQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGRE 290

Query: 1024 PTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLLQEG 845
            PT+VEWA+AVG+SC+ L+L LHSG+RSREK+I +N RMVVH+AK YQ +G+ LQDLLQEG
Sbjct: 291  PTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEG 350

Query: 844  SKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKNAKE 665
            + GL+KS+EKFKP AGCRF+TYAYWWIRQ++ KAIF HS++IRLPENVY  L +V  AK 
Sbjct: 351  TVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKR 410

Query: 664  VLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTADPKV 488
              I+EG HQPT EEIA++VG  + KLE+LL  T+TPLSMQ+ +WSDQ TTFQ +TAD ++
Sbjct: 411  SYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEI 470

Query: 487  ETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKERVR 308
            E P+  V+K LMR+H+R LL++L  KE+RIIRLR+GIEDG+QKSL++IG+VFGLSKERVR
Sbjct: 471  EIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVR 530

Query: 307  QLENRALDKLRNCLSSQGLEAYTNLL 230
            QLE+RAL KL+ C+ S GL+AY +LL
Sbjct: 531  QLESRALYKLKQCVGSHGLDAYADLL 556


>ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Gossypium raimondii]
          Length = 562

 Score =  544 bits (1402), Expect = e-151
 Identities = 302/574 (52%), Positives = 396/574 (68%), Gaps = 14/574 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXT-RHFPASV 1745
            MEA RN LS PP   ++ QL+N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARNFLSLPPSFSTRTQLKNSVSSLPSSSVSMFHEQAAAAAATSIPIHSVARHFPTSV 60

Query: 1744 L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 1577
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++ K  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEGKASN----------NFEQ 110

Query: 1576 QLLYSPGLWYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAAS 1397
            Q+L  P L  LS     EN + SL+MQS+++D +E ++V+   +LALAK A+  SKQA +
Sbjct: 111  QMLQWPDL-RLSVLELGENPSSSLNMQSVAADTEETMNVEPSTILALAKNALSASKQALA 169

Query: 1396 LIVDSNSHLPNADELIPSFGMNDIS--PPEKEKI--VRSTRLLERQSKKRRAPKSALLGD 1229
            L  D    L   D L  S G  + S  P E+E+   VRSTR LERQSK+RR P   ++ D
Sbjct: 170  LAEDLKLDLD--DSLSNSLGSANSSTLPVEEEEAPTVRSTRRLERQSKRRRMPSKFMISD 227

Query: 1228 EISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQR 1049
              S  +T  R   +   D +DPLRLFL G E  QLLTAKEE EL ++VQ+L RLE++K  
Sbjct: 228  TYSLRKTNVRKKVSGSYDPNDPLRLFLRGPETTQLLTAKEESELIVEVQDLMRLEKLKSN 287

Query: 1048 LQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMN 869
            LQSQF REPT+VEWAEA+G+SC+ LQ  LH+G+RSREK++Y+NFRMV HVAK YQG+GMN
Sbjct: 288  LQSQFGREPTLVEWAEAIGLSCSALQAELHNGNRSREKLVYANFRMVFHVAKQYQGRGMN 347

Query: 868  LQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNAL 689
            LQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ L
Sbjct: 348  LQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSLL 407

Query: 688  RQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQ 512
             +V  AK   I+EG H P+ EE+A + G TV KL++LL TT+TPLSMQ+P+W+DQ TTFQ
Sbjct: 408  GKVVKAKRSYIQEGNHCPSKEELATRAGITVQKLDKLLFTTRTPLSMQQPVWTDQDTTFQ 467

Query: 511  AVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVF 332
             VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++F
Sbjct: 468  EVTPDTGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNIF 527

Query: 331  GLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            GLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 528  GLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 561


>ref|XP_012485937.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Gossypium raimondii]
            gi|763769326|gb|KJB36541.1| hypothetical protein
            B456_006G165200 [Gossypium raimondii]
          Length = 564

 Score =  544 bits (1401), Expect = e-151
 Identities = 302/575 (52%), Positives = 396/575 (68%), Gaps = 15/575 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXT-RHFPASV 1745
            MEA RN LS PP   ++ QL+N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARNFLSLPPSFSTRTQLKNSVSSLPSSSVSMFHEQAAAAAATSIPIHSVARHFPTSV 60

Query: 1744 L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 1577
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++ K  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEGKASN----------NFEQ 110

