BLASTX nr result
ID: Papaver30_contig00005311
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver30_contig00005311
(4496 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007219137.1| hypothetical protein PRUPE_ppa015965mg [Prun... 818 0.0
ref|XP_007203318.1| hypothetical protein PRUPE_ppa019964mg, part... 804 0.0
ref|XP_007224256.1| hypothetical protein PRUPE_ppa018408mg, part... 742 0.0
ref|XP_007226950.1| hypothetical protein PRUPE_ppa025194mg, part... 626 0.0
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 414 0.0
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 421 0.0
ref|XP_007219089.1| hypothetical protein PRUPE_ppa015100mg, part... 379 0.0
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 395 0.0
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 408 0.0
ref|XP_013749392.1| PREDICTED: uncharacterized protein LOC106451... 389 0.0
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 404 0.0
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 408 0.0
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 401 0.0
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 405 0.0
ref|XP_013689613.1| PREDICTED: uncharacterized protein LOC106393... 387 0.0
ref|XP_013669253.1| PREDICTED: uncharacterized protein LOC106373... 382 0.0
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 398 0.0
dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indic... 395 0.0
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 398 0.0
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The... 384 e-180
>ref|XP_007219137.1| hypothetical protein PRUPE_ppa015965mg [Prunus persica]
gi|462415599|gb|EMJ20336.1| hypothetical protein
PRUPE_ppa015965mg [Prunus persica]
Length = 1484
Score = 818 bits (2113), Expect(2) = 0.0
Identities = 399/602 (66%), Positives = 468/602 (77%), Gaps = 4/602 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F+GAC YLRKFIRHFS IA LH LT A KFE + HE++FQLLKRKI+EAPVL LP
Sbjct: 814 RSFIGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQLLKRKITEAPVLALP 873
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
N+ F+VE DASNYA+G VL QDGKPV YHS++FS + NY YDKE Y+++Q +KHWR
Sbjct: 874 NLQKPFDVEADASNYAMGAVLFQDGKPVAYHSKMFSGPVLNYPTYDKELYAMHQAVKHWR 933
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+LGK VVVH+DHKPL++L Q+KLQ ARHMK MSYL FNI+I+YKKG TNKLADMLS
Sbjct: 934 AYLLGKEVVVHSDHKPLQFLTTQSKLQHARHMKWMSYLQQFNIVIKYKKGTTNKLADMLS 993
Query: 2464 RPPV---RALMVSMRIQPIVPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQ 2634
RPP AL+V+M+IQPIVP EYA+ Y +E++L+DGL+YKG
Sbjct: 994 RPPTPVSSALLVAMQIQPIVPSEYAKGYDTDTDFNSAYAKLQQGKTSEFQLKDGLMYKGT 1053
Query: 2635 LLCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCST 2814
LCIPE GDRLQW+REAHTS+VAGHFG+ KTLLNL RYV+W KM DV++ +RG LC+T
Sbjct: 1054 QLCIPEDGDRLQWIREAHTSKVAGHFGVEKTLLNLRRYVYWPKMHLDVSRYIRGCVLCNT 1113
Query: 2815 SKPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTK 2994
SKPSN GLYLPLP+PS PWESISMDFLGGLPKTKSG+DYLFVVVDR SKM+ LIPC K
Sbjct: 1114 SKPSNRKLGLYLPLPIPSLPWESISMDFLGGLPKTKSGNDYLFVVVDRFSKMVILIPCKK 1173
Query: 2995 TVMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTD 3174
TV G A KLFF+HVWK+FGLPTSI+SDRDSRFL HF SLW+MMD+RLK++TTFHPQTD
Sbjct: 1174 TVTGEGAAKLFFQHVWKYFGLPTSIISDRDSRFLGHFWRSLWEMMDTRLKRSTTFHPQTD 1233
Query: 3175 GQTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSP 3354
GQTEVVNRTMVH+LRGYNSKHPKTWDESLPYL FAFN A+H S+ KSPFE C GYLP SP
Sbjct: 1234 GQTEVVNRTMVHLLRGYNSKHPKTWDESLPYLQFAFNRAIHGSTLKSPFEVCLGYLPQSP 1293
Query: 3355 FDLVFS-SDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCN 3531
FDL F+ SD + GKE E +A+KFLE++ +IH VEAQLK+SQ +YKA+HDKH VPCN
Sbjct: 1294 FDLAFTMSDQPLSGKEEEEHIRAKKFLERVRKIHIEVEAQLKRSQQRYKARHDKHRVPCN 1353
Query: 3532 FGVGDXXXXXXXXXXXXXXXXXXXXXXYGPFRILDQIGNNAFRLDLPPYLGMYSVINAEY 3711
