BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00046821
         (1134 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   346   2e-92
emb|CDP17738.1| unnamed protein product [Coffea canephora]            336   2e-89
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   278   6e-72
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   269   4e-69
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   266   2e-68
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   262   4e-67
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   262   4e-67
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   261   6e-67
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     261   1e-66
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           259   3e-66
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        259   4e-66
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   258   5e-66
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               255   5e-65
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                255   5e-65
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     254   9e-65
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   254   9e-65
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   251   1e-63
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   251   1e-63
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   250   2e-63
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   250   2e-63

>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  346 bits (887), Expect = 2e-92
 Identities = 176/376 (46%), Positives = 234/376 (62%), Gaps = 5/376 (1%)
 Frame = -3

Query: 1114 VTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSITRLRKDE 935
            V + L S E RK D+    S  + + L+ RGR                   +     KDE
Sbjct: 115  VCSALYSHELRKQDKMRTKSTTSEEALVIRGRQQSQTKERRGMSKSKGRVVA-----KDE 169

Query: 934  FSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEESDDACDFSLTVTPSACTITDSTW 755
             ++CH+ GHW KDC K +  E    +  V   K + ESD     SL V+ SA +  D  W
Sbjct: 170  CAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESD----ISLIVSLSASSYPDE-W 224

Query: 754  VLDTGATYHICPYWDWFSSFEEIDGEV-RMGNNHTCRVIGIGSSRINMHDGMVRELKEVR 578
            +LD+G TYH+CP  DWF  F+E+DG V  MGN++ C+ +GIGS ++  HDG  R L++VR
Sbjct: 225  ILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVR 284

Query: 577  FVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHHKLYYLIGSKTTGD-- 404
            +VP +KKNLISLG L++KG  +   +G+LK   G+LV++K    + LYY  GS   G   
Sbjct: 285  YVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYYQGSTVVGTVA 344

Query: 403  --EHTESADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEYCVKGKKTRTS 230
                +   D E  KLWHMRL H GEKSL  L +Q  LKG  ACKL FCE+CV GK+ R  
Sbjct: 345  AATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVK 404

Query: 229  FGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTISHKDEVLEIF 50
            FGT I+NT G+LDYVHSDVWGP+K  S+GG+H+FV+F+DD+SRRVWV+T+ +K++VLEIF
Sbjct: 405  FGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIF 464

Query: 49   VRWKKATETQTGRKIK 2
            ++WK   E  TGRKIK
Sbjct: 465  LKWKAEVENHTGRKIK 480


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  336 bits (862), Expect = 2e-89
 Identities = 176/377 (46%), Positives = 239/377 (63%), Gaps = 6/377 (1%)
 Frame = -3

Query: 1114 VTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSITRLRKDE 935
            V + L S E RK D++     A ++ L+ARGR                   SI+R+ KDE
Sbjct: 202  VCSALYSRELRKQDKKKKKVAAADEALVARGRQQSQSKGRRGWSK------SISRVAKDE 255

Query: 934  FSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEESDDACDFSLTVTPSACTITDSTW 755
             ++C + GHW KDC K K  +   +  +VN+ +   +SD   DFSL V  S  T     W
Sbjct: 256  CAFCREKGHWKKDCPKLK--KKGKAPQDVNVAEC--KSDAESDFSLAV--SRLTSHPDEW 309

Query: 754  VLDTGATYHICPYWDWFSSFEEIDGE-VRMGNNHTCRVIGIGSSRINMHDGMVRELKEVR 578
            +LD+  TYH+ P  +WF  FEE+DG  V MGN++ C+ +GIGS ++  HDG  R LK+VR
Sbjct: 310  ILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGSTRILKDVR 369

Query: 577  FVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHHKLYYLIGSKTTGD-- 404
            +VP +K++LISLG L++KG ++   +G+LKV  G+L+++K  R + LYY  GS   G   
Sbjct: 370  YVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTAA 429

Query: 403  ---EHTESADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEYCVKGKKTRT 233
                 +   D E TKLWHMRL   GEKSL  L +Q  LKG   CKL FCE+CV  K+ + 
Sbjct: 430  VATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKV 489

Query: 232  SFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTISHKDEVLEI 53
             FGT I+NT G+LDYVHSDVWGP+K  SLGG+++FV+FIDD+SRRVWV+T+  KDE+L+I
Sbjct: 490  KFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKI 549

