BLASTX nr result
ID: Papaver30_contig00016523
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver30_contig00016523
(801 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 201 4e-49
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 201 5e-49
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 197 9e-48
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 197 9e-48
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 196 1e-47
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 195 4e-47
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 192 2e-46
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 192 2e-46
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 189 2e-45
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 188 3e-45
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 188 3e-45
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 188 3e-45
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 187 1e-44
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 187 1e-44
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 186 1e-44
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 186 2e-44
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 184 8e-44
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 183 1e-43
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc... 182 3e-43
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 182 3e-43
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 201 bits (512), Expect = 4e-49
Identities = 89/153 (58%), Positives = 117/153 (76%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+LHR SC + QNG ERKHRH+VETGL+LL HA +P FWSYAF+TA +LINRMP+ V
Sbjct: 627 ILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHAGLPLKFWSYAFQTATFLINRMPSKV 686
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L N++P AL+ +PDYKFL++FGC CYP IRPYN HKL+ RS+K +FLGYS HKGY C
Sbjct: 687 LXNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLC 746
Query: 441 LNPSTNKLIISNNVVFDETEFPYKTFVCVAPTQ 343
L+ T ++ +S +VVFDET+FP+ + +P++
Sbjct: 747 LDNLTGRVYVSPHVVFDETQFPFAQNISSSPSK 779
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 201 bits (511), Expect = 5e-49
Identities = 89/153 (58%), Positives = 117/153 (76%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+LHR SC + QNG ERKHRH+VETGL+LL HA +P FWSYAF+TA +LINRMP+ V
Sbjct: 577 ILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHAGLPLKFWSYAFQTATFLINRMPSKV 636
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L N++P AL+ +PDYKFL++FGC CYP IRPYN HKL+ RS+K +FLGYS HKGY C
Sbjct: 637 LQNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLC 696
Query: 441 LNPSTNKLIISNNVVFDETEFPYKTFVCVAPTQ 343
L+ T ++ +S +VVFDET+FP+ + +P++
Sbjct: 697 LDNLTGRVYVSPHVVFDETQFPFAQNISSSPSK 729
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 197 bits (500), Expect = 9e-48
Identities = 87/143 (60%), Positives = 112/143 (78%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
++H VSC H HQQNG+ ERKHRHIVE GLSLL+HASMP FW AF+ A YLINR+P+ V
Sbjct: 594 IVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRV 653
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ N +PLE L+ + PDY L+IFGCAC+P +RPYN HKL+ RS + +FLG+S+MHKG++C
Sbjct: 654 IHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKC 713
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L ST ++ IS +VVFDE FP+
Sbjct: 714 LEVSTGRIYISRDVVFDENIFPF 736
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 197 bits (500), Expect = 9e-48
Identities = 87/143 (60%), Positives = 112/143 (78%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
++H VSC H HQQNG+ ERKHRHIVE GLSLL+HASMP FW AF+ A YLINR+P+ V
Sbjct: 627 IVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLINRVPSRV 686
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ N +PLE L+ + PDY L+IFGCAC+P +RPYN HKL+ RS + +FLG+S+MHKG++C
Sbjct: 687 IHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKC 746
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L ST ++ IS +VVFDE FP+
Sbjct: 747 LEVSTGRIYISRDVVFDENIFPF 769
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 196 bits (499), Expect = 1e-47
Identities = 87/143 (60%), Positives = 111/143 (77%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG+ ERKHRHIVE GLSLL HAS+P FW A+++ YLINRMPT V
Sbjct: 429 ITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKV 488
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
LG S+PLE L+ ++PDY+ L+ FGCAC+P +RPYN HK+ RS + FLGYS +HKG+RC
Sbjct: 489 LGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGFRC 548
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ ST ++ IS +VVFDE+ FP+
Sbjct: 549 LDSSTGRIYISRDVVFDESVFPF 571
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 195 bits (495), Expect = 4e-47