Query: 1576 QLLYSPGL-WYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAA 1400
            Q+L  P L   LS     EN + SL+MQS+++D +E ++V+   +LALAK A+  SKQA 
Sbjct: 111  QMLQWPDLRQLLSVLELGENPSSSLNMQSVAADTEETMNVEPSTILALAKNALSASKQAL 170

Query: 1399 SLIVDSNSHLPNADELIPSFGMNDIS--PPEKEKI--VRSTRLLERQSKKRRAPKSALLG 1232
            +L  D    L   D L  S G  + S  P E+E+   VRSTR LERQSK+RR P   ++ 
Sbjct: 171  ALAEDLKLDLD--DSLSNSLGSANSSTLPVEEEEAPTVRSTRRLERQSKRRRMPSKFMIS 228

Query: 1231 DEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQ 1052
            D  S  +T  R   +   D +DPLRLFL G E  QLLTAKEE EL ++VQ+L RLE++K 
Sbjct: 229  DTYSLRKTNVRKKVSGSYDPNDPLRLFLRGPETTQLLTAKEESELIVEVQDLMRLEKLKS 288

Query: 1051 RLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGM 872
             LQSQF REPT+VEWAEA+G+SC+ LQ  LH+G+RSREK++Y+NFRMV HVAK YQG+GM
Sbjct: 289  NLQSQFGREPTLVEWAEAIGLSCSALQAELHNGNRSREKLVYANFRMVFHVAKQYQGRGM 348

Query: 871  NLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNA 692
            NLQDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ 
Sbjct: 349  NLQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSL 408

Query: 691  LRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTF 515
            L +V  AK   I+EG H P+ EE+A + G TV KL++LL TT+TPLSMQ+P+W+DQ TTF
Sbjct: 409  LGKVVKAKRSYIQEGNHCPSKEELATRAGITVQKLDKLLFTTRTPLSMQQPVWTDQDTTF 468

Query: 514  QAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDV 335
            Q VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++
Sbjct: 469  QEVTPDTGIEIPDVSVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNI 528

Query: 334  FGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            FGLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 529  FGLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 563


>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] gi|743810385|ref|XP_011018729.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X1 [Populus euphratica]
            gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica]
          Length = 570

 Score =  542 bits (1397), Expect = e-151
 Identities = 300/576 (52%), Positives = 400/576 (69%), Gaps = 16/576 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQ 1733
            MEAGR LLSS P  P++  L+N+   SV +L E               +HFP SVL QEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQ 60

Query: 1732 RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEH----------GSESSDKYLKD 1586
            RD+ R L ++ +E++P QA LDR + +  TS ++ K              S+  D+ +++
Sbjct: 61   RDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDEIGTSGHEGKDSDELDQMVEN 120

Query: 1585 FERQLLYSPGLWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSK 1409
            FE QL + P  W L  PSQ+ +N ++S   QS++   D+ + V+  D++ LAK+A+  SK
Sbjct: 121  FEYQLHHWPTYWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASK 180

Query: 1408 QAASLIVDSNSHLPN-ADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLG 1232
             AA L  D+++ L N A     SF + ++      +IVRS R L RQS  RR PK+  + 
Sbjct: 181  HAAFL-ADNSTDLDNLASTSSSSFSLEEV------RIVRSRRHLARQSLNRRVPKTKDMI 233

Query: 1231 DEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVK 1055
             E    ++ D   + S   D +DPLRLFL G E +QLLTAKEE EL  Q+Q+L  LE VK
Sbjct: 234  FETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVK 293

Query: 1054 QRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKG 875
             RL+SQF REPT+VEWA+AVG+SC+ L+L LHSG+RSREK+I +N RMVVH+AK YQ +G
Sbjct: 294  NRLESQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRG 353

Query: 874  MNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYN 695
            + LQDLLQEG+ GL+KS+EKFKP AGCRF+TYAYWWIRQ++ KAIF HS++IRLPENVY 
Sbjct: 354  LGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYG 413

Query: 694  ALRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATT 518
             L +V  AK   I+EG HQPT EEIA++VG  + KLE+LL  T+TPLSMQ+ +WSDQ TT
Sbjct: 414  LLGKVMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTT 473

Query: 517  FQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGD 338
            FQ +TAD ++E P+  V+K LMR+H+R LL++L  KE+RIIRLR+GIEDG+QKSL++IG+
Sbjct: 474  FQEITADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGN 533

