BLASTX nr result
ID: Papaver30_contig00014575
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver30_contig00014575
(2766 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 410 0.0
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 458 0.0
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 393 0.0
emb|CAN65942.1| hypothetical protein VITISV_001716 [Vitis vinifera] 426 0.0
gb|KHN30958.1| Retrovirus-related Pol polyprotein from transposo... 352 e-170
gb|KHN45997.1| Retrovirus-related Pol polyprotein from transposo... 352 e-170
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 425 e-149
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 416 e-144
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 426 e-144
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 424 e-142
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc... 406 e-141
gb|EMT21953.1| ABC transporter C family member 10 [Aegilops taus... 398 e-140
emb|CAN75478.1| hypothetical protein VITISV_020209 [Vitis vinifera] 417 e-139
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 395 e-138
ref|YP_514636.1| hypothetical protein OrsaiPp07 (mitochondrion) ... 397 e-136
ref|YP_002000554.1| orf490 (mitochondrion) [Oryza sativa Japonic... 394 e-136
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza... 377 e-135
ref|XP_009359358.1| PREDICTED: uncharacterized protein LOC103949... 393 e-134
emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera] 380 e-132
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat... 369 e-130
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 410 bits (1054), Expect(3) = 0.0
Identities = 228/540 (42%), Positives = 310/540 (57%), Gaps = 24/540 (4%)
Frame = +1
Query: 829 CV-LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQPEDSSNAAITSVT---- 993
CV LGYS HKGY + LTG++ +S VVFDE FP+A+ S +A+ SV
Sbjct: 682 CVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQNISSSPSKDASDESVIPAII 741
Query: 994 -----------------VLPSSTSATAIDPPTTIINEVXXXXXXXXXXXXXXXXXXXXXX 1122
P+ TSA P T +
Sbjct: 742 VSSNPSTLSFHGSNHSMASPNLTSALTHPTPPT---DTPTTRSLREXVLEAEVTLPAQQQ 798
Query: 1123 XXXXXHSMTTRRKQGIFKPKVYAYEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALL 1302
+TTR GI K K + I PT +A KDP W +M +I AL
Sbjct: 799 VVVPPPRVTTRSMSGITKRK---HIFNLAAFKISEPTTLKQAIKDPNWAEAMQTEIAALH 855
Query: 1303 QNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPV 1482
+N TW LV NIIGCKW++++K DG+++RYKARLVA+G+NQ G+DY + F+PV
Sbjct: 856 KNQTWDLVDPPKDVNIIGCKWVYKLKYKPDGSVDRYKARLVARGFNQTFGLDYFETFSPV 915
Query: 1483 VKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKK 1662
VK TIR++++I+L W++RQLDV+N FL+G L E+V+M PPG+ P+ VCKLKK
Sbjct: 916 VKAATIRIVLTIALSYRWELRQLDVQNXFLNGDLVEQVYMAXPPGFLHPNHPNKVCKLKK 975
Query: 1663 SLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXX 1842
+LYGLKQ+PRAWF + S L+ GF +S+ D+S+F L V++YVDDI+VTG
Sbjct: 976 ALYGLKQSPRAWFTKXSSALLSWGFNSSRXDSSMFVHFGTHSTLIVLVYVDDIIVTGSSP 1035
Query: 1843 XXXXXXXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPY 2022
FA++DLG+L +FLGI+ + + +HLSQ +YI++LL +T M SK
Sbjct: 1036 VLIQQLIHKLHSLFALRDLGQLSYFLGIEVTYDGGSMHLSQSKYITDLLQRTSMLDSKAA 1095
Query: 2023 STP--FAPSTTSHPSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHW 2196
+TP S + L + +YRSVVGALQYAT+TRPDIAF VNKACQ M PT HW
Sbjct: 1096 ATPGTVGLSLSQFDGDLMDDVTMYRSVVGALQYATLTRPDIAFSVNKACQFMHRPTSTHW 1155
Query: 2197 TAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISW 2376
++VKRILRYL+GT +GL + S+ +Q ++DAD DRRS+ G ++LG NL+SW
Sbjct: 1156 SSVKRILRYLKGTTTHGLXLQPSAHFTVQAYTDADWGAQPDDRRSSSGYLVYLGNNLVSW 1215
Score = 247 bits (631), Expect(3) = 0.0
Identities = 131/318 (41%), Positives = 179/318 (56%), Gaps = 39/318 (12%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHDDCTFTLSNVLHVPSITRNLIH--QFTKENNCFFEFH 176
D V +GNG L IS+ G + L + +F L V HVP I+ NLI +F +NN EFH
Sbjct: 369 DKVTIGNGKHLTISNTGFTRLFSNPHSFQLKKVFHVPFISANLISVAKFCSDNNALIEFH 428
Query: 177 HDKFYVKDVITNKVLLTGPIRDGLYH---------------------------------- 254
+ F+VKD+ T +VL G + +GLY
Sbjct: 429 SNGFFVKDLHTKRVLAQGKLENGLYKFPVISNRKTAYVGITNDSTFQCSTIGNKRELWHH 488
Query: 255 --LDLIHSDVW-VSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVEN 425
L+L+++D+W + + S +G KY++ F++ +SR+TW+Y L K + L F +FK VEN
Sbjct: 489 SLLELVYTDIWGPASVTSTSGAKYFILFVDDYSRYTWLYLLQSKDQALPIFKQFKLQVEN 548
Query: 426 QLQRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXX 605
Q KIK +QSD GGE+R+ ++L GI HR SCP+ +QNGR RKHRH+VET
Sbjct: 549 QFDAKIKCLQSDNGGEFRSFMSFLQESGILHRFSCPYNSSQNGRVERKHRHVVETGLALL 608
Query: 606 XXXXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLR 785
FWSYAF+TA FLINR+P+ L SP LF+ PDY FL FGC C P +R
Sbjct: 609 AHAGLPLKFWSYAFQTATFLINRMPSKVLQNASPYFALFKRNPDYKFLRVFGCLCYPFIR 668
Query: 786 PFNAHKLEPRSVRCVCFG 839
P+N HKL+ RS++CV G
Sbjct: 669 PYNNHKLQYRSLKCVFLG 686
Score = 105 bits (261), Expect(3) = 0.0
Identities = 53/119 (44%), Positives = 75/119 (63%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
+LG + SK K VS SS E+EYR LA AT E++W Q+LL+EL P ++ DN
Sbjct: 1207 YLGNNLVSWTASKQKVVSXSSAESEYRGLAIATXEIIWTQALLSELCISJTSIPTLYYDN 1266
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRF 2707
+ A Y+ NP+FH R KHIEI H++R+ V L++++I + DQ A+I K L+ SRF
Sbjct: 1267 ISAYYMAKNPVFHARTKHIEIDLHFIRDQVLHNKLQLQYIPSTDQPADILTKHLTSSRF 1325
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 458 bits (1179), Expect(3) = 0.0
Identities = 250/526 (47%), Positives = 319/526 (60%), Gaps = 15/526 (2%)
Frame = +1
Query: 835 LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQPEDSSNAAITSVT------- 993
LGYS HKGY+ +P G I+ISRDV+FDE FP+A++ + +++ +S T
Sbjct: 757 LGYSLNHKGYKCLSP-NGNILISRDVIFDEXAFPFAQLQSQKQXTSSFSSSXTSLPCQTS 815
Query: 994 ----VLPSSTSATAIDPPTTIINEVXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMTTRRK 1161
VLPSSTS + P I H M TR K
Sbjct: 816 LPLMVLPSSTSCSTSSPTNPSI-------FPATSNHNVASQXPPSSAPPFPSHHMITRSK 868
Query: 1162 QGIFKPKVYAYEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALLQNGTWQLVQADSG 1341
GIFKPK Y PT EA + W+ +M ++ ALL+N TW LV +
Sbjct: 869 XGIFKPKAYLIST--------TPTSVPEALQLSHWKQAMTDEYLALLRNNTWDLVPPPTD 920
Query: 1342 YNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTTIRMIISIS 1521
+IGCKW+F++K N DGTI +YKARLVAKG++Q+ G D+ + F+PVVKPTTIR++++I+
Sbjct: 921 RKLIGCKWVFKVKENXDGTINKYKARLVAKGFHQIAGFDFNETFSPVVKPTTIRIVLTIA 980
Query: 1522 LYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGLKQAPRAWF 1701
L W++RQLDV NAFL+G L E++FM QP G+ D + P++VCKL KSLYGLKQAPRAWF
Sbjct: 981 LNLQWKVRQLDVNNAFLNGDLHEDIFMHQPQGFIDPVNPNYVCKLNKSLYGLKQAPRAWF 1040
Query: 1702 VRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXXXXXXXXRE 1881
+L Q L GF ++K+D SLF +T Y+++YVDDIL+TG +
Sbjct: 1041 EKLHQALGILGFSSTKSDQSLFINITPTHSTYILVYVDDILITGNNDQFVQHVITQLNNQ 1100
Query: 1882 FAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA--PSTTSH 2055
FA+KDLG++ +FLGIQ SAG+HLSQ +YISNLL KTKM K TP S ++
Sbjct: 1101 FALKDLGDIDYFLGIQVKHTSAGMHLSQAKYISNLLQKTKMLHVKSVPTPMVSNQSLSNS 1160
Query: 2056 PSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWTAVKRILRYLQGT 2235
S F LYRS VGALQYATITRPDI + VN+ CQ MQ P AHW AVKRILRYL GT
Sbjct: 1161 GSAPFSNTQLYRSTVGALQYATITRPDITYSVNRVCQFMQDPLTAHWKAVKRILRYLAGT 1220
Query: 2236 LGYG--LQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNL 2367
L +G LQ +S L I F DAD A D+ DR ST G +FLG NL
Sbjct: 1221 LHHGLHLQHNSNSHLNITGFCDADWASDVDDRHSTSGYCLFLGPNL 1266
Score = 207 bits (528), Expect(3) = 0.0
Identities = 102/196 (52%), Positives = 127/196 (64%), Gaps = 1/196 (0%)
Frame = +3
Query: 255 LDLIHSDVW-VSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQL 431
L+LIH+D+W + S +G +YY+ FI+++SRFTW+Y L +KSE F+ FK+ VE QL
Sbjct: 563 LELIHTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQL 622
Query: 432 QRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXXX 611
KIK VQSDWGGEYR+ + YL + GI HR+SCP+ H QNG A RKHRHIVE
Sbjct: 623 GHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQ 682
Query: 612 XXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRPF 791
