BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver30_contig00020521
         (1596 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278136.1| PREDICTED: chloroplastic group IIA intron sp...   741   0.0  
ref|XP_010278134.1| PREDICTED: chloroplastic group IIA intron sp...   741   0.0  
ref|XP_010278131.1| PREDICTED: chloroplastic group IIA intron sp...   741   0.0  
ref|XP_010278130.1| PREDICTED: chloroplastic group IIA intron sp...   741   0.0  
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...   713   0.0  
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]   709   0.0  
ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma ca...   705   0.0  
ref|XP_012473005.1| PREDICTED: chloroplastic group IIA intron sp...   699   0.0  
ref|XP_008802838.1| PREDICTED: chloroplastic group IIA intron sp...   697   0.0  
ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prun...   696   0.0  
gb|KHG05234.1| Chloroplastic group IIA intron splicing facilitat...   695   0.0  
ref|XP_009614939.1| PREDICTED: chloroplastic group IIA intron sp...   695   0.0  
ref|XP_008224429.1| PREDICTED: chloroplastic group IIA intron sp...   694   0.0  
ref|XP_009394449.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  
ref|XP_009767563.1| PREDICTED: chloroplastic group IIA intron sp...   691   0.0  
ref|XP_008362022.1| PREDICTED: chloroplastic group IIA intron sp...   689   0.0  
ref|XP_008362021.1| PREDICTED: chloroplastic group IIA intron sp...   689   0.0  
ref|XP_008391092.1| PREDICTED: chloroplastic group IIA intron sp...   688   0.0  
ref|XP_011091130.1| PREDICTED: chloroplastic group IIA intron sp...   687   0.0  
ref|XP_009767572.1| PREDICTED: chloroplastic group IIA intron sp...   687   0.0  

>ref|XP_010278136.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X4 [Nelumbo nucifera]
          Length = 880

 Score =  741 bits (1913), Expect = 0.0
 Identities = 380/537 (70%), Positives = 435/537 (81%), Gaps = 11/537 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVGE 180
            WRSG+SISLYRGVSYE+AS    +++IQ+ +   +N +  +                V E
Sbjct: 317  WRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINRDPKENSSYGAVQE 376

Query: 181  IST-----------VNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
              T           V  +PE+KYEHE+D++LD LGPRYTDWPG  PLPVDADLLPGVV  
Sbjct: 377  PQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPLPVDADLLPGVVLN 436

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            YKPP+RILPYGVRS LG+KE TALRRLAR++PPHFA+GRSRQH GLAMAM+KLWE SS+A
Sbjct: 437  YKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLAMAMIKLWERSSIA 496

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAEDIKKLTG T+L+RNKDFIVFYRGK+FL+PDVTEALLERERLA
Sbjct: 497  KIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSPDVTEALLERERLA 556

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QDEEEQARLRASS  I +++    SG  GTL ETLEADARWGK+L+D +R K+++ A
Sbjct: 557  KALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKKLDDEDRKKMMRAA 616

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            EVARH TLVRKL+ KL LA+RKL KAE+AL+KVEE LKP E+P D ESI+DEERFMFRKL
Sbjct: 617  EVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPESITDEERFMFRKL 676

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK++ KAK FDQVR++ALALEAESGGIL
Sbjct: 677  GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRNIALALEAESGGIL 736

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVD+VSKG+AIIVFRGKDY RP TLRPKNLLTKRKALARSIELQR EALY HIS + +R
Sbjct: 737  VSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRHEALYKHISTLNKR 796

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEED 1578
            V++LRSEL+QME VKD GDEELYAKLD+ Y T           AYLETY S +N+ D
Sbjct: 797  VEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLETYDSDNNDAD 853


>ref|XP_010278134.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Nelumbo nucifera]
          Length = 896

 Score =  741 bits (1913), Expect = 0.0
 Identities = 380/537 (70%), Positives = 435/537 (81%), Gaps = 11/537 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVGE 180
            WRSG+SISLYRGVSYE+AS    +++IQ+ +   +N +  +                V E
Sbjct: 317  WRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINRDPKENSSYGAVQE 376

Query: 181  IST-----------VNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
              T           V  +PE+KYEHE+D++LD LGPRYTDWPG  PLPVDADLLPGVV  
Sbjct: 377  PQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPLPVDADLLPGVVLN 436

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            YKPP+RILPYGVRS LG+KE TALRRLAR++PPHFA+GRSRQH GLAMAM+KLWE SS+A
Sbjct: 437  YKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLAMAMIKLWERSSIA 496

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAEDIKKLTG T+L+RNKDFIVFYRGK+FL+PDVTEALLERERLA
Sbjct: 497  KIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSPDVTEALLERERLA 556

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QDEEEQARLRASS  I +++    SG  GTL ETLEADARWGK+L+D +R K+++ A
Sbjct: 557  KALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKKLDDEDRKKMMRAA 616

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            EVARH TLVRKL+ KL LA+RKL KAE+AL+KVEE LKP E+P D ESI+DEERFMFRKL
Sbjct: 617  EVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPESITDEERFMFRKL 676

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK++ KAK FDQVR++ALALEAESGGIL
Sbjct: 677  GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRNIALALEAESGGIL 736

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVD+VSKG+AIIVFRGKDY RP TLRPKNLLTKRKALARSIELQR EALY HIS + +R
Sbjct: 737  VSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRHEALYKHISTLNKR 796

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEED 1578
            V++LRSEL+QME VKD GDEELYAKLD+ Y T           AYLETY S +N+ D
Sbjct: 797  VEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLETYDSDNNDAD 853


>ref|XP_010278131.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Nelumbo nucifera]
            gi|720071686|ref|XP_010278132.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X2 [Nelumbo nucifera]
            gi|720071690|ref|XP_010278133.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X2 [Nelumbo nucifera]
          Length = 914

 Score =  741 bits (1913), Expect = 0.0
 Identities = 380/537 (70%), Positives = 435/537 (81%), Gaps = 11/537 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVGE 180
            WRSG+SISLYRGVSYE+AS    +++IQ+ +   +N +  +                V E
Sbjct: 317  WRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINRDPKENSSYGAVQE 376

Query: 181  IST-----------VNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
              T           V  +PE+KYEHE+D++LD LGPRYTDWPG  PLPVDADLLPGVV  
Sbjct: 377  PQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPLPVDADLLPGVVLN 436

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            YKPP+RILPYGVRS LG+KE TALRRLAR++PPHFA+GRSRQH GLAMAM+KLWE SS+A
Sbjct: 437  YKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLAMAMIKLWERSSIA 496

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAEDIKKLTG T+L+RNKDFIVFYRGK+FL+PDVTEALLERERLA
Sbjct: 497  KIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSPDVTEALLERERLA 556

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QDEEEQARLRASS  I +++    SG  GTL ETLEADARWGK+L+D +R K+++ A
Sbjct: 557  KALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKKLDDEDRKKMMRAA 616

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            EVARH TLVRKL+ KL LA+RKL KAE+AL+KVEE LKP E+P D ESI+DEERFMFRKL
Sbjct: 617  EVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPESITDEERFMFRKL 676

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK++ KAK FDQVR++ALALEAESGGIL
Sbjct: 677  GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRNIALALEAESGGIL 736

