BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00051323
         (1077 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub...   274   1e-70
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   258   8e-66
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              258   8e-66
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...   257   1e-65
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...   257   1e-65
gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus g...   257   1e-65
ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I sub...   249   4e-63
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   248   8e-63
ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Popu...   246   3e-62
ref|XP_013672001.1| PREDICTED: DNA-directed RNA polymerase I sub...   244   7e-62
ref|XP_013604500.1| PREDICTED: DNA-directed RNA polymerase I sub...   244   7e-62
ref|XP_013663557.1| PREDICTED: DNA-directed RNA polymerase I sub...   244   1e-61
ref|XP_010546965.1| PREDICTED: DNA-directed RNA polymerase I sub...   243   2e-61
ref|XP_008240981.1| PREDICTED: DNA-directed RNA polymerase I sub...   243   2e-61
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...   242   4e-61
ref|XP_009116470.1| PREDICTED: DNA-directed RNA polymerase I sub...   240   1e-60
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...   240   2e-60
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   239   4e-60
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...   238   5e-60
ref|XP_010504699.1| PREDICTED: DNA-directed RNA polymerase I sub...   238   6e-60

>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
            nucifera]
          Length = 1676

 Score =  274 bits (700), Expect = 1e-70
 Identities = 170/382 (44%), Positives = 219/382 (57%), Gaps = 23/382 (6%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y+SSLAQPGEPVGV+AA S+GEPSTQMTLNTFHHAGRG+MNVTLG+PRLQEILMRAS KI
Sbjct: 1152 YISSLAQPGEPVGVVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMRASEKI 1211

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP +K KTE+                      + + LAAK +KVTV D+IESM+
Sbjct: 1212 QTPVMTCPLRKGKTED----------------------DAKRLAAKLQKVTVADVIESME 1249

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V VVP      QVST+YKLK+K++ PE +PPY  I L+DC  T+  ++V E+ED I+SHL
Sbjct: 1250 VGVVPFSVKKHQVSTVYKLKLKLYPPELYPPYSGITLKDCQATLKFVFVGEMEDAIQSHL 1309

Query: 537  KLLSRINGIHEI---------DGG-ESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXX 388
             +LS+I GI  +         DG  E G  S++Q  E+ D++G                 
Sbjct: 1310 LMLSKIRGITNVVHSTQSNSGDGADEDGPTSKSQAAEENDDAGDDDD------------- 1356

Query: 387  XXXXXXXXXXDAQKRKQQATDEIDYDEDGMEPEASVVEN----------LDTDSDKGD-- 244
                      DAQKRK+QATDE+DY ED ME E    EN           +++ D+ +  
Sbjct: 1357 -YEAPDDLGADAQKRKRQATDEMDY-EDDMENEIVNTENGRSDIEASAGFESEIDQAEVE 1414

Query: 243  -DHISDGEDQASGAEDEQKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTE 67
              +I DGE Q   AEDE    P    + ++ K +            R   K+ DR  F  
Sbjct: 1415 AGNIMDGEIQVFDAEDEASQTPSQHGTVSKSKSSGGKDEADARGMTRRTKKDSDRAFFMV 1474

Query: 66   ATGLDFEVHLKFSPKDPHILLS 1
            A GLDFEVH +F+  +PHILL+
Sbjct: 1475 AEGLDFEVHFRFT-NEPHILLA 1495


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score =  258 bits (658), Expect = 8e-66
 Identities = 158/365 (43%), Positives = 217/365 (59%), Gaps = 6/365 (1%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y+SSLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG++NVTLG+PRLQEILM A+  I
Sbjct: 1161 YISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDI 1220

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP Q  ++++                      + + LAAK KKVTV DI ESM+
Sbjct: 1221 KTPIMTCPLQMGRSKD----------------------DAERLAAKLKKVTVADITESME 1258

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V +VP    + Q  ++YKLK+K+++P  +PP+  I LEDC +T++ ++VRELED I++HL
Sbjct: 1259 VSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHL 1318

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXXX 358
             LLS+I+GI           S+   + DED SG                           
Sbjct: 1319 LLLSKISGIKNFLPDSRSMASK---ETDEDASG--DGLAGGNGDEDDDGEDDGGAEDLGL 1373

Query: 357  DAQKRKQQATDEIDYDE-----DGMEPEASVVENLDTDSDKGDDHISDGEDQA-SGAEDE 196
            DAQKRKQQA+DE+DY +     D  EP A + E +D   D+ +  IS+ E+   S  +DE
Sbjct: 1374 DAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVE--ISNNEEVGISDPKDE 1431

Query: 195  QKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDP 16
               +P   KS ++ K+AK +   KK  + R + K+FDR I  +A G  FEVH +F+  +P
Sbjct: 1432 DSKVPSKSKS-SKNKKAKTEAKRKK--RFRAIKKDFDRAILVKAKGTYFEVHFRFT-NEP 1487

Query: 15   HILLS 1
            HILL+
Sbjct: 1488 HILLA 1492


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  258 bits (658), Expect = 8e-66
 Identities = 158/365 (43%), Positives = 217/365 (59%), Gaps = 6/365 (1%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y+SSLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG++NVTLG+PRLQEILM A+  I
Sbjct: 1139 YISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDI 1198