+W AF T+ +LINRLPT L SPLE LF P Y+ L FGC C P LRPF
Sbjct: 683 ASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPF 742
Query: 792 NAHKLEPRSVRCVCFG 839
N HKL+ RS+ C G
Sbjct: 743 NHHKLQFRSIPCTFLG 758
Score = 84.3 bits (207), Expect(3) = 0.0
Identities = 39/81 (48%), Positives = 52/81 (64%)
Frame = +2
Query: 2471 SLLTELSFHSPRAPVIWCDNMGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFI 2650
SLL EL+ S PVIWCDN+ YL+ANPI H R KHI+I ++VRE V +++ +
Sbjct: 1267 SLLRELNISSSTTPVIWCDNLSTVYLSANPILHARTKHIKIDLYFVREKVLQKQIQIHHV 1326
Query: 2651 STQDQLANIFIKGLSFSRFAT 2713
+ DQLA++F K SRF T
Sbjct: 1327 PSSDQLADVFTKATPNSRFLT 1347
Score = 71.6 bits (174), Expect = 4e-09
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHD---DCTFTLSNVLHVPSITRNL--IHQFTKENNCFF 167
D V VGNG GL I HIG + T L +LHVP IT+NL + +F +N+ FF
Sbjct: 380 DEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLALKQLLHVPEITKNLLSVSKFAADNHVFF 439
Query: 168 EFHHDKFYVKDVITNKVLLTGPIRDGLYHLD 260
EFH +VKD T VL+ G ++ GLY D
Sbjct: 440 EFHPTSCFVKDPSTRTVLMHGQLKGGLYVFD 470
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 393 bits (1010), Expect(3) = 0.0
Identities = 224/539 (41%), Positives = 309/539 (57%), Gaps = 23/539 (4%)
Frame = +1
Query: 829 CV-LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQPEDSSNAAITSVT--VL 999
CV LGYS HKGY + LTG++ +S VVFDE FP+A+ S +A+ S+ ++
Sbjct: 732 CVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQNISSSPSKDASDESIIPXII 791
Query: 1000 PSSTSAT-----------------AIDPPTTIINEVXXXXXXXXXXXXXXXXXXXXXXXX 1128
SS +T + PT+ +
Sbjct: 792 VSSNPSTLSFHGSNHSMASPNLTSTLTHPTSP-TDTPTTRXSREPVLEAEVXLPAQQQVV 850
Query: 1129 XXXHSMTTRRKQGIFKPK-VYAYEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALLQ 1305
+TTR GI K K ++ + E PT +A KDP W +M +I AL +
Sbjct: 851 VPPPRVTTRSMSGITKRKPIFNLAASKISE----PTTLKQAIKDPNWAEAMHTEIAALHK 906
Query: 1306 NGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVV 1485
N TW LV NIIGCKW++++K DG+++RYKARLVA+G+NQ G+DY + F+PVV
Sbjct: 907 NQTWDLVDPPKDVNIIGCKWVYKLKYKXDGSVDRYKARLVARGFNQTFGLDYFETFSPVV 966
Query: 1486 KPTTIRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKS 1665
K TIR++++I L W++RQLD V+M QPPG+ P+ VCKLKK+
Sbjct: 967 KAATIRIVLTIXLSYRWELRQLD-------------VYMAQPPGFLHPNHPNKVCKLKKA 1013
Query: 1666 LYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXX 1845
LYGLKQ+PRAWF +LS L+ GF +S+TD+S+F L V++YVDDI+VTG
Sbjct: 1014 LYGLKQSPRAWFTKLSSALLSXGFNSSRTDSSMFVHFGRHSTLIVLVYVDDIIVTGSSPI 1073
Query: 1846 XXXXXXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYS 2025
FA++DLG+L +FLGI+ + + LHLSQ +YI++LL +T M SK +
Sbjct: 1074 LIQQLIHKLHSLFALRDLGQLSYFLGIEVTYDGGSLHLSQRKYITDLLQRTSMLDSKAAA 1133
Query: 2026 TP--FAPSTTSHPSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWT 2199
TP S + L + +YRSVVGALQYAT+TRPDIAF +NKACQ M PT HW+
Sbjct: 1134 TPGTVGLSLSQFDGDLMDDVTMYRSVVGALQYATLTRPDIAFSINKACQFMHRPTSTHWS 1193
Query: 2200 AVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISW 2376
+VKRILRYL+GT+ +GL + S+ IQ ++DAD DRRS+ G ++LG NL+SW
Sbjct: 1194 SVKRILRYLKGTITHGLLLQPSAHFTIQAYTDADWGAQPDDRRSSSGYLVYLGNNLVSW 1252
Score = 198 bits (503), Expect(3) = 0.0
Identities = 93/196 (47%), Positives = 127/196 (64%), Gaps = 1/196 (0%)
Frame = +3
Query: 255 LDLIHSDVW-VSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQL 431
L+L+++D+W + + S +G KY++ F++ +SR+TW+Y L K + L F FK VENQ
Sbjct: 541 LELVYTDIWGPASVTSTSGAKYFILFVDDYSRYTWLYLLQSKDQALPIFKXFKLQVENQF 600
Query: 432 QRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXXX 611
+ KIK +Q D GGE+R+ ++L GI HR SCP+ +QNGR RKHRH+VET
Sbjct: 601 EAKIKCLQXDNGGEFRSFMSFLQESGILHRFSCPYNSSQNGRVERKHRHVVETGLALLAH 660
Query: 612 XXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRPF 791
FWSYAF+TA FLINR+P+ L SP LF+ PDY FL FGC C P +RP+
Sbjct: 661 AGLPLKFWSYAFQTATFLINRMPSKVLXNASPYFALFKRNPDYKFLRVFGCLCYPFIRPY 720
Query: 792 NAHKLEPRSVRCVCFG 839
N HKL+ RS++CV G
Sbjct: 721 NNHKLQYRSLKCVFLG 736
Score = 107 bits (267), Expect(3) = 0.0
Identities = 54/119 (45%), Positives = 76/119 (63%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
+LG + SK K VSRSS E+EYR LA AT+E++W Q+LL EL P ++ DN
Sbjct: 1244 YLGNNLVSWTASKQKVVSRSSAESEYRGLAIATAEIIWTQALLRELCISITSIPTLYYDN 1303
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRF 2707
+ A Y+ NP+FH R KHIEI H++R+ V L++++I + DQ A+I K L+ SRF
Sbjct: 1304 ISAYYMAKNPVFHARTKHIEIDLHFIRDQVLHNKLQLQYIPSTDQPADILTKHLTSSRF 1362
Score = 67.4 bits (163), Expect = 7e-08
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHDDCTFTLSNVLHVPSITRNLIH--QFTKENNCFFEFH 176
D V +GNG L IS+ + L + +F L V HVP I+ NLI +F +NN EFH
Sbjct: 369 DKVTIGNGKHLTISNTXFTRLFSNPHSFQLKKVFHVPFISANLISVAKFCSDNNALIEFH 428
Query: 177 HDKFYVKDVITNKVLLTGPIRDGLYHLDLI 266
+ F++KD+ T +VL G + +GLY +I
Sbjct: 429 SNGFFLKDLHTKRVLAQGKLENGLYKFPVI 458
>emb|CAN65942.1| hypothetical protein VITISV_001716 [Vitis vinifera]
Length = 1319
Score = 426 bits (1096), Expect(2) = 0.0
Identities = 241/533 (45%), Positives = 324/533 (60%), Gaps = 17/533 (3%)
Frame = +1
Query: 835 LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAK---IFQPEDSSNAAITS--VTVL 999
LGYS +KG+ + LTG++ I+ VVFDE FP AK + +D+S +T +T
Sbjct: 678 LGYSLHNKGFLCLDFLTGRVYITPHVVFDEGQFPLAKTHPLSPTKDTSTDTLTPAIITSF 737
Query: 1000 P--------SSTSATAIDPPTTIINE-VXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMTT 1152
P S TS+ + P T+ ++ V MTT
Sbjct: 738 PFLTFCSNGSHTSSLSSSPSTSEASDSVSSPTVTPASSTLPEAIYEDQPPSPSPAPRMTT 797
Query: 1153 RRKQGIFKPK-VYAYEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALLQNGTWQLVQ 1329
R +GI K K + V + E P +A KDP W +MD +I AL +N TW LV+
Sbjct: 798 RLMRGITKKKTILNLSVVKISE----PYTLKQALKDPNWIQAMDLEIAALHRNQTWDLVE 853
Query: 1330 ADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTTIRMI 1509
S N+IGCKW++++K DG+IERYKA+LVAKGYNQ G+DY + F+PVVK TIR+I
Sbjct: 854 QPSEVNLIGCKWVYKLKHKPDGSIERYKAQLVAKGYNQTHGLDYFETFSPVVKAATIRII 913
Query: 1510 ISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGLKQAP 1689
++++L W+IRQLDV NAFL+G L+E+V+M QPPGY D P VC+LKK+LYGLKQAP
Sbjct: 914 LTMALSFQWEIRQLDVHNAFLNGELEEQVYMSQPPGYLDTTFPTKVCRLKKALYGLKQAP 973
Query: 1690 RAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXXXXXX 1869
RAWF RLS L+Q GF S+TD+S+F L V++YVDDI++TG
Sbjct: 974 RAWFQRLSSALIQWGFSNSRTDSSMFLHFGESTTLIVLVYVDDIIITGCSSTQISSLIAK 1033
Query: 1870 XXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA--PS 2043
F ++DLG+L +FLGI+ S + ++LSQ +Y+S++LH+T+M +KP TP A +
Sbjct: 1034 LDSIFTLRDLGQLSYFLGIEVSYHEGSMNLSQTKYVSDMLHRTEMFDTKPAKTPGAVGKN 1093
Query: 2044 TTSHPSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWTAVKRILRY 2223
+ + YRSVVGALQY TITR DIAF VNKACQ MQ PT AHW +VKRILRY
Sbjct: 1094 LSKFDGDPMDEVTQYRSVVGALQYLTITRLDIAFAVNKACQFMQQPTSAHWLSVKRILRY 1153
Query: 2224 LQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISWFS 2382
LQGT+ GL S++L I+ FSDA+ + DRRS+ G ++LG NL+SW S
Sbjct: 1154 LQGTMQDGLLLSPSTNLTIKGFSDANWGAQLDDRRSSNGYLVYLGGNLVSWSS 1206
Score = 244 bits (622), Expect(2) = 0.0
Identities = 135/338 (39%), Positives = 179/338 (52%), Gaps = 52/338 (15%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHDDCTFTLSNVLHVPSITRNLIH--QFTKENNCFFEFH 176
D V +GNG L+IS+ G+ L D +F L V HVP I+ NLI +F +NN EF
Sbjct: 349 DKVTIGNGKHLSISNTGSHRLLXDSRSFHLKKVFHVPFISANLISVAKFCSDNNALIEFX 408
Query: 177 HDKFYVKDVITNKVLLTGPIRDGLYH---------------------------------- 254
+ F+VKD+ T KVL G + +GLY
Sbjct: 409 SNSFFVKDLHTKKVLAQGKLENGLYRFPVLNSKKSCNVSFEKNQNTVCSTVCSSCQLAKS 468
Query: 255 ---------------LDLIHSDVW-VSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEV 386
L+L+H+D+W + + S +G +Y++ F+N +S++TW YPL K +
Sbjct: 469 HRLPTHLSLSCASKPLELVHTDLWGPASVKSTSGARYFILFLNDYSQYTWFYPLQTKDQA 528
Query: 387 LDTFIKFKTHVENQLQRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGR 566
L F KFK VENQ KIK +QSD GGE+R+ T+L GI HR SCP+ AQNGR R
Sbjct: 529 LPAFKKFKLQVENQFDAKIKCLQSDNGGEFRSFKTFLQQTGIFHRFSCPYNSAQNGRVER 588
Query: 567 KHRHIVETCXXXXXXXXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNF 746
KHRH+VET FW YAF+TA FLINR+P+ L SP TLFQ P+Y