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVD+VSKG+AIIVFRGKDY RP TLRPKNLLTKRKALARSIELQR EALY HIS + +R
Sbjct: 737  VSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRHEALYKHISTLNKR 796

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEED 1578
            V++LRSEL+QME VKD GDEELYAKLD+ Y T           AYLETY S +N+ D
Sbjct: 797  VEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLETYDSDNNDAD 853


>ref|XP_010278130.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nelumbo nucifera]
          Length = 919

 Score =  741 bits (1913), Expect = 0.0
 Identities = 380/537 (70%), Positives = 435/537 (81%), Gaps = 11/537 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVGE 180
            WRSG+SISLYRGVSYE+AS    +++IQ+ +   +N +  +                V E
Sbjct: 317  WRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINRDPKENSSYGAVQE 376

Query: 181  IST-----------VNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
              T           V  +PE+KYEHE+D++LD LGPRYTDWPG  PLPVDADLLPGVV  
Sbjct: 377  PQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPLPVDADLLPGVVLN 436

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            YKPP+RILPYGVRS LG+KE TALRRLAR++PPHFA+GRSRQH GLAMAM+KLWE SS+A
Sbjct: 437  YKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLAMAMIKLWERSSIA 496

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAEDIKKLTG T+L+RNKDFIVFYRGK+FL+PDVTEALLERERLA
Sbjct: 497  KIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSPDVTEALLERERLA 556

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QDEEEQARLRASS  I +++    SG  GTL ETLEADARWGK+L+D +R K+++ A
Sbjct: 557  KALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKKLDDEDRKKMMRAA 616

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            EVARH TLVRKL+ KL LA+RKL KAE+AL+KVEE LKP E+P D ESI+DEERFMFRKL
Sbjct: 617  EVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPESITDEERFMFRKL 676

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK++ KAK FDQVR++ALALEAESGGIL
Sbjct: 677  GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRNIALALEAESGGIL 736

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVD+VSKG+AIIVFRGKDY RP TLRPKNLLTKRKALARSIELQR EALY HIS + +R
Sbjct: 737  VSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRHEALYKHISTLNKR 796

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEED 1578
            V++LRSEL+QME VKD GDEELYAKLD+ Y T           AYLETY S +N+ D
Sbjct: 797  VEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLETYDSDNNDAD 853


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
            gi|297737163|emb|CBI26364.3| unnamed protein product
            [Vitis vinifera]
          Length = 902

 Score =  713 bits (1840), Expect = 0.0
 Identities = 372/542 (68%), Positives = 430/542 (79%), Gaps = 15/542 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQK------RKIQSPSNIDNNYYAPVAEXXXXXXXXXXX 162
            WRSG+S+SLYRGVSYE+  + +++          S S+I  N +A  +            
Sbjct: 293  WRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGS 352

Query: 163  XSEV-GEISTVNPVP--------EVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPG 315
               V    +T+N           EVKYE EIDK+LDGLGPRYTDWPG  PLP+DADLLPG
Sbjct: 353  NQNVHASQATLNITDGENKDTESEVKYEDEIDKLLDGLGPRYTDWPGCDPLPIDADLLPG 412

Query: 316  VVPGYKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWES 495
             + GY+PP+RILPYGVRS+LGLKE TALRRLARVLPPHFA+GRSRQ  GLAMAM+KLWE 
Sbjct: 413  KIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWER 472

Query: 496  SSVAKIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLER 675
            SS+AK+ALKRGVQLTTSERMAEDIKKLTGG +L+RNKDF+VFYRGK+FL+ DVTEALLER
Sbjct: 473  SSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGKNFLSSDVTEALLER 532

Query: 676  ERLAKDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKV 855
            ERLAK  QDEEEQARLRAS+   P    T   G+ GTLGETLEADARWGKRL+D ++ K+
Sbjct: 533  ERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLGETLEADARWGKRLDDHDKQKM 592

Query: 856  LQEAEVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFM 1035
            L++AEVARHA LVRKL+ +L LA+RKL KAE AL+KVEE LKP  +P D ESI+DEERFM
Sbjct: 593  LKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANRPADPESITDEERFM 652

Query: 1036 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAES 1215
            FRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK++ KAK FDQV+  ALALE+ES
Sbjct: 653  FRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESES 712

Query: 1216 GGILVSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISA 1395
            GG+LVSVDKVSKG+AI+VFRGKDY RP+TLRPKNLLTKRKALARSIELQRREALYNHISA
Sbjct: 713  GGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSIELQRREALYNHISA 772

Query: 1396 VQRRVDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEE 1575
            +QR V+ LRSE+ QM+ VKDHGDEELY KLDS Y+T           AYLETY+  ++ E
Sbjct: 773  LQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDEHTEEEGDEAYLETYADENDGE 832

Query: 1576 DD 1581
             +
Sbjct: 833  HE 834


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score =  709 bits (1831), Expect = 0.0
 Identities = 369/542 (68%), Positives = 426/542 (78%), Gaps = 15/542 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQK------RKIQSPSNIDNNYYAPVAEXXXXXXXXXXX 162
            WRSG+S+SLYRGVSYE+  + +++          S S+I  N +A  +            
Sbjct: 293  WRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGS 352

Query: 163  XSEVGEISTVNPVP---------EVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPG 315
               V        +          EVKYE EIDK+LDGLGPRYTDWP   PLP+DADLLPG
Sbjct: 353  NQNVHASQATLXITDGENKDTESEVKYEDEIDKLLDGLGPRYTDWPXCDPLPIDADLLPG 412

Query: 316  VVPGYKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWES 495
             + GY+PP+RILPYGVRS+LGLKE TALRRLARVLPPHFA+GRSRQ  GLAMAM+KLWE 
Sbjct: 413  KIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWER 472

Query: 496  SSVAKIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLER 675
            SS+AK+ALKRGVQLTTSERMAEDIKKLTGG +L+RNKDF+VFYRGK+FL+ DVTEALLER
Sbjct: 473  SSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGKNFLSSDVTEALLER 532

Query: 676  ERLAKDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKV 855
            ERLAK  QDEEEQARLRAS+   P    T   G+ GTLGETLEADARWGKRL+D ++ K+
Sbjct: 533  ERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLGETLEADARWGKRLDDHDKQKM 592

Query: 856  LQEAEVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFM 1035
            L++AEVARHA LVRKL+ +L LA+RKL KAE AL+KVEE LKP  +P D ESI+DEERFM
Sbjct: 593  LKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANRPADPESITDEERFM 652

Query: 1036 FRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAES 1215
            FRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK++ KAK FDQV+  ALALE+ES
Sbjct: 653  FRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESES 712

Query: 1216 GGILVSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISA 1395
            GG+LVSVDKVSKG+AI+VFRGKDY RP+TLRPKNLLTKRKALARSIELQRREALYNHISA
Sbjct: 713  GGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSIELQRREALYNHISA 772

Query: 1396 VQRRVDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEE 1575
            +QR V+ LRSE+ QM+ VKDHGDEELY KLDS Y+T           AYLETY+  ++ E
Sbjct: 773  LQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDEHTEEEGDEAYLETYADENDGE 832