F GD YGPF+I+ QIG+NAF+L+LPPY+ MYSVINAE
Sbjct: 1354 FKEGDLVWLHLGKERLTGEGKKLKPIRYGPFKIIKQIGDNAFQLELPPYMHMYSVINAEN 1413
Query: 3712 LK 3717
LK
Sbjct: 1414 LK 1415
Score = 330 bits (845), Expect(2) = 0.0
Identities = 165/265 (62%), Positives = 195/265 (73%)
Frame = +2
Query: 1136 LKLKYKDPFSDVTGLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELG 1315
L+ K+KD F DV G +S LPN+GLYRT++ ES+EIKKQ+Q LLE G
Sbjct: 581 LQEKFKDLFHDVQG---------------DSPLPNLGLYRTSLMESDEIKKQIQGLLEQG 625
Query: 1316 MIVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFT 1495
+I PS SP GS VLLVPKKDGGWRMC+DYRALNKITIKNRYPLPRIDD++DQL FT
Sbjct: 626 IIKPSCSPCGSPVLLVPKKDGGWRMCVDYRALNKITIKNRYPLPRIDDLLDQLHGAHYFT 685
Query: 1496 KLDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEY 1675
KLD K YH +R+ E+DTWKTAFKTKQGLFEWLVMPFGLCNA ATFM LMN+++RPFI+
Sbjct: 686 KLDLKSGYHQVRIHEEDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDD 745
Query: 1676 FAIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQ 1855
F IVYLDDILI+ TWE+HL H + CEFGK+ LVYLGFIVG G+
Sbjct: 746 FVIVYLDDILIFSVTWEDHLHHI---------------AQKCEFGKQHLVYLGFIVGAGE 790
Query: 1856 RKIDPKKVEVITKWARPSTVTEIRS 1930
K+D +KV VI++W P +VTE+RS
Sbjct: 791 LKMDLEKVHVISQWPTPRSVTEVRS 815
Score = 299 bits (765), Expect(2) = 2e-83
Identities = 150/316 (47%), Positives = 209/316 (66%), Gaps = 3/316 (0%)
Frame = +2
Query: 2 VVRKQFYPVGYLEERWFKWYNLKQIYNQTIQDYTSEFQNQAMILDLDLGDYVIYMKYISG 181
++RKQFYPVGY +ERW+KW + +Q + Q +Q+YT++F NQAM+LD+D+ DY ++MKY G
Sbjct: 198 LLRKQFYPVGYEDERWYKWQHFRQRFGQHVQEYTTKFHNQAMVLDIDVDDYDVFMKYTGG 257
Query: 182 IHEYIRKELKMFSVNTISEASIKATAIEGRHKKSDXXXXXXXXXXXXXXXXXXXXXXXXX 361
+ +YIRKELK+F+V+TI +A++KA AIE ++K++D
Sbjct: 258 LADYIRKELKLFTVDTIEKATVKAIAIEAKNKRTDKKDDRSKPVNKTDWQKKGKRSKEGQ 317
Query: 362 XXXXXXXXCTHCKQTGHVVDKCWVKNPHLKPK---GLQRKESRKAALVAQTPKGVHGLTE 532
C HC+ + H DKCW +P L+PK Q + RKA L Q + + L +
Sbjct: 318 TQKVY---CDHCQTSRHAKDKCWTLHPELRPKREKNNQGRNDRKATLTTQQAEELPELKQ 374
Query: 533 PNSKLSLMTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLK 712
P+ L+LMT + + RE+LF VN+QVK ++V +ID GSQKNL+S +LV+K+GL+
Sbjct: 375 PDVTLTLMTRPADIEDTYN-REELFHVNIQVKQSVVQAIIDPGSQKNLISEALVRKVGLE 433
Query: 713 TNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWD 892
T HPK PLGW+QK+ LQ+++QCTFKFA+ IDEVTC+VVPLDVCQV+ GSPYLWD
Sbjct: 434 TTPHPKPYPLGWIQKDVDLQITKQCTFKFAITNRYIDEVTCEVVPLDVCQVILGSPYLWD 493
Query: 893 RDANLQRREQKYTLPK 940
RDA RR +KY L K
Sbjct: 494 RDAIHYRRLRKYRLVK 509
Score = 42.0 bits (97), Expect(2) = 2e-83
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 922 KVHLTKDGESFAIRAISSPLEGAIL----ITATQSKQLVNAITKFILLVIRSLEEKPSRV 1089
K L KDG+ F I A +L +TA Q+K+LVN+ +F+LL+IR ++ V
Sbjct: 504 KYRLVKDGKEFHINACKPQATNNLLTDNLLTANQAKRLVNSCGRFVLLMIRPQDQSSRAV 563
Query: 1090 CLAVLT 1107
L+ L+
Sbjct: 564 TLSTLS 569
>ref|XP_007203318.1| hypothetical protein PRUPE_ppa019964mg, partial [Prunus persica]
gi|462398849|gb|EMJ04517.1| hypothetical protein
PRUPE_ppa019964mg, partial [Prunus persica]
Length = 1488
Score = 804 bits (2076), Expect(2) = 0.0
Identities = 392/594 (65%), Positives = 460/594 (77%), Gaps = 4/594 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F+GAC YLRKFIRHFS IA LH LT A KFE + HE++FQLLKRKI+EAPVL LP
Sbjct: 816 RSFIGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQLLKRKITEAPVLALP 875
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
N+ F++E DASNYA+G VL Q+GKPV YHSE+FS + NY YDKE Y+++Q +KHWR
Sbjct: 876 NLQKPFDIEADASNYAMGAVLFQEGKPVAYHSEMFSGPVLNYPTYDKELYAMHQAVKHWR 935
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+LGK VVVH+DHKPL++L Q+KLQ ARHMK MSYL FNI+I+YKKG TNKLADMLS
Sbjct: 936 AYLLGKEVVVHSDHKPLQFLTTQSKLQHARHMKWMSYLQQFNIVIKYKKGTTNKLADMLS 995
Query: 2464 RPPV---RALMVSMRIQPIVPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQ 2634
RPP AL+V+M+IQPIVP EYA+ Y +E++L+DGL+YKG