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP Q  ++++                      + + LAAK KKVTV DI ESM+
Sbjct: 1199 KTPIMTCPLQMGRSKD----------------------DAERLAAKLKKVTVADITESME 1236

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V +VP    + Q  ++YKLK+K+++P  +PP+  I LEDC +T++ ++VRELED I++HL
Sbjct: 1237 VSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHL 1296

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXXX 358
             LLS+I+GI           S+   + DED SG                           
Sbjct: 1297 LLLSKISGIKNFLPDSRSMASK---ETDEDASG--DGLAGGNGDEDDDGEDDGGAEDLGL 1351

Query: 357  DAQKRKQQATDEIDYDE-----DGMEPEASVVENLDTDSDKGDDHISDGEDQA-SGAEDE 196
            DAQKRKQQA+DE+DY +     D  EP A + E +D   D+ +  IS+ E+   S  +DE
Sbjct: 1352 DAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVE--ISNNEEVGISDPKDE 1409

Query: 195  QKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDP 16
               +P   KS ++ K+AK +   KK  + R + K+FDR I  +A G  FEVH +F+  +P
Sbjct: 1410 DSKVPSKSKS-SKNKKAKTEAKRKK--RFRAIKKDFDRAILVKAKGTYFEVHFRFT-NEP 1465

Query: 15   HILLS 1
            HILL+
Sbjct: 1466 HILLA 1470


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Eucalyptus grandis]
          Length = 1669

 Score =  257 bits (656), Expect = 1e-65
 Identities = 160/364 (43%), Positives = 211/364 (57%), Gaps = 6/364 (1%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y SSLAQPGEPVG++AA S+GEPSTQMTLNTFHHAGRG+MNVTLG+PRLQEILM AS  I
Sbjct: 1149 YFSSLAQPGEPVGIVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASTDI 1208

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  + +++                       +  SLA K KK+TV ++IESM+
Sbjct: 1209 KTPIMTCPLWRGRSKQ----------------------DANSLAEKLKKITVAEMIESME 1246

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V VVP   +N QV ++YKLK+K+ +P+ F       ++ C + ++V+Y+RELED I++HL
Sbjct: 1247 VAVVPFAVNNHQVCSIYKLKMKLKRPKVF------SVKHCEEILEVVYLRELEDAIQNHL 1300

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQV---XXXXXXXXXXXXXXXXXX 367
             LLS+I+GI      E+          DED SG  SQ                       
Sbjct: 1301 LLLSKISGIKNFTSSET----------DEDASGSASQHAEERTVDDDADDGDDDGNDNDD 1350

Query: 366  XXXDAQKRKQQATDEIDYDEDGMEPEASVVE---NLDTDSDKGDDHISDGEDQASGAEDE 196
               D QKRK+QATDE++Y EDG E E +  E    L++D D+ +D +  GED   G    
Sbjct: 1351 LGFDGQKRKRQATDEMEY-EDGYEEERNEPELSAGLESDGDQAND-VDIGED-GDGPPGI 1407

Query: 195  QKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDP 16
               I  P K+K  +K AK D   KK  + + V K FDR IF  A GLDFEVH +F+  +P
Sbjct: 1408 APEIVSPSKTKKSKKNAKSDDEGKKRVRTK-VIKEFDRAIFVAANGLDFEVHFRFT-NEP 1465

Query: 15   HILL 4
            H+LL
Sbjct: 1466 HVLL 1469


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Eucalyptus grandis]
          Length = 1669

 Score =  257 bits (656), Expect = 1e-65
 Identities = 160/364 (43%), Positives = 211/364 (57%), Gaps = 6/364 (1%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y SSLAQPGEPVG++AA S+GEPSTQMTLNTFHHAGRG+MNVTLG+PRLQEILM AS  I
Sbjct: 1149 YFSSLAQPGEPVGIVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASTDI 1208

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  + +++                       +  SLA K KK+TV ++IESM+
Sbjct: 1209 KTPIMTCPLWRGRSKQ----------------------DANSLAEKLKKITVAEMIESME 1246

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V VVP   +N QV ++YKLK+K+ +P+ F       ++ C + ++V+Y+RELED I++HL
Sbjct: 1247 VAVVPFAVNNHQVCSIYKLKMKLKRPKVF------SVKHCEEILEVVYLRELEDAIQNHL 1300

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQV---XXXXXXXXXXXXXXXXXX 367
             LLS+I+GI      E+          DED SG  SQ                       
Sbjct: 1301 LLLSKISGIKNFTSSET----------DEDASGSASQHAEERTVDDDADDGDDDGNDNDD 1350

Query: 366  XXXDAQKRKQQATDEIDYDEDGMEPEASVVE---NLDTDSDKGDDHISDGEDQASGAEDE 196
               D QKRK+QATDE++Y EDG E E +  E    L++D D+ +D +  GED   G    
Sbjct: 1351 LGFDGQKRKRQATDEMEY-EDGYEEERNEPELSAGLESDGDQAND-VDIGED-GDGPPGI 1407

