BLASTX nr result
ID: Papaver30_contig00011170
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver30_contig00011170
(691 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 59 8e-14
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 59 2e-13
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 58 2e-13
ref|YP_002000578.1| ribosomal protein S4 (mitochondrion) [Oryza ... 56 4e-12
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911... 55 6e-12
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana] 55 6e-12
ref|YP_008999563.1| ribosomal protein S4 (mitochondrion) (mitoch... 60 6e-12
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 55 1e-11
ref|XP_010314945.1| PREDICTED: ribosomal protein S4, mitochondri... 56 2e-11
ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259... 51 2e-11
ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum] 56 2e-11
gb|AJM70227.1| ribosomal protein S4 (mitochondrion) [Nicotiana t... 56 2e-11
ref|YP_009121977.1| ribosomal protein S4 (mitochondrion) [Hyoscy... 56 2e-11
ref|YP_009049648.1| ribosomal protein S4 (mitochondrion) [Capsic... 56 2e-11
ref|YP_009041168.1| ribosomal protein subunit S4 (mitochondrion)... 56 2e-11
gb|AHX81382.1| ribosomal protein S4 (mitochondrion) [Couepia gui... 61 2e-11
gb|AHX81376.1| ribosomal protein S4 (mitochondrion) [Hirtella ra... 61 2e-11
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc... 57 8e-11
ref|YP_008964100.1| truncated ribosomal protein S4 (mitochondrio... 44 1e-10
gb|AGL75402.1| ribosomal protein S4 (mitochondrion) [Utricularia... 55 2e-10
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 58.5 bits (140), Expect(3) = 8e-14
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 15/79 (18%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--AEIRRSHFCSVL 640
F +IPQARQLISHRRVCVNN + + ISFQ N+V + EI+RS + +L
Sbjct: 106 FCETIPQARQLISHRRVCVNNGMVNITHFKLSHGDIISFQENDVRTRGEEIKRSFYIEIL 165
Query: 641 --NIMGQVQIQLWRRTKVE 691
I+G+ WRRTK E
Sbjct: 166 VEKIIGKFLDHPWRRTKTE 184
Score = 36.6 bits (83), Expect(3) = 8e-14
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLLLGNVW++EL+I
Sbjct: 9 RFKTCRLLLGNVWNRELTI 27
Score = 28.9 bits (63), Expect(3) = 8e-14
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQL T RKLSLFY H+G RE T+ ++ FLL++++
Sbjct: 52 NLNSYIQLQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNLET 95
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 59.3 bits (142), Expect(3) = 2e-13
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 18/82 (21%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSAEIRRSHFCSVL 640
F +IPQARQLISHRRVCVNN + S ISFQ N+ + EIRRS + +L
Sbjct: 111 FCETIPQARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEIRRSFYIEIL 170
Query: 641 --NIMGQV---QIQLWRRTKVE 691
I+G+ +++WRRTK E
Sbjct: 171 VEKIIGKFLDHPVRMWRRTKTE 192
Score = 34.3 bits (77), Expect(3) = 2e-13
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 14 RFKTCRLLSGNVWNRELTI 32
Score = 29.3 bits (64), Expect(3) = 2e-13
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 57 NLNSYIQLQTTRKLSLFYGDLPITEMHRGTER-----TSYIPFLLNLET 100
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gi|372450274|ref|YP_005090457.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197313|gb|AET62910.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197320|gb|AET62917.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