Query: 1576 DD 1581
             +
Sbjct: 833  HE 834


>ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma cacao]
            gi|508714003|gb|EOY05900.1| CRM family member 3A isoform
            1 [Theobroma cacao]
          Length = 876

 Score =  705 bits (1820), Expect = 0.0
 Identities = 359/546 (65%), Positives = 432/546 (79%), Gaps = 14/546 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEV-- 174
            WRSG+S+SLYRGVSYE+ S H  KR  +   N    Y  P                +V  
Sbjct: 310  WRSGTSVSLYRGVSYEVPSVHLSKRIYKR--NETFTYALPSVSDKTKDLSSLGSHKDVVS 367

Query: 175  ----------GEISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVP 324
                      G   T + +PE++YE E+DK+L+GLGPRYTDWPG  PLPVDADLLPG+V 
Sbjct: 368  PQANSETAAEGNKDTES-LPEIRYEDEVDKLLEGLGPRYTDWPGCNPLPVDADLLPGIVA 426

Query: 325  GYKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSV 504
            GY+PP+R+LPYGVRS+LGLKE T+LRRLARVLPPHFA+GRSRQ  GLA+AM+KLWE SS+
Sbjct: 427  GYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHFAIGRSRQLQGLAVAMIKLWEKSSI 486

Query: 505  AKIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERL 684
            AKIALKRGVQLTTSERMAEDIKKLTGG +L+RNKDF+VFYRGK+FL+ DV EAL+ERERL
Sbjct: 487  AKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKNFLSADVAEALVERERL 546

Query: 685  AKDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQE 864
            AK  QDEEEQARLRAS+F +P T+    SGA GTLGETL+ADARWGKRL++  ++KV++E
Sbjct: 547  AKSLQDEEEQARLRASAFLVPSTEVAEQSGAAGTLGETLDADARWGKRLDNHHKEKVMKE 606

Query: 865  AEVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRK 1044
            AE+ RHA LVRKLD  L  A RKL KAE+AL KVE+ LKP ++  D ESI+DEERFMFRK
Sbjct: 607  AEILRHANLVRKLDKNLAFADRKLLKAERALTKVEDYLKPADRQADPESITDEERFMFRK 666

Query: 1045 LGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGI 1224
            LGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK++ KAK FDQV+ +ALALEAESGG+
Sbjct: 667  LGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIMKAKTFDQVKKVALALEAESGGV 726

Query: 1225 LVSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQR 1404
            LVSVD++SKGYAIIV+RGKDY RP+T+RPKNLLTKR+ALARSIELQRREAL  H+SA+Q 
Sbjct: 727  LVSVDRISKGYAIIVYRGKDYQRPSTIRPKNLLTKRRALARSIELQRREALVKHVSALQA 786

Query: 1405 RVDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHN--EED 1578
            +VD +RSE++QM ++++ GDEE Y +LDS+Y T           AYLETY S ++  EE+
Sbjct: 787  KVDKIRSEIDQMHSMEEQGDEEFYDRLDSSYPTDDDDTEEEGDEAYLETYESENDAEEEN 846

Query: 1579 DDYDYN 1596
            D+  +N
Sbjct: 847  DELIHN 852


>ref|XP_012473005.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Gossypium raimondii]
            gi|763754573|gb|KJB21904.1| hypothetical protein
            B456_004G020400 [Gossypium raimondii]
          Length = 853

 Score =  699 bits (1803), Expect = 0.0
 Identities = 356/542 (65%), Positives = 427/542 (78%), Gaps = 12/542 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVG- 177
            WRSG+SISLYRGVSYE+ S H  K+  +   N  + Y +P+               +V  
Sbjct: 298  WRSGTSISLYRGVSYEVPSVHLNKQIYKR--NEMSTYSSPLVSDKTEDPSGLVPHKDVAP 355

Query: 178  ----------EISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
                      E     P+PE+KYE E+DK+L+GLGPRY DWPG  PLPVDADLLPG+VPG
Sbjct: 356  PQSNSETATEEHKNTEPLPEIKYEDEVDKLLEGLGPRYADWPGCDPLPVDADLLPGIVPG 415

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            Y+PP+R+LPYGVRS+LG+KE T+LRRLARVLPPHFA+GRSRQ  GLA+AM KLWE SS+A
Sbjct: 416  YQPPFRVLPYGVRSSLGVKEATSLRRLARVLPPHFAIGRSRQLQGLAVAMTKLWEKSSIA 475

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAED+KKLTGG +L+RNKDF+VFYRGK+FL+ DV EALLERERLA
Sbjct: 476  KIALKRGVQLTTSERMAEDLKKLTGGILLSRNKDFLVFYRGKNFLSADVAEALLERERLA 535

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QD EEQARLRAS+ F   T+    SGA GTLGETL+ADARWGKRL+D  ++KVL+EA
Sbjct: 536  KSLQDVEEQARLRASALFAQSTEVAEQSGAAGTLGETLDADARWGKRLDDHHKEKVLKEA 595

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            E+ RHA LVRKL+  L  A+RKL KAE+AL+KVE+ LKP ++  D ESI+DEERFMFRKL
Sbjct: 596  EILRHANLVRKLEKNLAFAERKLLKAERALSKVEDYLKPADRQADPESITDEERFMFRKL 655

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK++ KAKNFDQV+ +A+ALEAESGG+L
Sbjct: 656  GLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIMKAKNFDQVKKVAIALEAESGGVL 715

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVDK+SKGYAIIV+RGKDY RP+T+RPKNLLTKR+ALARSIELQRREAL  HISA+Q +
Sbjct: 716  VSVDKISKGYAIIVYRGKDYERPSTIRPKNLLTKRRALARSIELQRREALVKHISALQAK 775

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTY-STXXXXXXXXXXXAYLETYSSVHNEEDDD 1584
            V+ LRSE++QM ++   GDEE Y +LDS+Y S            AYL TY   ++ E+++
Sbjct: 776  VEKLRSEIDQMHSMDARGDEEFYDRLDSSYPSDDDDDTEEEGDEAYLGTYDGENDGEEEN 835

Query: 1585 YD 1590
             D
Sbjct: 836  DD 837


>ref|XP_008802838.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Phoenix dactylifera]
          Length = 895

 Score =  697 bits (1800), Expect = 0.0
 Identities = 361/538 (67%), Positives = 417/538 (77%), Gaps = 9/538 (1%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNID----NNYYAPVAEXXXXXXXXXXXXS 168
            WRSG+SISLYRGV YE+     ++ +    S +D    + YY                  
Sbjct: 292  WRSGTSISLYRGVGYEIPQPEKKQYQSVQRSAVDTFNKDTYYPTGVSIENGRGNNIQDLH 351

Query: 169  E-----VGEISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGYK 333
            E     + +     P  E+KYEHEIDK+LDGLGPRYTDWPG  PLPVDADLLPGV+PGYK
Sbjct: 352  EDLTASLEKKKDTEPDAEIKYEHEIDKLLDGLGPRYTDWPGSGPLPVDADLLPGVIPGYK 411

