BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00038622
         (746 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   166   2e-38
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   165   3e-38
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   164   4e-38
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   162   3e-37
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   149   1e-33
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              149   1e-33
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   149   2e-33
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   149   2e-33
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   149   2e-33
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   4e-33
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   4e-33
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   4e-33
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   148   4e-33
ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF,...   144   8e-32
gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Ambore...   144   8e-32
ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF,...   142   3e-31
gb|KHG01807.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   142   3e-31
gb|KDO48082.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   142   3e-31
gb|KDO48081.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   142   3e-31
gb|KDO48080.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   142   3e-31

>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Nelumbo nucifera]
          Length = 565

 Score =  166 bits (420), Expect = 2e-38
 Identities = 115/251 (45%), Positives = 145/251 (57%), Gaps = 9/251 (3%)
 Frame = +1

Query: 19  SVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQI 192
           SV +LHE               RHFPASVL QEQRD  R  L + RE+K  QA LDR ++
Sbjct: 26  SVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKL 85

Query: 193 DNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDE 369
           ++   L +EKK    D+Y + FERQLLY PGLWYL P   + E  + S+  QS  + T +
Sbjct: 86  EDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVK 145

Query: 370 ELHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSNLHNANELIPSFGMNDISPPEKE 534
            + V+  D L LAK+AVL SKQAASL  D     ++S+     +L P    N I P  +E
Sbjct: 146 NVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PLREE 204

Query: 535 NIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKT-SLIDLSDPLRLFLSGAEAR 711
             VRS RLLERQSK+R  P+   +  E S+ R +D H K     D +DPLRLFL G E +
Sbjct: 205 VAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETK 264

Query: 712 QLLTAKEEKEL 744
           QLLT KEE EL
Sbjct: 265 QLLTPKEESEL 275


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Nelumbo nucifera]
          Length = 568

 Score =  165 bits (417), Expect = 3e-38
 Identities = 114/252 (45%), Positives = 145/252 (57%), Gaps = 9/252 (3%)
 Frame = +1

Query: 16  LSVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQ 189
           + V +LHE               RHFPASVL QEQRD  R  L + RE+K  QA LDR +
Sbjct: 28  MPVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRK 87

Query: 190 IDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTD 366
           +++   L +EKK    D+Y + FERQLLY PGLWYL P   + E  + S+  QS  + T 
Sbjct: 88  LEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTV 147

Query: 367 EELHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSNLHNANELIPSFGMNDISPPEK 531
           + + V+  D L LAK+AVL SKQAASL  D     ++S+     +L P    N I P  +
Sbjct: 148 KNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PLRE 206

Query: 532 ENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKT-SLIDLSDPLRLFLSGAEA 708
           E  VRS RLLERQSK+R  P+   +  E S+ R +D H K     D +DPLRLFL G E 
Sbjct: 207 EVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPET 266

Query: 709 RQLLTAKEEKEL 744
           +QLLT KEE EL
Sbjct: 267 KQLLTPKEESEL 278


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X3 [Nelumbo nucifera]
          Length = 540

 Score =  164 bits (416), Expect = 4e-38
 Identities = 114/250 (45%), Positives = 144/250 (57%), Gaps = 9/250 (3%)
 Frame = +1

Query: 22  VAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQID 195
           V +LHE               RHFPASVL QEQRD  R  L + RE+K  QA LDR +++
Sbjct: 2   VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 196 NDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEE 372
           +   L +EKK    D+Y + FERQLLY PGLWYL P   + E  + S+  QS  + T + 
Sbjct: 62  DKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKN 121

Query: 373 LHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSNLHNANELIPSFGMNDISPPEKEN 537
           + V+  D L LAK+AVL SKQAASL  D     ++S+     +L P    N I P  +E 
Sbjct: 122 VDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PLREEV 180

