BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00046855
         (919 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...   167   1e-38
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   162   3e-37
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   160   1e-36
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   156   2e-35
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]           153   2e-34
emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]        153   2e-34
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...   151   6e-34
emb|CAN69706.1| hypothetical protein VITISV_037595 [Vitis vinifera]   150   1e-33
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...   150   1e-33
gb|EEC80484.1| hypothetical protein OsI_22718 [Oryza sativa Indi...   149   2e-33
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                149   2e-33
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     149   2e-33
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc...   149   4e-33
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   148   5e-33
gb|AAB82754.1| retrofit [Oryza longistaminata]                        147   1e-32
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   146   2e-32
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  146   2e-32
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   146   2e-32
ref|XP_008382851.1| PREDICTED: uncharacterized protein LOC103445...   145   3e-32
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   145   3e-32

>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score =  167 bits (423), Expect = 1e-38
 Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 21/252 (8%)
 Frame = +3

Query: 222  RSPSNGEVSCQIYRKRNHTADRCWFRYDQQKVPQH----------KPPTAYLAFPGDSSG 371
            R+       CQI  K  H A  CW R+D Q  P+           + P A +A PG    
Sbjct: 305  RANPGSRPQCQICCKIGHVATECWHRFDNQFQPKASHSNQFSSSAQDPQALMAAPGLLGE 364

Query: 372  AQWVTDSGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLN 551
              W  D+GATHH+ +D+ NL + + + G D V VGNG  L   H G++   ++     L 
Sbjct: 365  TPWFLDTGATHHVTSDLANLSLHNPFSGDDKVIVGNGKGLYVLHTGHSSIPTSQGALLLK 424

Query: 552  YVYHVPKIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLY-VLDGL 728
             V HVPKI +NL+   + C DN+ + EF+  +F VKD+ T+A+LLKG  + GLY V    
Sbjct: 425  NVLHVPKIAANLVSVQKLCHDNNAYVEFYPSYFAVKDQKTQAILLKGGLDKGLYSVPSAY 484

Query: 729  GDLNNQAKSF--FSA-------SIPIWHQRLGHPMLSTVSKIVNKFSLP-FLNKNFGFCH 878
                 QA+ F  FS        S+ +WH RLGHP L+ V+K++N ++LP F  +N   C 
Sbjct: 485  SSHAPQARVFQIFSTSSSTSIDSMRLWHNRLGHPSLAIVNKVLNHYNLPVFSLQNKLLCD 544

Query: 879  SCHISKSKRLPF 914
            SC ++KS +LPF
Sbjct: 545  SCQLAKSHKLPF 556


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  162 bits (410), Expect = 3e-37
 Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 4/227 (1%)
 Frame = +3

Query: 249 CQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADVKN 428
           CQ+  +  HTA  CW+R+D+  VP  +  +A  A   + S   W TD+GAT H+  D+  
Sbjct: 282 CQVCSRVGHTALNCWYRFDENYVPDQR--SANSAAHQNGSNVPWYTDTGATDHITGDLDR 339

Query: 429 LCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLFFHQFC 608
           L +  +Y GTD +   NG  +  ++IGNA+  +++R   L  V HVP    NL+  H+  
Sbjct: 340 LTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLT 399

Query: 609 KDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLNNQAKSFFSASIPI--W 782
            DN VF EFH+  F++KD+ T+A+LL G   +GLY L    DL  +  +F S  +P+  W
Sbjct: 400 NDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLK-HNFSSTRVPLEHW 458

Query: 783 HQRLGHPMLSTVSKIVNKFSLPFLNKN--FGFCHSCHISKSKRLPFS 917
           H+RLGHP    V ++++  +LP L+ N     C +C  +K+ +LP++
Sbjct: 459 HKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYT 505


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score =  160 bits (406), Expect = 1e-36
 Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 6/239 (2%)
 Frame = +3

Query: 216 HNRSPSNGEVS----CQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWV 383
           H R  + G V     CQ+  KR HTA  CW+RYD+  VP  K   A  A         W 
Sbjct: 263 HGRGRTPGGVDKRPICQVCFKRGHTAADCWYRYDEDYVPDAKHVAA-AAVNSYGVDTNWY 321