Identities = 85/143 (59%), Positives = 112/143 (78%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
++H VSC H HQQNG+ ERKHRHIVE GLSLL+HA MP FW AF+ A YLINR+P+ V
Sbjct: 470 IVHHVSCPHTHQQNGSAERKHRHIVEVGLSLLSHAHMPLKFWDEAFQAATYLINRVPSRV 529
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ N+TPLE + + PDY L++FGCAC+P +RPYNKHKL+ RS + FLG+S+MHKG++C
Sbjct: 530 IQNTTPLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRCAFLGFSNMHKGFKC 589
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ S+ ++ IS +VVFDE FP+
Sbjct: 590 LDISSGRVYISRDVVFDENIFPF 612
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 192 bits (489), Expect = 2e-46
Identities = 85/143 (59%), Positives = 111/143 (77%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG+ ERKHRHIVE GL+LL ++SMP FW AF+ A YLINR PT +
Sbjct: 600 ITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKL 659
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L TPLE L+ ++PDY L++FGCAC+P +RPYN HKL+ RS + FLGYS++HKG++C
Sbjct: 660 LQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKC 719
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+PST ++ IS +V+FDET FP+
Sbjct: 720 LDPSTGRVYISRDVIFDETNFPF 742
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 192 bits (488), Expect = 2e-46
Identities = 86/143 (60%), Positives = 110/143 (76%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG+ ERKHRHIVE GL+LL ++SMP FW AF +A YLINR P+ V
Sbjct: 598 ITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPSRV 657
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L + +PLE L PDY L++FGCAC+P +RPYNKHKL+ RS FLGYS++HKG++C
Sbjct: 658 LHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKC 717
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+PST ++ IS +VVFDET+FP+
Sbjct: 718 LDPSTGRVYISRDVVFDETQFPF 740
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 189 bits (481), Expect = 2e-45
Identities = 84/143 (58%), Positives = 110/143 (76%)
Frame = -1
Query: 795 HRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPVLG 616
H VSC H HQQNG+ ERKHRHI+E GLSLL++ASMP FW AF A YLINR+P+ +
Sbjct: 602 HHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQ 661
Query: 615 NSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRCLN 436
NSTPLE L+ + PDY L++FGCAC+P +RPYN HKL+ RS + +FLG+S+ HKG++CL+
Sbjct: 662 NSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLD 721
Query: 435 PSTNKLIISNNVVFDETEFPYKT 367
S+ ++ IS +VVFDE FP+ T
Sbjct: 722 VSSGRVYISRDVVFDENIFPFST 744
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein, partial
[Zea mays]
Length = 969
Score = 188 bits (478), Expect = 3e-45
Identities = 85/143 (59%), Positives = 105/143 (73%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG+ ERKHRHIVE GLSLL HASMP FW AF A YLINR PT +
Sbjct: 447 ISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKI 506
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L TP E L+ + PDY L+IFGC C+P +RPYN HKL+ RS + +FLGYSS+HKG++C
Sbjct: 507 LNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKC 566
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ ST ++ +S +V FDE FP+
Sbjct: 567 LDVSTGRVYVSRDVTFDENFFPF 589
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 188 bits (478), Expect = 3e-45
Identities = 85/143 (59%), Positives = 105/143 (73%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG+ ERKHRHIVE GLSLL HASMP FW AF A YLINR PT +
Sbjct: 447 ISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKI 506
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L TP E L+ + PDY L+IFGC C+P +RPYN HKL+ RS + +FLGYSS+HKG++C
Sbjct: 507 LNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKC 566
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ ST ++ +S +V FDE FP+
Sbjct: 567 LDVSTGRVYVSRDVTFDENFFPF 589
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 188 bits (478), Expect = 3e-45
Identities = 84/143 (58%), Positives = 108/143 (75%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG ERKHRHIVE GLSLL HASMP FW AF A YLINR+P+ V
Sbjct: 587 ISHHVSCPHTHQQNGAVERKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLINRLPSKV 646
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ TPLE L+ ++PDYK L+ FGCAC+P +RPYN HKL+ RS + +FLG+S++HKG++C
Sbjct: 647 IKFDTPLERLFKQTPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKC 706
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ ST ++ +S +V FDE FP+
Sbjct: 707 LDVSTGRVYVSRDVTFDEQVFPF 729
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 187 bits (474), Expect = 1e-44
Identities = 84/143 (58%), Positives = 106/143 (74%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H+VSC H HQQNG ERKHRHIVE GLSLL HASMP FW AF A YLINR+P V
Sbjct: 477 IAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKV 536
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ TPL L+ + PDYK L+ FGCAC+P +RPYN HKL+ RS + +FLG+S++HKG++C