Sbjct: 589 KHRHVVETGLALLAHASLPMEFWQYAFQTATFLINRMPSKVLQNNSPYFTLFQKVPNYKS 648
Query: 747 LHTFGCACSPCLRPFNAHKLEPRSVRCVCFGLQPATQG 860
L FGC C P +RP N+HKL+ RSV+ + G +G
Sbjct: 649 LRVFGCLCYPFIRPCNSHKLQYRSVQSLFLGYSLHNKG 686
Score = 107 bits (268), Expect = 5e-20
Identities = 52/119 (43%), Positives = 77/119 (64%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
+LG S +K K VS SS E+EY LA AT+E++W+Q+LL EL P P++W DN
Sbjct: 1196 YLGGNLVSWSSTKQKVVSHSSAESEYCGLALATAEIIWMQALLQELCVPIPAIPLLWYDN 1255
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRF 2707
+ A ++ NP+FH R KHIEI H++R+ V +++ F+ T+DQ A++ K L+ SRF
Sbjct: 1256 ISAYHMAKNPVFHARTKHIEIDLHFIRDQVIRGKIQLHFVPTEDQPADLLTKHLTSSRF 1314
>gb|KHN30958.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1237
Score = 352 bits (904), Expect(3) = e-170
Identities = 219/554 (39%), Positives = 286/554 (51%), Gaps = 47/554 (8%)
Frame = +1
Query: 820 SGVCV-LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQ-------------- 954
S +CV +GYS Y +P TG+I SR V F E FP+ +
Sbjct: 611 SAMCVFVGYSADQHAYLCLDPTTGRIYTSRHVKFVESEFPFNSLVTHASPSPEQQTGPLQ 670
Query: 955 ---------PEDSSNAAIT-SVTVLP----SSTSAT----------------AIDPPTTI 1044
PEDSS A + S+T P SST T + PP TI
Sbjct: 671 LSILQPMNPPEDSSPAPSSPSITNSPYMAQSSTEPTNPTQSPPPTSQSSPQLSAPPPQTI 730
Query: 1045 INEVXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMTTRRKQGIFKPKVYAYEVQTVCEDII 1224
+N + TR K I KP + + I
Sbjct: 731 VNP--------------------------NGGGIITRSKNNIIKP-IQKLNLHVQASSPI 763
Query: 1225 VPTCYTEACKDPKWRASMDEKITALLQNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIE 1404
P T+A +DP WR++M + AL N TW LV S N++GCKW+FRIKRN DG+I+
Sbjct: 764 EPNTITQALRDPDWRSAMQAEFDALHHNNTWDLVSRSSDQNLVGCKWVFRIKRNPDGSID 823
Query: 1405 RYKARLVAKGYNQVEGIDYQDRFNPVVKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHL 1584
RYKARLVAKG++Q S+ +GW IRQLDV NAFL G L
Sbjct: 824 RYKARLVAKGFHQR------------------------SVRQGWPIRQLDVNNAFLQGTL 859
Query: 1585 QEEVFMVQPPGYADKLLPHHVCKLKKSLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSL 1764
+EEVFM+QPPG+ +K P HVC+LKK+LYGLKQAPRAW+ L FL+ GF S D SL
Sbjct: 860 KEEVFMIQPPGFVNKNFPDHVCRLKKALYGLKQAPRAWYTELRVFLLSLGFVNSTADASL 919
Query: 1765 FFRVTCFEDLYVIIYVDDILVTGXXXXXXXXXXXXXXREFAIKDLGELHFFLGIQASRNS 1944
F LY+++YVDDI++TG F++KDLG L +FLG++ ++
Sbjct: 920 FIYQKPEVTLYLLVYVDDIIMTGNSSAELSKLIATLAARFSLKDLGCLSYFLGVEVIPSA 979
Query: 1945 AGLHLSQEQYISNLLHKTKMTFSKPYSTPFAPST--TSHPSPLFEYHVLYRSVVGALQYA 2118
AG+ LSQ +YI +LLHK+ MT +KP STP + S L YR++VG+LQY
Sbjct: 980 AGMFLSQRKYIIDLLHKSGMTNTKPASTPLSASVQLLKDSGDLLPSPNEYRTLVGSLQYL 1039
Query: 2119 TITRPDIAFVVNKACQHMQSPTEAHWTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDA 2298
++TRPDIAF NK Q MQ+P AHW+A+KR+LRYL G+ G+ ++ L +SDA
Sbjct: 1040 SLTRPDIAFSTNKLAQFMQNPRTAHWSALKRVLRYLAGSCDKGVFISATAPLTFHAYSDA 1099
Query: 2299 D*AGDITDRRSTGG 2340
D AGD D ST G
Sbjct: 1100 DWAGDKDDYVSTTG 1113
Score = 174 bits (442), Expect(3) = e-170
Identities = 86/197 (43%), Positives = 115/197 (58%)
Frame = +3
Query: 249 YHLDLIHSDVWVSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQ 428
Y L++I SDVW SP+ SI+G +YY F++ F+R+ W+YP+ KS+V F KFK+ VEN
Sbjct: 422 YPLEIIFSDVWTSPILSIDGLRYYCMFVDHFTRYIWLYPMKRKSDVQTIFPKFKSLVENF 481
Query: 429 LQRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXX 608
KIK + +D GGEY + +L N GI H + PH NG + R++RHI ET
Sbjct: 482 YHHKIKILYTDNGGEYIGLRPFLLNHGISHHTTPPHTPEHNGISERRNRHIAETGLSLLH 541
Query: 609 XXXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRP 788
+W +A TA +LINRLPT L SP L PDY+ L FGC C P ++P
Sbjct: 542 HSGLPLTYWPHAMTTAAYLINRLPTPILGYQSPYSKLLNISPDYHKLKCFGCLCFPWIKP 601
Query: 789 FNAHKLEPRSVRCVCFG 839
+ HKL P+S CV G
Sbjct: 602 YANHKLAPKSAMCVFVG 618
Score = 125 bits (313), Expect(3) = e-170
Identities = 64/108 (59%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Frame = +2
Query: 2387 KHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRA-PVIWCDNMGATYLTANPI 2563
K ++V+RSSTEAEY+ALAD SE++W+ SL TEL H P A PVI+CDN+GAT L+ANP+
Sbjct: 1118 KQRSVARSSTEAEYKALADTASELLWVLSLFTELG-HMPTANPVIYCDNLGATNLSANPV 1176
Query: 2564 FHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRF 2707
FH+RMKHI +A+H+VRE V V F+ST DQLA+I K L RF
Sbjct: 1177 FHSRMKHIALAYHFVREHVQHGKFRVSFVSTNDQLADILTKPLLRPRF 1224
>gb|KHN45997.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1235
Score = 352 bits (904), Expect(3) = e-170
Identities = 219/554 (39%), Positives = 286/554 (51%), Gaps = 47/554 (8%)
Frame = +1
Query: 820 SGVCV-LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQ-------------- 954
S +CV +GYS Y +P TG+I SR V F E FP+ +
Sbjct: 609 SAMCVFVGYSADQHAYLCLDPTTGRIYTSRHVKFVESEFPFNSLVTHASPSPEQQTGPLQ 668
Query: 955 ---------PEDSSNAAIT-SVTVLP----SSTSAT----------------AIDPPTTI 1044
PEDSS A + S+T P SST T + PP TI
Sbjct: 669 LSILQPMNPPEDSSPAPSSPSITNSPYMAQSSTEPTNPTQSPPPTSQSSPQLSAPPPQTI 728
Query: 1045 INEVXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMTTRRKQGIFKPKVYAYEVQTVCEDII 1224
+N + TR K I KP + + I
Sbjct: 729 VNP--------------------------NGGGIITRSKNNIIKP-IQKLNLHVQASSPI 761
Query: 1225 VPTCYTEACKDPKWRASMDEKITALLQNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIE 1404
P T+A +DP WR++M + AL N TW LV S N++GCKW+FRIKRN DG+I+
Sbjct: 762 EPNTITQALRDPDWRSAMQAEFDALHHNNTWDLVSRSSDQNLVGCKWVFRIKRNPDGSID 821
Query: 1405 RYKARLVAKGYNQVEGIDYQDRFNPVVKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHL 1584
RYKARLVAKG++Q S+ +GW IRQLDV NAFL G L
Sbjct: 822 RYKARLVAKGFHQR------------------------SVRQGWPIRQLDVNNAFLQGTL 857
Query: 1585 QEEVFMVQPPGYADKLLPHHVCKLKKSLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSL 1764
+EEVFM+QPPG+ +K P HVC+LKK+LYGLKQAPRAW+ L FL+ GF S D SL
Sbjct: 858 KEEVFMIQPPGFVNKNFPDHVCRLKKALYGLKQAPRAWYTELRVFLLSLGFVNSTADASL 917
Query: 1765 FFRVTCFEDLYVIIYVDDILVTGXXXXXXXXXXXXXXREFAIKDLGELHFFLGIQASRNS 1944
F LY+++YVDDI++TG F++KDLG L +FLG++ ++
Sbjct: 918 FIYQKPEVTLYLLVYVDDIIMTGNSSAELSKLIATLAARFSLKDLGCLSYFLGVEVIPSA 977
Query: 1945 AGLHLSQEQYISNLLHKTKMTFSKPYSTPFAPST--TSHPSPLFEYHVLYRSVVGALQYA 2118
AG+ LSQ +YI +LLHK+ MT +KP STP + S L YR++VG+LQY
Sbjct: 978 AGMFLSQRKYIIDLLHKSGMTNTKPASTPLSASVQLLKDSGDLLPSPNEYRTLVGSLQYL 1037
Query: 2119 TITRPDIAFVVNKACQHMQSPTEAHWTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDA 2298
++TRPDIAF NK Q MQ+P AHW+A+KR+LRYL G+ G+ ++ L +SDA
Sbjct: 1038 SLTRPDIAFSTNKLAQFMQNPRTAHWSALKRVLRYLAGSCDKGVFISATAPLTFHAYSDA 1097
Query: 2299 D*AGDITDRRSTGG 2340
D AGD D ST G
Sbjct: 1098 DWAGDKDDYVSTTG 1111
Score = 174 bits (442), Expect(3) = e-170
Identities = 86/197 (43%), Positives = 115/197 (58%)
Frame = +3
Query: 249 YHLDLIHSDVWVSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQ 428
Y L++I SDVW SP+ SI+G +YY F++ F+R+ W+YP+ KS+V F KFK+ VEN
Sbjct: 420 YPLEIIFSDVWTSPILSIDGLRYYCMFVDHFTRYIWLYPMKRKSDVQTIFPKFKSLVENF 479
Query: 429 LQRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXX 608
KIK + +D GGEY + +L N GI H + PH NG + R++RHI ET
Sbjct: 480 YHHKIKILYTDNGGEYIGLRPFLLNHGISHHTTPPHTPEHNGISERRNRHIAETGLSLLH 539
Query: 609 XXXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRP 788
+W +A TA +LINRLPT L SP L PDY+ L FGC C P ++P
Sbjct: 540 HSGLPLTYWPHAMTTAAYLINRLPTPILGYQSPYSKLLNISPDYHKLKCFGCLCFPWIKP 599
Query: 789 FNAHKLEPRSVRCVCFG 839
+ HKL P+S CV G
Sbjct: 600 YANHKLAPKSAMCVFVG 616
Score = 125 bits (313), Expect(3) = e-170
Identities = 64/108 (59%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Frame = +2
Query: 2387 KHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRA-PVIWCDNMGATYLTANPI 2563
K ++V+RSSTEAEY+ALAD SE++W+ SL TEL H P A PVI+CDN+GAT L+ANP+
Sbjct: 1116 KQRSVARSSTEAEYKALADTASELLWVLSLFTELG-HMPTANPVIYCDNLGATNLSANPV 1174
Query: 2564 FHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRF 2707
FH+RMKHI +A+H+VRE V V F+ST DQLA+I K L RF
Sbjct: 1175 FHSRMKHIALAYHFVREHVQHGKFRVSFVSTDDQLADILTKPLLRPRF 1222
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 425 bits (1093), Expect(2) = e-149
Identities = 222/417 (53%), Positives = 279/417 (66%), Gaps = 8/417 (1%)
Frame = +1