Sbjct: 996 RPPTPVSSALLVAMQIQPIVPSEYAKGYDTDTDFNLAYAKLQQGKTSEFQLKDGLMYKGT 1055
Query: 2635 LLCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCST 2814
LCIPE GDRLQW+REAHTS+VAGHFG+ KTLLNL RYV+W KM DV++ +RG LC+T
Sbjct: 1056 QLCIPEDGDRLQWIREAHTSKVAGHFGVEKTLLNLRRYVYWPKMHLDVSRYIRGCVLCNT 1115
Query: 2815 SKPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTK 2994
SKPSN GLYLPLPVPSRPWESISMDFLGGLPKTKSG+DYLFVVVDR SKM+ LIPC K
Sbjct: 1116 SKPSNRKLGLYLPLPVPSRPWESISMDFLGGLPKTKSGNDYLFVVVDRFSKMVILIPCKK 1175
Query: 2995 TVMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTD 3174
TV G A KLFF+HVWK+FGLPTSI+SDRDSRFL HF SLW+MMD+RLK++T FH QTD
Sbjct: 1176 TVTGEGAAKLFFQHVWKYFGLPTSIISDRDSRFLGHFWRSLWEMMDTRLKRSTAFHLQTD 1235
Query: 3175 GQTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSP 3354
GQTEVVNRTMVH+LRGYNSKHPKTWDESLPYL FAFN A+H S+ KSPFE C GYLP SP
Sbjct: 1236 GQTEVVNRTMVHLLRGYNSKHPKTWDESLPYLQFAFNRAIHGSTLKSPFEVCLGYLPQSP 1295
Query: 3355 FDLVFS-SDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCN 3531
FDL F+ SD + GKE E +A+KFLE+I +IH VEAQLK+SQ +YKA+HDKH VPCN
Sbjct: 1296 FDLAFTMSDQPLSGKEEEEHIRAKKFLERIRKIHIEVEAQLKRSQQRYKARHDKHRVPCN 1355
Query: 3532 FGVGDXXXXXXXXXXXXXXXXXXXXXXYGPFRILDQIGNNAFRLDLPPYLGMYS 3693
F GD YGPF+I+ QIG+NAF+L+LPPY+ MYS
Sbjct: 1356 FKEGDLVWLHLGKERLTGEGKKLKPIRYGPFKIIKQIGDNAFQLELPPYMHMYS 1409
Score = 380 bits (976), Expect(2) = 0.0
Identities = 180/265 (67%), Positives = 215/265 (81%)
Frame = +2
Query: 1136 LKLKYKDPFSDVTGLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELG 1315
L+ K+KD F DV GLPP R++EHE+ L G+S LPN+GLYRT++ ES+EIKKQ+Q LLE G
Sbjct: 553 LQEKFKDLFHDVQGLPPQRAIEHELQLVGDSHLPNLGLYRTSLMESDEIKKQIQGLLEQG 612
Query: 1316 MIVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFT 1495
+I PS SP GS VLLVPKKDGGW MC+DYRALNKITIKNRYPLPRIDD++DQL FT
Sbjct: 613 IIKPSCSPCGSPVLLVPKKDGGWHMCVDYRALNKITIKNRYPLPRIDDLLDQLHGAHYFT 672
Query: 1496 KLDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEY 1675
KLD K YH +R+ E+DTWKTAFK KQGLFEWLVMPFGLCNA ATFM LMN+++RPFI+
Sbjct: 673 KLDLKSGYHQVRIHEEDTWKTAFKIKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDD 732
Query: 1676 FAIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQ 1855
F IVYLDDILI+ TWE+HL H +V +VL QL+LN K CEFGK+ LVYLGFIVG G+
Sbjct: 733 FVIVYLDDILIFSVTWEDHLHHIAQVLEVLRTNQLQLNGKKCEFGKQHLVYLGFIVGAGE 792
Query: 1856 RKIDPKKVEVITKWARPSTVTEIRS 1930
K+D +KV VI++W P +VTE+RS
Sbjct: 793 LKMDLEKVHVISQWPTPRSVTEVRS 817
Score = 301 bits (771), Expect(2) = 7e-83
Identities = 151/316 (47%), Positives = 209/316 (66%), Gaps = 3/316 (0%)
Frame = +2
Query: 2 VVRKQFYPVGYLEERWFKWYNLKQIYNQTIQDYTSEFQNQAMILDLDLGDYVIYMKYISG 181
++RKQFYPVGY +ERW+KW + +Q + Q +Q+YT+EF NQAM+LD+D+ DY ++M Y G
Sbjct: 188 LLRKQFYPVGYEDERWYKWQHFRQRFGQHVQEYTTEFHNQAMVLDIDVDDYDVFMNYTGG 247
Query: 182 IHEYIRKELKMFSVNTISEASIKATAIEGRHKKSDXXXXXXXXXXXXXXXXXXXXXXXXX 361
+ +YIRKELK+F+V+TI EA++KA AIE ++K++D
Sbjct: 248 LADYIRKELKLFTVDTIEEATVKAIAIEAKNKRTDKKDDRSKPVNKTDWQKKGKQSKEGQ 307
Query: 362 XXXXXXXXCTHCKQTGHVVDKCWVKNPHLKPK---GLQRKESRKAALVAQTPKGVHGLTE 532
C HC+ + H DKCW+ +P L+PK Q + RKA L Q + + L +
Sbjct: 308 TQKVY---CDHCQTSRHAKDKCWILHPELRPKREKNNQGRNDRKATLTTQQAEELPELKQ 364
Query: 533 PNSKLSLMTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLK 712
P+ L+LMT + + RE+LF VN+QVK ++V +ID GSQKNL+S +LV+K+GL+
Sbjct: 365 PDVTLTLMTRPADIEDTYN-REELFHVNIQVKQSVVQAIIDPGSQKNLISEALVRKVGLE 423
Query: 713 TNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWD 892
T HPK PLGW+QK+ LQ+++QCTFKFA+ IDEVTC+VVPLDVCQV+ GSPYLWD
Sbjct: 424 TTPHPKPYPLGWIQKDVDLQITKQCTFKFAITNRYIDEVTCEVVPLDVCQVILGSPYLWD 483
Query: 893 RDANLQRREQKYTLPK 940
RDA RR +KY L K
Sbjct: 484 RDAIHYRRLRKYRLVK 499
Score = 38.1 bits (87), Expect(2) = 7e-83
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +1