Query: 334  PPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAKI 513
            PP+RILPYGVR  LGLKEGTALRRLAR+LPPHFA+GRSRQH GLA AMVKLWE SS+AKI
Sbjct: 412  PPFRILPYGVRRTLGLKEGTALRRLARLLPPHFALGRSRQHQGLAAAMVKLWEKSSIAKI 471

Query: 514  ALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAKD 693
            ALKRGVQLTTSERMAE+IKKLTGGT+L+ NKD++VFYRGKDFL P+VTEALLERE LAK 
Sbjct: 472  ALKRGVQLTTSERMAEEIKKLTGGTILSSNKDYLVFYRGKDFLAPEVTEALLERETLAKT 531

Query: 694  YQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAEV 873
             QDEEEQARLRASS  +   +     G  GTLGETLEADARWG RL++   +K+++ AE+
Sbjct: 532  LQDEEEQARLRASSSVVSNFEIADEPGTAGTLGETLEADARWGNRLDEDHMEKMMRAAEM 591

Query: 874  ARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLGL 1053
            ARHA LVRKL+ +L LA+R+L KAEKALAKVEE LKP E   D ESI++EERFMFRKLGL
Sbjct: 592  ARHADLVRKLERRLSLAERRLMKAEKALAKVEESLKPAEHTVDPESITEEERFMFRKLGL 651

Query: 1054 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILVS 1233
            RMKAFLLLGRRGVF GTVENMHLHWKYRELVKV+ K K F+Q + +AL+LE+ESGG+LVS
Sbjct: 652  RMKAFLLLGRRGVFAGTVENMHLHWKYRELVKVIVKTKTFEQAKYIALSLESESGGVLVS 711

Query: 1234 VDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRVD 1413
            VDKVSKG+AIIV+RGKDY RP+TLRPKNLLTKRKALARSIELQR EAL  HIS +Q+RV+
Sbjct: 712  VDKVSKGFAIIVYRGKDYERPSTLRPKNLLTKRKALARSIELQRHEALSRHISNLQKRVE 771

Query: 1414 ILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEEDDDY 1587
             LRSEL QM+ VKD GDEELY KLDS YST           AYL T+++    + D+Y
Sbjct: 772  QLRSELVQMDNVKDQGDEELYTKLDSAYSTEDEDTEDDDDEAYLHTFNTAVVIDGDEY 829


>ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
            gi|462423956|gb|EMJ28219.1| hypothetical protein
            PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score =  696 bits (1797), Expect = 0.0
 Identities = 365/543 (67%), Positives = 428/543 (78%), Gaps = 11/543 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVG- 177
            WRSG+S+SLYRGVSYE+ S    KR I   ++I +     VA+            S V  
Sbjct: 314  WRSGTSLSLYRGVSYEVPSVKLNKR-IYKKNDISSAPLPTVADKSVGDFAELASYSNVKT 372

Query: 178  ----------EISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
                      E      + EVKYE E+DK+LD LGPR+ DWPG  PLPVDAD+LPG+VPG
Sbjct: 373  PQEKSENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWPGCDPLPVDADMLPGIVPG 432

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            Y+PP+R+LPYGVRS LGLKE T+LRRLARVLPPHFA+GRSRQ  GLA+AM KLWE S +A
Sbjct: 433  YQPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQLQGLAVAMAKLWEKSLIA 492

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAEDIK+LTGG ML+RNKDF+VFYRGK+FL+PDVTEALLERERLA
Sbjct: 493  KIALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGKNFLSPDVTEALLERERLA 552

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QDEEEQARLRAS+ FIP  +     G  GTLGETL+ADA+WGKRL   +++KV++EA
Sbjct: 553  KSLQDEEEQARLRASAMFIPNVEVAQHFGTAGTLGETLDADAKWGKRL---DKEKVMREA 609

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            ++ RHA LVRKL+ KL  A+RKL +AE+AL+KVEE LKP +Q  D ESI+DEERFMFRKL
Sbjct: 610  DILRHAHLVRKLERKLSFAERKLMRAEQALSKVEESLKPSKQQADPESITDEERFMFRKL 669

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+M  AK F+QV+++ALALEAESGG+L
Sbjct: 670  GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKTFEQVKNIALALEAESGGVL 729

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVDKVSK +AIIV+RGKDYHRP+TLRPKNLLTKRKALARSIELQR+EAL  HISAVQ +
Sbjct: 730  VSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIELQRQEALLKHISAVQSK 789

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEEDDDY 1587
            VD LRSE+ QM++VKD GDE LY KLDS+Y T           AYLETY+   NE +D+ 
Sbjct: 790  VDTLRSEIEQMDSVKDQGDEALYNKLDSSYPT--DDEDSEEVDAYLETYNR-ENEGEDEG 846

Query: 1588 DYN 1596
            +Y+
Sbjct: 847  NYS 849


>gb|KHG05234.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 853

 Score =  695 bits (1793), Expect = 0.0
 Identities = 354/542 (65%), Positives = 426/542 (78%), Gaps = 12/542 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVG- 177
            WRSG+SISLYRGVSYE+ S H  K+  +   N  + Y +P+               +V  
Sbjct: 298  WRSGTSISLYRGVSYEVPSVHLNKQIYKR--NEMSTYSSPLVSDKTEDPSDLVPHKDVAP 355

Query: 178  ----------EISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
                      E     P+PE+KYE E+DK+L+GLGPRY DWPG  PLPVDADLLPG+VPG
Sbjct: 356  PQTNSETATEEHKNTEPLPEIKYEDEVDKLLEGLGPRYADWPGCDPLPVDADLLPGIVPG 415

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            Y+PP+R+LPYGVRS+LG+KE T+LRRLARVLPPHFA+GRSRQ  GLA+AM KLWE SS+A
Sbjct: 416  YQPPFRVLPYGVRSSLGVKEATSLRRLARVLPPHFALGRSRQLQGLAVAMTKLWEKSSIA 475

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAED+KKLTGG +L+RNKDF+VFYRGK+FL+ DV EALLERERLA
Sbjct: 476  KIALKRGVQLTTSERMAEDLKKLTGGILLSRNKDFLVFYRGKNFLSADVAEALLERERLA 535

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QD EEQARLRAS+ F   T+    SGA GTLGETL+ADARWGKRL+D  ++KVL+EA
Sbjct: 536  KSLQDVEEQARLRASALFAQSTEVAEQSGAAGTLGETLDADARWGKRLDDHHKEKVLKEA 595

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            E+ RHA LVRKL+  L  A+RKL KAE+AL+KVE+ LKP ++  D ESI+DEERFMFRKL
Sbjct: 596  EILRHANLVRKLEKNLAFAERKLLKAEQALSKVEDYLKPADRQADPESITDEERFMFRKL 655

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK++ KAKNFDQV+ +A+ALEAESGG+L
Sbjct: 656  GLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIMKAKNFDQVKKVAIALEAESGGVL 715

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVDK+SKGYAIIV+RG DY RP+T+RPKNLLTKR+ALARSIELQRREAL  HISA+Q +
Sbjct: 716  VSVDKISKGYAIIVYRGNDYERPSTIRPKNLLTKRRALARSIELQRREALVKHISALQAK 775