Query: 1150 TRRKQGIFKPKVYAYEVQTVCEDIIV----PTCYTEACKDPKWRASMDEKITALLQNGTW 1317
TR + G+ K KVY PT EA KD W+ +MD + AL++N TW
Sbjct: 915 TRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTW 974
Query: 1318 QLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTT 1497
LV G NIIGCKW+++IKR DGT++RYKARLVAKG+ Q GIDY+D F+PVVK T
Sbjct: 975 HLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 1034
Query: 1498 IRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGL 1677
IR+I+S+++ KGW +RQLDV+NAFLHG+L+EEV+M+QPPG+ D PHHVCKL K+LYGL
Sbjct: 1035 IRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGL 1094
Query: 1678 KQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXX 1857
KQAPRAWF RLS+ LM GF+ SK DTSLFF ++V++YVDDI+V
Sbjct: 1095 KQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAA 1154
Query: 1858 XXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA 2037
EFA+KDLGELH+FLGI+ S+ G+ L+Q++Y ++LL K M KP +TP +
Sbjct: 1155 LLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLS 1214
Query: 2038 PS--TTSHPSPLF--EYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWTAV 2205
S + H L E YRSVVGALQY T+TRPDIAF VNK CQ + +PT HW AV
Sbjct: 1215 VSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAV 1274
Query: 2206 KRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISW 2376
KRILRYL+ GL+ S S + FSDAD AG + DRRSTGG IFLG+NL+SW
Sbjct: 1275 KRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSW 1331
Score = 135 bits (341), Expect(2) = e-149
Identities = 64/115 (55%), Positives = 86/115 (74%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TVSRSSTE+EY+A+A+AT+E++W+Q+LL EL SP+A IWCDN
Sbjct: 1323 FLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDN 1382
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLS 2695
+GA YL+ANP+FH R KHIE+ +H+VRE V+ LE+ F+ST DQ+A+ F K LS
Sbjct: 1383 LGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLS 1437
Score = 214 bits (544), Expect = 5e-52
Identities = 101/202 (50%), Positives = 131/202 (64%)
Frame = +3
Query: 255 LDLIHSDVWVSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQLQ 434
L+L+ SDVW S+ KYYVSFI+ FS+FTW+Y + +KS+V D F +F+ VE Q
Sbjct: 509 LELVFSDVWGPAPESVGRKKYYVSFIDDFSKFTWIYLIQHKSQVFDKFQEFQVMVERQFD 568
Query: 435 RKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXXXX 614
RKI +Q+DWGGEY++++++ GI H VSCPH H QNG A RKHRHIVE
Sbjct: 569 RKILAMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHA 628
Query: 615 XXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRPFN 794
FW AF+ A +LINR+P+ +H +SPLE LF+ PDY+ L FGCAC P LRP+N
Sbjct: 629 SMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYN 688
Query: 795 AHKLEPRSVRCVCFGLQPATQG 860
HKL+ RS RCV G +G
Sbjct: 689 NHKLQFRSKRCVFLGFSTMHKG 710
Score = 64.7 bits (156), Expect = 4e-07
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHDDC-TFTLSNVLHVPSITRNLI--HQFTKENNCFFEF 173
+ + +G+G++ISHIG +I+ + + L NVL+VP +NL+ H+ +N+ F E
Sbjct: 347 EQIHTASGAGMDISHIGHAIVHNPNSRNIHLRNVLYVPQAKKNLVSVHRLVNDNSAFLEL 406
Query: 174 HHDKFYVKDVITNKVLLTGPIRDGLYHL 257
H D F++KD IT K LL G LY L
Sbjct: 407 HRDYFFLKDQITRKTLLKGRSWRRLYPL 434
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 416 bits (1069), Expect(2) = e-144
Identities = 224/480 (46%), Positives = 297/480 (61%), Gaps = 7/480 (1%)
Frame = +1
Query: 958 EDSSNAAITSVTVLPSSTSATAIDPPTTIINEVXXXXXXXXXXXXXXXXXXXXXXXXXXX 1137
+ S++ + S + P+S S+ A P T+ N
Sbjct: 668 DSSTHESSISASASPASQSSVATAPEATLPNP-------QQHQQALRSSTPEGEASRPVT 720
Query: 1138 HSMTTRRKQGIFKPKVYAYEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALLQNGTW 1317
H RK+ I+ + Y T + P +A D W+ +MD K TALL N TW
Sbjct: 721 HLQKGIRKEKIYTDRTVKYGCLTTTGE---PRDLHDALHDTNWKHAMDAKFTALLHNKTW 777
Query: 1318 QLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTT 1497
LV G NII KW+++IKR DG+++RYKARLVAKG+ Q GIDY+D F+PVVK T
Sbjct: 778 HLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 837
Query: 1498 IRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGL 1677
IR+I+SI++ +GW +RQLDV+NAFLHG L+EEV+M QPPGY DK+ P +VCKL K+LYGL
Sbjct: 838 IRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGL 897
Query: 1678 KQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXX 1857
KQAPRAW+ +LSQ L GFQ SK DTSLFF ++V++YVDDI+V
Sbjct: 898 KQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQDAVPA 957
Query: 1858 XXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA 2037
++FA+KDLG+LH+FLGI+ ++ S+G+ L+QE+Y+++LL + MT KP STP
Sbjct: 958 LLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPL- 1016
Query: 2038 PSTTSHPSPLFEYHVL-------YRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHW 2196
+TS L E +L YRSVVGALQY T+TRPDI F VNK CQ + +PT HW
Sbjct: 1017 --STSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHW 1074
Query: 2197 TAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISW 2376
A+KRILRYL+ GL+ S S+ + +SDAD AG+I DRRSTGG +FLG NL+SW
Sbjct: 1075 AAMKRILRYLKQCTKLGLKISKSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSW 1134
Score = 127 bits (318), Expect(2) = e-144
Identities = 63/115 (54%), Positives = 82/115 (71%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TV RSSTE+EY+ALA+AT+E++WIQ+LL ELS SP +WCDN
Sbjct: 1126 FLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDN 1185
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLS 2695
+GA YL++NP+FH R KHIE+ +H+VRE + LEV FI T DQ+A+ F K LS
Sbjct: 1186 LGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALS 1240
Score = 207 bits (527), Expect = 4e-50
Identities = 102/204 (50%), Positives = 126/204 (61%)
Frame = +3
Query: 270 SDVWVSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQLQRKIKY 449
+DVW + G KYYVSFI++FSRFTW+Y L YKSEV F +F+ VE RKI
Sbjct: 349 ADVWGPAPVAGGGKKYYVSFIDAFSRFTWIYFLKYKSEVFQKFQEFQCLVERMFNRKIIS 408
Query: 450 VQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXXXXXXXXX 629
+Q+DWGGEY+ ++T+ + GI H VSCPH H QNG A RKHRHIVE
Sbjct: 409 MQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLK 468
Query: 630 FWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRPFNAHKLE 809
FW A+++ +LINR+PT L SPLE LF+ PDY L TFGCAC P LRP+N+HK+
Sbjct: 469 FWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMH 528
Query: 810 PRSVRCVCFGLQPATQGV*IFQSS 881
RS RC G P +G SS
Sbjct: 529 FRSKRCTFLGYSPLHKGFRCLDSS 552
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 426 bits (1094), Expect(2) = e-144
Identities = 222/417 (53%), Positives = 279/417 (66%), Gaps = 8/417 (1%)
Frame = +1
Query: 1150 TRRKQGIFKPKVYAYEVQTVCEDIIV----PTCYTEACKDPKWRASMDEKITALLQNGTW 1317
TR + G+ K KVY PT EA KD W+ +MD + AL++N TW
Sbjct: 637 TRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTW 696
Query: 1318 QLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTT 1497
LV G NIIGCKW+++IKR DGT++RYKARLVAKG+ Q GIDY+D F+PVVK T
Sbjct: 697 HLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 756
Query: 1498 IRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGL 1677
IR+I+S+++ KGW +RQLDV+NAFLHG+L+EEV+M+QPPG+ D PHHVCKL K+LYGL
Sbjct: 757 IRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGL 816
Query: 1678 KQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXX 1857
KQAPRAWF RLS+ LM GF+ SK DTSLFF ++V++YVDDI+V
Sbjct: 817 KQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAA 876
Query: 1858 XXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA 2037
EFA+KDLGELH+FLGI+ S+ G+ L+Q++Y ++LL K M KP +TP +
Sbjct: 877 LLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLS 936
Query: 2038 PS--TTSHPSPLF--EYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWTAV 2205
S + H L E YRSVVGALQY T+TRPDIAF VNK CQ + +PT HW AV
Sbjct: 937 VSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAV 996
Query: 2206 KRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISW 2376
KRILRYL+ GL+ S S + FSDAD AG + DRRSTGG IFLG+NL+SW
Sbjct: 997 KRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSW 1053
Score = 115 bits (289), Expect(2) = e-144
Identities = 53/103 (51%), Positives = 75/103 (72%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TVSRSSTE+EY+A+A+AT+E++W+Q+LL EL SP+A IWCDN