Query: 384 TDSGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNA-VFTSNNRKFCLNYVY 560
            D+GAT H+  ++  L +  +Y+G + +   +G  +  +HIG+A V   N+R   L  V 
Sbjct: 322 IDTGATDHVTGELDKLTMKEKYNGGEQIHTASGAGMDISHIGHAIVHNPNSRNIHLRNVL 381

Query: 561 HVPKIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLN 740
           +VP+ K NL+  H+   DN  F E H D+F +KD+ TR  LLKG +   LY L       
Sbjct: 382 YVPQAKKNLVSVHRLVNDNSAFLELHRDYFFLKDQITRKTLLKGRSWRRLYPLP--HSSL 439

Query: 741 NQAKSFFSASIPIWHQRLGHPMLSTVSKIVNKFSLPFLN-KNFGFCHSCHISKSKRLPF 914
            QA S    S+  WH RLGHP ++TV ++VNKFSLP  +  +   C++C  +KS +LPF
Sbjct: 440 KQAYSAIKLSLDRWHHRLGHPSITTVKQVVNKFSLPCSDLSSESVCNACQQAKSHQLPF 498


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  156 bits (395), Expect = 2e-35
 Identities = 94/273 (34%), Positives = 141/273 (51%), Gaps = 38/273 (13%)
 Frame = +3

Query: 213  PHNRSPSNGEVSCQIYRKRNHTADRCWFRYDQQ-KVPQH-----KPPTAYLAFPGDSSGA 374
            P N    N + +CQ+  K  H   +C++R+D   +VPQ+       P AY +F    +G 
Sbjct: 298  PWNSDNQNEKPACQLCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAYYSFSPQVNGV 357

Query: 375  ----------QWVTDSGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFT 524
                       W  DSGA++H+  + +NL    E+ G + V VGNG  L   HIG + F 
Sbjct: 358  IPTSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQSEFL 417

Query: 525  S--NNRKFCLNYVYHVPKIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMN 698
            S  +++   LN++ HVP I  NLL   +F KDN VFFEFH+D   VKD+ T+A+L+ G  
Sbjct: 418  SPFSSKPLLLNHLLHVPSITKNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQAVLMVGKV 477

Query: 699  ENGLYVLD----GLGDLNNQAKS---------------FFSASIPIWHQRLGHPMLSTVS 821
             +GLY  D     L    + +KS                 S++  +WH+RLGHP  +T+ 
Sbjct: 478  RDGLYAFDSSHLALRPTQSLSKSPSVVASSFSSKVCTTSLSSTFDLWHKRLGHPSAATIK 537

Query: 822  KIVNKFSLPFLNK-NFGFCHSCHISKSKRLPFS 917
             +++K ++  +NK +  FC SC + K  R PFS
Sbjct: 538  NVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFS 570


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score =  153 bits (386), Expect = 2e-34
 Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
 Frame = +3

Query: 246 SCQIYRKRNHTADRCWFRYD----------QQKVPQHKPPTAYLAFPGDSSGAQWVTDSG 395
           SCQ+  K  HT   CW R+D          QQ   Q K  +A  ++  D++   W  D+ 
Sbjct: 259 SCQLCGKEGHTVHTCWKRFDRSFSGNDVIFQQHHQQAKSASAVSSYGVDTN---WYLDTA 315

Query: 396 ATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKI 575
           AT H+  ++K L     Y G + V   N   +  +HIG  +F + NR   LN V ++PK 
Sbjct: 316 ATDHITGELKKLTTKERYHGNEQVHAANSAGMSISHIGRTIFHTPNRNLALNNVLYIPKA 375

Query: 576 KSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLY--VLDGLGDLNNQA 749
           K NL+  H+   DNH F E H  FF VKD+TT++ LL+G +  GLY   L        QA
Sbjct: 376 KKNLVSAHRLAYDNHAFVEIHPKFFCVKDQTTKSTLLQGRSRGGLYPIPLKSTTPQGRQA 435