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTY-STXXXXXXXXXXXAYLETYSSVHNEEDDD 1584
            V+ +RSE++QM ++   GDEE Y +LDS+Y S            AYL TY   ++ E+++
Sbjct: 776  VEKIRSEIDQMHSMDARGDEEFYDRLDSSYPSDDDDDTEEEGDEAYLGTYDGENDGEEEN 835

Query: 1585 YD 1590
             D
Sbjct: 836  DD 837


>ref|XP_009614939.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana tomentosiformis]
          Length = 856

 Score =  695 bits (1793), Expect = 0.0
 Identities = 359/547 (65%), Positives = 420/547 (76%), Gaps = 20/547 (3%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVGE 180
            WRSGSS++LYRGVSYE  SE  +KR ++       N  +P+ +            SE   
Sbjct: 296  WRSGSSVALYRGVSYETPSERMKKRIMRRDEIRHKN--SPIVDDESNQNP-----SETSP 348

Query: 181  ISTVNPV-----------------PEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLL 309
             S +NP+                 PEV YE E+DK+LDGLGPRYTDWPG +PLP+DADLL
Sbjct: 349  RSDMNPLRPESANTSEENGNIVRQPEVNYEDEVDKLLDGLGPRYTDWPGAEPLPLDADLL 408

Query: 310  PGVVPGYKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLW 489
            PG+VPGY+PPYR+LPYG+RS LG KE TALRRLAR+LPPHFA+GRSRQH GLA AM+KLW
Sbjct: 409  PGLVPGYQPPYRLLPYGLRSTLGTKEATALRRLARILPPHFALGRSRQHQGLASAMIKLW 468

Query: 490  ESSSVAKIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALL 669
            + SS+AKIA+KRGVQLTTSERMAEDIKKLTGG +L+RNKDF+VFYRGKDFL+P+V EALL
Sbjct: 469  QRSSIAKIAIKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKDFLSPEVAEALL 528

Query: 670  ERERLAKDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERD 849
            E+ERLAK  QDEEEQARLRAS         +  S   GTLGETL+ADARWGKRL+D +++
Sbjct: 529  EKERLAKTLQDEEEQARLRASVSLTVGVAISDSSRTAGTLGETLDADARWGKRLDDKDKE 588

Query: 850  KVLQEAEVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEER 1029
             V++EAE+ RHA LVRKL+ KL  A+RKL KAE+ L+KVEE L P+++  + +S++DEER
Sbjct: 589  NVMREAEIVRHADLVRKLEKKLAFAERKLVKAERVLSKVEETLNPLDRRAEPDSLTDEER 648

Query: 1030 FMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEA 1209
            FMFRKLGLRMKAFLLLGRRG+FDGTVENMHLHWKYRELVK+M KAKNF+QV  +ALALEA
Sbjct: 649  FMFRKLGLRMKAFLLLGRRGIFDGTVENMHLHWKYRELVKIMVKAKNFEQVSKIALALEA 708

Query: 1210 ESGGILVSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHI 1389
            ESGG+LVSVDKVSKGYAIIVFRGKDY RP TLRPKNLLTKRKALARSIELQRREAL  HI
Sbjct: 709  ESGGVLVSVDKVSKGYAIIVFRGKDYSRPPTLRPKNLLTKRKALARSIELQRREALLKHI 768

Query: 1390 SAVQRRVDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSS--- 1560
            S VQ RV  L +E+ Q+ +VKD GD+ELY KLDS YST            Y+E Y S   
Sbjct: 769  STVQTRVQQLTAEIEQLASVKDSGDDELYDKLDSAYSTEDEDSEEEGEETYIEVYDSDID 828

Query: 1561 VHNEEDD 1581
            V N  DD
Sbjct: 829  VVNRSDD 835


>ref|XP_008224429.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Prunus mume]
          Length = 899

 Score =  694 bits (1790), Expect = 0.0
 Identities = 361/537 (67%), Positives = 427/537 (79%), Gaps = 10/537 (1%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELAS-----EHHQKRKIQS---PSNIDNNY--YAPVAEXXXXXXX 150
            WRSG+S+SLYRGVSYE+ S     + ++K    S   P+  D +   +A +A        
Sbjct: 314  WRSGTSLSLYRGVSYEVPSVKLNKQIYKKNDTSSAPFPTVADKSVGDFAELASYSNVKTP 373

Query: 151  XXXXXSEVGEISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGY 330
                 +   E      + EVKYE E+DK+LD LGPR+ DWPG  PLPVDAD+LPG+VPGY
Sbjct: 374  KEKLENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWPGCDPLPVDADMLPGIVPGY 433

Query: 331  KPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAK 510
            +PP+R+LPYGVRS LGLKE T+LRRLARVLPPHFA+GRSRQ  GLA+AM KLWE S +AK
Sbjct: 434  QPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQLQGLAVAMAKLWEKSLIAK 493

Query: 511  IALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAK 690
            IALKRGVQLTTSERMAEDIK+LTGG ML+RNKDF+VFYRGK+FL+PDVTEALLERERLAK
Sbjct: 494  IALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGKNFLSPDVTEALLERERLAK 553

Query: 691  DYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAE 870
              QDEEEQARLRAS+  IP  +     G TGTLGETL+ADA+WGKRL   +++KV++EA+
Sbjct: 554  SLQDEEEQARLRASAMIIPNVEVAQHFGTTGTLGETLDADAKWGKRL---DKEKVMREAD 610

Query: 871  VARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLG 1050
            + RHA LVRKL+ KL  A+RKL +AE+AL+KVEE LKP +Q  D ESI+DEERFMFRKLG
Sbjct: 611  ILRHAHLVRKLERKLSFAERKLMRAEQALSKVEESLKPSKQQADPESITDEERFMFRKLG 670

Query: 1051 LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILV 1230
            LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+M  AK F+QV+++ALALEAESGG+LV
Sbjct: 671  LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKTFEQVKNIALALEAESGGVLV 730

Query: 1231 SVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRV 1410
            SVDKVSK +AIIV+RGKDYHRP+TLRPKNLLTKRKALARSIELQR+EAL  HISAVQ +V
Sbjct: 731  SVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIELQRQEALLKHISAVQSKV 790

Query: 1411 DILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEEDD 1581
            D LR E+ QM++VKD GDE LY KLDS+Y T           AYLETY+S ++ ED+
Sbjct: 791  DTLRCEIEQMDSVKDQGDEALYNKLDSSYPT--DDEDSEEGDAYLETYNSENDGEDE 845


>ref|XP_009394449.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Musa acuminata subsp. malaccensis]
          Length = 918

 Score =  692 bits (1787), Expect = 0.0
 Identities = 366/552 (66%), Positives = 419/552 (75%), Gaps = 20/552 (3%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELAS------EHHQKRKIQS---PSNIDNNYYAPVAEXXXXXXXX 153
            WRSG+SISLYRGV+YE+        + +Q+  + S   P       +             
Sbjct: 278  WRSGTSISLYRGVTYEIPQLVKRPYQSNQRASLDSFKQPLGYRAEAFVENGRGSHVAGPI 337

Query: 154  XXXXSEVGEISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGYK 333
                 +V E   V   P+++YE EIDK+LD LGPRYTDWPG  P PVDADLLP VVPGYK
Sbjct: 338  EHLTVKVEEEKDVESPPKIEYESEIDKLLDDLGPRYTDWPGSGPPPVDADLLPSVVPGYK 397