Query: 52   FVRWKKATETQTGRKIK 2
            F++WK   E QTGRKIK
Sbjct: 550  FLKWKARVENQTGRKIK 566


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  278 bits (711), Expect = 6e-72
 Identities = 148/329 (44%), Positives = 193/329 (58%), Gaps = 5/329 (1%)
 Frame = -3

Query: 1114 VTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSITRLRKDE 935
            V + L S E RK D+    S  + + L+ARGR                   +     KDE
Sbjct: 116  VCSALYSHELRKQDKMKTKSTTSEEALVARGRQQSQTKERRGMSKSKGRAVA-----KDE 170

Query: 934  FSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEESDDACDFSLTVTPSACTITDSTW 755
             ++CH+ GHW KDC K +  E    +  V   K + ESD     SL V+ SA    D  W
Sbjct: 171  CAFCHEKGHWKKDCPKLQKKEKVLQDANVAECKSDVESD----ISLIVSLSASLYLDE-W 225

Query: 754  VLDTGATYHICPYWDWFSSFEEIDGEV-RMGNNHTCRVIGIGSSRINMHDGMVRELKEVR 578
            +LD+G TYH+CP  DWF  F+E+DG V  MGN++ C+ +GIGS ++  HDG  R L++VR
Sbjct: 226  ILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVR 285

Query: 577  FVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHHKLYYLIGSKTTGD-- 404
            +VP +KKNLISLG L++KG  +   +G+LK   G+LV++K    + LYY  GS   G   
Sbjct: 286  YVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVA 345

Query: 403  --EHTESADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEYCVKGKKTRTS 230
                +   D E TKLWHMRL H GEKSL    +Q  LKG  ACKL FCE+CV GK+ R  
Sbjct: 346  AATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVK 405

Query: 229  FGTTIYNTSGVLDYVHSDVWGPSKNASLG 143
            FGT I+NT G+LDYVHSDVWGP+K  S+G
Sbjct: 406  FGTAIHNTKGILDYVHSDVWGPAKTPSIG 434


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  269 bits (687), Expect = 4e-69
 Identities = 138/317 (43%), Positives = 186/317 (58%), Gaps = 4/317 (1%)
 Frame = -3

Query: 940  DEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEESDDACDFSLTVTPSACTITDS 761
            D  ++C + GHW  DC K+K     +    V+     E+++   D +L       T    
Sbjct: 223  DVCNYCKEKGHWKFDCPKKKK---QSEKQSVSAAVAEEDTNSEEDIALVADEH--THHSD 277

Query: 760  TWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGSSRINMHDGMVRELKE 584
             WVLD+GA+YHICP  +WF+++E++DG  + M N+  C+V+G GS +I  HDG    L E
Sbjct: 278  VWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNE 337

Query: 583  VRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHHKLYYLIGSKTTGD 404
            VR VP + KNLISL  L +KG+    ++GVL+V  GS +I+K      LY+L GS  TG 
Sbjct: 338  VRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGS 397

Query: 403  EHTESAD---TEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEYCVKGKKTRT 233
             H  S++    + TKLWH+RL H GE+ +  L ++D L G     L FCE+CV GK  R 
Sbjct: 398  AHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRN 457

Query: 232  SFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTISHKDEVLEI 53
             F   I+ T G LDY+HSD WGP +  SLGG  +FVS IDDYSR  WVY + HK E  + 
Sbjct: 458  KFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQK 517

Query: 52   FVRWKKATETQTGRKIK 2
            F  WK   E QTG+KIK
Sbjct: 518  FKEWKILMENQTGKKIK 534


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  266 bits (680), Expect = 2e-68
 Identities = 148/388 (38%), Positives = 209/388 (53%), Gaps = 12/388 (3%)
 Frame = -3

Query: 1129 MTYAEVTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXR--SI 956
            +T  EV   L ++E  K       S +  + L+ RGR  +               R  S 
Sbjct: 111  LTLQEVYDALHAKEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNKSRDKSSSGYRGRSK 170

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACDFS 800
            +R R     +C   GH   DC K +  E    N +    KG +E        +D+  D  
Sbjct: 171  SRGRYKSCKYCKRGGHDISDCWKLQNKEKHKGNYKP---KGKQEEQGKAAVATDNKPDAE 227

Query: 799  LTVTPSACTITDSTWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGSSR 623
            L V  + C  T   W+LDTG TYH+CP  DWF+++E + G  V MG+N  C+V G+G+ +
Sbjct: 228  LLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQ 287