Query: 337  VFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            VFGLSKERVRQLE+RAL KL+ C+ S GL+AY +LL
Sbjct: 534  VFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 569


>gb|KHG01807.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 564

 Score =  537 bits (1383), Expect = e-149
 Identities = 298/575 (51%), Positives = 393/575 (68%), Gaps = 15/575 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXT-RHFPASV 1745
            MEA R  LS PP   ++ Q +N+       SV++ HE                RHFP SV
Sbjct: 1    MEAARKFLSLPPSFSTRTQFKNSVSSSPSSSVSMFHEQAAAAAATSIPINSVARHFPTSV 60

Query: 1744 L-QEQRDDLRSL---LHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFER 1577
            L QEQRDD R L    + +E+K +    D+ Q++N T+L++EK  +          +FE+
Sbjct: 61   LSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN----------NFEQ 110

Query: 1576 QLLYSPGL-WYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAA 1400
            Q+L  P L   LS     EN + SL MQS+++D +E ++V+   +LALAK A+  SKQA 
Sbjct: 111  QMLQWPDLRQLLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSASKQAL 170

Query: 1399 SLIVDSNSHLPNADELIPSFGM-NDISPPEKEK---IVRSTRLLERQSKKRRAPKSALLG 1232
            +L  D    L   D +  S G  N  + P +E     VRSTR LERQSK+RR P   ++ 
Sbjct: 171  ALAEDLKLDLD--DSISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSKFMIS 228

Query: 1231 DEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQ 1052
            +  SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL +QVQ+L RLE++K 
Sbjct: 229  ETYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESELIVQVQDLMRLEKLKS 288

Query: 1051 RLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGM 872
            +LQSQF  EPT+VEWAEA+G+SC+ LQ  +H+G+RSREK++Y+NFRMVVHVAK YQG+GM
Sbjct: 289  KLQSQFGCEPTLVEWAEAIGLSCSALQAEIHNGNRSREKLVYANFRMVVHVAKQYQGRGM 348

Query: 871  NLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNA 692
            N QDLLQEGS GLIKS+EKFKP  GCRF+TY+YWWIRQ++ K+I  HS++IRLPEN Y+ 
Sbjct: 349  NFQDLLQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKSIVQHSRTIRLPENAYSL 408

Query: 691  LRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTF 515
            L +V  AK   I+EG H P+ EE+A +VG TV KL++ L TT+TPLSMQ+P+W+DQ TTF
Sbjct: 409  LGKVVKAKRSYIREGNHCPSKEELATRVGITVQKLDKFLFTTRTPLSMQQPVWTDQDTTF 468

Query: 514  QAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDV 335
            Q VT D  +E P+  V+K LMR+HVRNLL VL PKE++II+LR+GIE+ ++ SL++IG++
Sbjct: 469  QEVTPDSGIEIPDVCVAKQLMRQHVRNLLRVLSPKERKIIKLRFGIEESKENSLSEIGNI 528

Query: 334  FGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            FGLSKERVRQLE+RAL KL+ CL  QGL AY +LL
Sbjct: 529  FGLSKERVRQLESRALYKLKQCLVKQGLGAYADLL 563


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  534 bits (1376), Expect = e-148
 Identities = 289/565 (51%), Positives = 390/565 (69%), Gaps = 5/565 (0%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQ 1733
            MEAGRNLLSSPP  PS+ +++++   S +                   RHFP SVL QEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 1732 RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 1556
            RD+ R LLH+ +E+K  QA  D   ++ +    +EK    S   D+ ++D E Q L+ P 
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKN---SGDLDQLVQDLEHQFLHWPD 117

Query: 1555 LWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVDSN 1379
            LW LS P +R E+ ++SL MQS+S+D +E +  + +D +ALA++A+  SK+AASL    N
Sbjct: 118  LWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA--EN 175