Sbjct: 1045 FLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDN 1104
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQ 2659
+GA YL+ANP+FH R KHIE+ +H+VRE + + + + F +Q
Sbjct: 1105 LGAKYLSANPVFHARTKHIEVDYHFVRERLLSRFINLGFGCSQ 1147
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 424 bits (1090), Expect(2) = e-142
Identities = 215/387 (55%), Positives = 270/387 (69%), Gaps = 4/387 (1%)
Frame = +1
Query: 1228 PTCYTEACKDPKWRASMDEKITALLQNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIER 1407
PT EA KD W+ +MD + AL++N TW LV G NIIGCKW+++IKR DGT++R
Sbjct: 938 PTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDR 997
Query: 1408 YKARLVAKGYNQVEGIDYQDRFNPVVKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHLQ 1587
YKARLVAKG+ Q GIDY+D F+PVVK TIR+I+S+++ KGW +RQLDV+NAFLHG+L+
Sbjct: 998 YKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLE 1057
Query: 1588 EEVFMVQPPGYADKLLPHHVCKLKKSLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSLF 1767
EEV+M+QPPG+ D PHHVCKL K+LYGLKQAPRAWF RLS+ LM GF+ SK DTSLF
Sbjct: 1058 EEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLF 1117
Query: 1768 FRVTCFEDLYVIIYVDDILVTGXXXXXXXXXXXXXXREFAIKDLGELHFFLGIQASRNSA 1947
F ++V++YVDDI+V EFA+KDLGELH+FLGI+ S+
Sbjct: 1118 FLNKGDITMFVLVYVDDIIVASSSERATAALLQDLKGEFALKDLGELHYFLGIEVSKVQN 1177
Query: 1948 GLHLSQEQYISNLLHKTKMTFSKPYSTPFAPS--TTSHPSPLF--EYHVLYRSVVGALQY 2115
G+ L+Q++Y ++LL K M KP +TP + S + H L E YRSVVGALQY
Sbjct: 1178 GIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQY 1237
Query: 2116 ATITRPDIAFVVNKACQHMQSPTEAHWTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSD 2295
T+TRPDIAF VNK CQ + +PT HW AVKRILRYL+ GL+ S S + FSD
Sbjct: 1238 LTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGFSD 1297
Query: 2296 AD*AGDITDRRSTGGMTIFLGTNLISW 2376
AD AG + DRRSTGG IFLG+NL+SW
Sbjct: 1298 ADWAGCLDDRRSTGGFAIFLGSNLVSW 1324
Score = 112 bits (280), Expect(2) = e-142
Identities = 50/88 (56%), Positives = 67/88 (76%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TVSRSS E+EY+A+A+AT+E++W+Q+LL EL SP+A IWCDN
Sbjct: 1316 FLGSNLVSWNARKQATVSRSSIESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDN 1375
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRE 2614
+GA YL+ANP+FH R KHIE+ +H+VRE
Sbjct: 1376 LGAKYLSANPVFHARTKHIEVDYHFVRE 1403
Score = 219 bits (558), Expect = 1e-53
Identities = 122/295 (41%), Positives = 167/295 (56%), Gaps = 9/295 (3%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHDDC-TFTLSNVLHVPSITRNLI--HQFTKENNCFFEF 173
+ + +G+G++ISHIG +I+ + + L NVL+VP +NL+ H+ +N+ F E
Sbjct: 463 EQIHTASGAGMDISHIGHAIVHNPNSRNIHLRNVLYVPQAKKNLVSVHRLVNDNSAFLEL 522
Query: 174 HHDKFYVKDVITNKVLLTGPIRDGLYHLDLIHSDVWVSPLCSINGFKYYVSFINSFSRFT 353
H D F++KD IT K LL G LY L HS + + Y + S R
Sbjct: 523 HRDYFFLKDQITRKTLLKGRSWRRLYPLP--HSSLKQA----------YSAIKLSLDR-- 568
Query: 354 WVYPLAY------KSEVLDTFIKFKTHVENQLQRKIKYVQSDWGGEYRNVSTYLDNCGIG 515
W + L + KS+V D F +F+ VE Q RKI +Q+DWGGEY++++++ GI
Sbjct: 569 WHHRLGHPSITTHKSQVFDKFQEFQVMVERQFDRKILAMQTDWGGEYQSLNSFFSKIGIV 628
Query: 516 HRVSCPHAHAQNGRAGRKHRHIVETCXXXXXXXXXXXXFWSYAFETANFLINRLPTLTLH 695
H VSCPH H QNG A RKHRHIVE FW AF+ A +LINR+P+ +H
Sbjct: 629 HHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLINRVPSRVIH 688
Query: 696 QLSPLETLFQTPPDYNFLHTFGCACSPCLRPFNAHKLEPRSVRCVCFGLQPATQG 860
+SPLE LF+ PDY+ L FGCAC P LRP+N HKL+ RS RCV G +G
Sbjct: 689 NISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKG 743
>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1180
Score = 406 bits (1043), Expect(2) = e-141
Identities = 214/420 (50%), Positives = 275/420 (65%), Gaps = 11/420 (2%)
Frame = +1
Query: 1150 TRRKQGIFKPKVYAYEVQTVCEDIIV----PTCYTEACKDPKWRASMDEKITALLQNGTW 1317
TR ++GI K K+Y + TV + P EA D W+ +MD + TALL N TW
Sbjct: 538 TRLQKGIRKEKIYTDD--TVKYGFLTTTGEPRDLAEALHDTNWKHAMDAEFTALLHNKTW 595
Query: 1318 QLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTT 1497
LV G N++ CKW+++IKR DG+++RYK RLVAKG Q GIDY+D F+PVVK T
Sbjct: 596 HLVPPQKGKNVMDCKWVYKIKRKQDGSLDRYKVRLVAKGIKQRYGIDYEDTFSPVVKAAT 655
Query: 1498 IRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGL 1677
IR+++SI++ +GW +RQLDV NAFLHG L+EEV+M QPPGY DK P +CKL K+LYGL
Sbjct: 656 IRLVLSIAVSRGWTLRQLDVHNAFLHGILEEEVYMKQPPGYEDKANPGCICKLDKALYGL 715
Query: 1678 KQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXX 1857
KQAPRAW+ RLSQ L Q GFQ SK DTSLFF ++V+IYVDDI+V
Sbjct: 716 KQAPRAWYARLSQKLQQLGFQGSKADTSLFFYNKQGLTIFVLIYVDDIIVASSRQDAVLT 775
Query: 1858 XXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA 2037
+EFA+KDLG+LH+FLGI+ ++ S G+ L+QE+Y ++LL + M KP S A
Sbjct: 776 LLQDLQKEFALKDLGDLHYFLGIEVNKISNGIILTQEKYANDLLKRVGMIDCKPVS---A 832
Query: 2038 PSTTSHPSPLFEYHVL-------YRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHW 2196
+TS L E +L YRSVVGALQY T+TRPDIAF VNK CQ + +PT HW
Sbjct: 833 SLSTSEKLTLHEGDLLGLNDASNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTIHW 892
Query: 2197 TAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISW 2376
VKRILRYL+ GL+ S S+ + +SD D AG++ DRRST G +FLG NL+SW
Sbjct: 893 ATVKRILRYLKQCTKLGLKISKSKSMLVSGYSDTDWAGNVDDRRSTRGFAVFLGDNLVSW 952
Score = 126 bits (316), Expect(2) = e-141
Identities = 62/115 (53%), Positives = 81/115 (70%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TVSRSSTE+EY+ LA+AT+E++WIQ+LL EL SP +WCDN
Sbjct: 944 FLGDNLVSWNARKQATVSRSSTESEYKVLANATAEIMWIQTLLAELGVSSPLMARLWCDN 1003
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLS 2695
+GA YL++NP+FH R KHIE+ +H+VRE V LEV F+ T DQ+A+ F K LS
Sbjct: 1004 LGAKYLSSNPVFHARTKHIEVDYHFVRERVQRRLLEVDFVPTGDQVADGFTKALS 1058
>gb|EMT21953.1| ABC transporter C family member 10 [Aegilops tauschii]
Length = 3041
Score = 398 bits (1022), Expect(2) = e-140
Identities = 209/418 (50%), Positives = 271/418 (64%), Gaps = 9/418 (2%)
Frame = +1
Query: 1150 TRRKQGIFKPKVYAYEVQ-----TVCEDIIVPTCYTEACKDPKWRASMDEKITALLQNGT 1314
TR ++G+ +P Y + T E P EA D +W+ +M+E+ L +N T
Sbjct: 2248 TRLQKGVIQPVNYKQITKFGLACTTGE----PGTLDEALGDTRWKKAMEEEYMTLQKNKT 2303
Query: 1315 WQLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPT 1494
W LV G N+I CKW++RIKR DGTI+RYKARLVAKG+ Q GIDY+D F+PVVK
Sbjct: 2304 WHLVSPRRGKNLIDCKWVYRIKRKSDGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAA 2363
Query: 1495 TIRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYG 1674
TIR+++SI++ +GW +RQLDV+NAFLHG L+EEV+M QPPG+ +K P HVCKL +LYG
Sbjct: 2364 TIRLVLSIAVSRGWSLRQLDVQNAFLHGVLKEEVYMKQPPGFENKDKPFHVCKLDNALYG 2423
Query: 1675 LKQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXX 1854
LKQAPRAW+ LSQ L GF SK+DTSLF ++V+IYVDDI+VT
Sbjct: 2424 LKQAPRAWYSHLSQKLQALGFVPSKSDTSLFIYNKLKTSIFVLIYVDDIIVTSSSNEAVT 2483
Query: 1855 XXXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPF 2034
EFA+KDLG+LHFFLGI+ + GLHLSQE+Y ++L+ + + K TP
Sbjct: 2484 GSLKDLSAEFALKDLGDLHFFLGIEVKKTEDGLHLSQEKYAADLVRRAGLQGCKASPTPL 2543
Query: 2035 APS--TTSHPSPLF--EYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWTA 2202
+ + + L E YRS+VGALQY T+TRPDI+F VNK CQ + +PT H TA
Sbjct: 2544 SSTEKLSLEEGDLLGQEDSTRYRSLVGALQYLTLTRPDISFAVNKVCQFLHAPTTVHLTA 2603
Query: 2203 VKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISW 2376
KRI+RY++ T+ GL F SSS + FSD+D AG I DRRSTGG +F G NLISW
Sbjct: 2604 AKRIVRYVKNTMSLGLTFTKSSSTLVSAFSDSDWAGCIDDRRSTGGFAVFFGPNLISW 2661
Score = 130 bits (326), Expect(2) = e-140
Identities = 58/108 (53%), Positives = 81/108 (75%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
F G + K TVSRSSTEAEY+ALA+AT+E++W+QS+L EL + P +WCDN
Sbjct: 2653 FFGPNLISWCVKKQATVSRSSTEAEYKALANATAEIIWVQSMLRELGVKHTKTPCLWCDN 2712
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLAN 2674
+GATYL+ANP+FH R KHI+I FH+VRE VA L++RF+ ++DQ+++
Sbjct: 2713 LGATYLSANPVFHARTKHIKIDFHFVRERVARRQLDIRFVHSRDQVSS 2760
>emb|CAN75478.1| hypothetical protein VITISV_020209 [Vitis vinifera]
Length = 1074
Score = 417 bits (1072), Expect(2) = e-139
Identities = 239/569 (42%), Positives = 323/569 (56%), Gaps = 24/569 (4%)
Frame = +1