Query: 622  INMHDGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT-RH 446
            I M DG +R L +VR +P++K+NLISL TL  KGY+    +G+LKV  GSLV+MK   ++
Sbjct: 288  IKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKN 347

Query: 445  HKLYYLIGSKTTGDEHTESADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFC 266
              LY+L G+   G+    +     + LWHMRL H  E  L  L ++  L G    KL FC
Sbjct: 348  ADLYHLQGTTIVGNVAAVTDSLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFC 407

Query: 265  EYCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVY 86
            E+C+ GK  R  F T+ + T G+LDYVHSD+WGP++  S GG  + ++ +DDYSR+VW Y
Sbjct: 408  EHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKVWPY 467

Query: 85   TISHKDEVLEIFVRWKKATETQTGRKIK 2
             + HK E   +F  WK   E QT RK+K
Sbjct: 468  FLKHKFEAFLVFKEWKTMVERQTERKVK 495


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  262 bits (669), Expect = 4e-67
 Identities = 149/386 (38%), Positives = 213/386 (55%), Gaps = 9/386 (2%)
 Frame = -3

Query: 1132 KMTYAEVTTTLRSEEFRK-MDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSI 956
            ++T  EV   L+++E  K M + D +S +  + L  RGR T+               +S 
Sbjct: 166  ELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGR-TENRTSNEKNYDRRGRSKSK 224

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNT-EVNIFKGNEESDDACDFSLTVTPSA 779
                K    +C    H   +C K +A E  N    +V++       DD+ D    V  + 
Sbjct: 225  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGD--CLVVFAG 282

Query: 778  CTITDSTWVLDTGATYHICPYWDWFSSFEEID--GEVRMGNNHTCRVIGIGSSRINMHDG 605
            C      W+LD+  ++HIC   +WFSS++ +     VRMG+++ C ++GIGS +I   DG
Sbjct: 283  CVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342

Query: 604  MVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHH-KLYYL 428
            M R LK VR++P + +NLISL TL A+GYK    +GVLKV  GSLV +K   +  KLY L
Sbjct: 343  MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVL 402

Query: 427  IGSKTTGDEHTESADTE----KTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEY 260
             G   TG +   +A T     KT LWHMRL H     +  L++++ LKG  + K+ FCE+
Sbjct: 403  RGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEH 462

Query: 259  CVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTI 80
            C+ GK  R  F T+++ T G LDYVH+D+WGPSK  SLGG  + ++ IDDYSR+VW Y +
Sbjct: 463  CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFL 522

Query: 79   SHKDEVLEIFVRWKKATETQTGRKIK 2
             HKD+    F  WK   E QT RK+K
Sbjct: 523  KHKDDTFTAFKNWKVMIERQTERKVK 548


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  262 bits (669), Expect = 4e-67
 Identities = 149/386 (38%), Positives = 212/386 (54%), Gaps = 9/386 (2%)
 Frame = -3

Query: 1132 KMTYAEVTTTLRSEEFRK-MDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSI 956
            ++T  EV   L+++E  K M + D +S +  + L  RGR T+               +S 
Sbjct: 166  ELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGR-TENRTSNEKNYDRRGRSKSK 224

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNT-EVNIFKGNEESDDACDFSLTVTPSA 779
                K    +C    H   +C K +A E  N    +V++       DD+ D    V  + 
Sbjct: 225  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGD--CLVVFAG 282

Query: 778  CTITDSTWVLDTGATYHICPYWDWFSSFEEID--GEVRMGNNHTCRVIGIGSSRINMHDG 605
            C      W+LD+  ++HIC   +WFSS++ +     VRMG+++ C ++GIGS +I   DG
Sbjct: 283  CVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342

Query: 604  MVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKV-TRHHKLYYL 428
            M R LK VR++P + +NLISL TL A+GYK    +GVLKV  GSLV +K      KLY L
Sbjct: 343  MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVL 402

Query: 427  IGSKTTGDEHTESADTE----KTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEY 260
             G   TG +   +A T     KT LWHMRL H     +  L++++ LKG  + K+ FCE+
Sbjct: 403  RGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEH 462

Query: 259  CVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTI 80
            C+ GK  R  F T+++ T G LDYVH+D+WGPSK  SLGG  + ++ IDDYSR+VW Y +
Sbjct: 463  CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFL 522

Query: 79   SHKDEVLEIFVRWKKATETQTGRKIK 2
             HKD+    F  WK   E QT RK+K
Sbjct: 523  KHKDDTFTAFKNWKVMIERQTERKVK 548