Sbjct: 537 IDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKC 596
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L +T ++ IS +V FDE EFP+
Sbjct: 597 LEVATGQVYISRDVTFDEQEFPF 619
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 187 bits (474), Expect = 1e-44
Identities = 84/143 (58%), Positives = 106/143 (74%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H+VSC H HQQNG ERKHRHIVE GLSLL HASMP FW AF A YLINR+P V
Sbjct: 588 IAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKV 647
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ TPL L+ + PDYK L+ FGCAC+P +RPYN HKL+ RS + +FLG+S++HKG++C
Sbjct: 648 IDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKC 707
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L +T ++ IS +V FDE EFP+
Sbjct: 708 LEVATGQVYISRDVTFDEQEFPF 730
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 186 bits (473), Expect = 1e-44
Identities = 82/143 (57%), Positives = 110/143 (76%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG+ ERKHRHIVE GL+LL ++SMP FW AF +A YLINR P+ +
Sbjct: 398 ITHHVSCPHTHQQNGSAERKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVYLINRTPSRL 457
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L +TPLE L+ ++PDY L++FGCAC+P +RPYN KL+ RS + FLGYS +HKG++C
Sbjct: 458 LKYATPLERLFKQTPDYNLLRVFGCACWPHLRPYNARKLQFRSKQCTFLGYSPLHKGFKC 517
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+PST ++ IS++V+FDE FP+
Sbjct: 518 LDPSTGRVYISHDVIFDENVFPF 540
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 186 bits (471), Expect = 2e-44
Identities = 81/143 (56%), Positives = 108/143 (75%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
++HR+SC + H+QNG ERKHRHIVE G++LL AS+P +W AF T+ YLINR+PTPV
Sbjct: 649 IIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPV 708
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
L N +PLE L+ + P Y LK+FGC CYP +RP+N HKL+ RS+ FLGYS HKGY+C
Sbjct: 709 LKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKC 768
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+P+ N ++IS +V+FDE FP+
Sbjct: 769 LSPNGN-ILISRDVIFDEXAFPF 790
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 184 bits (466), Expect = 8e-44
Identities = 82/141 (58%), Positives = 106/141 (75%)
Frame = -1
Query: 795 HRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPVLG 616
H+VSC H HQQNG ERKHRHIVE GL+LL +SMP +W +AF A YLINR P+ +
Sbjct: 602 HQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIA 661
Query: 615 NSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRCLN 436
+ TPL L +PDY L+IFGCAC+P +RPYN+HKL+ RS + +FLGYS+MHKG++CL+
Sbjct: 662 HDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLD 721
Query: 435 PSTNKLIISNNVVFDETEFPY 373
ST ++ IS +VVFDE FP+
Sbjct: 722 ISTGRIYISRDVVFDEHVFPF 742
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 183 bits (464), Expect = 1e-43
Identities = 84/143 (58%), Positives = 107/143 (74%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC + HQQNG+ ERKHRHIVE GLSLL HASMP FW AF TA YLINR P+ V
Sbjct: 515 ITHHVSCPYAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLTATYLINRTPSKV 574
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ STPLE L + P+Y L+ FGCAC+P +RPYN KL+ RS + +FLGYS++HKG++C
Sbjct: 575 IQYSTPLERLLNQKPNYSSLRTFGCACWPNLRPYNNRKLQFRSKQCVFLGYSNIHKGFKC 634
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ +T ++ IS +VVFDE FP+
Sbjct: 635 LDVATGRVYISRDVVFDENIFPF 657
>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1016
Score = 182 bits (461), Expect = 3e-43
Identities = 83/143 (58%), Positives = 107/143 (74%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC + HQQNG+ ERKHRHIVE GL+LL HAS+P FW AF A YLINR+P+ V
Sbjct: 211 ISHHVSCPYAHQQNGSAERKHRHIVEVGLALLAHASVPLKFWDEAFLAATYLINRLPSKV 270
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ S PLE L + P+Y L+ FGCAC+P +RPYNK KLE RS + +FLGYS++HKG++C
Sbjct: 271 IQYSAPLERLLDQKPNYSALRTFGCACWPNLRPYNKRKLEFRSKQCVFLGYSNIHKGFKC 330
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ ST ++ IS +VVFDE FP+
Sbjct: 331 LDVSTGRVYISRDVVFDENVFPF 353
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 182 bits (461), Expect = 3e-43
Identities = 82/143 (57%), Positives = 105/143 (73%)
Frame = -1
Query: 801 VLHRVSCRHEHQQNGTTERKHRHIVETGLSLLNHASMPSSFWSYAFETANYLINRMPTPV 622
+ H VSC H HQQNG+ ERKHRHIVE GLSLL HASMP FW AF A YLINR P+ V
Sbjct: 591 ISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLINRTPSKV 650
Query: 621 LGNSTPLEALYAESPDYKFLKIFGCACYPCIRPYNKHKLENRSVKYLFLGYSSMHKGYRC 442
+ TPLE L+ + P Y L++FGCAC+P +RPYN KL+ RS + +FLGYS++HKG++C
Sbjct: 651 IQYETPLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSNLHKGFKC 710
Query: 441 LNPSTNKLIISNNVVFDETEFPY 373
L+ + ++ IS +VVFDE FP+
Sbjct: 711 LDVAAGRVYISRDVVFDENVFPF 733