Query: 750 KSFFSASIPIWHQRLGHPMLSTVSKIVNKFSLPFL-NKNFGFCHSCHISKSKRLPFS 917
               S++   WH RLGHP  S VS+++ K ++P   ++    C +C  +KS +LP+S
Sbjct: 436 LVSTSSAESRWHSRLGHPSFSVVSRVLRKHNIPVSESREERVCDACQQAKSHQLPYS 492


>emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]
          Length = 1131

 Score =  153 bits (386), Expect = 2e-34
 Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
 Frame = +3

Query: 246 SCQIYRKRNHTADRCWFRYD----------QQKVPQHKPPTAYLAFPGDSSGAQWVTDSG 395
           SCQ+  K  HT   CW R+D          QQ   Q K  +A  ++  D++   W  D+ 
Sbjct: 259 SCQLCGKEGHTVHTCWKRFDRSFSGNDVIFQQHHQQAKSASAVSSYGVDTN---WYLDTA 315

Query: 396 ATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKI 575
           AT H+  ++K L     Y G + V   N   +  +HIG  +F + NR   LN V ++PK 
Sbjct: 316 ATDHITGELKKLTTKERYHGNEQVHAANSAGMSISHIGRTIFHTPNRNLALNNVLYIPKA 375

Query: 576 KSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLY--VLDGLGDLNNQA 749
           K NL+  H+   DNH F E H  FF VKD+TT++ LL+G +  GLY   L        QA
Sbjct: 376 KKNLVSAHRLAYDNHAFVEIHPKFFCVKDQTTKSTLLQGRSRGGLYPIPLKSTTPQGRQA 435

Query: 750 KSFFSASIPIWHQRLGHPMLSTVSKIVNKFSLPFL-NKNFGFCHSCHISKSKRLPFS 917
               S++   WH RLGHP  S VS+++ K ++P   ++    C +C  +KS +LP+S
Sbjct: 436 LVSTSSAESRWHSRLGHPSFSVVSRVLRKHNIPVSESREERVCDACQQAKSHQLPYS 492


>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
           Japonica Group] gi|31431217|gb|AAP53032.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1042

 Score =  151 bits (382), Expect = 6e-34
 Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 4/233 (1%)
 Frame = +3

Query: 231 SNGEVSCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHL 410
           ++G   C +  KR H A  CW RYD+  VP  K   A     G  S   W  D+GAT H+
Sbjct: 172 NDGRPLCHVCYKRGHVAANCWHRYDEDYVPDDKLVAAATYSHGADSN--WYVDTGATDHI 229

Query: 411 NADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLL 590
            + ++ L     Y G D +   +G  ++  HIG+A+  +  R   LN V HVP+   NL+
Sbjct: 230 TSQLEKLNTREVYKGHDQIHTASGAGMKIKHIGHAIVHTPTRPLHLNNVLHVPQAAKNLI 289

Query: 591 FFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLNNQAKSFFSA- 767
              +   DN VF E H+ +F++KD+TTR+ +LKG   +GLY L       +  K  F+  
Sbjct: 290 SATKLASDNSVFVEIHSKYFLIKDRTTRSTVLKGPRRHGLYPLPS----TSSTKQAFAVA 345

Query: 768 -SIPIWHQRLGHPMLSTVSKIVNKFSLPFLNKN--FGFCHSCHISKSKRLPFS 917
            S+  WH RLGHP +  V K+++   LP L ++     C +C  +KS +LP+S
Sbjct: 346 PSLERWHSRLGHPSIPIVMKVISSNKLPCLRESNKESVCDACQKAKSHQLPYS 398


>emb|CAN69706.1| hypothetical protein VITISV_037595 [Vitis vinifera]
          Length = 431

 Score =  150 bits (379), Expect = 1e-33
 Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
 Frame = +3

Query: 228 PSNGE----VSCQIYRKRNHTADRCWFRYDQQKVPQHKPP--TAYLAFPGDSSGAQWVTD 389
           PSN +      CQ   +  HT   C         PQ KP   TA  A        +W+ D
Sbjct: 128 PSNNQRPYRPKCQFCDELGHTTKNC---------PQLKPSEITANSATTSTMKEQKWLLD 178