Query: 195  QKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDP 16
               I  P K+K  +K AK D   KK  + + V K FDR IF  A GLDFEVH +F+  +P
Sbjct: 1408 APEIVSPSKTKKSKKNAKSDDEGKKRVRTK-VIKEFDRAIFVAANGLDFEVHFRFT-NEP 1465

Query: 15   HILL 4
            H+LL
Sbjct: 1466 HVLL 1469


>gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus grandis]
          Length = 1606

 Score =  257 bits (656), Expect = 1e-65
 Identities = 160/364 (43%), Positives = 211/364 (57%), Gaps = 6/364 (1%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y SSLAQPGEPVG++AA S+GEPSTQMTLNTFHHAGRG+MNVTLG+PRLQEILM AS  I
Sbjct: 1086 YFSSLAQPGEPVGIVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASTDI 1145

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  + +++                       +  SLA K KK+TV ++IESM+
Sbjct: 1146 KTPIMTCPLWRGRSKQ----------------------DANSLAEKLKKITVAEMIESME 1183

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V VVP   +N QV ++YKLK+K+ +P+ F       ++ C + ++V+Y+RELED I++HL
Sbjct: 1184 VAVVPFAVNNHQVCSIYKLKMKLKRPKVF------SVKHCEEILEVVYLRELEDAIQNHL 1237

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQV---XXXXXXXXXXXXXXXXXX 367
             LLS+I+GI      E+          DED SG  SQ                       
Sbjct: 1238 LLLSKISGIKNFTSSET----------DEDASGSASQHAEERTVDDDADDGDDDGNDNDD 1287

Query: 366  XXXDAQKRKQQATDEIDYDEDGMEPEASVVE---NLDTDSDKGDDHISDGEDQASGAEDE 196
               D QKRK+QATDE++Y EDG E E +  E    L++D D+ +D +  GED   G    
Sbjct: 1288 LGFDGQKRKRQATDEMEY-EDGYEEERNEPELSAGLESDGDQAND-VDIGED-GDGPPGI 1344

Query: 195  QKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDP 16
               I  P K+K  +K AK D   KK  + + V K FDR IF  A GLDFEVH +F+  +P
Sbjct: 1345 APEIVSPSKTKKSKKNAKSDDEGKKRVRTK-VIKEFDRAIFVAANGLDFEVHFRFT-NEP 1402

Query: 15   HILL 4
            H+LL
Sbjct: 1403 HVLL 1406


>ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Populus
            euphratica]
          Length = 1699

 Score =  249 bits (635), Expect = 4e-63
 Identities = 164/390 (42%), Positives = 219/390 (56%), Gaps = 31/390 (7%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            +  SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM ASA I
Sbjct: 1141 FFLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADI 1200

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP Q+ +T+                       + + L+ K KKVTV DIIESM+
Sbjct: 1201 KTPIMTCPLQEGRTKE----------------------DAERLSDKLKKVTVADIIESME 1238

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V V+P    ND +  +YKLK+K++ P  +P + DI +E+  +T++VL+VRELED I++HL
Sbjct: 1239 VSVMPFAVQNDGICRIYKLKMKLYTPAHYPQHADISVENWEETLEVLFVRELEDAIQNHL 1298

Query: 537  KLLSRINGIHE-IDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXX 361
             LLS+I+GI   +    SG    T ++ +ED SG  S +                     
Sbjct: 1299 VLLSKISGIKNFLKESHSG----TPIEAEEDVSGNISHE---GENDDDSDDEGEEADDLG 1351

Query: 360  XDAQKRKQQATDEIDYDE--DGM--EPEASVVENLDTDSDKGDDHISDGEDQAS--GAED 199
             D QKRKQQ TDE+DYD+  +G+  E E  +  +      + D   +D E + S  G  D
Sbjct: 1352 LDVQKRKQQVTDEMDYDDGSEGLLNEDEGDLSGSQAPSGSESDTEPADKESEISNTGMVD 1411

Query: 198  EQK------------SIPMPKKSKTE-----EKRAKPDGNPKKVAKARG-------V*KN 91
                           S P  +K  +E     E  +K     KK  KA+G       V K+
Sbjct: 1412 NDSEYFEKPSHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKVRSKLVKKD 1471

Query: 90   FDRNIFTEATGLDFEVHLKFSPKDPHILLS 1
            FDR+IF EA GL FE+HLKF+  +PHILL+
Sbjct: 1472 FDRSIFVEAKGLHFEIHLKFT-NEPHILLA 1500


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  248 bits (632), Expect = 8e-63
 Identities = 157/392 (40%), Positives = 224/392 (57%), Gaps = 33/392 (8%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            +L SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM AS  I
Sbjct: 1140 FLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDI 1199

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP Q+ +T                        +   LA K +KVTV DI+ESM+
Sbjct: 1200 KTPIMTCPLQEGRTNE----------------------DADHLADKLRKVTVADIVESME 1237

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V VVP    +  V  +YKLK+K+++P  +P Y +I +ED  +T++V+++RELED I++H+
Sbjct: 1238 VSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHM 1297