Length = 358
Score = 58.2 bits (139), Expect(3) = 2e-13
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 18/82 (21%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSAEIRRSHFCSVL 640
F +IPQARQLISHRRVCVNN + S ISFQ N+ + EIRR+ + +L
Sbjct: 111 FCETIPQARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEIRRAFYIEIL 170
Query: 641 --NIMGQV---QIQLWRRTKVE 691
I+G+ +++WRRTK E
Sbjct: 171 VDKIIGKFLDHPVRMWRRTKTE 192
Score = 34.3 bits (77), Expect(3) = 2e-13
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 14 RFKTCRLLSGNVWNRELTI 32
Score = 30.0 bits (66), Expect(3) = 2e-13
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 57 NMNSYIQLQTTRKLSLFYGDLPITEMHRGTER-----TSYIPFLLNLET 100
>ref|YP_002000578.1| ribosomal protein S4 (mitochondrion) [Oryza sativa Japonica Group]
gi|92700092|dbj|BAC19883.2| Ribosomal protein S4
(mitochondrion) [Oryza sativa Japonica Group]
Length = 352
Score = 55.8 bits (133), Expect(3) = 4e-12
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 16/80 (20%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--AEIRRSHFCSVL 640
F ++PQARQLISHRRVC+NN + + ISFQ N+ + EIRRS + +L
Sbjct: 102 FCDTLPQARQLISHRRVCLNNGLVTITHLKVSHGDLISFQENDARTRGEEIRRSFYIDIL 161
Query: 641 --NIMGQ-VQIQLWRRTKVE 691
I+G+ + +++WR+TK E
Sbjct: 162 VGKIIGKLLPVRIWRKTKTE 181
Score = 37.0 bits (84), Expect(3) = 4e-12
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLLLGNVW++ELS+
Sbjct: 5 RFKTCRLLLGNVWNRELSL 23
Score = 25.4 bits (54), Expect(3) = 4e-12
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFYH----KGIHKRE*TTSEFVLFLLDVDS 491
N +S+I+L T RKLSL+Y + +H+ TS ++ FLL+ ++
Sbjct: 48 NLNSNIKLQTTRKLSLYYGDLPIREMHRGRERTS-YIPFLLNQET 91
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
ribosomal protein S4 [Brassica napus]
Length = 362
Score = 55.5 bits (132), Expect(3) = 6e-12
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 18/82 (21%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVV--SAEIRRSHFCSVL 640
F +IPQARQLISHRRVCVN + S ISFQ N + EIRRS + +L
Sbjct: 116 FLETIPQARQLISHRRVCVNKGMVSITHLKLSHGDIISFQENNAIIRGEEIRRSFYKEIL 175
Query: 641 --NIMGQV---QIQLWRRTKVE 691
I+G++ +++WRR+K E
Sbjct: 176 VEKIIGKLLHQPLRMWRRSKTE 197
Score = 35.0 bits (79), Expect(3) = 6e-12
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+F++CRLLLGNVW++EL+I
Sbjct: 18 RFQTCRLLLGNVWNRELTI 36
Score = 26.9 bits (58), Expect(3) = 6e-12
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Frame = +3
Query: 378 SHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 65 SYIQLQTTRKLSLFYGDLPITEMHRGTKR-----TSYIPFLLNLET 105
>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
Length = 362
Score = 55.5 bits (132), Expect(3) = 6e-12
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 18/82 (21%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVV--SAEIRRSHFCSVL 640
F +IPQARQLISHRRVCVN + S ISFQ N + EIRRS + +L
Sbjct: 116 FLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEIL 175
Query: 641 --NIMGQV---QIQLWRRTKVE 691
I+G++ +++WRR+K E
Sbjct: 176 VEKIIGKLLHQPLRMWRRSKTE 197
Score = 35.0 bits (79), Expect(3) = 6e-12
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+F++CRLLLGNVW++EL+I