Query: 390 SGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVP 569
           S A+H++  D++NL I  EYDGTD V +G+G+ L  +H+G+    S NR F L     VP
Sbjct: 179 SAASHNIIGDLQNLSIHSEYDGTDEVVLGDGSGLAVSHVGSLAIHSPNRTFILRDTLCVP 238

Query: 570 KIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDG--LGDLNN 743
            +K N++  H F   N+V+ EFH  +F+VK+  T A+LL+G  EN +Y+     +G+ + 
Sbjct: 239 NLKKNMISVHHFTSQNNVYVEFHPSYFLVKEPITGAILLRGSCENDIYIFPESLVGNFSQ 298

Query: 744 QAKSFFS-ASIPIWHQRLGHPMLSTVSKIVNKFSLP-FLNKNFGFCHSCHISKSKRLPF 914
           +  +     S+  WH+RLGHP    V  +V+ FSLP   NK    C SC I+KS + PF
Sbjct: 299 KVANVHERTSLDGWHKRLGHPSYPIVKNLVSTFSLPTTTNKMTMLCRSCSINKSHQQPF 357


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1241

 Score =  150 bits (379), Expect = 1e-33
 Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
 Frame = +3

Query: 234 NGEVSCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLN 413
           N    CQ+  KR H A  CW RYD+  VP  +   A  A+  D++   W  D+GAT H+ 
Sbjct: 265 NDRPICQVCLKRGHVAAECWHRYDETYVPDERSAAAAAAYGIDTN---WYLDTGATDHIT 321

Query: 414 ADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLF 593
            ++  L +  +Y G D +   +G  ++  HIG++V  +  R+  L  + HVP+ K NL+ 
Sbjct: 322 NELDKLDVREKYKGGDKIHTASGAGMEIKHIGDSVIHTPTRELHLKNILHVPQAKKNLIS 381

Query: 594 FHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLNNQAKSFFSASI 773
            H+   DN  F E H+++F++KD+ TR  +LKG     LY L       + AK   +A+ 
Sbjct: 382 AHRLAMDNFAFLEVHSNYFLIKDRVTRNTILKGRCRRRLYSLP-----TSPAKQVHAATT 436

Query: 774 PI---WHQRLGHPMLSTVSKIVNKFSLP---FLNKNFGFCHSCHISKSKRLPF 914
           P    WH RLGHP +  V+++++K +LP     NK+   C +C   KS +LP+
Sbjct: 437 PSFSRWHSRLGHPAVPIVTRVLSKNNLPCSTVANKD-SICDACQKGKSHQLPY 488


>gb|EEC80484.1| hypothetical protein OsI_22718 [Oryza sativa Indica Group]
          Length = 506

 Score =  149 bits (377), Expect = 2e-33
 Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
 Frame = +3

Query: 234 NGEVSCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLN 413
           N    CQ+  KR H A  CW RYD+  VP  +   A  A+  D++   W  D+GAT H+ 
Sbjct: 265 NDRPICQVCLKRGHVAAECWHRYDETYVPDERSAAAAAAYGIDTN---WYLDTGATDHIT 321

Query: 414 ADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLF 593
            ++  L +  +Y G D +   +G  ++  HIG++V  +  R+  L  + HVP+ K NL+ 
Sbjct: 322 NELDKLDVWEKYKGGDKIHTASGAGMEIKHIGDSVIHTPTRELHLKNILHVPQAKKNLIS 381

Query: 594 FHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLNNQAKSFFSASI 773
            H+   DN  F E H+++F++KD+ TR  +LKG     LY L       + AK   +A+ 
Sbjct: 382 AHRLAMDNFAFLEVHSNYFLIKDRATRNTILKGRCRRRLYSLP-----TSPAKQVHAATT 436

Query: 774 PI---WHQRLGHPMLSTVSKIVNKFSLP---FLNKNFGFCHSCHISKSKRLPF 914
           P    WH RLGHP +  V+++++K +LP     NK+   C +C   KS +LP+
Sbjct: 437 PSFSRWHSRLGHPAVPIVTRVLSKNNLPCSTVANKD-SICDACQKGKSHQLPY 488