Query: 537  KLLSRINGIH------------EIDGGESGFVSETQLKED--EDESGKKSQQVXXXXXXX 400
             LLSRI+GI             E D   +G +S  + ++D  +D+ G+++  +       
Sbjct: 1298 FLLSRISGIKDFLPESRSRASGEADEDVAGDMSHREERDDDNDDDDGERADDL------- 1350

Query: 399  XXXXXXXXXXXXXXDAQKRKQQATDEIDYDEDGMEPEASVVENLDTDSDKG-DDHISDGE 223
                          DAQKRK QATDE+DYD DG E E +  E+  ++ + G +  I  G+
Sbjct: 1351 ------------GLDAQKRKLQATDEMDYD-DGFEEELNEGESTASEEESGFESEIDQGD 1397

Query: 222  DQASGAED------EQKSIPMPKKSKTEEKRAKPDG------------NPKKVAKARGV* 97
            ++   + D        +++P+ K SK + K+   +              PK   K+R + 
Sbjct: 1398 NETEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSR-IS 1456

Query: 96   KNFDRNIFTEATGLDFEVHLKFSPKDPHILLS 1
            K+FDR IF EA  + FEVH KF+  +PHILL+
Sbjct: 1457 KDFDRAIFVEARKMHFEVHFKFT-NEPHILLA 1487


>ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Populus trichocarpa]
            gi|550335519|gb|ERP58815.1| hypothetical protein
            POPTR_0006s05420g [Populus trichocarpa]
          Length = 1132

 Score =  246 bits (627), Expect = 3e-62
 Identities = 160/390 (41%), Positives = 221/390 (56%), Gaps = 31/390 (7%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM ASA I
Sbjct: 573  FFTSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADI 632

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  + +T+                       + + L+ K KKVTV DI+ESM+
Sbjct: 633  KTPIMTCPLHEGRTKE----------------------DAERLSDKLKKVTVADIVESME 670

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V V+P    ND +  +YKLK+K++ P  +P + DI +E+  +T++VL+VRELED I+++L
Sbjct: 671  VSVMPFAVQNDDICRIYKLKMKLYTPAHYPQHADISVENWEETLEVLFVRELEDAIQNYL 730

Query: 537  KLLSRINGIHE-IDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXX 361
             LLS+I+GI   +    SG    T ++ +ED SG  S++                     
Sbjct: 731  VLLSKISGIKNFLKESHSG----TPIEAEEDVSGNISRE--GENDDDSDDEEGEEADDLG 784

Query: 360  XDAQKRKQQATDEIDYDE--DGM--EPEASVVENLDTDSDKGDDHISDGEDQASGAE--- 202
             D QKRKQQ TDE+DYD+  +G+  E E  +  +      + D   +D E + S  +   
Sbjct: 785  LDVQKRKQQVTDEMDYDDGSEGVLNEDEGDLSGSQAPSGSESDTEPADKESEISNTDMVD 844

Query: 201  -DEQ----------KSIPMPKKSKTE-----EKRAKPDGNPKKVAKARG-------V*KN 91
             D +           S P  +K  +E     E  +K     KK  KA+G       V K+
Sbjct: 845  YDSEYFEKPTHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKVRSKLVKKD 904

Query: 90   FDRNIFTEATGLDFEVHLKFSPKDPHILLS 1
            FDR+IF EA GL FE+HLKF+  +PHILL+
Sbjct: 905  FDRSIFVEAKGLHFEIHLKFT-NEPHILLA 933


>ref|XP_013672001.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Brassica
            napus]
          Length = 1643

 Score =  244 bits (624), Expect = 7e-62
 Identities = 152/362 (41%), Positives = 204/362 (56%), Gaps = 3/362 (0%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+A I
Sbjct: 1116 FFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADI 1175

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT +                      +   +  K +K+TV DII+SM+
Sbjct: 1176 KTPIMTCPLLKGKTND----------------------DASQITDKLRKITVADIIKSME 1213

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V V+P   H  +V +++KLKI +++PE +P + DI  ED  +T+ V ++R+LED I +H+
Sbjct: 1214 VSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMTVTFLRKLEDAIETHM 1273

Query: 537  KLLSRINGIH-EIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXX 361
            K+L RI GI  E D G     S  +   D+ +SGKK+                       
Sbjct: 1274 KMLLRIRGIKIEKDNGPK---SGNETDNDDSDSGKKT---GGDDDDDDDEGEDTEADDLG 1327

Query: 360  XDAQKRKQQATDEIDYDE--DGMEPEASVVENLDTDSDKGDDHISDGEDQASGAEDEQKS 187
             DAQKRK+QATDE DY+E  D  + E S V  +  D +  DD   DGE       +E   
Sbjct: 1328 ADAQKRKKQATDEQDYEESDDDEKNEPSSVSGV-VDPEMDDDEDEDGEVSKEDTPEEDNE 1386

Query: 186  IPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDPHIL 7
              +  ++K E K  + +   KK  + R V    DR+IF E  G  FEVH KF   +PHIL
Sbjct: 1387 DTL--EAKKEVKNVQQENKKKK--RQRFVSGEKDRHIFAEGKGKTFEVHFKFHKNEPHIL 1442