Query: 748 YIHLVVPVLHVSDHLMLIN*N--QGLSGVCV-LGYSQLHKGYRSFNPLTGKIIISRDVVF 918
Y H V HL +N N Q S C+ LGY+ HKGY NP T ++ ISR VVF
Sbjct: 371 YFHFKVFGCLCYPHLKHLNSNKFQPRSTPCIFLGYAPSHKGYLCLNPTTNRVYISRHVVF 430
Query: 919 DEHVFPYAKIFQPEDSS-NAAITSVTVLP----------SSTSATAIDPPTT------II 1047
E FP+ + P S + +T LP SS AT +P T +
Sbjct: 431 AETTFPFQALSPPSQQSYHIPVTPAFPLPPSPILFPPTTSSPLATPSEPAPTSPPANSLS 490
Query: 1048 NEVXXXXXXXXXXXXXXXXXXXXXXXXXXXHSMTTRRKQGIFKPKVYAYEVQTVCEDIIV 1227
H M TR K GI K K Y + I
Sbjct: 491 LPPLIHVPFVDEAAETPTTSLQDSTAPIPGHPMITRSKSGICKKKTYLTSLT------IE 544
Query: 1228 PTCYTEACKDPKWRASMDEKITALLQNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIER 1407
P + +DP W+ +M+++ ALL+N TW LV S II CKW+F++K +G+I+R
Sbjct: 545 PRTVKQTLQDPNWKLAMEQEYQALLKNQTWSLVPPPSNAKIIRCKWVFKLKHKPNGSIDR 604
Query: 1408 YKARLVAKGYNQVEGIDYQDRFNPVVKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHLQ 1587
YKARLVA+G++Q GID+ + F+PVVKP TIR+++SI++ W I+QLDV NAFL+G LQ
Sbjct: 605 YKARLVAQGFHQTYGIDFFETFSPVVKPCTIRLVLSIAVSSNWPIKQLDVHNAFLNGDLQ 664
Query: 1588 EEVFMVQPPGYADKLLPHHVCKLKKSLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSLF 1767
E+VFM+QPPG+ D P HVC+L+K+LYGLKQ PRAWF +LS FL+Q GFQ S+ + SLF
Sbjct: 665 EQVFMMQPPGFEDSSCPTHVCRLQKALYGLKQGPRAWFHKLSSFLLQIGFQCSRANASLF 724
Query: 1768 FRVTCFEDLYVIIYVDDILVTGXXXXXXXXXXXXXXREFAIKDLGELHFFLGIQASRNSA 1947
+ + + + ++IYVDDIL+TG FA++DLG++ +FLGI+ +R S
Sbjct: 725 YFHSASDIIILLIYVDDILITGSNPSRVHQIISQLSSHFALRDLGDISYFLGIKVTRLSH 784
Query: 1948 GLHLSQEQYISNLLHKTKMTFSKPYSTPFAPSTTSHPSPLFEYHVL----YRSVVGALQY 2115
LHL+Q+ YI LL + + +K STP A + VL YRS+VGALQY
Sbjct: 785 ALHLNQQHYIHQLLERANLHEAKSASTPGALGKLLSAADGEPLSVLDATHYRSLVGALQY 844
Query: 2116 ATITRPDIAFVVNKACQHMQSPTEAHWTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSD 2295
T+TRP+I+F VN+ACQ+M PT +H A KRILRYL+GT +G+ S SL +Q ++D
Sbjct: 845 ITLTRPEISFAVNRACQYMARPTTSHLQAAKRILRYLKGTATHGISIHASPSLSLQGYTD 904
Query: 2296 AD*AGDITDRRSTGGMTIFLGTNLISWFS 2382
D A D+RST G +F TNLISW S
Sbjct: 905 VDWASCPDDKRSTSGFCLFFCTNLISWSS 933
Score = 109 bits (272), Expect(2) = e-139
Identities = 54/111 (48%), Positives = 73/111 (65%)
Frame = +2
Query: 2378 SLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDNMGATYLTAN 2557
S +K + VSRSS E+EY ALA +EV W+Q LL EL P+IWCDN+ AT L AN
Sbjct: 932 SSTKQRVVSRSSAESEYWALALLVAEVSWVQFLLKELCIPQQDTPLIWCDNISATALAAN 991
Query: 2558 PIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRFA 2710
+FH R KHIEI FH+VR+ V L ++++ + DQLAN+F K + +F+
Sbjct: 992 SVFHARSKHIEIDFHFVRDKVLHKELLIQYVPSTDQLANVFTKHVPSCQFS 1042
Score = 89.0 bits (219), Expect = 2e-14
Identities = 44/109 (40%), Positives = 57/109 (52%)
Frame = +3
Query: 534 HAHAQNGRAGRKHRHIVETCXXXXXXXXXXXXFWSYAFETANFLINRLPTLTLHQLSPLE 713
H QNGR K RH+VET FW YAF T LIN +P+ L+ SP
Sbjct: 303 HVVEQNGRVECKMRHVVETGLTLLYTATLPSKFWPYAFTTTVTLINCMPSPLLNYSSPFS 362
Query: 714 TLFQTPPDYNFLHTFGCACSPCLRPFNAHKLEPRSVRCVCFGLQPATQG 860
L++ PPDY FGC C P L+ N++K +PRS C+ G P+ +G
Sbjct: 363 LLYKHPPDYFHFKVFGCLCYPHLKHLNSNKFQPRSTPCIFLGYAPSHKG 411
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 395 bits (1014), Expect(2) = e-138
Identities = 208/421 (49%), Positives = 277/421 (65%), Gaps = 12/421 (2%)
Frame = +1
Query: 1150 TRRKQGIFKPKVYAYEVQTVCEDIIVPTCYTEACKDP----KWRASMDEKITALLQNGTW 1317
TR + GI K KVY TV ++ T E +D W+ +MD + AL++N TW
Sbjct: 895 TRLQSGIRKEKVYTDG--TVKWGMLTSTGEPENLQDALQNNNWKCAMDAEYMALIKNNTW 952
Query: 1318 QLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTT 1497
LV G N+I CKW+++IKR DG+++RYKARLVAKG+ Q GIDY+D F+PVVK T
Sbjct: 953 HLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 1012
Query: 1498 IRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGL 1677
IR+I+SI++ +GW +RQLDV+NAFLHG L+EEV+M QPPGY + P +VCKL K+LYGL
Sbjct: 1013 IRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKLDKALYGL 1072
Query: 1678 KQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXX 1857
KQAPRAW+ RLS L GF+ SK DTSLFF ++++IYVDDI+V
Sbjct: 1073 KQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSSRKEAVSA 1132
Query: 1858 XXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA 2037
+EFA+KDLG+LH+FLGI+ ++ G+ +SQE+Y S+LL + M+ K +TP +
Sbjct: 1133 LLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRVNMSDCKSVATPLS 1192
Query: 2038 PS--------TTSHPSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAH 2193
S T P+ + YRS+VGALQY T+TR DIAF VNK CQ + +PT H
Sbjct: 1193 ASEKLIAGKGTILGPNDATQ----YRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEH 1248
Query: 2194 WTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLIS 2373
W AVKRILRY++ G GL+ SSS+ + +SDAD AG + DRRSTGG ++LG NL+S
Sbjct: 1249 WAAVKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLGDNLVS 1308
Query: 2374 W 2376
W
Sbjct: 1309 W 1309
Score = 129 bits (323), Expect(2) = e-138
Identities = 62/114 (54%), Positives = 83/114 (72%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
+LG + K TVSRSSTEAEY+ALA+AT+E++W+Q+LL EL+ SP +WCDN
Sbjct: 1301 YLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDN 1360
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGL 2692
MGA YL+ NP+FH R KHIE+ +H+VRE VA L+V ++ST DQ+A+ F K L
Sbjct: 1361 MGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKAL 1414
Score = 209 bits (532), Expect = 1e-50
Identities = 102/204 (50%), Positives = 126/204 (61%)
Frame = +3
Query: 249 YHLDLIHSDVWVSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQ 428
Y L+L+ SDVW S+ KYYVSFI+ +S+FTW+Y L YKSEV D F +F++ VE
Sbjct: 511 YPLELVFSDVWGPAPQSVGNNKYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERL 570
Query: 429 LQRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXX 608
RKI +Q+DWGGEY+ + ++ + GI H VSCPH H QNG A RKHRHIVE
Sbjct: 571 FNRKIVAMQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLA 630
Query: 609 XXXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRP 788
FW AF +A +LINR P+ LH +SPLE L PDYN L FGCAC P LRP
Sbjct: 631 YSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRP 690
Query: 789 FNAHKLEPRSVRCVCFGLQPATQG 860
+N HKL+ RS C G +G
Sbjct: 691 YNKHKLQFRSTTCTFLGYSTLHKG 714
Score = 65.5 bits (158), Expect = 3e-07
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHDDCTFTLSNVLHVPSITRNLI--HQFTKENNCFFEFH 176
D V +G+G+ ISHIG S++K L +VL+VP +NL+ ++ T +N F E +
Sbjct: 346 DQVHTASGAGMEISHIGNSVVKTPSRNLHLKDVLYVPKANKNLVSAYKLTSDNLAFIELY 405
Query: 177 HDKFYVKDVITNKVLLTGPIRDGLYHL 257
F++KD+ + LL G GLY L
Sbjct: 406 RKFFFIKDLAMRRTLLRGRCHKGLYAL 432
>ref|YP_514636.1| hypothetical protein OrsaiPp07 (mitochondrion) [Oryza sativa Indica
Group] gi|289065044|ref|YP_003433855.1| hypothetical
protein OrrupM_p18 (mitochondrion) [Oryza rufipogon]
gi|74100111|gb|AAZ99275.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|74100166|gb|AAZ99329.1| hypothetical protein
(mitochondrion) [Oryza sativa Japonica Group]
gi|74100220|gb|AAZ99382.1| hypothetical protein
(mitochondrion) [Oryza sativa Japonica Group]
gi|285026126|dbj|BAI67959.1| hypothetical protein
(mitochondrion) [Oryza rufipogon]
gi|285026155|dbj|BAI67987.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|353685219|gb|AER12982.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|353685288|gb|AER13050.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|374277649|gb|AEZ03755.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|374277659|gb|AEZ03764.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|528540457|dbj|BAN67511.1| hypothetical protein
(mitochondrion) [Oryza rufipogon]
gi|528540460|dbj|BAN67513.1| hypothetical protein
(mitochondrion) [Oryza rufipogon]
Length = 490
Score = 397 bits (1021), Expect(2) = e-136
Identities = 203/371 (54%), Positives = 256/371 (69%), Gaps = 4/371 (1%)
Frame = +1
Query: 1276 MDEKITALLQNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGI 1455
MDE+ AL++N TW LV A G N+I CKW+++IKR DGTI+RYKARLVAKG+ Q GI
Sbjct: 1 MDEEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGI 60
Query: 1456 DYQDRFNPVVKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLL 1635
DY++ F+PVVK TIR+I+S+++ GW +RQLDV+NAFLHG L+E+V+M QPPGY DK