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  261 bits (668), Expect = 6e-67
 Identities = 149/386 (38%), Positives = 213/386 (55%), Gaps = 9/386 (2%)
 Frame = -3

Query: 1132 KMTYAEVTTTLRSEEFRK-MDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSI 956
            ++T  EV   L+++E  K M + D +S +  + L  RGR T+               +S 
Sbjct: 166  ELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGR-TENRTSNEKNYDRRGRSKSK 224

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNT-EVNIFKGNEESDDACDFSLTVTPSA 779
                K    +C    H   +C K +A E  N    +V++       DD+ D    V  + 
Sbjct: 225  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGD--CLVVFAG 282

Query: 778  CTITDSTWVLDTGATYHICPYWDWFSSFEEID--GEVRMGNNHTCRVIGIGSSRINMHDG 605
            C      W+LD+  ++HIC   +WFSS++ +     VRMG+++ C ++GIGS +I   DG
Sbjct: 283  CVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 342

Query: 604  MVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHH-KLYYL 428
            M R LK VR++P + +NLISL TL A+GYK    +GVLKV  GSLV +K   +  KLY L
Sbjct: 343  MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVL 402

Query: 427  IGSKTTGDEHTESADTE----KTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEY 260
             G   TG +   +A T     KT LWHMRL H     +  L++++ LKG  + K+ FCE+
Sbjct: 403  RGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEH 462

Query: 259  CVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTI 80
            C+ GK  R  F T+++ T G LDYVH+D+WGPSK  SLGG  + ++ IDDYSR+VW Y +
Sbjct: 463  CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFL 522

Query: 79   SHKDEVLEIFVRWKKATETQTGRKIK 2
             HKD+    F  WK   E QT RK+K
Sbjct: 523  KHKDDTFTAFKNWKVMIERQTERKVK 548


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  261 bits (666), Expect = 1e-66
 Identities = 147/391 (37%), Positives = 212/391 (54%), Gaps = 15/391 (3%)
 Frame = -3

Query: 1129 MTYAEVTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXR--SI 956
            +T  EV   L ++E  K       S +  + L+ RGR  +               R  S 
Sbjct: 78   LTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSK 137

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACDFS 800
            +R R     +C   GH   +C K   ++  +  T   I KG +E        +D+  D  
Sbjct: 138  SRGRYKSCKYCKRDGHDISECWK---LQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAE 194

Query: 799  LTVTPSACTITDSTWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGSSR 623
            L V  + C  T   W+LDT  TYH+CP  DWF+++E + G  V MG++  C V GIG+ +
Sbjct: 195  LLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQ 254

Query: 622  INMHDGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT-RH 446
            I M DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK   ++
Sbjct: 255  IKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKY 314

Query: 445  HKLYYLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKL 275
              LY+L G+   G+    S   ++++ T LWHMRL H  E  L  L ++  L G    KL
Sbjct: 315  ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKL 374

Query: 274  AFCEYCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRV 95
             FCE+C+ GK  R  F T+ + T G+LDYVHSD+WGP++  S GG  + ++ +DDYSR+V
Sbjct: 375  KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKV 434

Query: 94   WVYTISHKDEVLEIFVRWKKATETQTGRKIK 2
            W Y + HK +  ++F  WK   E QT RK+K
Sbjct: 435  WPYFLKHKYQAFDVFKEWKTMVERQTERKVK 465


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  259 bits (662), Expect = 3e-66
 Identities = 148/386 (38%), Positives = 212/386 (54%), Gaps = 9/386 (2%)
 Frame = -3

Query: 1132 KMTYAEVTTTLRSEEFRK-MDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSI 956
            ++T  EV   L+++E  K M + D +S +  + L  RGR T+               +S 
Sbjct: 168  ELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGR-TENKTSNEKNYDRRGRSKSK 226

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNT-EVNIFKGNEESDDACDFSLTVTPSA 779
                K    +C    H   +C K +A E  N    +V++       DD+ D    V  + 
Sbjct: 227  PPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDDSGD--CLVVFAG 284

Query: 778  CTITDSTWVLDTGATYHICPYWDWFSSFEEID--GEVRMGNNHTCRVIGIGSSRINMHDG 605
            C      W+LD+  ++HIC   +WFSS++ +     VRMG+++ C ++GIGS +I   DG
Sbjct: 285  CVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDG 344

Query: 604  MVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHH-KLYYL 428
            M R LK VR++P + +NLISL TL A+GYK    +GVLKV  GSLV +K   +  KLY L
Sbjct: 345  MTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVL 404