Query: 6    LS 1
            L+
Sbjct: 1443 LA 1444


>ref|XP_013604500.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Brassica
            oleracea var. oleracea]
          Length = 1643

 Score =  244 bits (624), Expect = 7e-62
 Identities = 152/362 (41%), Positives = 204/362 (56%), Gaps = 3/362 (0%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+A I
Sbjct: 1116 FFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADI 1175

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT +                      +   +  K +K+TV DII+SM+
Sbjct: 1176 KTPIMTCPLLKGKTND----------------------DASQITDKLRKITVADIIKSME 1213

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V V+P   H  +V +++KLKI +++PE +P + DI  ED  +T+ V ++R+LED I +H+
Sbjct: 1214 VSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMTVTFLRKLEDAIETHM 1273

Query: 537  KLLSRINGIH-EIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXX 361
            K+L RI GI  E D G     S  +   D+ +SGKK+                       
Sbjct: 1274 KMLLRIRGIKIEKDNGPK---SGNETDNDDSDSGKKT---GGDDDDDDDEGEDTEADDLG 1327

Query: 360  XDAQKRKQQATDEIDYDE--DGMEPEASVVENLDTDSDKGDDHISDGEDQASGAEDEQKS 187
             DAQKRK+QATDE DY+E  D  + E S V  +  D +  DD   DGE       +E   
Sbjct: 1328 ADAQKRKKQATDEQDYEESDDDEKNEPSSVSGV-VDPEMDDDEDEDGEVSKEDTPEEDNE 1386

Query: 186  IPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDPHIL 7
              +  ++K E K  + +   KK  + R V    DR+IF E  G  FEVH KF   +PHIL
Sbjct: 1387 DTL--EAKKEVKNVQQENKKKK--RQRFVSGEKDRHIFAEGKGKTFEVHFKFHKNEPHIL 1442

Query: 6    LS 1
            L+
Sbjct: 1443 LA 1444


>ref|XP_013663557.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like isoform X1
            [Brassica napus] gi|923714914|ref|XP_013663558.1|
            PREDICTED: DNA-directed RNA polymerase I subunit
            rpa1-like isoform X2 [Brassica napus]
            gi|923714919|ref|XP_013663559.1| PREDICTED: DNA-directed
            RNA polymerase I subunit rpa1-like isoform X3 [Brassica
            napus]
          Length = 1643

 Score =  244 bits (622), Expect = 1e-61
 Identities = 152/362 (41%), Positives = 204/362 (56%), Gaps = 3/362 (0%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+A I
Sbjct: 1116 FFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADI 1175

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT +                      +   +  K +K+TV DII+SM+
Sbjct: 1176 KTPIMTCPLLKGKTND----------------------DASQITDKLRKITVADIIKSME 1213

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V V+P   H  +V +++KLKI +++PE +P + DI  ED  +T+ V ++R+LED I +H+
Sbjct: 1214 VSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMTVTFLRKLEDAIETHM 1273

Query: 537  KLLSRINGIH-EIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXX 361
            K+L RI GI  E D G     S  +   D+ +SGKK+                       
Sbjct: 1274 KMLLRIRGIKIEKDNGPK---SGNETDNDDSDSGKKA---GGDDDDDDDEGEDTEADDLG 1327

Query: 360  XDAQKRKQQATDEIDYDE--DGMEPEASVVENLDTDSDKGDDHISDGEDQASGAEDEQKS 187
             D QKRK+QATDE DY+E  D  + E S V  +  D +  DD   DGE       +E K 
Sbjct: 1328 ADEQKRKKQATDEQDYEESDDDEKNEPSSVSGV-VDPEMDDDEDEDGEVSKEETPEEDKE 1386

Query: 186  IPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDPHIL 7
              +  ++K E K  + +   KK  + R V    DR+IF E  G  FEVH KF   +PHIL
Sbjct: 1387 DTL--EAKKEVKSVQQESKKKK--RQRFVSGEKDRHIFAEGKGKTFEVHFKFHKNEPHIL 1442

Query: 6    LS 1
            L+
Sbjct: 1443 LA 1444


>ref|XP_010546965.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Tarenaya
            hassleriana]
          Length = 1671

 Score =  243 bits (621), Expect = 2e-61
 Identities = 154/374 (41%), Positives = 216/374 (57%), Gaps = 15/374 (4%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM ASA I
Sbjct: 1146 YFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADI 1205

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT++                      +   +A K +K+TV DIIE M+
Sbjct: 1206 KTPIMSCPLLKGKTKD----------------------DANDIADKLRKITVADIIEGME 1243

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V VVP      ++ +++KLK+K+++PE +P    I  +D  +T+ V+++R LED I++H+
Sbjct: 1244 VSVVPFTILEKELCSIHKLKMKLYKPEHYPKNTGITAKDWEETLTVVFLRALEDAIQNHI 1303

Query: 537  KLLSRINGIHEI------------DGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXX 394
             LLS+++GI               D G+ G V++ Q++EDEDE  +              
Sbjct: 1304 VLLSKMSGIKNFVEETPSKAGNGEDDGD-GSVAQKQVREDEDEDAEGQD----------- 1351