Sbjct: 18 RFQTCRLLLGNVWNRELTI 36
Score = 26.9 bits (58), Expect(3) = 6e-12
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Frame = +3
Query: 378 SHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 65 SYIQLQTTRKLSLFYGDLPITEMHRGTKR-----TSYIPFLLNLET 105
>ref|YP_008999563.1| ribosomal protein S4 (mitochondrion) (mitochondrion) [Helianthus
annuus] gi|20271154|gb|AAM18532.1|AF375591_1 ribosomal
protein S4 [Helianthus annuus]
gi|571031410|gb|AHF21055.1| ribosomal protein S4
(mitochondrion) [Helianthus annuus]
Length = 331
Score = 60.1 bits (144), Expect(3) = 6e-12
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 20/92 (21%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRSI-SFQ-----------NNEVVSAE 610
TR IP+ F+ ++PQARQ ISHRR+CVNN + SI SFQ N+ ++ +E
Sbjct: 91 TRSDVIPVRLHFSETLPQARQPISHRRLCVNNVIVSITSFQVSQGDFISLKENDAIIYSE 150
Query: 611 IRRSHF--CSVLNIMGQ---VQIQLWRRTKVE 691
IRRS + SV I+G+ +++WRRTK E
Sbjct: 151 IRRSFYIEISVSKIIGKSLDSPVRMWRRTKTE 182
Score = 33.9 bits (76), Expect(3) = 6e-12
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 5 RFKTCRLLEGNVWNRELTI 23
Score = 23.5 bits (49), Expect(3) = 6e-12
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY 422
N +S+IQL T RKL LF+
Sbjct: 48 NLNSYIQLQTTRKLPLFH 65
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 55.5 bits (132), Expect(3) = 1e-11
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 18/82 (21%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSAEIRRSHFCSVL 640
F+ +IPQARQLISHRRVCVN + S ISFQ N+ + EIRR + +L
Sbjct: 109 FSETIPQARQLISHRRVCVNKGMVSITHFKVSHGDLISFQENDARIRGEEIRRFFYIEIL 168
Query: 641 --NIMGQV---QIQLWRRTKVE 691
I+G+ +++WRRTK E
Sbjct: 169 VEKIIGKFLDHPVRMWRRTKTE 190
Score = 35.0 bits (79), Expect(3) = 1e-11
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+F++CRLLLGNVW++EL+I
Sbjct: 12 RFQTCRLLLGNVWNRELTI 30
Score = 25.8 bits (55), Expect(3) = 1e-11
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQL T RKLSL Y H+G + + ++ FLL++++
Sbjct: 55 NLNSYIQLQTTRKLSLNYGDLPITEMHRGTER-----TSYIPFLLNLET 98
>ref|XP_010314945.1| PREDICTED: ribosomal protein S4, mitochondrial [Solanum
lycopersicum]
Length = 450
Score = 56.2 bits (134), Expect(3) = 2e-11
Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 18/90 (20%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 607
TR IP+ F +IPQARQ ISHRRVCVNN + + ISFQ N+ +
Sbjct: 196 TRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDARTRGE 255
Query: 608 EIRRSHF--CSVLNIMGQVQIQLWRRTKVE 691
EI+RS + SV I+G+ WRRTK E
Sbjct: 256 EIKRSFYIEISVEKIIGKFLDHPWRRTKTE 285
Score = 34.3 bits (77), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 110 RFKTCRLLSGNVWNRELTI 128
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLFY H+G RE T+ ++ FLL+ ++
Sbjct: 153 NLNSYIQSQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNPET 196
>ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1|
ribosomal protein S4 [Cucurbita pepo]
Length = 356
Score = 50.8 bits (120), Expect(3) = 2e-11
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 18/82 (21%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAV-----------RSISFQNNE--VVSAEIRRSHF--CS 634
F+ ++PQARQLISHRRVCVN + IS + N+ + EIRRS + S
Sbjct: 109 FSSTLPQARQLISHRRVCVNKGMVPITHFKVSHGDLISLKENDARIRGEEIRRSFYIEIS 168