Query: 427  IGSKTTGDEHTESADTE----KTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEY 260
             G    G +   +A T     KT LWHMRL H     +  L++++ LKG  + K+ FCE+
Sbjct: 405  RGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEH 464

Query: 259  CVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTI 80
            C+ GK  R  F T+++ T G LDYVH+D+WGPSK  SLGG  + ++ IDDYSR+VW Y +
Sbjct: 465  CIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFL 524

Query: 79   SHKDEVLEIFVRWKKATETQTGRKIK 2
             HKD+    F  WK   E QT RK+K
Sbjct: 525  KHKDDTFTAFKNWKVMIERQTERKVK 550


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  259 bits (661), Expect = 4e-66
 Identities = 147/391 (37%), Positives = 211/391 (53%), Gaps = 15/391 (3%)
 Frame = -3

Query: 1129 MTYAEVTTTLRSEEFRKMDREDLASEANNDLLLARG--RSTDXXXXXXXXXXXXXXXRSI 956
            +T  EV   L ++E  K       S +  + L+ RG  +  +               RS 
Sbjct: 169  LTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSK 228

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACDFS 800
            +R R     +C   GH    C K   ++  +  T   I KG +E        +D+  D  
Sbjct: 229  SRGRYKSCKYCKRDGHDISKCWK---LQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAE 285

Query: 799  LTVTPSACTITDSTWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGSSR 623
            L V  + C  T   W+LDT  TYH+CP  DWF+++E + G  V MG++  C V GIG+ +
Sbjct: 286  LLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQ 345

Query: 622  INMHDGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT-RH 446
            I M DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK + + 
Sbjct: 346  IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKS 405

Query: 445  HKLYYLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKL 275
              LY+L G+   G+  T S   ++++ T LWHMRL H  E  L  L ++  L G    KL
Sbjct: 406  ANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKL 465

Query: 274  AFCEYCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRV 95
             FCE+C+ GK  R  F T+ + T G+LDYVHSD+WGP++  S GG  + ++ +DDYSR+V
Sbjct: 466  KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKV 525

Query: 94   WVYTISHKDEVLEIFVRWKKATETQTGRKIK 2
            W Y + HK +   +F  WK   E QT RK+K
Sbjct: 526  WPYFLKHKYQAFNVFKEWKTMVERQTERKVK 556


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  258 bits (660), Expect = 5e-66
 Identities = 140/383 (36%), Positives = 206/383 (53%), Gaps = 6/383 (1%)
 Frame = -3

Query: 1132 KMTYAEVTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSIT 953
            ++T AEV   L++ E  K   +  AS +  + L  RGRS                     
Sbjct: 170  ELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDKSQSRGRSK 229

Query: 952  RLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEESDDACDFSLTVTPSACT 773
               K    +C    H+ ++C K +  E   S+ + ++    E SD        V  + C 
Sbjct: 230  SRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSG---DCLVVFAGCV 286

Query: 772  ITDSTWVLDTGATYHICPYWDWFSSFEEIDGE--VRMGNNHTCRVIGIGSSRINMHDGMV 599
             +   W+LDT  ++HIC   DWFSS++ +     VRMG+++   ++GIGS +I  HDGM 
Sbjct: 287  ASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMT 346

Query: 598  RELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHHKLYYLIGS 419
            R LK+VR +P + +NLISL TL A+GYK  +  GV+KV  GSLV M    +    Y++  
Sbjct: 347  RTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRG 406

Query: 418  KTTGDEHTESADTE----KTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEYCVK 251
             T     T +A ++    KT LWHMRL H  E  +  L++++ L G    K+ FCE+CV 
Sbjct: 407  STLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVF 466

Query: 250  GKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTISHK 71
            GK  R  F T+++ T G+LDYVH+D+WGPS+ A LGG  + ++ IDDYSR+VW Y + HK
Sbjct: 467  GKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHK 526

Query: 70   DEVLEIFVRWKKATETQTGRKIK 2
            D+    F  WK   E QT +++K
Sbjct: 527  DDTFAAFKEWKVRIERQTEKEVK 549


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  255 bits (651), Expect = 5e-65
 Identities = 135/333 (40%), Positives = 190/333 (57%), Gaps = 13/333 (3%)
 Frame = -3

Query: 961  SITRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACD 806
            S +R R     +C   GH    C K   ++  +  T   I KG +E        +D+  D
Sbjct: 44   SKSRGRYKSCKYCKRDGHDISKCWK---LQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSD 100

Query: 805  FSLTVTPSACTITDSTWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGS 629
              L V  + C  T   W+LDT  TYH+CP  DWF+++E + G  V MG++  C V GIG+
Sbjct: 101  AELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGT 160

Query: 628  SRINMHDGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT- 452
             +I M DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK   
Sbjct: 161  VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADI 220

Query: 451  RHHKLYYLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIAC 281
            +   LY+L G+   G+  T S   ++++ T LWHMRL H  E  L  L  +  L G    
Sbjct: 221  KSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIG 280

Query: 280  KLAFCEYCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSR 101
            KL FCE+C+ GK  R  F T+ + T G+LDYVHSD+WGP++  S GG  + ++ ++DYSR
Sbjct: 281  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSR 340

Query: 100  RVWVYTISHKDEVLEIFVRWKKATETQTGRKIK 2
            +VW Y + HK +   +F  WK   E QT RK+K
Sbjct: 341  KVWPYFLKHKYQAFNVFKEWKTMVERQTERKVK 373


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  255 bits (651), Expect = 5e-65
 Identities = 135/333 (40%), Positives = 190/333 (57%), Gaps = 13/333 (3%)
 Frame = -3

Query: 961  SITRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACD 806
            S +R R     +C   GH    C K   ++  +  T   I KG +E        +D+  D
Sbjct: 212  SKSRGRYKSCKYCKRDGHDISKCWK---LQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSD 268

Query: 805  FSLTVTPSACTITDSTWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGS 629
              L V  + C  T   W+LDT  TYH+CP  DWF+++E + G  V MG++  C V GIG+
Sbjct: 269  AELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGT 328

Query: 628  SRINMHDGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT- 452
             +I M DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK   
Sbjct: 329  VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADI 388

Query: 451  RHHKLYYLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIAC 281
            +   LY+L G+   G+  T S   ++++ T LWHMRL H  E  L  L  +  L G    
Sbjct: 389  KSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIG 448

Query: 280  KLAFCEYCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSR 101
            KL FCE+C+ GK  R  F T+ + T G+LDYVHSD+WGP++  S GG  + ++ ++DYSR
Sbjct: 449  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSR 508

Query: 100  RVWVYTISHKDEVLEIFVRWKKATETQTGRKIK 2
            +VW Y + HK +   +F  WK   E QT RK+K
Sbjct: 509  KVWPYFLKHKYQAFNVFKEWKTMVERQTERKVK 541


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  254 bits (649), Expect = 9e-65
 Identities = 145/387 (37%), Positives = 209/387 (54%), Gaps = 15/387 (3%)
 Frame = -3

Query: 1117 EVTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXR--SITRLR 944
            EV   L ++E  K       S +  + L+ RGR  +               R  S +R R
Sbjct: 208  EVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGR 267

Query: 943  KDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACDFSLTVT 788
                 +C   GH   +C K   ++  +  T   I KG +E        +D+  D  L V 
Sbjct: 268  YKSCKYCKRDGHDISECWK---LQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVA 324

Query: 787  PSACTITDSTWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGSSRINMH 611
             + C  T   W+LDT  TYH+CP  DWF+++E + G  V MG++  C V GIG+ +I M 
Sbjct: 325  YAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384

Query: 610  DGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT-RHHKLY 434
            DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK   +   LY
Sbjct: 385  DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444

Query: 433  YLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCE 263
            +L G+   G+    S   ++++ T LWHMRL H  E  L  L +++ L G    KL FCE
Sbjct: 445  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCE 504

Query: 262  YCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYT 83
            +C+ GK  R  F T+ + T G+LDYVHSD+WGP+   S GG  + ++ +DDYSR+VW Y 
Sbjct: 505  HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYF 564

Query: 82   ISHKDEVLEIFVRWKKATETQTGRKIK 2
            + HK +  ++F  WK   E QT +K+K
Sbjct: 565  LKHKYQAFDVFKEWKTMVERQTEKKVK 591


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  254 bits (649), Expect = 9e-65
 Identities = 145/387 (37%), Positives = 209/387 (54%), Gaps = 15/387 (3%)
 Frame = -3

Query: 1117 EVTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXR--SITRLR 944
            EV   L ++E  K       S +  + L+ RGR  +               R  S +R R
Sbjct: 208  EVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGR 267