Query: 538 IVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKT-SLIDLSDPLRLFLSGAEARQ 714
            VRS RLLERQSK+R  P+   +  E S+ R +D H K     D +DPLRLFL G E +Q
Sbjct: 181 AVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQ 240

Query: 715 LLTAKEEKEL 744
           LLT KEE EL
Sbjct: 241 LLTPKEESEL 250


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X4 [Nelumbo nucifera]
          Length = 525

 Score =  162 bits (409), Expect = 3e-37
 Identities = 110/229 (48%), Positives = 139/229 (60%), Gaps = 9/229 (3%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFPASVL QEQRD  R  L + RE+K  QA LDR ++++   L +EKK    D+Y + F
Sbjct: 8   RHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGF 67

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           ERQLLY PGLWYL P   + E  + S+  QS  + T + + V+  D L LAK+AVL SKQ
Sbjct: 68  ERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQ 127

Query: 436 AASLIVD-----SNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSA 600
           AASL  D     ++S+     +L P    N I P  +E  VRS RLLERQSK+R  P+  
Sbjct: 128 AASLAKDYELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWIPRPK 186

Query: 601 PLGDEISSLRTTDRHHKT-SLIDLSDPLRLFLSGAEARQLLTAKEEKEL 744
            +  E S+ R +D H K     D +DPLRLFL G E +QLLT KEE EL
Sbjct: 187 VVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESEL 235


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
           vinifera]
          Length = 567

 Score =  149 bits (377), Expect = 1e-33
 Identities = 104/228 (45%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLH-LREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           R FP SVL QEQRD++R     L++E+ +QA L++ Q++   S ++E  +   ++Y+ +F
Sbjct: 53  RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDD-HNQYMVNF 111

Query: 259 ERQLLYSPGLWYLSPPSQ--RENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 432
           ERQLL  PGLWY  P SQ   ++  SS  M+S+ +D +  + VK  D+LALAK+A+  SK
Sbjct: 112 ERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASK 171

Query: 433 QAASLIVDSNSNLHNAN-ELIPSFGMNDISPPE---KENIVRSTRLLERQSKKRRAPKSA 600
           QA SL    N+ L  A+ E  PS  +  IS P    +E  VRSTRLLER+SKKRR PK A
Sbjct: 172 QAVSLY--ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVA 229

Query: 601 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 744
            + +   S R   +       D  DPLRLFL G E R+LLTAKEE EL
Sbjct: 230 -VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESEL 276


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  149 bits (377), Expect = 1e-33
 Identities = 104/228 (45%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLH-LREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           R FP SVL QEQRD++R     L++E+ +QA L++ Q++   S ++E  +   ++Y+ +F
Sbjct: 47  RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDD-HNQYMVNF 105

Query: 259 ERQLLYSPGLWYLSPPSQ--RENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 432
           ERQLL  PGLWY  P SQ   ++  SS  M+S+ +D +  + VK  D+LALAK+A+  SK
Sbjct: 106 ERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASK 165

Query: 433 QAASLIVDSNSNLHNAN-ELIPSFGMNDISPPE---KENIVRSTRLLERQSKKRRAPKSA 600
           QA SL    N+ L  A+ E  PS  +  IS P    +E  VRSTRLLER+SKKRR PK A
Sbjct: 166 QAVSLY--ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVA 223

Query: 601 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 744
            + +   S R   +       D  DPLRLFL G E R+LLTAKEE EL
Sbjct: 224 -VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESEL 270


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530789|gb|ESR41972.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  149 bits (376), Expect = 2e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 49  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 108

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 109 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 168

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 169 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 226

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 227 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 270


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530788|gb|ESR41971.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  149 bits (376), Expect = 2e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 116

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 234

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 278


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530787|gb|ESR41970.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  149 bits (376), Expect = 2e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 46  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 105

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 106 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 165

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 166 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 223

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 224 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 267


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X3 [Citrus sinensis]
          Length = 561

 Score =  148 bits (373), Expect = 4e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 49  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 108