Query: 922 KVHLTKDGESFAIRAISSPLEGAIL----ITATQSKQLVNAITKFILLVIRSLEE 1074
K L KDG+ F I A +L +TA Q+K+LVN+ +F+LL+IR ++
Sbjct: 494 KYRLVKDGKEFHINACKPQATNNLLTDNLLTANQAKRLVNSCGRFVLLMIRPQDQ 548
Score = 66.6 bits (161), Expect = 2e-07
Identities = 30/65 (46%), Positives = 48/65 (73%)
Frame = +3
Query: 3765 LPRVVDLWFDREEPLKEDCILERRVTKTRQGEKKAFLIGCKSQVPCKAK*FNKENGALEF 3944
LP V DL ++E+PL++DCILE++V +TR G+ + F IG K Q+P K+K + ++ LEF
Sbjct: 1423 LPSVDDLQIEQEDPLQQDCILEQKVRETRHGKYEYFRIGSKGQLPSKSKWYIRDKAILEF 1482
Query: 3945 PNLHL 3959
P+L++
Sbjct: 1483 PHLNV 1487
>ref|XP_007224256.1| hypothetical protein PRUPE_ppa018408mg, partial [Prunus persica]
gi|462421192|gb|EMJ25455.1| hypothetical protein
PRUPE_ppa018408mg, partial [Prunus persica]
Length = 1440
Score = 742 bits (1916), Expect(2) = 0.0
Identities = 371/602 (61%), Positives = 437/602 (72%), Gaps = 4/602 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F+GAC YLRKFIRHFS IA LH LT A KFE + HE++FQLLKRKI+EAPVL LP
Sbjct: 816 RSFIGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQLLKRKITEAPVLALP 875
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
N+ F+VE DASNYA+G VL QDGKPV YHSE+FS + NY YDKE Y+++Q +KHWR
Sbjct: 876 NLQKPFDVEADASNYAMGAVLFQDGKPVAYHSEMFSGPVLNYPTYDKELYAMHQVVKHWR 935
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+LGK VVVH+DHKPL++L Q+KLQ ARHMK MSYL FNI+I+YKKG TNKLADMLS
Sbjct: 936 AYLLGKEVVVHSDHKPLQFLTTQSKLQHARHMKWMSYLQQFNIVIKYKKGTTNKLADMLS 995
Query: 2464 RPPV---RALMVSMRIQPIVPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQ 2634
RPP AL+V+M+IQPIVP EYA+ Y +E++L+DGL+YKG
Sbjct: 996 RPPTPVSSALLVAMQIQPIVPSEYAKGYDTDTDFNSAYAKLQQGKTSEFQLKDGLMYKGT 1055
Query: 2635 LLCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCST 2814
LCIPE GDRLQW+REAHTS+VAGHFG+ KTLLNL RYV+W K+ DV++ +RG LC+T
Sbjct: 1056 QLCIPEDGDRLQWIREAHTSKVAGHFGVEKTLLNLRRYVYWPKIHLDVSRYIRGCVLCNT 1115
Query: 2815 SKPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTK 2994
SKPSN GLYLPLPVPSRPWESISMDFLG
Sbjct: 1116 SKPSNRKLGLYLPLPVPSRPWESISMDFLG------------------------------ 1145
Query: 2995 TVMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTD 3174
A KLFF+HVWK+FGLPTSI+ DRDSRFL HF SLW+MMD+RLK++T FHPQTD
Sbjct: 1146 ------AAKLFFQHVWKYFGLPTSIIFDRDSRFLGHFWRSLWEMMDTRLKRSTAFHPQTD 1199
Query: 3175 GQTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSP 3354
GQTEVVNRTMVH+LRGYNSKHPKTWDESLPYL FAFN A+H S+ KSPFE C GYLP SP
Sbjct: 1200 GQTEVVNRTMVHLLRGYNSKHPKTWDESLPYLQFAFNRAIHGSTLKSPFEVCLGYLPQSP 1259
Query: 3355 FDLVFS-SDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCN 3531
FDL F+ SD + GKE E +A+KFLE++ +IH VEAQLK+SQ +YKA+HDKH VPCN
Sbjct: 1260 FDLAFTMSDQPLSGKEEEEHIRAKKFLERVRKIHIEVEAQLKRSQQRYKARHDKHHVPCN 1319
Query: 3532 FGVGDXXXXXXXXXXXXXXXXXXXXXXYGPFRILDQIGNNAFRLDLPPYLGMYSVINAEY 3711
F GD YGPF+I+ QIG+NAF+L+LPPY+ MYSVINAE
Sbjct: 1320 FKEGDLVWLHLGKERLTGEGKKLKPIRYGPFKIIKQIGDNAFQLELPPYMHMYSVINAEN 1379
Query: 3712 LK 3717
LK
Sbjct: 1380 LK 1381
Score = 382 bits (981), Expect(2) = 0.0
Identities = 182/265 (68%), Positives = 216/265 (81%)
Frame = +2
Query: 1136 LKLKYKDPFSDVTGLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELG 1315
L+ K+KD F DV GLPP R++EHEI L G+S LPN+GLYRT++ ES+EIKKQ+Q LLE G
Sbjct: 553 LQEKFKDLFHDVQGLPPQRAIEHEIQLVGDSPLPNLGLYRTSLMESDEIKKQIQGLLEQG 612
Query: 1316 MIVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFT 1495
+I PS SP GS VLLVPKKDGGWRMC+DYRALNKITIKNRYPLPRIDD++DQL FT
Sbjct: 613 VIKPSCSPCGSPVLLVPKKDGGWRMCVDYRALNKITIKNRYPLPRIDDLLDQLHGAHYFT 672
Query: 1496 KLDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEY 1675
KLD K YH +R+ E+DTWKTAFKTKQGLFEWLVMPFGLCNA ATFM LMN+++RPFI+
Sbjct: 673 KLDLKSGYHQVRIHEEDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMQLMNEVLRPFIDD 732
Query: 1676 FAIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQ 1855