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  149 bits (377), Expect = 2e-33
 Identities = 94/308 (30%), Positives = 146/308 (47%), Gaps = 6/308 (1%)
 Frame = +3

Query: 12   VEGMDIQTYTSHLLSFEMRVDQQLAQIQAPVANFVA---SSSTATTKNEXXXXXXXXXXX 182
            VE + +    S LLSFE R+  + AQ  A +AN        S     N            
Sbjct: 329  VEPVTVAEVYSQLLSFENRLAMRQAQATANMANRGGRGGGGSRGGGANPGRGRGATRGRG 388

Query: 183  XXXXXXXXXMPHNRSPSNGEVSCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGD 362
                         RS  N  + CQ+  KR H A  CW R+D+  VP  K   A  A    
Sbjct: 389  AAPGRGRGNNQQQRSYDNRPL-CQVCYKRGHVAADCWHRFDEDFVPDDKLVAA--AIHTH 445

Query: 363  SSGAQWVTDSGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKF 542
            +  + W  D+GAT H+ ++++ L     Y G D +   +G+ ++  HIG+++  +  R  
Sbjct: 446  ARDSNWYVDTGATDHITSELEKLTARDVYKGHDQIHTASGSGMEIKHIGHSIVHTPTRPL 505

Query: 543  CLNYVYHVPKIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLD 722
             LN V HVP+   NL+  H+   DN VF E H+  F++KD+ TR  +LKG  + GLY + 
Sbjct: 506  HLNNVLHVPQANKNLISAHKLAADNSVFLEIHSKHFLIKDQATRRTVLKGRRQKGLYPVP 565

Query: 723  GLGDLNN-QAKSFFSASIPIWHQRLGHPMLSTVSKIVNKFSLPFLNKN--FGFCHSCHIS 893
                 ++ +     + S   WH RLGH     +S++++K  LP L+++     C +C  +
Sbjct: 566  SASPPSSAKVVCAVTPSFERWHSRLGHSSAPIISRVISKNKLPCLDESNKESVCDACLKA 625

Query: 894  KSKRLPFS 917
            KS +LP+S
Sbjct: 626  KSHQLPYS 633


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  149 bits (377), Expect = 2e-33
 Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 2/225 (0%)
 Frame = +3

Query: 246 SCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADVK 425
           +CQ+  K  H    CW  YD   VP  +   A  ++  DS+   W  D+GAT H+  +++
Sbjct: 275 TCQLCSKVGHVVADCWHCYDDSFVPDARVAAA-ASYGVDSN---WYVDTGATDHITNELE 330

Query: 426 NLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLFFHQF 605
            L     Y+G + +   +G+ +   HIG +   +  R   L  + HVP+ K NL+  H+ 
Sbjct: 331 KLTTRDRYNGKEQIHTASGSGMDIKHIGQSTIRTPTRNLYLRNILHVPRTKKNLISAHRL 390

Query: 606 CKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLNNQAKSFFSASIPIWH 785
             DNH F E H  FF +KD+ T+  LL+G   NGLY L      + Q       ++ IWH
Sbjct: 391 AVDNHAFVEVHPRFFAIKDQITKNTLLRGPCCNGLYPLPASTSSSKQVLGAIKPTVSIWH 450

Query: 786 QRLGHPMLSTVSKIVNKFSLPFL--NKNFGFCHSCHISKSKRLPF 914
            RLGHP    V K+V+  +LP L  +K  G C +C   KS +LPF
Sbjct: 451 SRLGHPSWQIVQKVVSHNNLPCLGESKELGVCDACQKGKSHQLPF 495


>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 807

 Score =  149 bits (375), Expect = 4e-33
 Identities = 84/229 (36%), Positives = 122/229 (53%), Gaps = 6/229 (2%)
 Frame = +3

Query: 249 CQIYRKRNHTADRCWFRYDQQKVP--QHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADV 422
           CQ+  KR H A +CW R+D+  VP  +H    A  A+  D++   W  DSGAT H+ +++
Sbjct: 248 CQVCYKRGHVAAKCWHRFDENYVPDERHVAAAAQAAYAVDTN---WYIDSGATDHITSEL 304