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 109 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 168

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 169 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 226

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 227 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 270


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Citrus sinensis]
          Length = 569

 Score =  148 bits (373), Expect = 4e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 116

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 234

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 278


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Citrus sinensis]
          Length = 570

 Score =  148 bits (373), Expect = 4e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 58  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 117

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 118 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 177

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 178 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 236 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 279


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
           gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
           rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  148 bits (373), Expect = 4e-33
 Identities = 106/249 (42%), Positives = 139/249 (55%), Gaps = 7/249 (2%)
 Frame = +1

Query: 19  SVAVLHEXXXXXXXXXXXXXXXRHFPASVL-QEQRDQFRSL--LHL-REEKPYQAALDRT 186
           SV + HE               RHFP SVL QEQRD +R L  LH  +E+K Y  A D+ 
Sbjct: 31  SVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQ 90

Query: 187 QIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYL-SPPSQRENRVSSLDMQSMPSDT 363
           QI+N  SLN+E   +   +    FE++LL  P L  L S     EN  S+ +MQS+ +DT
Sbjct: 91  QIENGASLNEENASNNFGQL--GFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAADT 148

Query: 364 DEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFGMNDISPPEKENIV 543
            E + V+  +++ALAK+A+  SKQAASL  D   +L ++         +   P EKE +V
Sbjct: 149 KEIVDVEPSNIVALAKKALSASKQAASLSEDLKLDLDDSLSNSLGSANSCTLPVEKEEVV 208

Query: 544 --RSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQL 717
             RSTR LERQSK+RR      + +  SS RT  R   +   D +DPLRLFL G E +QL
Sbjct: 209 TVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQL 268

Query: 718 LTAKEEKEL 744
           LTAKEE EL
Sbjct: 269 LTAKEESEL 277


>ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic
           [Amborella trichopoda]
          Length = 581

 Score =  144 bits (362), Expect = 8e-32
 Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 20/240 (8%)
 Frame = +1

Query: 85  RHFPASV-LQEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFPASV L EQRD  RS     +E+K YQ  +DR + +   S+  E K    D+YLKDF
Sbjct: 52  RHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASIGAETKNFEIDQYLKDF 111

Query: 259 ERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEELHVK-------------AYDLL 399
           ERQLLY P LWYLSP       + SL  Q  P +TD E  +K               D+L
Sbjct: 112 ERQLLYWPALWYLSPSRILPKSLLSLPFQCKPLETDIESEIKESRKKQTNCSSLNPMDVL 171

Query: 400 ALAKQAVLVSKQAASLIVDSNSNLHNAN-ELIPSFGMND--ISPPEKE--NIVRSTRLLE 564
            LAK+AV+ SK AA+L+  S+  + N + ++ P  G+ +  I  P+++    +RS R LE
Sbjct: 172 VLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICIQVPDEDMRTTIRSKRHLE 231

Query: 565 RQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 744
           RQ K+RR PK          +       K    D +DPLR FL G   +QLLT KEE EL
Sbjct: 232 RQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKEESEL 291


>gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  144 bits (362), Expect = 8e-32
 Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 20/240 (8%)
 Frame = +1

Query: 85  RHFPASV-LQEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFPASV L EQRD  RS     +E+K YQ  +DR + +   S+  E K    D+YLKDF
Sbjct: 44  RHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASIGAETKNFEIDQYLKDF 103

Query: 259 ERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEELHVK-------------AYDLL 399
           ERQLLY P LWYLSP       + SL  Q  P +TD E  +K               D+L
Sbjct: 104 ERQLLYWPALWYLSPSRILPKSLLSLPFQCKPLETDIESEIKESRKKQTNCSSLNPMDVL 163

Query: 400 ALAKQAVLVSKQAASLIVDSNSNLHNAN-ELIPSFGMND--ISPPEKE--NIVRSTRLLE 564
            LAK+AV+ SK AA+L+  S+  + N + ++ P  G+ +  I  P+++    +RS R LE
Sbjct: 164 VLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICIQVPDEDMRTTIRSKRHLE 223