Query: 393  XXXXXXXXXXXXDAQKRKQQATDEIDYDE--DGMEPEASVVENL-DTDSDKGDDHISDGE 223
                        DAQKRK+QATDE+DY+E  D  + E S V  + D + D  D+ +   +
Sbjct: 1352 ------IDDLGSDAQKRKKQATDEMDYEESSDEEKNEPSSVSGIEDPEVDNEDEDMEISK 1405

Query: 222  DQASGAEDEQKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEV 43
            +   G + E+      KK+K E+   K     KK  KA  V K  DR++F +A G++FEV
Sbjct: 1406 EDLVGDDGEEPKPEEGKKTKAEKTEKK-----KKKRKAFEV-KETDRHVFVKAKGMEFEV 1459

Query: 42   HLKFSPKDPHILLS 1
            H KF  K+PHILL+
Sbjct: 1460 HFKFK-KEPHILLA 1472


>ref|XP_008240981.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Prunus mume]
          Length = 1637

 Score =  243 bits (621), Expect = 2e-61
 Identities = 158/378 (41%), Positives = 206/378 (54%), Gaps = 19/378 (5%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            YL SLAQPGEPVGV+A  S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+  I
Sbjct: 1086 YLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAANDI 1145

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP QK +++                       E Q LA K KK+TV DIIESM 
Sbjct: 1146 KTPVMTCPLQKGRSKE----------------------EAQELADKLKKITVADIIESMK 1183

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V  VP F  + Q   +YKL++ +H PE     ++   ED  + +++++VRELED I++H+
Sbjct: 1184 VTFVPFFIQDGQTCRIYKLEMTLHIPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHI 1243

Query: 537  KLLSRINGIHEIDGGESGFVSETQLK----EDEDESGKKSQ--QVXXXXXXXXXXXXXXX 376
             LLS+I+GI         F  ++Q K     DE+ S K+SQ  +                
Sbjct: 1244 LLLSKISGI-------KNFTPDSQPKASNETDENLSEKRSQREEEDDDNGGADDGEHGEG 1296

Query: 375  XXXXXXDAQKRKQQATDEIDYDEDGMEPEASVVENLDTDSDKGDDHIS------DGEDQA 214
                  DA KRK QATDE+DY EDG + E    +  D D  + D+  +      DGE   
Sbjct: 1297 VEDFGLDAHKRKLQATDEMDY-EDGCDDEVREADLSDGDESEIDEEENEVEIGKDGEIGV 1355

Query: 213  SGAEDEQKSIPMPK-----KSKTEEKRAKPDGNPKKVAKARG--V*KNFDRNIFTEATGL 55
              A DE    P+ +     K K++EK+ K     +K  K R   V K  DR IF  A G 
Sbjct: 1356 IDASDEMPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFVSAKGF 1415

Query: 54   DFEVHLKFSPKDPHILLS 1
             FEVH +F+  +PHILLS
Sbjct: 1416 HFEVHFRFTDNEPHILLS 1433


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  242 bits (617), Expect = 4e-61
 Identities = 152/372 (40%), Positives = 202/372 (54%), Gaps = 13/372 (3%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            YL SLAQPGEPVGV+A  S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+  I
Sbjct: 1061 YLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAANDI 1120

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP QK +++                       E Q LA K KK+TV DIIESM 
Sbjct: 1121 KTPVMTCPLQKGRSKE----------------------EAQELADKLKKITVADIIESMK 1158

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V  VP F  + Q   +YKL++ +H PE     ++   ED  + +++++VRELED I++H+
Sbjct: 1159 VTFVPFFIQDGQTCRIYKLEMTLHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHI 1218

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXXX 358
             LLS+I+GI      +S   +  +  E+  E   + ++                      
Sbjct: 1219 LLLSKISGIKNFT-PDSQPKASNETDENLPEKRSQREEEDDDNGGADDGEHGEGVEDFGL 1277

Query: 357  DAQKRKQQATDEIDYDEDGMEPEASVVENLDTDSDKGDDHIS------DGEDQASGAEDE 196
            DA KRK QATDE+DY EDG + E    +  D D  + D+  +      DGE     A DE
Sbjct: 1278 DAHKRKLQATDEMDY-EDGCDDEVREADLSDGDESEIDEEENEVEIGKDGEIGVIDANDE 1336

Query: 195  QKSIPMPK-----KSKTEEKRAKPDGNPKKVAKARG--V*KNFDRNIFTEATGLDFEVHL 37
                P+ +     K K++EK+ K     +K  K R   V K  DR IF  A G  FEVH 
Sbjct: 1337 MPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFVSAKGFHFEVHF 1396

Query: 36   KFSPKDPHILLS 1
            +F+  +PHILLS
Sbjct: 1397 RFADNEPHILLS 1408


>ref|XP_009116470.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Brassica rapa]
          Length = 1640

 Score =  240 bits (613), Expect = 1e-60
 Identities = 151/362 (41%), Positives = 202/362 (55%), Gaps = 3/362 (0%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+A I
Sbjct: 1116 FFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADI 1175

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT +                      +   +  K +K+TV DII+SM+
Sbjct: 1176 KTPIMTCPLLKGKTND----------------------DASQITDKLRKITVADIIKSME 1213