Query: 423 KNLCIPHEYDGTDTVKVGNGNTLQTAHIGNA-VFTSNNRKFCLNYVYHVPKIKSNLLFFH 599
             L +  +Y GT+ +   NG  +Q  HIG+A V T +N    L  V HVP    NL+   
Sbjct: 305 DKLTVREKYKGTEKIHTANGVGMQIKHIGHALVHTPDNHTLHLKNVLHVPHATKNLISAS 364

Query: 600 QFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLNNQAKSFFSA--SI 773
           +  +DN+VF E H+ +F+VKD+  R ++LKG    GLY        +  AK   S   S 
Sbjct: 365 RLAEDNYVFLEIHSKYFLVKDRAMRNIILKGRCRKGLYPFP-----SEDAKYVCSVAPSF 419

Query: 774 PIWHQRLGHPMLSTVSKIVNKFSLPFLNKNF-GFCHSCHISKSKRLPFS 917
             WH RL HP    VS++VN+  LP    +    C +C  +KS +LP+S
Sbjct: 420 ARWHSRLSHPTTPIVSRVVNQNKLPCQKSHSESVCDACQKAKSHQLPYS 468


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  148 bits (374), Expect = 5e-33
 Identities = 85/247 (34%), Positives = 119/247 (48%), Gaps = 24/247 (9%)
 Frame = +3

Query: 249  CQIYRKRNHTADRCWFRYD---------QQKVPQHKPPT-----AYLAFPGDSSGAQWVT 386
            CQ+  K  HT  RC+ R+D            V  +KP       A +A P   S   W  
Sbjct: 321  CQLCGKFGHTVVRCYHRFDINFQGYNPNMDTVQTNKPNAKNQVQAMMASPSTISDEAWFF 380

Query: 387  DSGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHV 566
            D+GATHHL+  +  L     Y G D V VGNG  L+  H G   F S+++ F L  V HV
Sbjct: 381  DTGATHHLSQSIDPLSDVQPYMGNDKVIVGNGKHLRILHTGTTFFPSSSKTFQLRQVLHV 440

Query: 567  PKIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDG------- 725
            P I +NL+   QFC DN+ FFEFH  FF VKD+ T+ +LL+G  E+GLY           
Sbjct: 441  PDIATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYRFPARFVPSPA 500

Query: 726  ---LGDLNNQAKSFFSASIPIWHQRLGHPMLSTVSKIVNKFSLPFLNKNFGFCHSCHISK 896
                   +  +    + +  +WH RLGHP  + +  I+   ++         C +C  +K
Sbjct: 501  AFVSSSYDRSSNLSLTTTTTLWHSRLGHPADNILKHILTSCNISHQCHKNNVCCACQFAK 560

Query: 897  SKRLPFS 917
            S +LPF+
Sbjct: 561  SHKLPFN 567


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  147 bits (370), Expect = 1e-32
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 4/227 (1%)
 Frame = +3

Query: 246 SCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADVK 425
           +CQ+  KR HTA  CW+R+D+  V   K   A     G  +   W  D+GAT H+  +++
Sbjct: 279 TCQVCFKRGHTAADCWYRFDEDYVADEKLVAAATNSYGIDTN--WYIDTGATDHITGELE 336

Query: 426 NLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLFFHQF 605
            L    +Y+G + +   +G  +  +HIG+ +  + +R   LN V +VP+ K NL+   Q 
Sbjct: 337 KLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTPSRNIHLNNVLYVPQAKKNLISASQL 396

Query: 606 CKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGL--GDLNNQAKSFFSASIPI 779
             DN  F E H+ FF +KD+ TR +LL+G   +GLY +        N QA      S+  
Sbjct: 397 AADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPIPKFFGRSTNKQALGAAKLSLSR 456

Query: 780 WHQRLGHPMLSTVSKIVNKFSLP--FLNKNFGFCHSCHISKSKRLPF 914
           WH RLGHP L  V +++++ +LP    + N   C++C  +KS +LP+
Sbjct: 457 WHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPY 503


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
           sativa Japonica Group]
          Length = 1448