Query: 565 RQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 744
           RQ K+RR PK          +       K    D +DPLR FL G   +QLLT KEE EL
Sbjct: 224 RQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKEESEL 283


>ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Gossypium raimondii]
          Length = 562

 Score =  142 bits (357), Expect = 3e-31
 Identities = 101/228 (44%), Positives = 134/228 (58%), Gaps = 8/228 (3%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSL---LHLREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLK 252
           RHFP SVL QEQRD  R L    + +E+K Y    D+ Q++N T+L++ K  +       
Sbjct: 54  RHFPTSVLSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEGKASN------- 106

Query: 253 DFERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 432
           +FE+Q+L  P L  LS     EN  SSL+MQS+ +DT+E ++V+   +LALAK A+  SK
Sbjct: 107 NFEQQMLQWPDL-RLSVLELGENPSSSLNMQSVAADTEETMNVEPSTILALAKNALSASK 165

Query: 433 QAASLIVDSNSNLHNANELIPSFGMNDIS--PPEKENI--VRSTRLLERQSKKRRAPKSA 600
           QA +L  D   +L ++  L  S G  + S  P E+E    VRSTR LERQSK+RR P   
Sbjct: 166 QALALAEDLKLDLDDS--LSNSLGSANSSTLPVEEEEAPTVRSTRRLERQSKRRRMPSKF 223

Query: 601 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 744
            + D  S  +T  R   +   D +DPLRLFL G E  QLLTAKEE EL
Sbjct: 224 MISDTYSLRKTNVRKKVSGSYDPNDPLRLFLRGPETTQLLTAKEESEL 271


>gb|KHG01807.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 564

 Score =  142 bits (357), Expect = 3e-31
 Identities = 100/229 (43%), Positives = 135/229 (58%), Gaps = 9/229 (3%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSL---LHLREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLK 252
           RHFP SVL QEQRD  R L    + +E+K Y    D+ Q++N T+L++EK  +       
Sbjct: 54  RHFPTSVLSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN------- 106

Query: 253 DFERQLLYSPGL-WYLSPPSQRENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVS 429
           +FE+Q+L  P L   LS     EN  SSL MQS+ +DT+E ++V+   +LALAK A+  S
Sbjct: 107 NFEQQMLQWPDLRQLLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSAS 166

Query: 430 KQAASLIVDSNSNLHNANELIPSFGM-NDISPPEKEN---IVRSTRLLERQSKKRRAPKS 597
           KQA +L  D   +L ++  +  S G  N  + P +E+    VRSTR LERQSK+RR P  
Sbjct: 167 KQALALAEDLKLDLDDS--ISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSK 224

Query: 598 APLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + +  SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL
Sbjct: 225 FMISETYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESEL 273


>gb|KDO48082.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 532

 Score =  142 bits (357), Expect = 3e-31
 Identities = 95/224 (42%), Positives = 128/224 (57%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   I+ +    +EK     D+ ++D 
Sbjct: 20  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDL 79

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 80  EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 139

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+       R LER+SKKR+  K      E
Sbjct: 140 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 197

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 198 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 241


>gb|KDO48081.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 378

 Score =  142 bits (357), Expect = 3e-31
 Identities = 95/224 (42%), Positives = 128/224 (57%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   I+ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDL 116

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+       R LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 278


>gb|KDO48080.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 361

 Score =  142 bits (357), Expect = 3e-31
 Identities = 95/224 (42%), Positives = 128/224 (57%), Gaps = 4/224 (1%)
 Frame = +1

Query: 85  RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 258
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   I+ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDL 116

Query: 259 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 435
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 436 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 615
           AASL    N  L+ A     S   +   P E+       R LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234

Query: 616 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 744
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 278