Query: 1378 SHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISSLRTTDR 1199
              L  A+    S   +   P E+ K VRST+ LER+SKKR+  K  +   E  + R    
Sbjct: 176  PKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 1198 HHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQFDREP 1022
              K S   D +DPLRLFL G E R+LLTA EE EL  Q+Q+L RLE+ K +LQSQF REP
Sbjct: 236  KKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1021 TVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLLQEGS 842
            T++EWA+A+G+SC  L+  LHSG+ SREK+I +N R+VVHVAK YQG+G+ L DLLQEGS
Sbjct: 296  TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 841  KGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKNAKEV 662
             GL+KS+EKFKP AGCRF++YAYWW+RQ++RKAIF HS++IRLPEN+Y  L +V  AK +
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 661  LIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTADPKVE 485
             I+EG H P  E++A++VG TV KLERL+  T+ PLSMQ+P+W+DQ TTFQ +TAD  VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 484  TPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKERVRQ 305
             P+  V K LMR+HVRNLL++L PKE+ I+RLR+GIEDG+ KSL+++G++FGLSKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 304  LENRALDKLRNCLSSQGLEAYTNLL 230
            LE+RAL +L+  L  +    Y +LL
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLL 560


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  532 bits (1371), Expect = e-148
 Identities = 294/573 (51%), Positives = 392/573 (68%), Gaps = 13/573 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPS----KHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXTRHFP 1754
            MEAGRNLLSSPP  PS    KH L ++       SV + +E               RHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1753 ASVL-QEQRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFE 1580
             SVL QEQRD+ R LLH+ +E+K  QA  D   ++ +    +EK    S   D+ ++D E
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKN---SGDLDQLVQDLE 117

Query: 1579 RQLLYSPGLWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQA 1403
             Q L+ P LW LS P +R E+ ++SL MQS+S+D +E +  + +D +ALA++A+  SK+A
Sbjct: 118  HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 177

Query: 1402 ASLIVDSNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEI 1223
            ASL    N  L  A+    S   +   P E+ K VRST+ LER+SKKR+  K  +   E 
Sbjct: 178  ASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHET 235

Query: 1222 SSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRL 1046
             + R      K S   D +DPLRLFL G E R+LLTA EE EL  Q+Q+L RLE+ K +L
Sbjct: 236  YNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 1045 QSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNL 866
            QSQF REPT++EWA+A+G+SC  L+  LHSG+ SREK+I +N R+VVHVAK YQG+G+ L
Sbjct: 296  QSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 865  QDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALR 686
             DLLQEGS GL+KS+EKFKP AGCRF++YAYWW+RQ++RKAIF HS++IRLPEN+Y  L 
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 685  QVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQA 509
            +V  AK + I+EG H P  E++A++VG TV KLERL+  T+ PLSMQ+P+W+DQ TTFQ 
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 508  VTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFG 329
            +TAD  VE P+  V K LMR+HVRNLL++L PKE+ I+RLR+GIEDG+ KSL+++G++FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 328  LSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            LSKERVRQLE+RAL +L+  L  +    Y +LL
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLL 568


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  531 bits (1369), Expect = e-148
 Identities = 294/574 (51%), Positives = 392/574 (68%), Gaps = 14/574 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPS----KHQLRNAHPLS-----VAVLHEXXXXXXXXXXXXXXTRHF 1757
            MEAGRNLLSSPP  PS    KH L ++   S     V + +E               RHF
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 1756 PASVL-QEQRDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDF 1583
            P SVL QEQRD+ R LLH+ +E+K  QA  D   ++ +    +EK    S   D+ ++D 
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKN---SGDLDQLVQDL 117

Query: 1582 ERQLLYSPGLWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQ 1406
            E Q L+ P LW LS P +R E+ ++SL MQS+S+D +E +  + +D +ALA++A+  SK+
Sbjct: 118  EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 177

Query: 1405 AASLIVDSNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDE 1226
            AASL    N  L  A+    S   +   P E+ K VRST+ LER+SKKR+  K  +   E
Sbjct: 178  AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 1225 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQR 1049
              + R      K S   D +DPLRLFL G E R+LLTA EE EL  Q+Q+L RLE+ K +
Sbjct: 236  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 295

Query: 1048 LQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMN 869
            LQSQF REPT++EWA+A+G+SC  L+  LHSG+ SREK+I +N R+VVHVAK YQG+G+ 
Sbjct: 296  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 355

Query: 868  LQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNAL 689
            L DLLQEGS GL+KS+EKFKP AGCRF++YAYWW+RQ++RKAIF HS++IRLPEN+Y  L
Sbjct: 356  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 415

Query: 688  RQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQ 512
             +V  AK + I+EG H P  E++A++VG TV KLERL+  T+ PLSMQ+P+W+DQ TTFQ
Sbjct: 416  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 475