Query: 635 VLNIMGQV---QIQLWRRTKVE 691
V I+G+ +++WRRTK E
Sbjct: 169 VEKIIGKFLDHPVRMWRRTKTE 190
Score = 36.6 bits (83), Expect(3) = 2e-11
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLLLGNVW++EL+I
Sbjct: 12 RFKTCRLLLGNVWNRELTI 30
Score = 28.5 bits (62), Expect(3) = 2e-11
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 55 NLNSYIQLQTTRKLSLFYGDLPITEMHRGRER-----TNYIPFLLNLET 98
>ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum]
Length = 349
Score = 56.2 bits (134), Expect(3) = 2e-11
Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 18/90 (20%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 607
TR IP+ F +IPQARQ ISHRRVCVNN + + ISFQ N+ +
Sbjct: 95 TRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDARTRGE 154
Query: 608 EIRRSHF--CSVLNIMGQVQIQLWRRTKVE 691
EI+RS + SV I+G+ WRRTK E
Sbjct: 155 EIKRSFYIEISVEKIIGKFLDHPWRRTKTE 184
Score = 34.3 bits (77), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 9 RFKTCRLLSGNVWNRELTI 27
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLFY H+G RE T+ ++ FLL+ ++
Sbjct: 52 NLNSYIQSQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNPET 95
>gb|AJM70227.1| ribosomal protein S4 (mitochondrion) [Nicotiana tabacum/Hyoscyamus
niger cybrid] gi|927029504|gb|ALD61798.1| ribosomal
protein S4 (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 56.2 bits (134), Expect(3) = 2e-11
Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 18/90 (20%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 607
TR IP+ F +IPQARQ ISHRRVCVNN + + ISFQ N+ +
Sbjct: 95 TRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDARTRGE 154
Query: 608 EIRRSHF--CSVLNIMGQVQIQLWRRTKVE 691
EI+RS + SV I+G+ WRRTK E
Sbjct: 155 EIKRSFYIEISVEKIIGKFLDHPWRRTKTE 184
Score = 34.3 bits (77), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 9 RFKTCRLLSGNVWNRELTI 27
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLFY H+G RE T+ ++ FLL+ ++
Sbjct: 52 NLNSYIQSQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNPET 95
>ref|YP_009121977.1| ribosomal protein S4 (mitochondrion) [Hyoscyamus niger]
gi|756142184|gb|AJK91395.1| ribosomal protein S4
(mitochondrion) [Hyoscyamus niger]
Length = 349
Score = 56.2 bits (134), Expect(3) = 2e-11
Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 18/90 (20%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 607
TR IP+ F +IPQARQ ISHRRVCVNN + + ISFQ N+ +
Sbjct: 95 TRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDARTRGE 154
Query: 608 EIRRSHF--CSVLNIMGQVQIQLWRRTKVE 691
EI+RS + SV I+G+ WRRTK E
Sbjct: 155 EIKRSFYIEISVEKIIGKFLDHPWRRTKTE 184
Score = 34.3 bits (77), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 9 RFKTCRLLSGNVWNRELTI 27
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLFY H+G RE T+ ++ FLL+ ++
Sbjct: 52 NLNSYIQSQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNPET 95
>ref|YP_009049648.1| ribosomal protein S4 (mitochondrion) [Capsicum annuum]
gi|667751775|gb|AIG89862.1| ribosomal protein S4
(mitochondrion) [Capsicum annuum]
gi|667751920|gb|AIG90006.1| ribosomal protein S4
(mitochondrion) [Capsicum annuum]
Length = 345
Score = 56.2 bits (134), Expect(3) = 2e-11
Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 18/90 (20%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 607