Sbjct: 61 DYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSK 120
Query: 1636 PHHVCKLKKSLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVD 1815
+VCKL K+LYGLKQAPRAWF RLS L GFQ SK D SLFF ++V+IYVD
Sbjct: 121 LDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKGTISIFVLIYVD 180
Query: 1816 DILVTGXXXXXXXXXXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHK 1995
DI+V EFA+KDLG LH+FLGI+ ++ G+ L+QE+Y ++LL +
Sbjct: 181 DIIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKR 240
Query: 1996 TKMTFSKPYSTPFAPS---TTSHPSPL-FEYHVLYRSVVGALQYATITRPDIAFVVNKAC 2163
M K +TP + + PL E YRS+VGALQY T+TRPDIAF VNK C
Sbjct: 241 VGMHGCKEINTPLSTTDKLLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVC 300
Query: 2164 QHMQSPTEAHWTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGM 2343
Q++ +PT HWTAVKRILRYL+G+LG GL+ S S + FSDAD AG DR+STGG
Sbjct: 301 QYLHAPTSLHWTAVKRILRYLKGSLGLGLRICKSDSTLVSAFSDADWAGCPDDRKSTGGF 360
Query: 2344 TIFLGTNLISW 2376
+FLG NLISW
Sbjct: 361 AVFLGANLISW 371
Score = 120 bits (301), Expect(2) = e-136
Identities = 58/110 (52%), Positives = 80/110 (72%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TVSRSSTEAEY+ALA+AT+E++ +Q+LL E PRA +WCDN
Sbjct: 363 FLGANLISWNAWKQATVSRSSTEAEYKALANATAEIISVQTLLKERGIAQPRAACLWCDN 422
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIF 2680
+GAT L+ANP+FH R KHIE+ +H+VRE V+ L++RF+ + DQ+A+ F
Sbjct: 423 IGATSLSANPVFHARTKHIEVDYHFVRERVSQGLLDIRFVPSGDQVADGF 472
>ref|YP_002000554.1| orf490 (mitochondrion) [Oryza sativa Japonica Group]
gi|23495377|dbj|BAC19858.1| orf490 (mitochondrion) [Oryza
sativa Japonica Group]
Length = 490
Score = 394 bits (1013), Expect(2) = e-136
Identities = 201/371 (54%), Positives = 255/371 (68%), Gaps = 4/371 (1%)
Frame = +1
Query: 1276 MDEKITALLQNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGI 1455
MDE+ AL++N TW LV A G N+I CKW+++IKR DGTI+RYKARLVAKG+ Q GI
Sbjct: 1 MDEEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGI 60
Query: 1456 DYQDRFNPVVKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLL 1635
DY++ F+PVVK TIR+I+S+++ GW +RQLDV+NAFLHG L+E+V+M QPPGY DK
Sbjct: 61 DYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSK 120
Query: 1636 PHHVCKLKKSLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVD 1815
+VCKL K+LYGL+ APRAWF RLS L GFQ SK D SLFF ++V+IYVD
Sbjct: 121 LDYVCKLDKALYGLRHAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKGTISIFVLIYVD 180
Query: 1816 DILVTGXXXXXXXXXXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHK 1995
DI+V EFA+KDLG LH+FLGI+ ++ G+ L+QE+Y ++LL +
Sbjct: 181 DIIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKR 240
Query: 1996 TKMTFSKPYSTPFAPS---TTSHPSPL-FEYHVLYRSVVGALQYATITRPDIAFVVNKAC 2163
M K +TP + + PL E YRS+VGALQY T+TRPDIAF VNK C
Sbjct: 241 VGMHGCKEINTPLSTTDKLLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVC 300
Query: 2164 QHMQSPTEAHWTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGM 2343
Q++ +PT HWTAVKRILRYL+G+LG GL+ S S + FSDAD AG DR+STGG
Sbjct: 301 QYLHAPTSLHWTAVKRILRYLKGSLGLGLRICKSDSTLVSAFSDADWAGCPDDRKSTGGF 360
Query: 2344 TIFLGTNLISW 2376
+FLG NLISW
Sbjct: 361 AVFLGANLISW 371
Score = 120 bits (301), Expect(2) = e-136
Identities = 58/110 (52%), Positives = 80/110 (72%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TVSRSSTEAEY+ALA+AT+E++ +Q+LL E PRA +WCDN
Sbjct: 363 FLGANLISWNAWKQATVSRSSTEAEYKALANATAEIISVQTLLKERGIAQPRAACLWCDN 422
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIF 2680
+GAT L+ANP+FH R KHIE+ +H+VRE V+ L++RF+ + DQ+A+ F
Sbjct: 423 IGATSLSANPVFHARTKHIEVDYHFVRERVSQGLLDIRFVPSGDQVADGF 472
>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
Length = 1803
Score = 377 bits (967), Expect(2) = e-135
Identities = 211/538 (39%), Positives = 292/538 (54%), Gaps = 18/538 (3%)
Frame = +1
Query: 829 CV-LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQPEDSSNA---------- 975
CV +GY H+GYR ++ ++ ++ SR V F E VFP+ P S+
Sbjct: 747 CVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSPRPSAPPPPDHGDDTIV 806
Query: 976 -----AITSVTVLPSSTSATAIDPPTTIINEVXXXXXXXXXXXXXXXXXXXXXXXXXXXH 1140
A VT + ++ + A PP+ + H
Sbjct: 807 LLPAPAQHVVTPVGTAPAHDAASPPSPASSTPSSAAPAHDVAPPPSPETSSPASASPPRH 866
Query: 1141 SMTTRRKQGIFKPKVYAYEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALLQNGTWQ 1320
+MTTR + GI KP Y + P+ A +DP WRA+M + ALL N TW
Sbjct: 867 AMTTRARAGISKPNP-RYAMTATSTLSPTPSSVRVALRDPNWRAAMQAEFDALLANRTWT 925
Query: 1321 LVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTTI 1500
LV G II KW+F+ K + DG++++YKAR V +G+NQ G+D+ + F+PVVKP TI
Sbjct: 926 LVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFNQRPGVDFGETFSPVVKPATI 985
Query: 1501 RMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGLK 1680
R ++++ K W QLDV NAFLHGHLQE V QP G+ D P VC L +SLYGL+
Sbjct: 986 RTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRSLYGLR 1045
Query: 1681 QAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXXX 1860
QAPRAWF R + GF S+ D SLF + Y+++YVDD++++
Sbjct: 1046 QAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRI 1105
Query: 1861 XXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTP--F 2034
EF +KD+G L +FLGI+ R + G LSQ +Y +++L + M K +TP
Sbjct: 1106 IDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATDVLERAGMANCKAVATPADA 1165
Query: 2035 APSTTSHPSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWTAVKRI 2214
P +S PLF+ YRS+ GALQY T+TRPDIA+ V + C HM +P EAH T +KRI
Sbjct: 1166 KPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRI 1225
Query: 2215 LRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISWFSQQ 2388
LRY++GT +GL + S+S + FSDAD AG RRST G IFLG +LISW S++
Sbjct: 1226 LRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKR 1283
Score = 137 bits (345), Expect(2) = e-135
Identities = 74/200 (37%), Positives = 103/200 (51%), Gaps = 2/200 (1%)
Frame = +3
Query: 246 LYHLDLIHSDVWVSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVEN 425
L+ L+H+DVW SP+ S +G+KYYV F++ F+ + W +P+ KSEV T F +
Sbjct: 552 LFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHT 611
Query: 426 QLQRKIKYVQSDWGGEYRNVS--TYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXX 599
Q + +Q+D G EY + + + L G R+SCP++ QNG+A R R I +
Sbjct: 612 QFGLPVLALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRT 671
Query: 600 XXXXXXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPC 779
FW+ A +TA LINR P L P + L PP Y+ L FGC C P
Sbjct: 672 MLVHSAAPLSFWAEALQTAMHLINRRPCRATGSLKPYQLLLGAPPTYDHLRVFGCLCYPN 731
Query: 780 LRPFNAHKLEPRSVRCVCFG 839
HKL PRS+ CV G
Sbjct: 732 TIATAPHKLSPRSLACVFIG 751
Score = 106 bits (265), Expect = 1e-19
Identities = 54/119 (45%), Positives = 74/119 (62%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + S + TVSRSS EAEYR +A+A +E W++ LL EL P+A + +CDN
Sbjct: 1271 FLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDN 1330
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRF 2707
+ + Y++ NP+ H R KHIE+ H+VRE VA L V I + Q A++F KGL S F
Sbjct: 1331 ISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPSSMF 1389
>ref|XP_009359358.1| PREDICTED: uncharacterized protein LOC103949948 [Pyrus x
bretschneideri]
Length = 1243
Score = 393 bits (1010), Expect(2) = e-134
Identities = 202/420 (48%), Positives = 277/420 (65%), Gaps = 3/420 (0%)
Frame = +1
Query: 1138 HSMTTRRKQGIFKPKVYAYEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALLQNGTW 1317
H +TTR K GI KP TV + + PTC+++A K +WR +M ++ AL + GTW
Sbjct: 498 HVITTRSKSGIHKPNPKYVMHLTVDKFPVEPTCFSQAIKSQEWRNAMVQEFNALQKCGTW 557
Query: 1318 QLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPTT 1497
LV S N++ KW+F++KR DG++ER+KARLVA G++Q G+DY + F+PVVK +T
Sbjct: 558 TLVPYHSKMNLLPNKWVFKVKRRADGSVERHKARLVANGFHQQAGVDYGETFSPVVKHST 617
Query: 1498 IRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYGL 1677
IR+++S+++ W +RQLDV+NAFLHG L+E+V+M QP G+ D+ P HVCKL++S+YGL
Sbjct: 618 IRLVLSLAVSHRWPVRQLDVQNAFLHGFLKEDVYMRQPRGFVDQQFPSHVCKLQRSIYGL 677
Query: 1678 KQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXXX 1857