F IVYLDDILI+ TWE+HL H +V +VL QL+LN K CEFGK+ LVYLGFIVG +
Sbjct: 733 FVIVYLDDILIFSVTWEDHLHHIAQVLEVLRTNQLQLNGKKCEFGKQHLVYLGFIVGAEE 792
Query: 1856 RKIDPKKVEVITKWARPSTVTEIRS 1930
K+D +KV VI++W P +VTE+RS
Sbjct: 793 LKMDLEKVHVISQWPTPRSVTEVRS 817
Score = 303 bits (776), Expect(2) = 2e-83
Identities = 152/316 (48%), Positives = 210/316 (66%), Gaps = 3/316 (0%)
Frame = +2
Query: 2 VVRKQFYPVGYLEERWFKWYNLKQIYNQTIQDYTSEFQNQAMILDLDLGDYVIYMKYISG 181
++RKQFYPVGY +ERW+KW + +Q + Q +Q+YT+EF NQAM+LD+D+ DY ++MKY G
Sbjct: 188 LLRKQFYPVGYEDERWYKWQHFRQRFGQHVQEYTTEFHNQAMVLDIDVDDYDVFMKYTGG 247
Query: 182 IHEYIRKELKMFSVNTISEASIKATAIEGRHKKSDXXXXXXXXXXXXXXXXXXXXXXXXX 361
+ +YIRKELK+F+V+TI EA++KA AIE ++K++D
Sbjct: 248 LADYIRKELKLFTVDTIEEATVKAIAIEAKNKRTDKKDDRSKPVNKTDWQKKGKQSKEGQ 307
Query: 362 XXXXXXXXCTHCKQTGHVVDKCWVKNPHLKPK---GLQRKESRKAALVAQTPKGVHGLTE 532
C HC+ + H DKCW+ +P L+PK Q + RKA L Q + + L +
Sbjct: 308 TQKVY---CDHCQTSRHAKDKCWILHPELRPKREKNNQGRNDRKATLTTQQAEELPELKQ 364
Query: 533 PNSKLSLMTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLK 712
P+ L+LMT + + RE+LF VN+QVK ++V +ID GSQKNL+S +LV+K+GL+
Sbjct: 365 PDVTLTLMTRPADIEDTYN-REELFHVNIQVKQSVVQAIIDPGSQKNLISEALVRKVGLE 423
Query: 713 TNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWD 892
T HPK PLGW+QK+ LQ+++QCTFKFA+ IDEVTC+VVPLDVCQV+ GSPYLWD
Sbjct: 424 TTPHPKPYPLGWIQKDVDLQITKQCTFKFAITNRYIDEVTCEVVPLDVCQVILGSPYLWD 483
Query: 893 RDANLQRREQKYTLPK 940
RDA RR +KY L K
Sbjct: 484 RDAIHYRRLRKYRLVK 499
Score = 38.1 bits (87), Expect(2) = 2e-83
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +1
Query: 922 KVHLTKDGESFAIRAISSPLEGAIL----ITATQSKQLVNAITKFILLVIRSLEE 1074
K L KDG+ F I A +L +TA Q+K+LVN+ +F+LL+IR ++
Sbjct: 494 KYRLVKDGKEFHINACKHQATNNLLTDNLLTANQAKRLVNSCGRFVLLMIRPQDQ 548
>ref|XP_007226950.1| hypothetical protein PRUPE_ppa025194mg, partial [Prunus persica]
gi|462423886|gb|EMJ28149.1| hypothetical protein
PRUPE_ppa025194mg, partial [Prunus persica]
Length = 1347
Score = 626 bits (1615), Expect(4) = 0.0
Identities = 320/527 (60%), Positives = 378/527 (71%), Gaps = 4/527 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F+GAC YLRKFIRHFS IA LH LT A KFE + HE++FQLLKRKI+EAPVL LP
Sbjct: 743 RSFIGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQLLKRKITEAPVLALP 802
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
N+ F+VE DASNYA+G VL QDGKPV YHSE+FS + NY YDKE Y+++Q +KHWR
Sbjct: 803 NLQKPFDVEADASNYAMGAVLFQDGKPVAYHSEMFSGPVLNYPTYDKELYAMHQAVKHWR 862
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+LGK VVVH+DHKPL++L Q+KLQ ARHMK MSYL FNI+I+YKKG TNKLADMLS
Sbjct: 863 AYLLGKEVVVHSDHKPLQFLTTQSKLQHARHMKWMSYLQQFNIVIKYKKGTTNKLADMLS 922
Query: 2464 RPPV---RALMVSMRIQPIVPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQ 2634
RPP AL+V+M+IQPIVP EYA+ Y +E++L+DGL+YKG
Sbjct: 923 RPPTPVSSALLVAMQIQPIVPSEYAKGYDTDTDFNSTYAKLQQGKTSEFQLKDGLMYKGT 982
Query: 2635 LLCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCST 2814
LCIPE GDRLQW+REAHTS+VAGHFG+ KTLLNL RYV+W KM DV++ +RG LC+
Sbjct: 983 QLCIPEDGDRLQWIREAHTSKVAGHFGVEKTLLNLRRYVYWPKMHLDVSRYIRGCVLCNI 1042
Query: 2815 SKPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTK 2994
SKPSN GL ISMDFLGGLPKTKSG+DYLFVVVDR SKM+ LIPC K
Sbjct: 1043 SKPSNRKLGL-------------ISMDFLGGLPKTKSGNDYLFVVVDRFSKMVILIPCKK 1089
Query: 2995 TVMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTD 3174
TV G A KLFF+HVWK+FGL TSI+SDRDSRFL HF SLW+MMD+RL K
Sbjct: 1090 TVTGEGAAKLFFQHVWKYFGLHTSIISDRDSRFLGHFWRSLWEMMDTRLNKKIL------ 1143
Query: 3175 GQTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSP 3354
+ HPKTWDESLPYL FAFN A+H S+ KSPFE C GYLP SP
Sbjct: 1144 ----------------CSRIHPKTWDESLPYLQFAFNRAIHGSTLKSPFEVCLGYLPQSP 1187
Query: 3355 FDLVFS-SDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSK 3492
FDL F+ SD + GKE E +A+KFLE++ +IH VEAQLK+SQ +