 Score =  146 bits (369), Expect = 2e-32
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 4/227 (1%)
 Frame = +3

Query: 246 SCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADVK 425
           +CQ+  KR HTA  CW+R+D+  V   K   A     G  +   W  D+GAT H+  +++
Sbjct: 283 TCQVCFKRGHTAADCWYRFDEDYVADEKLVAAATNSYGIDTN--WYIDTGATDHITGELE 340

Query: 426 NLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLFFHQF 605
            L    +Y+G + +   +G  +  +HIG+ +  + +R   LN V +VP+ K NL+   Q 
Sbjct: 341 KLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTPSRNIHLNNVLYVPQAKKNLISASQL 400

Query: 606 CKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLY-VLDGLG-DLNNQAKSFFSASIPI 779
             DN  F E H+ FF +KD+ TR +LL+G   +GLY +    G   N QA      S+  
Sbjct: 401 AADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPIPKSFGRSTNKQALGAAKLSLSR 460

Query: 780 WHQRLGHPMLSTVSKIVNKFSLP--FLNKNFGFCHSCHISKSKRLPF 914
           WH RLGHP L  V +++++ +LP    + N   C++C  +KS +LP+
Sbjct: 461 WHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPY 507


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  146 bits (369), Expect = 2e-32
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 4/227 (1%)
 Frame = +3

Query: 246 SCQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADVK 425
           +CQ+  KR HTA  CW+R+D+  V   K   A     G  +   W  D+GAT H+  +++
Sbjct: 283 TCQVCFKRGHTAADCWYRFDEDYVADEKLVAAATNSYGIDTN--WYIDTGATDHITGELE 340

Query: 426 NLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLFFHQF 605
            L    +Y+G + +   +G  +  +HIG+ +  + +R   LN V +VP+ K NL+   Q 
Sbjct: 341 KLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTPSRNIHLNNVLYVPQAKKNLISASQL 400

Query: 606 CKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLY-VLDGLG-DLNNQAKSFFSASIPI 779
             DN  F E H+ FF +KD+ TR +LL+G   +GLY +    G   N QA      S+  
Sbjct: 401 AADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPIPKSFGRSTNKQALGAAKLSLSR 460

Query: 780 WHQRLGHPMLSTVSKIVNKFSLP--FLNKNFGFCHSCHISKSKRLPF 914
           WH RLGHP L  V +++++ +LP    + N   C++C  +KS +LP+
Sbjct: 461 WHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPY 507


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score =  146 bits (368), Expect = 2e-32
 Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 5/227 (2%)
 Frame = +3

Query: 249 CQIYRKRNHTADRCWFRYDQQKVPQHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADVKN 428
           CQ+  KR HT   CW+RYD+  VP  +     +++  D++   W  D+GAT H+  ++  
Sbjct: 279 CQLCYKRGHTVCDCWYRYDENFVPDERFAGTAVSYGVDTN---WYLDTGATDHVTGELDK 335

Query: 429 LCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLFFHQFC 608
           L +  +Y G D V   +G  ++ +HIGN+V  + +R   L  V +VPK   NL+  ++  
Sbjct: 336 LTVRDKYHGNDQVHTASGAGMEISHIGNSVVKTPSRNLHLKDVLYVPKANKNLVSAYKLT 395

Query: 609 KDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGLGDLNNQAKSFFSASIPI--- 779
            DN  F E +  FF +KD   R  LL+G    GLY L      ++Q K  +  + P    
Sbjct: 396 SDNLAFIELYRKFFFIKDLAMRRTLLRGRCHKGLYALPSPSSHHHQVKQVYGVTKPSFER 455

Query: 780 WHQRLGHPMLSTVSKIVNKFSLPFL--NKNFGFCHSCHISKSKRLPF 914
           WH RLGHP  + V K++   +LP L  ++    C +C  +KS +L F
Sbjct: 456 WHSRLGHPSYTVVEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSF 502


>ref|XP_008382851.1| PREDICTED: uncharacterized protein LOC103445612 [Malus domestica]
          Length = 573

 Score =  145 bits (367), Expect = 3e-32
 Identities = 88/244 (36%), Positives = 124/244 (50%), Gaps = 13/244 (5%)
 Frame = +3