Query: 511  AVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVF 332
             +TAD  VE P+  V K LMR+HVRNLL++L PKE+ I+RLR+GIEDG+ KSL+++G++F
Sbjct: 476  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 535

Query: 331  GLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            GLSKERVRQLE+RAL +L+  L  +    Y +LL
Sbjct: 536  GLSKERVRQLESRALYRLKQSLGGKASYGYADLL 569


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  531 bits (1368), Expect = e-148
 Identities = 300/574 (52%), Positives = 396/574 (68%), Gaps = 14/574 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNA----HPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL 1742
            MEA RNLLS PP   ++ QL+++       SV + HE               RHFP SVL
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 1741 -QEQRDDLRSL--LHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQ 1574
             QEQRDD R L  LH  +E+K +  A D+ QI+N  SLN+E     + S++     FE++
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEE-----NASNNFGQLGFEKK 115

Query: 1573 LLYSPGLWYL-SAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAAS 1397
            LL  P L  L S     EN + + +MQS+++D  E + V+  +++ALAK+A+  SKQAAS
Sbjct: 116  LLQWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAAS 175

Query: 1396 LIVDSNSHLPNADELIPSFGMNDIS--PPEKEKIV--RSTRLLERQSKKRRAPKSALLGD 1229
            L  D    L   D L  S G  +    P EKE++V  RSTR LERQSK+RR      + +
Sbjct: 176  LSEDLKLDLD--DSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRE 233

Query: 1228 EISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQR 1049
              SS RT  R   +   D +DPLRLFL G E +QLLTAKEE EL  QVQ L RLE+VK +
Sbjct: 234  TYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSK 293

Query: 1048 LQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMN 869
            LQSQF REPT+VEWAEA+G+ C+ LQ  LHSG+ SR+K+IY+N RMVVH+AK YQ +G++
Sbjct: 294  LQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLS 353

Query: 868  LQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNAL 689
            LQDLLQEGS GL+KS+E+FKP  GCRF+TYAYWWIRQ++RK+I  HS+++RLPENV+  L
Sbjct: 354  LQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLL 413

Query: 688  RQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQ 512
             +V +AK+  I+EG H P+ EE+A++VG TV KL++LL TT+ PLSMQ+ +W DQ  TFQ
Sbjct: 414  SKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQ 473

Query: 511  AVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVF 332
             VT D  +E P+  V+K LMR+HVRNLLSVL P+E+ II+LR+GIE+ ++ SL++IG++F
Sbjct: 474  EVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMF 533

Query: 331  GLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            GLSKERVRQLE+RAL KL+ CL+  GL AY +LL
Sbjct: 534  GLSKERVRQLESRALYKLKQCLNKHGLGAYVDLL 567


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  531 bits (1367), Expect = e-147
 Identities = 307/576 (53%), Positives = 400/576 (69%), Gaps = 16/576 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPL-------SVAVLHEXXXXXXXXXXXXXXTRHFPA 1751
            MEAGR+ LSS    PS   LR  HPL       SV +LHE               RHFP 
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLR--HPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPT 58

Query: 1750 SVL-QEQRDDLRSLLH-LREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKY--LKDF 1583
            SVL QEQRD+ + LLH L+E+K  +AALDR QI+   S++++      +  D Y  +   
Sbjct: 59   SVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDL-----DIDDFYPLVNSS 113

Query: 1582 ERQLLYSPGLWYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQA 1403
            + QLL    L   S+       +  L ++S+++ +++ + V+  +++ALAK+A+  S++A
Sbjct: 114  KPQLLNHDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREA 173

Query: 1402 ASLIVDSNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKK---RRAPKSALLG 1232
            ASL  DS S   + D+L  +   N I   E+EK VRSTR+LER+ K+   R+ PKS ++G
Sbjct: 174  ASLAEDSQSMGADFDDLGYTSLANWIV--EEEKTVRSTRILERRRKRIKTRKVPKSKVIG 231

Query: 1231 DEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVK 1055
             E +S   +D   K S   + +DPLRLFL G E RQLLTAKEE EL  +VQ+L +LEEVK
Sbjct: 232  HESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVK 291

Query: 1054 QRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKG 875
             RLQ+QF REPT++EWAEAVG+SC  L+  L SG  SREK+IY+N RMVVH+AK YQG+G
Sbjct: 292  SRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRG 351