Query: 334  PPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAKI 513
            PP+RILPYGVR +LGLKEGTALRRLAR LPPHFA+GRSRQH GLA AMVKLWE SS+AKI
Sbjct: 398  PPFRILPYGVRPSLGLKEGTALRRLARALPPHFALGRSRQHQGLAAAMVKLWEKSSIAKI 457

Query: 514  ALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAKD 693
            +LKRGVQLT+SERMAEDIKKLTGG +L+RNKD+IVFYRGKDFL+P+VTEALLERERLAK 
Sbjct: 458  SLKRGVQLTSSERMAEDIKKLTGGAILSRNKDYIVFYRGKDFLSPEVTEALLERERLAKA 517

Query: 694  YQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAEV 873
             QDEEEQARLRASS      D    SG  GTL ETLEA ARWG  + D   DK+++ AE+
Sbjct: 518  LQDEEEQARLRASSSVASDVDSFDESGTAGTLNETLEAAARWGNNIGDDHMDKMMRAAEM 577

Query: 874  ARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLGL 1053
            ARHA LV+KL+ KL +A+RKL KA KALAKVEE LKP E   D E+I+DEERFMFRKLGL
Sbjct: 578  ARHAGLVKKLERKLFIAERKLTKAGKALAKVEESLKPTEHVKDPEAITDEERFMFRKLGL 637

Query: 1054 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILVS 1233
            RMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK++ KAK F QV+++ALALEAESGG+LVS
Sbjct: 638  RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFAQVQNVALALEAESGGVLVS 697

Query: 1234 VDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRVD 1413
            VDK+SKG+AIIV+RGKDYHRP TLRPKNLLTKRKALARSIELQRREAL  HIS VQ++V+
Sbjct: 698  VDKISKGFAIIVYRGKDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNVQKKVE 757

Query: 1414 ILRSELNQMETVKDHGDEELYAKLDSTYST-XXXXXXXXXXXAYLETYS----------S 1560
             LRSEL  ++ VKDHGDEELYA LDS YST            AYL+T++           
Sbjct: 758  QLRSELVHLDNVKDHGDEELYANLDSAYSTEDEEDSEDEGDEAYLDTFNGSVAIDRDDGD 817

Query: 1561 VHNEEDDDYDYN 1596
             HN  DDD DYN
Sbjct: 818  AHNHNDDD-DYN 828


>ref|XP_009767563.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nicotiana sylvestris]
          Length = 859

 Score =  691 bits (1784), Expect = 0.0
 Identities = 360/542 (66%), Positives = 415/542 (76%), Gaps = 12/542 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQ-------SPSNIDNNYYAPVAEXXXXXXXXXX 159
            WRSG+S++LYRGVSYE  SE  +KR ++       SP   D +   P             
Sbjct: 297  WRSGTSVALYRGVSYETPSERMKKRIMRNEIRRKNSPIVDDESNQNPSESSPSNYVNSLR 356

Query: 160  XXSEVGEISTVNPV--PEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGYK 333
              S        N V  PEV YE E+DK+LDGLGPRYTDWPG +PLPVDADLLPG+VPGY+
Sbjct: 357  PESANTSEENGNIVRQPEVNYEDEVDKLLDGLGPRYTDWPGAEPLPVDADLLPGIVPGYQ 416

Query: 334  PPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAKI 513
            PPYR+LPYGVRS LG KE TALRRLAR+LPPHFA+GRSRQH GLA AM+KLW+ SS+AKI
Sbjct: 417  PPYRLLPYGVRSTLGTKEATALRRLARILPPHFALGRSRQHQGLASAMIKLWQRSSIAKI 476

Query: 514  ALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAKD 693
            A+KRGVQLTTSERMAEDIKKLTGG +L+RNKDF+VFYRGKDFL+P+V EALLE+E LAK 
Sbjct: 477  AIKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKDFLSPEVAEALLEKESLAKM 536

Query: 694  YQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAEV 873
             QDEEEQARL AS            S   GTLGETL+ADARWGKRL+D +++ V++EAE+
Sbjct: 537  LQDEEEQARLGASVSLTAGVATIDSSRTAGTLGETLDADARWGKRLDDKDKETVMREAEI 596

Query: 874  ARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLGL 1053
             RHA LVRKL+ KL  A+RKL KAE+ L+KVEE L P+++  + +S++DEERFMFRKLGL
Sbjct: 597  VRHADLVRKLEKKLVFAERKLMKAERVLSKVEETLNPLDRRAEPDSLTDEERFMFRKLGL 656

Query: 1054 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILVS 1233
            RMKAFLLLGRRG+FDGTVENMHLHWKYRELVK+M KAKNF+QV  +ALALEAESGG+LVS
Sbjct: 657  RMKAFLLLGRRGIFDGTVENMHLHWKYRELVKIMVKAKNFEQVSKIALALEAESGGVLVS 716

Query: 1234 VDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRVD 1413
            VDKVSKGYAIIVFRGKDY RP TLRPKNLLTKRKALARSIELQRREAL  HIS VQ RV 
Sbjct: 717  VDKVSKGYAIIVFRGKDYSRPPTLRPKNLLTKRKALARSIELQRREALLKHISTVQTRVQ 776

Query: 1414 ILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSS---VHNEEDDD 1584
             L +E+ Q+ +VKD GD+ELY KLDS YST           AY+E Y S   V N  DD 
Sbjct: 777  QLTAEIEQLASVKDSGDDELYDKLDSAYSTEDEVSEEEGDEAYIEVYDSDNDVVNSSDDS 836

Query: 1585 YD 1590
             D
Sbjct: 837  DD 838


>ref|XP_008362022.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Malus domestica]
          Length = 864

 Score =  689 bits (1779), Expect = 0.0
 Identities = 353/537 (65%), Positives = 422/537 (78%), Gaps = 10/537 (1%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQS--------PSNIDNNY--YAPVAEXXXXXXX 150
            WRSG+S+SLYRGVSYE+ S    KR  +         P+  D     +  +A        
Sbjct: 284  WRSGTSLSLYRGVSYEVPSVQLNKRIYKKNDSSSASLPTVADKXVGDFVEIASYXNVNTP 343

Query: 151  XXXXXSEVGEISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGY 330
                 S   E      +PEVKYE E+D++LD LGPR+ DWPG  PLPVDAD+LPG+VPGY
Sbjct: 344  QEKLESTFLEKKDTEQLPEVKYEDEVDELLDXLGPRFKDWPGCDPLPVDADMLPGIVPGY 403

Query: 331  KPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAK 510
            +PP+R+LPYGVRS+LGL+E T+LRRLARVLPPHFA+GRSRQ  GLA+AM KLWE S + K
Sbjct: 404  EPPFRVLPYGVRSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVAMAKLWERSLIXK 463

Query: 511  IALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAK 690
            IALKRGVQLTTSERMAEDIK+LTGG +L+RNKDF+VFYRGK+FL+P+VTEALLERERLAK
Sbjct: 464  IALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEVTEALLERERLAK 523