TR IP+ F +IPQARQ ISHRRVCVNN + + ISFQ N+ +
Sbjct: 91 TRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDARTRGE 150
Query: 608 EIRRSHF--CSVLNIMGQVQIQLWRRTKVE 691
EI+RS + SV I+G+ WRRTK E
Sbjct: 151 EIKRSFYIEISVEKIIGKFLDHPWRRTKTE 180
Score = 34.3 bits (77), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 5 RFKTCRLLSGNVWNRELTI 23
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLFY H+G RE T+ ++ FLL+ ++
Sbjct: 48 NLNSYIQSQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNPET 91
>ref|YP_009041168.1| ribosomal protein subunit S4 (mitochondrion) [Rhazya stricta]
gi|645929292|gb|AIB08815.1| ribosomal protein subunit S4
(mitochondrion) [Rhazya stricta]
Length = 393
Score = 56.2 bits (134), Expect(3) = 2e-11
Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 21/93 (22%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 607
TR IP+ F+ +IPQARQ ISHRRVCVNN + S ISFQ N+ +
Sbjct: 136 TRSDVIPVRLHFSETIPQARQPISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGE 195
Query: 608 EIRRSHF--CSVLNIMGQV---QIQLWRRTKVE 691
EIRR + S+ I+G+ I++WRRTK E
Sbjct: 196 EIRRFFYIEISIEKIIGKFLDHPIRMWRRTKTE 228
Score = 33.9 bits (76), Expect(3) = 2e-11
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 229 VGTTQFKSCRLLLGNVWHKELSI 297
V +FK+CRLL GNVW +EL+I
Sbjct: 46 VPALRFKTCRLLSGNVWKRELTI 68
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFYH----KGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLF+ +H+R TS ++ FLL+ ++
Sbjct: 93 NLNSYIQSQTTRKLSLFHGDLPITEMHRRTERTS-YIPFLLNPET 136
>gb|AHX81382.1| ribosomal protein S4 (mitochondrion) [Couepia guianensis]
Length = 356
Score = 60.8 bits (146), Expect(3) = 2e-11
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 21/93 (22%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSA 607
TR IP+ F +IPQARQLISHR+VCVNN + S ISFQ N+ +
Sbjct: 96 TRSDVIPVRLHFCETIPQARQLISHRKVCVNNGMVSITHLKVSHGDIISFQENDARIRGE 155
Query: 608 EIRRSHF--CSVLNIMGQV---QIQLWRRTKVE 691
EIRRS + SV I+G+ +++WRRTK E
Sbjct: 156 EIRRSFYIEISVEKIIGKFLDHSVRMWRRTKTE 188
Score = 31.2 bits (69), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLLLGNV ++EL+I
Sbjct: 10 RFKTCRLLLGNVRNRELTI 28
Score = 23.5 bits (49), Expect(3) = 2e-11
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLF+ H+G + + ++ FLL+ ++
Sbjct: 53 NLNSYIQSQTTRKLSLFHGDLPITKMHRGTKR-----TSYIPFLLNPET 96
>gb|AHX81376.1| ribosomal protein S4 (mitochondrion) [Hirtella racemosa]
gi|618627175|gb|AHX81379.1| ribosomal protein S4
(mitochondrion) [Hirtella physophora]
gi|618627183|gb|AHX81385.1| ribosomal protein S4
(mitochondrion) [Licania heteromorpha]
gi|618627187|gb|AHX81388.1| ribosomal protein S4
(mitochondrion) [Chrysobalanus icaco]
gi|618627191|gb|AHX81391.1| ribosomal protein S4
(mitochondrion) [Parinari campestris]
gi|618627195|gb|AHX81394.1| ribosomal protein S4
(mitochondrion) [Licania sprucei]
gi|618627199|gb|AHX81397.1| ribosomal protein S4
(mitochondrion) [Licania alba]
Length = 353
Score = 60.8 bits (146), Expect(3) = 2e-11
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 21/93 (22%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSA 607
TR IP+ F +IPQARQLISHR+VCVNN + S ISFQ N+ +
Sbjct: 96 TRSDVIPVRLHFCETIPQARQLISHRKVCVNNGMVSITHLKVSHGDIISFQENDARIRGE 155
Query: 608 EIRRSHF--CSVLNIMGQV---QIQLWRRTKVE 691