KQAPRAWF R S FL++ GFQ S D SLF L ++IYVDDIL+TG
Sbjct: 678 KQAPRAWFQRFSDFLLELGFQESSCDYSLFVFRQQGVYLILLIYVDDILITGNSPHQISS 737
Query: 1858 XXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPFA 2037
F++KDLG LH+FLG++ N +HL Q +Y +LL +T T +KP STP
Sbjct: 738 LITRLGTLFSMKDLGPLHYFLGVEVKYNGTAMHLCQSKYALDLLSRTNFTEAKPISTP-V 796
Query: 2038 PS---TTSHPSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAHWTAVK 2208
PS +++ ++ +YRSVVGALQY TITRPD+++ VN+ CQ M SP HW AVK
Sbjct: 797 PSGHKLSAYVGESYDKPDVYRSVVGALQYITITRPDLSYAVNQVCQFMHSPKTTHWMAVK 856
Query: 2209 RILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLISWFSQQ 2388
RILRYL+ T +GL +K S QI FSDAD AG+ STGG I+ G+NL+SW S++
Sbjct: 857 RILRYLKATHTHGLLYK-PGSTQISAFSDADYAGNPNSLHSTGGFCIYHGSNLVSWSSKK 915
Score = 116 bits (290), Expect(2) = e-134
Identities = 59/110 (53%), Positives = 74/110 (67%)
Frame = +2
Query: 2378 SLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDNMGATYLTAN 2557
S K KTVS SS EAEYR LA +E+ W +SL +L H R P IWCDN+ + L +N
Sbjct: 912 SSKKQKTVSWSSAEAEYRQLAYTAAELSWFRSLFKDLHLHLDR-PQIWCDNISSIALASN 970
Query: 2558 PIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSRF 2707
P+FH R KH+E+ +HYVRE V L V +I +QDQLA++F KGLS SRF
Sbjct: 971 PVFHARTKHLEVDYHYVREKVVRGQLLVNYICSQDQLADLFTKGLSSSRF 1020
>emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]
Length = 1427
Score = 380 bits (977), Expect(2) = e-132
Identities = 205/439 (46%), Positives = 271/439 (61%), Gaps = 22/439 (5%)
Frame = +1
Query: 1138 HSMTTRRKQGIFKPKVYA------YEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITAL 1299
H + TR + I PK + + + + PT ++A KDPKW A MD+++ AL
Sbjct: 861 HRIVTRSQNNIHCPKQFPDFKTSFHVTKHPLPXSLEPTTASQALKDPKWCAXMDDELAAL 920
Query: 1300 LQNGTWQLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNP 1479
+N TW LV S +NI+GCKW+FRIKRN DG+I RYKARLVAKG++Q G+DY D F+P
Sbjct: 921 ARNCTWVLVPPPSNHNIVGCKWVFRIKRNPDGSISRYKARLVAKGFHQRPGVDYHDTFSP 980
Query: 1480 VVKPTTIRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLK 1659
VVKPTTIR+++SI+L W I QLDV N FLHG L E+V+M QPPGY D+ P HVC+L+
Sbjct: 981 VVKPTTIRVVLSIALSNXWXISQLDVNNXFLHGTLTEDVYMAQPPGYVDQANPTHVCRLQ 1040
Query: 1660 KSLYGLKQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXX 1839
K+LYGLKQAPRAW++ L FL+ GF SK DTSLF +Y ++YVDD+LVTG
Sbjct: 1041 KALYGLKQAPRAWYMELRTFLLTFGFINSKXDTSLFIYQXRSATIYFLVYVDDLLVTGNC 1100
Query: 1840 XXXXXXXXXXXXREFAIKDLGELHFFLGIQ-ASRNSAGLHLSQEQYISNLLHKTKMTFSK 2016
F++KDLG L +FLG++ A S G+ LSQ QY+ +LL K + K
Sbjct: 1101 SQSIRRFIDALAHRFSLKDLGPLSYFLGVEGAISTSDGMFLSQHQYVRDLLAKFNLEGIK 1160
Query: 2017 PYSTPFAPS---TTSHPSPLFEYHVLYRSVVGALQYATITRPDIAFVVNKACQHMQSPTE 2187
STP + + T + SP +RS++G LQY +TR DIAF VNK Q M +PT+
Sbjct: 1161 DSSTPMSSTGHLTLNDGSPPXN-ATQFRSLIGGLQYLQLTRLDIAFAVNKLAQFMHAPTQ 1219
Query: 2188 AHWTAVKRILRYLQGTLGYGLQFKCSSSLQIQ------------DFSDAD*AGDITDRRS 2331
HWTA KR+LRYL+ T+ GL F+ L +Q +SDAD AGD +S
Sbjct: 1220 THWTAAKRLLRYLKHTIHLGLTFRRXQPLHLQAYSDVTPPLDLRAYSDADWAGDPDSYKS 1279
Query: 2332 TGGMTIFLGTNLISWFSQQ 2388
T +FLG + ISW S++
Sbjct: 1280 TTAFVLFLGGHPISWCSKK 1298
Score = 120 bits (302), Expect(2) = e-132
Identities = 57/106 (53%), Positives = 77/106 (72%)
Frame = +2
Query: 2387 KHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDNMGATYLTANPIF 2566
K KTV+RSSTEAEYRA+A +EV W+ LL+EL ++P I+CDN+ ATYL NP+F
Sbjct: 1298 KQKTVARSSTEAEYRAVASTAAEVTWVSHLLSELGITLQQSPTIYCDNLSATYLCVNPLF 1357
Query: 2567 HNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGLSFSR 2704
H+RMKH+ + +H+VRE V SL+V ++TQ QLA++ K LS SR
Sbjct: 1358 HSRMKHVALDYHFVREKVXDGSLKVSHVNTQSQLADVLTKPLSKSR 1403
Score = 181 bits (458), Expect(2) = 2e-48
Identities = 89/196 (45%), Positives = 125/196 (63%), Gaps = 1/196 (0%)
Frame = +3
Query: 255 LDLIHSDVW-VSPLCSINGFKYYVSFINSFSRFTWVYPLAYKSEVLDTFIKFKTHVENQL 431
LDL++SDVW SP+ SI+GF+YY+ FI+ F+++ W++P+AYKS+V F K+K+ VE
Sbjct: 509 LDLVYSDVWGPSPIESIDGFRYYLIFIDYFTKYVWLFPMAYKSDVYTIFPKYKSMVEKYF 568
Query: 432 QRKIKYVQSDWGGEYRNVSTYLDNCGIGHRVSCPHAHAQNGRAGRKHRHIVETCXXXXXX 611
+ + +D G EY+++ +Y + GI H+VS P+ G A RKHRH+VET
Sbjct: 569 NASLVTLYTDGGTEYKSLKSYFISQGIQHQVSPPYTPEHVGSAERKHRHVVETGLAMLHK 628
Query: 612 XXXXXXFWSYAFETANFLINRLPTLTLHQLSPLETLFQTPPDYNFLHTFGCACSPCLRPF 791
+WSYAF A +LINRLPT L SP E+LFQ P+Y+ L FGC C P +RP+
Sbjct: 629 ASLPLKYWSYAFLAAAYLINRLPTPILKHQSPFESLFQHMPNYDKLRAFGCLCFPWMRPY 688
Query: 792 NAHKLEPRSVRCVCFG 839
+ HKL+ RS CV G
Sbjct: 689 SDHKLDKRSKPCVFLG 704
Score = 42.4 bits (98), Expect(2) = 2e-48
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 829 CV-LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQPEDSSNAAITSVTVLPS 1005
CV LGYS H Y+ + + ++ ISR V F EH FP+A P D A T + P
Sbjct: 700 CVFLGYSNTHNAYKCLDLSSNRVYISRHVQFIEHKFPFASNTTPTDLBQAISTWSSCSP- 758
Query: 1006 STSATAIDPPTTII 1047
+ AI P ++
Sbjct: 759 --ALAAIQPSFFVV 770
Score = 63.9 bits (154), Expect = 8e-07
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 DHVRVGNGSGLNISHIGTSILKHDDCTFTLSNVLHVPSITRNLI--HQFTKENNCFFEFH 176
D + +G+GSGL I+H G+S L +F LSNVL PSI +NLI +F K NN EF
Sbjct: 338 DDILLGDGSGLEITHTGSSKLPATSKSFCLSNVLCXPSIKQNLISVSKFCKTNNTSIEFF 397
Query: 177 HDKFYVKDVITNKVLLTGPIRDGLY 251
F +KD+ T L G +D +Y
Sbjct: 398 PSSFVIKDLKTGARLTQGRSKDDVY 422
>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
gi|31430072|gb|AAP52036.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1058
Score = 369 bits (947), Expect(2) = e-130
Identities = 195/421 (46%), Positives = 258/421 (61%), Gaps = 12/421 (2%)
Frame = +1
Query: 1150 TRRKQGIFKPKVYA-----YEVQTVCEDIIVPTCYTEACKDPKWRASMDEKITALLQNGT 1314
TR + GI KPK Y Y E+ P EA K+ W+ +MD++ AL+ N T
Sbjct: 546 TRSRHGIHKPKKYTDGTIRYAALVSTEE---PGNLHEALKNKHWKLAMDKEFEALVHNKT 602
Query: 1315 WQLVQADSGYNIIGCKWIFRIKRNVDGTIERYKARLVAKGYNQVEGIDYQDRFNPVVKPT 1494
W LV G NII CKW++++KR D +I+RYKARLVAKG+ Q GIDY+D F+P+VK
Sbjct: 603 WHLVPPQKGVNIIDCKWVYKVKRKADESIDRYKARLVAKGFKQRYGIDYEDTFSPIVKAA 662
Query: 1495 TIRMIISISLYKGWQIRQLDVKNAFLHGHLQEEVFMVQPPGYADKLLPHHVCKLKKSLYG 1674
TIR+++S+++ +GW +RQLDV+NAFLHG L+E+V+M QPPGY + P ++CKL K+LYG
Sbjct: 663 TIRLVLSLAVSQGWSLRQLDVQNAFLHGFLEEDVYMRQPPGYEEPKAPQYLCKLDKALYG 722
Query: 1675 LKQAPRAWFVRLSQFLMQHGFQASKTDTSLFFRVTCFEDLYVIIYVDDILVTGXXXXXXX 1854
LKQAPRAW+ RL IYVDDI+V
Sbjct: 723 LKQAPRAWYSRL-------------------------------IYVDDIIVASSSAQAVT 751
Query: 1855 XXXXXXXREFAIKDLGELHFFLGIQASRNSAGLHLSQEQYISNLLHKTKMTFSKPYSTPF 2034
+EFA+KDLGELH+FLGI+ + S + L+QE+Y S ++ + M K TP
Sbjct: 752 ALLRSLEKEFALKDLGELHYFLGIEVKKASGNILLNQERYASEIVKRVSMENCKSVGTPL 811
Query: 2035 APSTTSHPSPLFEYHVL-------YRSVVGALQYATITRPDIAFVVNKACQHMQSPTEAH 2193
+T +E L YRSVVGALQY T+TRPDI+F VNK CQ +Q+PT H
Sbjct: 812 ---STVEKLSAYEGEKLGEKDATQYRSVVGALQYLTLTRPDISFSVNKVCQFLQNPTTVH 868
Query: 2194 WTAVKRILRYLQGTLGYGLQFKCSSSLQIQDFSDAD*AGDITDRRSTGGMTIFLGTNLIS 2373
W VKRILRY++GTLG GL+ + SSS + +SDAD A + D+RSTGG +FLG+NLIS
Sbjct: 869 WATVKRILRYVKGTLGLGLKVEKSSSNIVSAYSDADWADCLDDKRSTGGFAVFLGSNLIS 928
Query: 2374 W 2376
W
Sbjct: 929 W 929
Score = 128 bits (321), Expect(2) = e-130
Identities = 61/114 (53%), Positives = 81/114 (71%)
Frame = +2
Query: 2351 FLGLT*FPGSLSKHKTVSRSSTEAEYRALADATSEVVWIQSLLTELSFHSPRAPVIWCDN 2530
FLG + K TVSRSSTEAEY+ALA+AT+E++W++ LL EL P +WCDN
Sbjct: 921 FLGSNLISWNARKQATVSRSSTEAEYKALANATAEIMWVRKLLEELGISHPGPSQLWCDN 980
Query: 2531 MGATYLTANPIFHNRMKHIEIAFHYVRELVAALSLEVRFISTQDQLANIFIKGL 2692
+GATYL+ NP+FH R KHIEI +H+VRE VA L ++F+ +QDQ+A+ F K L
Sbjct: 981 IGATYLSVNPVFHARTKHIEIDYHFVREQVAQKQLALQFVPSQDQVADGFTKAL 1034
Score = 55.5 bits (132), Expect(2) = 8e-07
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +1
Query: 835 LGYSQLHKGYRSFNPLTGKIIISRDVVFDEHVFPYAKIFQPEDSSNAAITSVTVLPSSTS 1014
LGYS LHKG++ + TG++ ISRDVVFDE ++P+A + P + + + P
Sbjct: 331 LGYSTLHKGFKCLDISTGRVYISRDVVFDEQIYPFANL-HPNAGARLRSEVLVLPPDLLP 389
Query: 1015 ATAIDPPTTIINE 1053
T D I+N+
Sbjct: 390 PTQFDQGGAIVND 402
Score = 28.1 bits (61), Expect(2) = 8e-07
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 765 ACSPCLRPFNAHKLEPRSVRCVCFGLQPATQG 860
A P LRP+N KLE RS +C G +G
Sbjct: 308 ARQPNLRPYNHRKLEFRSKQCAFLGYSTLHKG 339