Query: 222  RSPSNGEV--SCQIYRKRNHTADRCWFRYDQQ---KVPQHKPPTAYLAFPGDSSGAQWVT 386
            RS SN  V  +CQIY   +H A  C+ R +     KVP  K    Y  +        W+ 
Sbjct: 308  RSSSNPGVRNNCQIYGSSSHEAINCYDRMNPDIFGKVPSTKLAAMYTHY-ASKPYPSWIL 366

Query: 387  DSGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTLQTAHIGNAVFTSNNRKFCLNYVYHV 566
            DSGAT H+  D+ N+  P  Y G D V +G+G  L   H G+ +  + +  F LN V HV
Sbjct: 367  DSGATXHITHDISNISSPTSYTGEDKVYIGDGKGLSIHHTGSTLLNTAHASFKLNNVLHV 426

Query: 567  PKIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTTRALLLKGMNENGLYVLDGL------ 728
            P++K NLLF +QF KDN+     H++  VVKD+ T  + L+G   NG Y L G+      
Sbjct: 427  PQMKHNLLFAYQFLKDNYCSLTLHSNDSVVKDRYTGKMFLQGPVNNGFYTLQGIPASFSP 486

Query: 729  GDLNNQAKSFFSASIPIWHQRLGHPMLSTVSKIV--NKFSLPFLNKNFGFCHSCHISKSK 902
               +  A     A + IWH RLGHP  +   +++  NK +L   +    FC  C I+K+ 
Sbjct: 487  SCSSPHALVGTKALVNIWHSRLGHPSSAIFRRVLSANKLALQGKHSVDFFCSDCAIAKNH 546

Query: 903  RLPF 914
            +LPF
Sbjct: 547  KLPF 550


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  145 bits (367), Expect = 3e-32
 Identities = 101/332 (30%), Positives = 153/332 (46%), Gaps = 35/332 (10%)
 Frame = +3

Query: 21   MDIQTYTSHLLSFEMRVDQQLAQIQAPVANFVASSSTATTKNEXXXXXXXXXXXXXXXXX 200
            + ++   S LL+FE R++QQ + I+   AN+ +SS+      +                 
Sbjct: 205  ISLEAIHSMLLAFEHRLEQQ-SSIEQMSANYASSSNNRGGGRKFNGGRGQGYSPNNNNYT 263

Query: 201  XXXMPH----------NRSPSNGEVSCQIYRKRNHTADRCWFRYD------QQKVP---- 320
                            N SPS  +  CQ+  K  HTA  C+ R+D      Q  +     
Sbjct: 264  YRGRGRGGRNGQGGRQNSSPSE-KPQCQLCGKFGHTAQICYHRFDISFQGGQTTISHSLN 322

Query: 321  ---QHKPPTAYLAFPGDSSGAQWVTDSGATHHLNADVKNLCIPHEYDGTDTVKVGNGNTL 491
               Q+  P    +   + +   W  DSGA+HHL  ++ NL     Y GTD V +GNG  L
Sbjct: 323  NGNQNNIPAMVASASNNPADESWYLDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNGKHL 382

Query: 492  QTAHIGNAVFTSNNRKFCLNYVYHVPKIKSNLLFFHQFCKDNHVFFEFHTDFFVVKDKTT 671
              ++IG+    S+   F L  V+HVP I +NL+   +FC +N+   EFH++ F VKD  T
Sbjct: 383  SISNIGSKQLHSHTHSFRLKKVFHVPFISANLISVAKFCSENNALIEFHSNAFFVKDLHT 442

Query: 672  RALLLKGMNENGLYVLDGLGDLN-----NQAKSF---FSASI----PIWHQRLGHPMLST 815
            + +L +G  ENGLY      +L      N A +F   FS+++     +WH RLGH     
Sbjct: 443  KMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHASFDI 502

Query: 816  VSKIVNKFSLPFLNKNFGFCHSCHISKSKRLP 911
            VSK++N  ++         C  C ++KS RLP
Sbjct: 503  VSKVMNTCNVASGKYKSFVCSDCQLAKSHRLP 534