Query: 691  DYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAE 870
              QDEEEQARLRAS+  IP  ++    G  GTLGETL+ADA+WGKR+++  + KV+QEA+
Sbjct: 524  SLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLGETLDADAKWGKRMDNHHKKKVMQEAD 583

Query: 871  VARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLG 1050
            + RH+ L RKL+ KL  A+RKL KAE+AL+KVEECLKP     D +SI+DEERFMFRKLG
Sbjct: 584  ILRHSNLXRKLERKLAFAERKLMKAEQALSKVEECLKPSMXQADPDSITDEERFMFRKLG 643

Query: 1051 LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILV 1230
            LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+M  AK+F+QV+ +ALALEAESGG+LV
Sbjct: 644  LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIALALEAESGGVLV 703

Query: 1231 SVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRV 1410
            SVDKVSK +AIIV+RGKDYHRP+TLRPKNLLTKRKALARSIE+QR+EAL  HIS VQ +V
Sbjct: 704  SVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEALLKHISVVQSKV 763

Query: 1411 DILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEEDD 1581
            D LRSE+ QM+ VK+HGDE LY KLDS+Y T            YLETYS+ ++ ED+
Sbjct: 764  DTLRSEIEQMDAVKEHGDEVLYDKLDSSYPT-DDDDDSEEEDVYLETYSAENDGEDE 819


>ref|XP_008362021.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Malus domestica]
          Length = 882

 Score =  689 bits (1779), Expect = 0.0
 Identities = 353/537 (65%), Positives = 422/537 (78%), Gaps = 10/537 (1%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQS--------PSNIDNNY--YAPVAEXXXXXXX 150
            WRSG+S+SLYRGVSYE+ S    KR  +         P+  D     +  +A        
Sbjct: 302  WRSGTSLSLYRGVSYEVPSVQLNKRIYKKNDSSSASLPTVADKXVGDFVEIASYXNVNTP 361

Query: 151  XXXXXSEVGEISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGY 330
                 S   E      +PEVKYE E+D++LD LGPR+ DWPG  PLPVDAD+LPG+VPGY
Sbjct: 362  QEKLESTFLEKKDTEQLPEVKYEDEVDELLDXLGPRFKDWPGCDPLPVDADMLPGIVPGY 421

Query: 331  KPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAK 510
            +PP+R+LPYGVRS+LGL+E T+LRRLARVLPPHFA+GRSRQ  GLA+AM KLWE S + K
Sbjct: 422  EPPFRVLPYGVRSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVAMAKLWERSLIXK 481

Query: 511  IALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAK 690
            IALKRGVQLTTSERMAEDIK+LTGG +L+RNKDF+VFYRGK+FL+P+VTEALLERERLAK
Sbjct: 482  IALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEVTEALLERERLAK 541

Query: 691  DYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAE 870
              QDEEEQARLRAS+  IP  ++    G  GTLGETL+ADA+WGKR+++  + KV+QEA+
Sbjct: 542  SLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLGETLDADAKWGKRMDNHHKKKVMQEAD 601

Query: 871  VARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLG 1050
            + RH+ L RKL+ KL  A+RKL KAE+AL+KVEECLKP     D +SI+DEERFMFRKLG
Sbjct: 602  ILRHSNLXRKLERKLAFAERKLMKAEQALSKVEECLKPSMXQADPDSITDEERFMFRKLG 661

Query: 1051 LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILV 1230
            LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+M  AK+F+QV+ +ALALEAESGG+LV
Sbjct: 662  LRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIALALEAESGGVLV 721

Query: 1231 SVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRV 1410
            SVDKVSK +AIIV+RGKDYHRP+TLRPKNLLTKRKALARSIE+QR+EAL  HIS VQ +V
Sbjct: 722  SVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEALLKHISVVQSKV 781

Query: 1411 DILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEEDD 1581
            D LRSE+ QM+ VK+HGDE LY KLDS+Y T            YLETYS+ ++ ED+
Sbjct: 782  DTLRSEIEQMDAVKEHGDEVLYDKLDSSYPT-DDDDDSEEEDVYLETYSAENDGEDE 837


>ref|XP_008391092.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Malus domestica]
          Length = 894

 Score =  688 bits (1776), Expect = 0.0
 Identities = 353/538 (65%), Positives = 422/538 (78%), Gaps = 11/538 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEH-----HQKRKIQSPSNIDN------NYYAPVAEXXXXXX 147
            WRSG+S+SLYRGVSYE+ S       ++K++I S ++  N        +  +A       
Sbjct: 303  WRSGTSLSLYRGVSYEVPSVQLNKRIYKKKEISSSTSFPNVADKSLGDFVELASYGNVNT 362

Query: 148  XXXXXXSEVGEISTVNPVPEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPG 327
                  S   E    + +PEVKYE E+DK+LD LGPR+ DWPG  PLPVDAD+LPG+VPG
Sbjct: 363  PQEKPESTSLEKKDTDQLPEVKYEDEVDKLLDSLGPRFKDWPGCDPLPVDADMLPGLVPG 422

Query: 328  YKPPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVA 507
            Y+PP+R+LPYGV S+LGL+E T+LRRLARVLPPHFA+GRSRQ  GLA+AM KLWE S +A
Sbjct: 423  YEPPFRVLPYGVXSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVAMAKLWERSLIA 482

Query: 508  KIALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLA 687
            KIALKRGVQLTTSERMAEDIK+LTGG +L+RNKDF+VFYRGK+FL+P+VTEALLERERLA
Sbjct: 483  KIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEVTEALLERERLA 542

Query: 688  KDYQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEA 867
            K  QDEEEQARLRAS+  IP  ++    G  GTL ETL+ADA+WGK +++  + KV+QEA
Sbjct: 543  KSLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLAETLDADAKWGKMMDNHHKKKVMQEA 602

Query: 868  EVARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKL 1047
            ++ RHA LVRKL+ KL  A+RKL KAE+AL+KVEECLKP     D +SI+DEERFMFRKL
Sbjct: 603  DILRHANLVRKLERKLAFAERKLMKAEQALSKVEECLKPSTLQADPDSITDEERFMFRKL 662

Query: 1048 GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGIL 1227
            GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+M  AK+F+QV+ +ALALEAESGG+L
Sbjct: 663  GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIALALEAESGGVL 722

Query: 1228 VSVDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRR 1407
            VSVDKVSK +AIIV+RGKDYHRP+TLRPKNLLTKRKALARSIE+QR+EAL  HIS VQ +
Sbjct: 723  VSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEALLKHISXVQSK 782

Query: 1408 VDILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSSVHNEEDD 1581
            VD LRSE+ QM+ VK+ GDE LY KLDS+Y T            YLETYS   N ED+
Sbjct: 783  VDTLRSEIEQMDVVKERGDEVLYNKLDSSYPT-DDDDDSEEEDVYLETYSXEDNGEDE 839


>ref|XP_011091130.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 886

 Score =  687 bits (1773), Expect = 0.0
 Identities = 353/540 (65%), Positives = 421/540 (77%), Gaps = 10/540 (1%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQSPSNIDNNYYAPVAEXXXXXXXXXXXXSEVGE 180
            WRSG+S++LYRGV+YE ++   +KR  +       ++ A                 EV  
Sbjct: 321  WRSGTSLALYRGVTYEDSATKLKKRIFRRNELPHKSHSATDKTGQDSSESGVLPDREVPS 380