Query: 943  KDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACDFSLTVT 788
                 +C   GH   +C K   ++  +  T   I KG +E        +D+  D  L V 
Sbjct: 268  YKSCKYCKRDGHDISECWK---LQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVA 324

Query: 787  PSACTITDSTWVLDTGATYHICPYWDWFSSFEEIDG-EVRMGNNHTCRVIGIGSSRINMH 611
             + C  T   W+LDT  TYH+CP  DWF+++E + G  V MG++  C V GIG+ +I M 
Sbjct: 325  YAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMF 384

Query: 610  DGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT-RHHKLY 434
            DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK   +   LY
Sbjct: 385  DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444

Query: 433  YLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCE 263
            +L G+   G+    S   ++++ T LWHMRL H  E  L  L +++ L G    KL FCE
Sbjct: 445  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCE 504

Query: 262  YCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYT 83
            +C+ GK  R  F T+ + T G+LDYVHSD+WGP+   S GG  + ++ +DDYSR+VW Y 
Sbjct: 505  HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYF 564

Query: 82   ISHKDEVLEIFVRWKKATETQTGRKIK 2
            + HK +  ++F  WK   E QT +K+K
Sbjct: 565  LKHKYQAFDVFKEWKTMVERQTEKKVK 591


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  251 bits (640), Expect = 1e-63
 Identities = 144/391 (36%), Positives = 210/391 (53%), Gaps = 15/391 (3%)
 Frame = -3

Query: 1129 MTYAEVTTTLR-SEEFRKM-DREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSI 956
            +T  EV   L   E+ +KM   E   S+A   ++  R +  +               RS 
Sbjct: 376  LTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSK 435

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACDFS 800
            +R R     +C   GH   +C K   +   +  T   + KG +E        +D+  D  
Sbjct: 436  SRGRYKSCKYCKRDGHDIFECWK---LHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAE 492

Query: 799  LTVTPSACTITDSTWVLDTGATYHICPYWDWFSSFEEID-GEVRMGNNHTCRVIGIGSSR 623
            L V  + C  T   W+L+T   YH+CP  DWF+++E +  G V MG++  C V GIG+ +
Sbjct: 493  LLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQ 552

Query: 622  INMHDGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT-RH 446
            I M DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK   + 
Sbjct: 553  IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 612

Query: 445  HKLYYLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKL 275
              LY+L G+   G+    S   ++++ T LWHMRL H  E  L  L ++  L G    KL
Sbjct: 613  ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKL 672

Query: 274  AFCEYCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRV 95
             FCE+C+ GK  R  F T+ + T G+LDYVHSD+WGP++  S GG  + ++ +DDYSR+V
Sbjct: 673  KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKV 732

Query: 94   WVYTISHKDEVLEIFVRWKKATETQTGRKIK 2
            W Y + HK +  ++F  WK   E QT RK+K
Sbjct: 733  WPYFLKHKYQAFDVFKEWKTMVERQTERKVK 763


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  251 bits (640), Expect = 1e-63
 Identities = 144/391 (36%), Positives = 210/391 (53%), Gaps = 15/391 (3%)
 Frame = -3

Query: 1129 MTYAEVTTTLR-SEEFRKM-DREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSI 956
            +T  EV   L   E+ +KM   E   S+A   ++  R +  +               RS 
Sbjct: 169  LTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSK 228

Query: 955  TRLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEE--------SDDACDFS 800
            +R R     +C   GH   +C K   +   +  T   + KG +E        +D+  D  
Sbjct: 229  SRGRYKSCKYCKRDGHDIFECWK---LHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAE 285

Query: 799  LTVTPSACTITDSTWVLDTGATYHICPYWDWFSSFEEID-GEVRMGNNHTCRVIGIGSSR 623
            L V  + C  T   W+L+T   YH+CP  DWF+++E +  G V MG++  C V GIG+ +
Sbjct: 286  LLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQ 345

Query: 622  INMHDGMVRELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVT-RH 446
            I M DG +R L +VR +P +K++LISL TL  KGYK    +G+LKV  GSLV+MK   + 
Sbjct: 346  IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 405

Query: 445  HKLYYLIGSKTTGDEHTES---ADTEKTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKL 275
              LY+L G+   G+    S   ++++ T LWHMRL H  E  L  L ++  L G    KL
Sbjct: 406  ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKL 465

Query: 274  AFCEYCVKGKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRV 95
             FCE+C+ GK  R  F T+ + T G+LDYVHSD+WGP++  S GG  + ++ +DDYSR+V
Sbjct: 466  KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKV 525