Sbjct: 1188 FDLAFTMSDQPLSGKEEEEHIRAKKFLERVRKIHIEVEAQLKRSQQR 1234
Score = 376 bits (965), Expect(4) = 0.0
Identities = 179/262 (68%), Positives = 212/262 (80%)
Frame = +2
Query: 1145 KYKDPFSDVTGLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIV 1324
K+KD F DV GLPP R++EHEI L G+S LPN+GLYRT++ ES+EIKKQ+Q LLE G+I
Sbjct: 483 KFKDLFHDVQGLPPQRAIEHEIQLVGDSPLPNLGLYRTSLMESDEIKKQIQGLLEQGIIK 542
Query: 1325 PSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLD 1504
PS SP GS VLLVPKKDGGW MC+DYRALNKITIKNRYPLPRIDD++DQL FTKLD
Sbjct: 543 PSCSPCGSPVLLVPKKDGGWSMCVDYRALNKITIKNRYPLPRIDDLLDQLHGAHYFTKLD 602
Query: 1505 FKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAI 1684
K YH +R+ E+DTWKTAFKTKQGLFEWLVMPFGLCNA ATFM LMN+++RPFI+ F I
Sbjct: 603 LKSGYHQVRIHEEDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDDFII 662
Query: 1685 VYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKI 1864
VYLDDILI+ TWE+HL H +V +VL QL+LN K CEFGK+ LVY GFIVG + K+
Sbjct: 663 VYLDDILIFSVTWEDHLHHIAQVLEVLRTNQLQLNGKKCEFGKQHLVYPGFIVGARELKM 722
Query: 1865 DPKKVEVITKWARPSTVTEIRS 1930
D +KV VI++W P +VTE+RS
Sbjct: 723 DLEKVHVISQWPTPRSVTEVRS 744
Score = 303 bits (776), Expect(4) = 0.0
Identities = 152/316 (48%), Positives = 210/316 (66%), Gaps = 3/316 (0%)
Frame = +2
Query: 2 VVRKQFYPVGYLEERWFKWYNLKQIYNQTIQDYTSEFQNQAMILDLDLGDYVIYMKYISG 181
++RKQFYPVGY +ERW+KW + +Q + Q +Q+YT+EF NQAM+LD+D+ DY ++MKY G
Sbjct: 117 LLRKQFYPVGYEDERWYKWQHFRQRFGQHVQEYTTEFHNQAMVLDIDVDDYDVFMKYTGG 176
Query: 182 IHEYIRKELKMFSVNTISEASIKATAIEGRHKKSDXXXXXXXXXXXXXXXXXXXXXXXXX 361
+ +YIRKELK+F+V+TI EA++KA AIE ++K++D
Sbjct: 177 LADYIRKELKLFTVDTIEEATVKAIAIEAKNKRTDKKDDRSKPVNKTDWQKKGKQSKEGQ 236
Query: 362 XXXXXXXXCTHCKQTGHVVDKCWVKNPHLKPK---GLQRKESRKAALVAQTPKGVHGLTE 532
C HC+ + H DKCW+ +P L+PK Q + RKA L Q + + L +
Sbjct: 237 TQKVY---CDHCQTSRHAKDKCWILHPELRPKREKNNQGRNDRKATLTTQQAEELPELKQ 293
Query: 533 PNSKLSLMTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLK 712
P+ L+LMT + + RE+LF VN+QVK ++V +ID GSQKNL+S +LV+K+GL+
Sbjct: 294 PDVTLTLMTRPADIEDTYN-REELFHVNIQVKQSVVQAIIDPGSQKNLISEALVRKVGLE 352
Query: 713 TNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWD 892
T HPK PLGW+QK+ LQ+++QCTFKFA+ IDEVTC+VVPLDVCQV+ GSPYLWD
Sbjct: 353 TTPHPKPYPLGWIQKDVDLQITKQCTFKFAITNRYIDEVTCEVVPLDVCQVILGSPYLWD 412
Query: 893 RDANLQRREQKYTLPK 940
RDA RR +KY L K
Sbjct: 413 RDAIHYRRLRKYRLVK 428
Score = 38.9 bits (89), Expect(4) = 0.0
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +1
Query: 922 KVHLTKDGESFAIRAISSPLEGAILI----TATQSKQLVNAITKFILLVIRSLEE 1074
K L KDG+ F I A +LI TA Q+K+LVN+ +F+LL+IR ++
Sbjct: 423 KYRLVKDGKEFHINACKPQATNNLLIDNLLTANQAKRLVNSCGRFVLLMIRPQDQ 477
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 414 bits (1063), Expect(2) = 0.0
Identities = 236/595 (39%), Positives = 336/595 (56%), Gaps = 2/595 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F G + R+F+R FSTIA L+ LT F+ + E AFQ LK+++SE P+L LP
Sbjct: 952 KSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLP 1011
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ TFEVE DAS +GGVL+Q+G+PV Y SE A NY+ YDKE Y+L + ++ W+
Sbjct: 1012 DFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQ 1071
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+YL Q KL + RH K + ++ TF +++YKKG N +AD LS
Sbjct: 1072 HYLWPKEFVIHSDHEALKYLKGQAKLNR-RHAKWVEFIETFPYVVKYKKGKENIVADALS 1130
Query: 2464 RPPVRALMVSMRIQPIVPQEYAESY-AXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQLL 2640
R V + +++ I + E Y A +Y + DG L++ L
Sbjct: 1131 RKNVLLNQLEVKVTGI--ESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKL 1188
Query: 2641 CIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTSK 2820
C+P RL L+E H + GHFG KT L + +W KM+ DV +LV+ C +K
Sbjct: 1189 CVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAK 1248
Query: 2821 PSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKTV 3000