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V V+P   H  +V +++KLKI +++PE +P + DI  ED  +T+ V ++R+LED I +H+
Sbjct: 1214 VSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMTVTFLRKLEDAIETHM 1273

Query: 537  KLLSRINGIH-EIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXX 361
            K+L RI GI  E D G     S  +   D+ +SGKK+                       
Sbjct: 1274 KMLLRIRGIKIEKDNGPK---SGNETDNDDSDSGKKA---GGDDDDDDDEGEDTEAGELG 1327

Query: 360  XDAQKRKQQATDEIDYDE--DGMEPEASVVENLDTDSDKGDDHISDGEDQASGAEDEQKS 187
             D QKRK+QATDE DY+E  D  + E S V  +  D +  DD   DGE       +E   
Sbjct: 1328 ADEQKRKKQATDEQDYEESDDDEKNEPSSVSGV-VDPEMDDDEDEDGEVSKEETPEED-- 1384

Query: 186  IPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKDPHIL 7
                 ++K E K  + +   KK  + R V    DR+IF E  G  FEVH KF   +PHIL
Sbjct: 1385 ---TLEAKKEVKSVQQESKKKK--RQRFVSGEKDRHIFAEGKGKTFEVHFKFHKNEPHIL 1439

Query: 6    LS 1
            L+
Sbjct: 1440 LA 1441


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score =  240 bits (612), Expect = 2e-60
 Identities = 149/371 (40%), Positives = 209/371 (56%), Gaps = 12/371 (3%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+A I
Sbjct: 1149 FFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADI 1208

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT+                       +   +  K +K+TV DII+SMD
Sbjct: 1209 KTPIMTCPLLKGKTKE----------------------DANDITGKLRKITVADIIKSMD 1246

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            + VVP   + ++V +++KLKI +++PE +P + DI  +D  +T+ V+++R+LED I  H+
Sbjct: 1247 LSVVPYTVYKNEVCSIHKLKINLYKPEHYPKHTDITEKDWEETMTVVFLRKLEDAIEIHM 1306

Query: 537  KLLSRINGIHEIDGGESG-------FVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXX 379
            K+L RI GI    G E+G        VS  Q K+D D+ G+ ++                
Sbjct: 1307 KMLHRIRGICNDKGPEAGNETDNDDSVSGKQNKDDGDDDGEGTE---------------- 1350

Query: 378  XXXXXXXDAQKRKQQATDEIDYDEDG----MEPEA-SVVENLDTDSDKGDDHISDGEDQA 214
                   DAQK+K+Q TDE+DY+E+      EP + S VE+ + DS+  D  +S  ED  
Sbjct: 1351 -VDDLGSDAQKQKKQVTDEMDYEENSEDETNEPSSISGVEDPEMDSENEDAEVSK-EDTP 1408

Query: 213  SGAEDEQKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLK 34
               E+   S     + + E K  K      K  + + V    DR+IF    G  FEVH +
Sbjct: 1409 EPQEEADVSKEETMEPQKEVKAVKNVKEQSKKKRRKFVGATSDRHIFVRGEGEKFEVHFQ 1468

Query: 33   FSPKDPHILLS 1
            F+  DPHILL+
Sbjct: 1469 FATDDPHILLA 1479


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Solanum
            lycopersicum]
          Length = 1677

 Score =  239 bits (609), Expect = 4e-60
 Identities = 152/368 (41%), Positives = 200/368 (54%), Gaps = 9/368 (2%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            Y SSLA  GEPVGV+A  S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM AS  I
Sbjct: 1148 YFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAI 1207

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CPF   K++N                      + QSL AK KK+TV D+IESM+
Sbjct: 1208 KTPIMTCPFLGWKSKN----------------------DAQSLLAKVKKITVADMIESME 1245

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            V ++P   +N QVS LYKL +K+ +  DF     +  EDC  T+  +++RELED I SHL
Sbjct: 1246 VKLLPLSIYNHQVSQLYKLTVKL-KKHDF-----VSSEDCEYTLKFVFLRELEDAIESHL 1299

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXXX 358
             LLS+INGI           S   +  DE E    S +                      
Sbjct: 1300 ALLSKINGIQNFK------TSSESVDSDETEENASSTRREEEMLDDDDDDEDERTEDLSS 1353

Query: 357  DAQKRKQQATDEIDYDEDGMEPEASVVENLDTDSDKGD--DHISDGEDQASGAEDEQKSI 184
            DAQKRKQQ TDE+DYD+D  E EA      + + +K +  D I +G+++ +G    ++  
Sbjct: 1354 DAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNGDEEENGDRGNEEHT 1413

Query: 183  PMPK-------KSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSP 25
               +        +KT + + K     KK  K R   K+ DR +F +  GL FEVH +F  
Sbjct: 1414 SKLQSTEEDISNTKTSKSKTKTTVKQKK-KKERRSKKDSDRCVFVDVEGLHFEVHFRF-V 1471