Query: 94   WVYTISHKDEVLEIFVRWKKATETQTGRKIK 2
            W Y + HK +  ++F  WK   E QT RK+K
Sbjct: 526  WPYFLKHKYQAFDVFKEWKTMVERQTERKVK 556


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  250 bits (638), Expect = 2e-63
 Identities = 138/383 (36%), Positives = 202/383 (52%), Gaps = 6/383 (1%)
 Frame = -3

Query: 1132 KMTYAEVTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSIT 953
            ++T AEV   L++ E  K   +  AS +  + L  +GRS                     
Sbjct: 170  ELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVKGRSEQRTYNDSNDRDKSKSRGRSK 229

Query: 952  RLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEESDDACDFSLTVTPSACT 773
               K    +C    H+ K+C K +  E   S+ + ++    + SD        V  + C 
Sbjct: 230  SRGKKFCKYCKKKIHFIKECWKLQNKEKRKSDGKASVVTSAKNSDSG---DCLVVFAGCV 286

Query: 772  ITDSTWVLDTGATYHICPYWDWFSSFEEIDGE--VRMGNNHTCRVIGIGSSRINMHDGMV 599
             +   W+LDT  ++HI    DWFSS++ +     VRMGN++   ++GIGS +I  HDG+ 
Sbjct: 287  ASHDEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGIT 346

Query: 598  RELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHHKLYYLIGS 419
            R LK+VR +P + +NLISL TL A+GYK     GV+KV  GSLV M    +    Y++  
Sbjct: 347  RTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRG 406

Query: 418  KTTGDEHTESADTE----KTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEYCVK 251
             T     T +A T+    KT LWHMRL H  E  +  L++++ L G     + FCE CV 
Sbjct: 407  STLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVF 466

Query: 250  GKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTISHK 71
            GK  R  F T+++ T G+LDYVH+D+WGPS+  SLGG  + ++ IDDYSR+VW Y + HK
Sbjct: 467  GKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHK 526

Query: 70   DEVLEIFVRWKKATETQTGRKIK 2
            D+    F  WK   E QT +++K
Sbjct: 527  DDTFAAFKEWKVMIERQTEKEVK 549


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  250 bits (638), Expect = 2e-63
 Identities = 138/383 (36%), Positives = 202/383 (52%), Gaps = 6/383 (1%)
 Frame = -3

Query: 1132 KMTYAEVTTTLRSEEFRKMDREDLASEANNDLLLARGRSTDXXXXXXXXXXXXXXXRSIT 953
            ++T AEV   L++ E  K   +  AS +  + L  RGRS                     
Sbjct: 170  ELTLAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSK 229

Query: 952  RLRKDEFSWCHDFGHWAKDCTKRKAVEGDNSNTEVNIFKGNEESDDACDFSLTVTPSACT 773
               K    +C    H+ ++C K +  E   S+ + ++    E SD        V  +   
Sbjct: 230  SRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSG---DCLVVFAGYV 286

Query: 772  ITDSTWVLDTGATYHICPYWDWFSSFEEIDGE--VRMGNNHTCRVIGIGSSRINMHDGMV 599
             +   W+LDT  ++HIC   DWFSS++ +  E  VRMG+++   ++GIGS +I  HDGM 
Sbjct: 287  ASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMT 346

Query: 598  RELKEVRFVPAIKKNLISLGTLKAKGYKIVAENGVLKVIYGSLVIMKVTRHHKLYYLIGS 419
            R LK+VR +P + +NLISL TL A+GYK     GV+KV  GSLV M    +    Y++  
Sbjct: 347  RTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRG 406

Query: 418  KTTGDEHTESADTE----KTKLWHMRLAHPGEKSLHRLIQQDFLKGVIACKLAFCEYCVK 251
             T     T +A T+    KT LWHMRL H  E  +  L++++ L G     + FCE+CV 
Sbjct: 407  STLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVF 466

Query: 250  GKKTRTSFGTTIYNTSGVLDYVHSDVWGPSKNASLGGKHWFVSFIDDYSRRVWVYTISHK 71
            GK  R  F T+++ T G+LDYVH+D+WGPS+  SLGG  + ++ IDDYSR+ W Y + HK
Sbjct: 467  GKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHK 526

Query: 70   DEVLEIFVRWKKATETQTGRKIK 2
            D+    F   K   E QT +++K
Sbjct: 527  DDTFAAFKERKVMIERQTEKEVK 549