GLY PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1249 SKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSD 1308
Query: 3001 MGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDGQ 3180
+ LFF + + G+P +I+SDRD++FLS+F +LW + +RL +TT HPQTDGQ
Sbjct: 1309 DASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQ 1368
Query: 3181 TEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPFD 3360
TEVVNRT+ +LR K+ K W+E LP++ FA+N AVHS++ PFE G+ P SP D
Sbjct: 1369 TEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPID 1428
Query: 3361 LVFSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCNFGV 3540
L + + +E S+ +A K + +IH + ++K Y A +K+ F
Sbjct: 1429 L-----LPLPLQERSD-MEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTFEP 1482
Query: 3541 GD-XXXXXXXXXXXXXXXXXXXXXXYGPFRILDQIGNNAFRLDLPPYLGMYSVIN 3702
GD GPFR+L +I +NA++++LP G+ S N
Sbjct: 1483 GDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSSTFN 1537
Score = 278 bits (712), Expect(2) = 0.0
Identities = 134/269 (49%), Positives = 188/269 (69%), Gaps = 2/269 (0%)
Frame = +2
Query: 1145 KYKDPFSDVT--GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGM 1318
+Y+D F + T GLPP R +EH+I L ++LPN YRT EE+ EI++QVQ LL+ G
Sbjct: 690 EYEDVFPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNPEETKEIQRQVQALLDKGY 749
Query: 1319 IVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTK 1498
+ S SP V+LVPKKDG WRMC+D RA+N IT++ R+P+PR+DDM+D+L +F+K
Sbjct: 750 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPRLDDMLDELSGSMIFSK 809
Query: 1499 LDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYF 1678
+D + +H +R++ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN ++R FI F
Sbjct: 810 IDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKF 869
Query: 1679 AIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQR 1858
+VY DDILIY +T EEH+ H ++V VL + QL N++ C F +++V+LGF+V G
Sbjct: 870 VVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGI 929
Query: 1859 KIDPKKVEVITKWARPSTVTEIRSS*GLA 1945
++D KV+ I W P V++++S GLA
Sbjct: 930 QVDESKVKAIKDWPTPENVSQVKSFRGLA 958
Score = 82.4 bits (202), Expect = 4e-12
Identities = 43/114 (37%), Positives = 65/114 (57%)
Frame = +2
Query: 593 REQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLKTNKHPKRCPLGWLQKEGGLQ 772
R LF +V+ +V V+ID GS NL S +V+KLGLK KHP + WL G ++
Sbjct: 463 RHNLFQTRAKVQDKVVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIK 522
Query: 773 VSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWDRDANLQRREQKYTL 934
++Q+ F + E ID + CDV P+ VC ++ G P+ +DR + R +YT+
Sbjct: 523 IAQRVKVPFKIGEY-IDTMECDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYTI 575
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 421 bits (1082), Expect(2) = 0.0
Identities = 239/604 (39%), Positives = 340/604 (56%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R+F+R FSTIA L+ +T F E+AF +LK K++ AP+L+LP
Sbjct: 993 RSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLP 1052
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
N + TFE+E DAS LGGVLLQDGKPV Y SE FS NY+ YDKE Y+L + ++ W+
Sbjct: 1053 NFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLETWQ 1112
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ TF +I++KKG N +AD LS
Sbjct: 1113 HYLWPKEFVIHSDHESLKHIKSQAKLNR-RHAKWVEFIETFPYVIKHKKGKENVIADALS 1171
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + +Y N++ L DG +++
Sbjct: 1172 RRYTMLSQLDFKIFGLETIKDQYVHD---AEFKDVLQNCKEGRTWNKFVLNDGFVFRANK 1228
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP RL L+EAH + GHFG+ KT L + FW KM+ DV + V C +
Sbjct: 1229 LCIPASSVRLLLLQEAHGGGLMGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRA 1288
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1289 KSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS 1348