Query: 874  MNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYN 695
            + LQDL+QEGS GL+KS+EKFKP AGCRF+TYAYWWIRQ+VRKAIF HS++IRLPENVY+
Sbjct: 352  LGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYS 411

Query: 694  ALRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATT 518
             L +V  AK+  I+EG H P  EE+A++VG TV KLE+LL  T+ PLSMQ+P+W+DQ TT
Sbjct: 412  LLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTT 471

Query: 517  FQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGD 338
            FQ VTAD  VE P+  V+K LMR+HVR+LLS+L  +E+ IIRLRYGIEDG+Q+SL++IG 
Sbjct: 472  FQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGG 531

Query: 337  VFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            +FGLSKERVRQLE+RA  KLR  L SQGL AY  LL
Sbjct: 532  MFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLL 567


>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
            guineensis]
          Length = 570

 Score =  530 bits (1365), Expect = e-147
 Identities = 300/576 (52%), Positives = 396/576 (68%), Gaps = 16/576 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVLQ-EQ 1733
            MEAGR LL+SPP  P++  LRN  P SV +LH+                HFP SVL  EQ
Sbjct: 1    MEAGRRLLASPPPNPTRTHLRNRSPTSVPMLHDQASWTNTSVPTTPIACHFPISVLSHEQ 60

Query: 1732 RDDLRSLLHLREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPGL 1553
             DD ++    +EEK  Q   D  Q+ +  S  +EK++       +YL+  ++QLLY    
Sbjct: 61   HDDYKTNCISKEEKNVQ---DNQQVRSGRSCYEEKEKC---EFAQYLRYSKQQLLYHQVF 114

Query: 1552 WYLSAPSQRENKA-LSLDMQSMSSDADEEL------HVKAYDLLALAKQAVLVSKQAASL 1394
            WY       E K  L++ ++ + SD+           V+  ++LALAK+A++ S++AASL
Sbjct: 115  WYPFLSLYTEEKTPLAMAVEPIKSDSKGVQLENCADFVRPTEVLALAKRAMMASRKAASL 174

Query: 1393 IVDSNSHLPNADE-----LIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSAL-LG 1232
            + +SN      DE     L       DIS  E    VRS RLLER+SKKR+  K++  + 
Sbjct: 175  MEESNILAAEFDESHFLSLNHRGSTVDISIKEV-MAVRSKRLLERRSKKRKVGKNSNNVA 233

Query: 1231 DEISSLRTTDRHHKTS--LIDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEV 1058
             E+S L T+D   K    LI+ +DPLRLFL G E +QLLT KEEK+LF+Q+Q++ RLEEV
Sbjct: 234  REVSKLMTSDMKEKIDKGLINQNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDVVRLEEV 293

Query: 1057 KQRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGK 878
            +QRL+ QFDREPT+ EWA+AVGMSC  LQ  L SG RSREKMI +N R+VVHVAK Y+GK
Sbjct: 294  QQRLRLQFDREPTLSEWAKAVGMSCQVLQSCLSSGKRSREKMINANLRLVVHVAKQYEGK 353

Query: 877  GMNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVY 698
            G+++QDLLQEGS+GL+KSLEKFKP AGCRF+TYAYWWIRQS+R+AIF +S+ IRLPENV+
Sbjct: 354  GLSVQDLLQEGSRGLMKSLEKFKPKAGCRFATYAYWWIRQSIRRAIFLNSRVIRLPENVF 413

Query: 697  NALRQVKNAKEVLIKEGHQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATT 518
              L+++KNA+ + I+EGH PTNEEIAK+VG +V KLE LL+TT+ P+S+Q  +W+DQ   
Sbjct: 414  GLLKRIKNARRLFIQEGHAPTNEEIAKRVGISVEKLEALLLTTRNPISIQECVWTDQDVK 473

Query: 517  FQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGD 338
            FQ +TADP VETPE  ++K +MR+HVR LL +L P+E++II+ R+GI + EQKSL +IG 
Sbjct: 474  FQEITADPGVETPELSIAKQMMRQHVRGLLRILKPRERQIIQYRFGIPNNEQKSLTEIGA 533

Query: 337  VFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            +FGLSKERVRQLE+RALDKL+ CL S GL AY  LL
Sbjct: 534  MFGLSKERVRQLESRALDKLKGCLPSHGLGAYLELL 569


>ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 561

 Score =  529 bits (1362), Expect = e-147
 Identities = 284/572 (49%), Positives = 388/572 (67%), Gaps = 12/572 (2%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQ 1733
            MEAGR+L+SSPP  P +  LRN    SV +LH+               RH P SVL Q+Q
Sbjct: 1    MEAGRSLVSSPPQFPPRTHLRNCSSSSVLLLHDQVTPALTSLSTTLA-RHSPTSVLTQDQ 59

Query: 1732 RDDLRSLLHLREEKP---------HQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFE 1580
             ++ RS+L  +E+            QA +      ND +        G+   D+Y+ +F+
Sbjct: 60   HNESRSMLCSKEDSVFQLKQTLGMRQAVMAPASSSNDGN--------GNVDPDQYVNEFQ 111

Query: 1579 RQLLYSPGLWYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAA 1400
             QLL  P LWYL    Q + +  S+ M+S+S+  ++ + V+A  ++ALA++A    K+AA
Sbjct: 112  LQLLRRPELWYLWPSLQTKEQLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAA 171

Query: 1399 SLIVDSNSHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEIS 1220
            +++ D+       D+   S  +  ++    ++ VRSTRL+ERQ K+RR PK  +   E +
Sbjct: 172  AIVKDAELFGARLDD---SSSIRSLTGVPAQRTVRSTRLVERQMKRRRVPKPKIEVQETN 228

Query: 1219 SLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQ 1043
              R  +   K+    D +DPLRLFL G E RQLLT+KEE EL +++QEL RL+E+K RL+
Sbjct: 229  HRRKPESQRKSDEGFDPNDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLK 288

Query: 1042 SQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQ 863
             QF REPT+VEWA A G+SC  LQ  +H G  SR+K+I +NFRMVVH+AK YQG+G++LQ
Sbjct: 289  VQFSREPTLVEWAAAAGISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQ 348

Query: 862  DLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQ 683
            DLLQEGS GL++S+EKFKP AGCRF+TYAYWWIRQS+RKA+F HS++IRLPENVY+ L +
Sbjct: 349  DLLQEGSMGLMRSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSR 408

Query: 682  VKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAV 506
            V  AK++ I++G H PT E+IA   G +V  LERLL T + PLS+Q+P+W+DQ TTFQ +
Sbjct: 409  VYEAKKLCIQQGNHLPTKEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEI 468

Query: 505  TADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGL 326
            TAD  +E P+ GV+K LMR+H+RNLLSVL P+E++IIRLR+GIE GEQKSL++IG  FGL
Sbjct: 469  TADTTIEVPDVGVAKQLMRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGL 528

Query: 325  SKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            SKERVRQLE+RAL KL+ CL S GL AY N++
Sbjct: 529  SKERVRQLESRALYKLKQCLGSHGLAAYANMI 560


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  528 bits (1361), Expect = e-147
 Identities = 307/580 (52%), Positives = 401/580 (69%), Gaps = 20/580 (3%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPL-------SVAVLHEXXXXXXXXXXXXXXTRHFPA 1751
            MEAGR+ LSS    PS   LR  HPL       SV +LHE               RHFP 
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLR--HPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPT 58

Query: 1750 SVL-QEQRDDLRSLLH-LREEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKY--LKDF 1583
            SVL QEQRD+ + LLH L+E+K  +A LDR QI+   S++++      +  D Y  +   
Sbjct: 59   SVLLQEQRDEFKPLLHVLKEDKTSEATLDRMQIETGASVHEDL-----DIDDFYPLVNGS 113

Query: 1582 ERQLLYSPGLWYLSAPSQRENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQA 1403
            + QLL    L   S+       +  + ++S+++ +++ + V+  +++ALAK+A+  S++A
Sbjct: 114  KPQLLNPDILDVFSSLQTGAKPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREA 173

Query: 1402 ASLIVDSNSHLPNADELIPSFGMNDISPP----EKEKIVRSTRLLERQSKK---RRAPKS 1244
            ASL  DS S   + DE + S G+   S      E+EK VRSTR+LER+ K+   R+ PKS
Sbjct: 174  ASLAEDSQSMGADFDESL-SLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKS 232

Query: 1243 ALLGDEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRL 1067
             L+G E +S  ++D   K S   + +DPLRLFL G E RQLLTAKEE EL  +VQ+L +L
Sbjct: 233  KLIGHESNSFTSSDVPKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKL 292