Query: 181  ISTVNPVP---------EVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGYK 333
              +V+  P         EV+YE E+DK+LD LGPRYTDWPG  PLPVDADLLPG VPGY+
Sbjct: 381  PESVSLNPDDRDPETSSEVRYEDEVDKLLDSLGPRYTDWPGDDPLPVDADLLPGTVPGYR 440

Query: 334  PPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAKI 513
            PP+R+LPYGVRS LG+KE TALRRLARVLPPHFA+GRSRQH GLA AM+KLWE SS+AKI
Sbjct: 441  PPFRLLPYGVRSTLGMKEATALRRLARVLPPHFALGRSRQHQGLAAAMIKLWERSSIAKI 500

Query: 514  ALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAKD 693
            ALKRGVQLTTSERMAED+K+LTGG +L+RNKDF+V+YRGKDFL+PDV EALLE+ERLAK 
Sbjct: 501  ALKRGVQLTTSERMAEDLKRLTGGMLLSRNKDFLVYYRGKDFLSPDVAEALLEKERLAKA 560

Query: 694  YQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAEV 873
             QDEEEQARLRA +   P  ++T  SG  GTL ETL+AD RWGKRL+D  ++KV++EAEV
Sbjct: 561  LQDEEEQARLRALALIAPAVEETDESGTAGTLKETLDADTRWGKRLDDVHKEKVMREAEV 620

Query: 874  ARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLGL 1053
             RHA LVRKL++KL  A+RKL KAE+AL+KVEE L P ++  D ES++DEERFMFRKLGL
Sbjct: 621  LRHANLVRKLENKLAFAERKLSKAERALSKVEESLYPADRAQDPESLTDEERFMFRKLGL 680

Query: 1054 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILVS 1233
            RMKAFLLLGRRGVF GTVENMHLHWKYRELVK++ KA+N ++V+++ALALEAESGG+LVS
Sbjct: 681  RMKAFLLLGRRGVFGGTVENMHLHWKYRELVKIIVKAQNIEEVKNIALALEAESGGVLVS 740

Query: 1234 VDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRVD 1413
            VDKVSKGYAIIVFRG+DY RP+ LRPKNLLTKRKALARSIELQRREAL NH+S +Q RV+
Sbjct: 741  VDKVSKGYAIIVFRGRDYKRPSLLRPKNLLTKRKALARSIELQRREALLNHMSTLQTRVN 800

Query: 1414 ILRSELNQMETVKDHGDEELYAKLDSTYST-XXXXXXXXXXXAYLETYSSVHNEEDDDYD 1590
             LRSE+ QM  VK+ GDEELY KLDS Y T            AYL TY S ++  D++ D
Sbjct: 801  QLRSEIEQMAAVKEQGDEELYNKLDSAYLTEDEDSEEEGDEEAYLGTYDSDNDMVDENND 860


>ref|XP_009767572.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Nicotiana sylvestris]
          Length = 856

 Score =  687 bits (1773), Expect = 0.0
 Identities = 360/542 (66%), Positives = 415/542 (76%), Gaps = 12/542 (2%)
 Frame = +1

Query: 1    WRSGSSISLYRGVSYELASEHHQKRKIQ-------SPSNIDNNYYAPVAEXXXXXXXXXX 159
            WRSG+S++LYRGVSYE  SE  +KR ++       SP   D +   P             
Sbjct: 297  WRSGTSVALYRGVSYETPSERMKKRIMRNEIRRKNSPIVDDESNQNPSESSPSNYVNSLR 356

Query: 160  XXSEVGEISTVNPV--PEVKYEHEIDKILDGLGPRYTDWPGPKPLPVDADLLPGVVPGYK 333
              S        N V  PEV YE E+DK+LDGLGPRYTDWPG +PLPVDADLLPG+VPGY+
Sbjct: 357  PESANTSEENGNIVRQPEVNYEDEVDKLLDGLGPRYTDWPGAEPLPVDADLLPGIVPGYQ 416

Query: 334  PPYRILPYGVRSNLGLKEGTALRRLARVLPPHFAVGRSRQHHGLAMAMVKLWESSSVAKI 513
            PPYR+LPYGVRS LG KE TALRRLAR+LPPHFA+GRSRQH GLA AM+KLW+ SS+AKI
Sbjct: 417  PPYRLLPYGVRSTLGTKEATALRRLARILPPHFALGRSRQHQGLASAMIKLWQRSSIAKI 476

Query: 514  ALKRGVQLTTSERMAEDIKKLTGGTMLTRNKDFIVFYRGKDFLTPDVTEALLERERLAKD 693
            A+KRGVQLTTSERMAEDIKKLTGG +L+RNKDF+VFYRGKDFL+P+V EALLE+E LAK 
Sbjct: 477  AIKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKDFLSPEVAEALLEKESLAKM 536

Query: 694  YQDEEEQARLRASSFFIPITDKTSGSGATGTLGETLEADARWGKRLNDTERDKVLQEAEV 873
             QDEEEQARL AS            S   GTLGETL+ADARWGKRL+D +++ V++EAE+
Sbjct: 537  LQDEEEQARLGASVSLTAGVATIDSSRTAGTLGETLDADARWGKRLDDKDKETVMREAEI 596

Query: 874  ARHATLVRKLDSKLRLAQRKLDKAEKALAKVEECLKPVEQPTDQESISDEERFMFRKLGL 1053
             RHA LVRKL+ KL  A+RKL KAE+ L+KVEE L P+++  + +S++DEERFMFRKLGL
Sbjct: 597  VRHADLVRKLEKKLVFAERKLMKAERVLSKVEETLNPLDRRAEPDSLTDEERFMFRKLGL 656

Query: 1054 RMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMAKAKNFDQVRSLALALEAESGGILVS 1233
            RMKAFLLLGRRG+FDGTVENMHLHWKYRELVK+M KAKNF+QV  +ALALEAESGG+LVS
Sbjct: 657  RMKAFLLLGRRGIFDGTVENMHLHWKYRELVKIMVKAKNFEQVSKIALALEAESGGVLVS 716

Query: 1234 VDKVSKGYAIIVFRGKDYHRPATLRPKNLLTKRKALARSIELQRREALYNHISAVQRRVD 1413
            VDKVSKGYAIIVFRGKDY RP TLRPKNLLTKRKALARSIELQRREAL  HIS VQ RV 
Sbjct: 717  VDKVSKGYAIIVFRGKDYSRPPTLRPKNLLTKRKALARSIELQRREALLKHISTVQTRVQ 776

Query: 1414 ILRSELNQMETVKDHGDEELYAKLDSTYSTXXXXXXXXXXXAYLETYSS---VHNEEDDD 1584
             L +E+ Q+ +VKD GD+ELY KLDS YST           AY+E Y S   V N  DD 
Sbjct: 777  QLTAEIEQLASVKDSGDDELYDKLDSAYST---EDEEEGDEAYIEVYDSDNDVVNSSDDS 833

Query: 1585 YD 1590
             D
Sbjct: 834  DD 835