Query: 24   KDPHILLS 1
             +PHILL+
Sbjct: 1472 NEPHILLA 1479


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|75266428|sp|Q9SVY0.1|NRPA1_ARATH RecName:
            Full=DNA-directed RNA polymerase I subunit 1; AltName:
            Full=DNA-directed RNA polymerase I subunit RPA1;
            Short=DNA polymerase I subunit A1; AltName: Full=Nuclear
            RNA polymerase A1 gi|4678281|emb|CAB41189.1| DNA-directed
            RNA polymerase I 190K chain-like protein [Arabidopsis
            thaliana] gi|332646163|gb|AEE79684.1| nuclear RNA
            polymerase A1 [Arabidopsis thaliana]
          Length = 1670

 Score =  238 bits (608), Expect = 5e-60
 Identities = 143/366 (39%), Positives = 212/366 (57%), Gaps = 7/366 (1%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+A I
Sbjct: 1147 FFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANI 1206

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT+                       +   +  + +K+TV DII+SM+
Sbjct: 1207 KTPIMTCPLLKGKTKE----------------------DANDITDRLRKITVADIIKSME 1244

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            + VVP   + ++V +++KLKI +++PE +P + DI  ED  +T+  +++R+LED I +H+
Sbjct: 1245 LSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHM 1304

Query: 537  KLLSRINGIHEIDGGESGFVSETQLKEDEDESGKKSQQVXXXXXXXXXXXXXXXXXXXXX 358
            K+L RI GIH      +G ++  +   D+  SGK+++                       
Sbjct: 1305 KMLHRIRGIH---NDVTGPIAGNETDNDDSVSGKQNED------DGDDDGEGTEVDDLGS 1355

Query: 357  DAQKRKQQATDEIDYDEDG----MEPEA-SVVENLDTDSDKGDDHIS--DGEDQASGAED 199
            DAQK+K+Q TDE+DY+E+      EP + S VE+ + DS+  D  +S  D  +    + +
Sbjct: 1356 DAQKQKKQETDEMDYEENSEDETNEPSSISGVEDPEMDSENEDTEVSKEDTPEPQEESME 1415

Query: 198  EQKSIPMPKKSKTEEKRAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLKFSPKD 19
             QK +   K  K + K+ +     +K  +A+      DR+IF +  G  FEVH KF+  D
Sbjct: 1416 PQKEVKGVKNVKEQSKKKR-----RKFVRAKS-----DRHIFVKGEGEKFEVHFKFATDD 1465

Query: 18   PHILLS 1
            PHILL+
Sbjct: 1466 PHILLA 1471


>ref|XP_010504699.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Camelina
            sativa]
          Length = 1662

 Score =  238 bits (607), Expect = 6e-60
 Identities = 149/371 (40%), Positives = 212/371 (57%), Gaps = 12/371 (3%)
 Frame = -1

Query: 1077 YLSSLAQPGEPVGVIAAPSIGEPSTQMTLNTFHHAGRGDMNVTLGVPRLQEILMRASAKI 898
            + +SLAQPGEPVGV+AA S+GEPSTQMTLNTFH AGRG+MNVTLG+PRLQEILM A+A I
Sbjct: 1138 FFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANI 1197

Query: 897  LSPAMICPFQKEKTENITHRLAAASNEIPTVGNIINSVEVQSLAAKFKKVTVEDIIESMD 718
             +P M CP  K KT+                       +   +  K +K+TV DII+SM+
Sbjct: 1198 KTPIMTCPLLKGKTKE----------------------DASHITDKLRKITVADIIKSME 1235

Query: 717  VHVVPCFTHNDQVSTLYKLKIKVHQPEDFPPYMDIKLEDCMQTIDVLYVRELEDMIRSHL 538
            + VVP   H ++V +++KLKIK+++PE +P + DI  ED  +T+  +++R+LED I  H+
Sbjct: 1236 LSVVPYTVHKNEVCSIHKLKIKLYKPEHYPKHTDITEEDWEETMTAVFLRKLEDAIDIHM 1295

Query: 537  KLLSRINGIHEIDGGESGFVSET------QLKEDEDESGKKSQQVXXXXXXXXXXXXXXX 376
            K+L RI GI         FV +T      +   D+  SGK+++                 
Sbjct: 1296 KMLHRIRGIR-------NFVEDTSPRAGNETDNDDSVSGKQTED-------DDDDGEGTE 1341

Query: 375  XXXXXXDAQKRKQQATDEIDYDEDG----MEPEA-SVVENLDTDSDKGDDHISDGEDQAS 211
                  DAQKRKQQA DE+DY+E+      EP + S VE+ + DS+  D  +S    +  
Sbjct: 1342 VDDLGSDAQKRKQQAIDEMDYEENSDNETNEPSSISGVEDPEMDSEDEDAEVS----KEG 1397

Query: 210  GAEDEQKSIPMPKKSKTEEK-RAKPDGNPKKVAKARGV*KNFDRNIFTEATGLDFEVHLK 34
              E +++++   KK KT +K + +     +K  +A+G     DRNI  E  G  FEVH +
Sbjct: 1398 TPEPQEETLEPQKKVKTVKKVKEQSKKKRRKFVEAKG-----DRNILVECKGKKFEVHFR 1452

Query: 33   FSPKDPHILLS 1
            F   +PHILL+
Sbjct: 1453 FCAGEPHILLA 1463