Query: 1066 EEVKQRLQSQFDREPTVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNY 887
            EEVK RLQ+QF REPT++EWAEAVG+SC  L+  L SG  SREK+IY+N RMVVH+AK Y
Sbjct: 293  EEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQY 352

Query: 886  QGKGMNLQDLLQEGSKGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPE 707
            QG+G+ LQDL+QEGS GL+KS+EKFKP AGCRF+TYAYWWIRQ+VRKAIF HS++IRLPE
Sbjct: 353  QGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPE 412

Query: 706  NVYNALRQVKNAKEVLIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSD 530
            NVY+ L +V  AK+  I+EG H P  EE+A +VG TV KLE+LL  T+ PLSMQ+P+W+D
Sbjct: 413  NVYSLLGKVLEAKKSCIQEGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQQPVWAD 472

Query: 529  QATTFQAVTADPKVETPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLA 350
            Q TTFQ VTAD  VE P+  V+K LMR+HVR+LLS+L  +E++IIRLRYGIEDG+Q+SL+
Sbjct: 473  QDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLS 532

Query: 349  QIGDVFGLSKERVRQLENRALDKLRNCLSSQGLEAYTNLL 230
            +IG +FGLSKERVRQLE+RA  KLR  L SQGL AY  LL
Sbjct: 533  EIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLL 572


>gb|KDO48074.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 561

 Score =  528 bits (1361), Expect = e-147
 Identities = 287/565 (50%), Positives = 387/565 (68%), Gaps = 5/565 (0%)
 Frame = -3

Query: 1909 MEAGRNLLSSPPFIPSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQ 1733
            MEAGRNLLSSPP  PS+ +++++   S +                   RHFP SVL QEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 1732 RDDLRSLLHL-REEKPHQAALDRTQIDNDTSLNQEKKEHGSESSDKYLKDFERQLLYSPG 1556
            RD+ R LLH+ +E+K  QA  D   I+ +    +EK    S   D+ ++D E Q L+ P 
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKN---SGDLDQLVQDLEHQFLHWPD 117

Query: 1555 LWYLSAPSQR-ENKALSLDMQSMSSDADEELHVKAYDLLALAKQAVLVSKQAASLIVDSN 1379
            LW LS P +R E+ ++SL MQS+S+D +E +  + +D +ALA++A+  SK+AASL    N
Sbjct: 118  LWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA--EN 175

Query: 1378 SHLPNADELIPSFGMNDISPPEKEKIVRSTRLLERQSKKRRAPKSALLGDEISSLRTTDR 1199
              L  A+    S   +   P E+ K     R LER+SKKR+  K  +   E  + R    
Sbjct: 176  PKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASV 235

Query: 1198 HHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKELFIQVQELTRLEEVKQRLQSQFDREP 1022
              K S   D +DPLRLFL G E R+LLTA EE EL  Q+Q+L RLE+ K +LQSQF REP
Sbjct: 236  KKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1021 TVVEWAEAVGMSCATLQLHLHSGHRSREKMIYSNFRMVVHVAKNYQGKGMNLQDLLQEGS 842
            T++EWA+A+G+SC  L+  LHSG+ SREK+I +N R+VVHVAK YQG+G++L DLLQEGS
Sbjct: 296  TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 355

Query: 841  KGLIKSLEKFKPHAGCRFSTYAYWWIRQSVRKAIFHHSKSIRLPENVYNALRQVKNAKEV 662
             GL+KS+EKFKP AGCRF++YAYWW+RQ++RKAIF HS++IRLPEN+Y  L +V  AK +
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRL 415

Query: 661  LIKEG-HQPTNEEIAKQVGFTVGKLERLLITTKTPLSMQRPIWSDQATTFQAVTADPKVE 485
             I+EG H P  E++A++VG TV KLERL+  T+ PLSMQ+P+W+DQ TTFQ +TAD  VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 484  TPEQGVSKDLMRRHVRNLLSVLPPKEKRIIRLRYGIEDGEQKSLAQIGDVFGLSKERVRQ 305
             P+  V K LMR+HVRNLL++L PKE+ I+RLR+GIEDG+ KSL+++G++FGLSKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 304  LENRALDKLRNCLSSQGLEAYTNLL 230
            LE+RAL +L+  L  +    Y +LL
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLL 560