EIRRS + SV I+G+ +++WRRTK E
Sbjct: 156 EIRRSFYIEISVEKIIGKFLDHSVRMWRRTKTE 188
Score = 31.2 bits (69), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLLLGNV ++EL+I
Sbjct: 10 RFKTCRLLLGNVRNRELTI 28
Score = 23.5 bits (49), Expect(3) = 2e-11
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
N +S+IQ T RKLSLF+ H+G + + ++ FLL+ ++
Sbjct: 53 NLNSYIQSQTTRKLSLFHGDLPITKMHRGTKR-----TSYIPFLLNPET 96
>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
Length = 362
Score = 57.4 bits (137), Expect(3) = 8e-11
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 21/93 (22%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVV--SA 607
TR IP+ F +IPQARQLISHRRVCVN + S ISFQ N +
Sbjct: 105 TRFDVIPLRLYFLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGE 164
Query: 608 EIRRSHFCSVL--NIMGQV---QIQLWRRTKVE 691
EIRRS + +L I+G++ +++WRR+K E
Sbjct: 165 EIRRSFYKEILVEKIIGKLLHQPLRMWRRSKTE 197
Score = 32.7 bits (73), Expect(3) = 8e-11
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+F++CRLL GNVW++EL+I
Sbjct: 18 RFQTCRLLSGNVWNRELTI 36
Score = 23.5 bits (49), Expect(3) = 8e-11
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Frame = +3
Query: 378 SHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 491
S+IQL T RKL FY H+G + + ++ FLL++++
Sbjct: 65 SYIQLQTTRKLPFFYGDLPITEMHRGTKR-----TSYIPFLLNLET 105
>ref|YP_008964100.1| truncated ribosomal protein S4 (mitochondrion) (mitochondrion)
[Ajuga reptans] gi|558697232|gb|AHA84986.1| truncated
ribosomal protein S4 (mitochondrion) [Ajuga reptans]
Length = 224
Score = 43.5 bits (101), Expect(3) = 1e-10
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 17/79 (21%)
Frame = +2
Query: 500 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVSAE-IRRSHFCSVL- 640
F ++PQARQLISH RVCVN+ V + IS++ N+V + E IRRS + L
Sbjct: 95 FCQTLPQARQLISHGRVCVNHQVVNRIRWKVSPGDLISWKENDVRTHEKIRRSLYVRFLV 154
Query: 641 -NIMG---QVQIQLWRRTK 685
++G I++WRR K
Sbjct: 155 DKVIGGSLHRPIRVWRRKK 173
Score = 35.0 bits (79), Expect(3) = 1e-10
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +3
Query: 330 GARRDPVVGNAAPNQHSHIQLAT*RKLSLFYHKGIHKRE*TTSEFVLFLLDVD 488
G RR NQHS+IQL T RKLSLFY R F+ FLL+++
Sbjct: 31 GLRRKGRFLKMTKNQHSNIQLETTRKLSLFYGDLSVTRTDRRIYFIPFLLNLE 83
Score = 34.7 bits (78), Expect(3) = 1e-10
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FKSCRLL GNVW++EL+I
Sbjct: 5 RFKSCRLLGGNVWNRELTI 23
>gb|AGL75402.1| ribosomal protein S4 (mitochondrion) [Utricularia gibba]
Length = 370
Score = 54.7 bits (130), Expect(3) = 2e-10
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 17/89 (19%)
Frame = +2
Query: 476 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRSI---SFQNNEVVS------AEIRR 619
TR IP+ F +IPQARQ ISHRRVCVNN + +I + E++S EIRR
Sbjct: 90 TRSDVIPVRLHFRETIPQARQPISHRRVCVNNRMVNIIHFKVSHGELISLKENDAREIRR 149
Query: 620 SHF--CSVLNIMGQV---QIQLWRRTKVE 691
S + SV I+G+ +++WRRTK E
Sbjct: 150 SFYIEISVEKIIGKFLDRPVRMWRRTKTE 178
Score = 34.3 bits (77), Expect(3) = 2e-10
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 241 QFKSCRLLLGNVWHKELSI 297
+FK+CRLL GNVW++EL+I
Sbjct: 5 RFKTCRLLSGNVWNRELTI 23
Score = 23.1 bits (48), Expect(3) = 2e-10
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 369 NQHSHIQLAT*RKLSLFY 422
N +S+IQ T RKLSLF+
Sbjct: 48 NLNSYIQSQTTRKLSLFH 65