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
+ LFF+ + + G+P +I+SDRD++FLSHF LW + ++L +TT HPQTDG
Sbjct: 1349 DDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDG 1408
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNRT+ MLR + K W+E LP++ FA+N ++HS++ PFE G+LP +P
Sbjct: 1409 QTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPI 1468
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ KE S E I +IH + +++ +KYK DK
Sbjct: 1469 DLLPLPSSEKVNFDAKERS---------ELILKIHELTKENIERMNAKYKLARDKGRKHV 1519
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L++I +NA++L+LP G+ N
Sbjct: 1520 VFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDNAYKLELPADFGVSPTFNI 1579
Query: 3706 EYLK 3717
LK
Sbjct: 1580 ADLK 1583
Score = 264 bits (674), Expect(2) = 0.0
Identities = 130/257 (50%), Positives = 174/257 (67%)
Frame = +2
Query: 1175 GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAV 1354
GLPP R +EH+I L +SLPN YRT EE+ EI +QVQELL+ G I S SP +
Sbjct: 743 GLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPI 802
Query: 1355 LLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRV 1534
+LVPKKDG RMC+D R +N ITI+ R+P+PR+DDM+D+L +F+K+D + YH +R+
Sbjct: 803 ILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGYHQIRM 862
Query: 1535 QEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYD 1714
+ D WKT FKTK GL+EWLVMPFGL NA +TFM LMN+++R FI F +VY DDILIY
Sbjct: 863 KLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 922
Query: 1715 RTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITK 1894
++ EEHL H VF L + +L N+ C F + + +LG++V ++D K+E I
Sbjct: 923 KSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIES 982
Query: 1895 WARPSTVTEIRSS*GLA 1945
W P TVT++RS GLA
Sbjct: 983 WPHPKTVTQVRSFLGLA 999
Score = 72.4 bits (176), Expect = 4e-09
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 18/206 (8%)
Frame = +2
Query: 386 CTHCKQTGHVVDKCWVKNPHLKPK--GLQRKESRKAALVAQTPKGVHGLTEPNSKLSLMT 559
C CK GH +C K + + G + +A + HG + + + M
Sbjct: 417 CRRCKGGGHYARECPSKRVMIVSEDGGYESASDYDEETLALITRDKHGGDDSDHETQYMA 476
Query: 560 ----------------GAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSL 691
+ ++ + R LF VK V V+ID GS NL S +
Sbjct: 477 PEDADRYECLVAQRVLSVQVTQAEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEM 536
Query: 692 VQKLGLKTNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVP 871
V+KL L T HP + W G ++V++ F++ + D V CDVVP+ C ++
Sbjct: 537 VEKLSLITRPHPHPYYIQWFNNSGKVKVTRTVRVHFSI-STYADYVDCDVVPMQACSLLL 595
Query: 872 GSPYLWDRDANLQRREQKYTLPKMEK 949
G P+ +D+++ R+ YTL +K
Sbjct: 596 GRPWQFDKNSVHHDRKNLYTLVHKDK 621
>ref|XP_007219089.1| hypothetical protein PRUPE_ppa015100mg, partial [Prunus persica]
gi|462415551|gb|EMJ20288.1| hypothetical protein
PRUPE_ppa015100mg, partial [Prunus persica]
Length = 641
Score = 379 bits (973), Expect(2) = 0.0
Identities = 181/265 (68%), Positives = 216/265 (81%)
Frame = +2
Query: 1136 LKLKYKDPFSDVTGLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELG 1315
L+ K+KD F DV GLPP R++EHEI L G+S LPN+GLYRT++ ES+EIKKQ+Q LLE G
Sbjct: 127 LQEKFKDLFHDVQGLPPQRAIEHEIQLVGDSPLPNLGLYRTSLMESDEIKKQIQGLLEQG 186
Query: 1316 MIVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFT 1495
+I PS SP GS VLLVPKKDGGWRM +DYRALNKITIKNRYPLPRIDD++DQL FT
Sbjct: 187 VIKPSCSPCGSPVLLVPKKDGGWRMYVDYRALNKITIKNRYPLPRIDDLLDQLHGAHYFT 246
Query: 1496 KLDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEY 1675
KLD K YH +R+ E+DTWKTAFKTKQGLFEWLVMPFGLCNA ATFM LMN+++RPFI+
Sbjct: 247 KLDLKSGYHQVRIHEEDTWKTAFKTKQGLFEWLVMPFGLCNAPATFMRLMNEVLRPFIDD 306
Query: 1676 FAIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQ 1855
F IVYLDDILI+ TWE+HL H +V +VL QL+LN K CEFGK+ LVYLGFIVG G+
Sbjct: 307 FVIVYLDDILIFSVTWEDHLHHIAQVLEVLRTNQLQLNGKKCEFGKQHLVYLGFIVGAGE 366
Query: 1856 RKIDPKKVEVITKWARPSTVTEIRS 1930
K++ +KV VI++W P +VTE+RS
Sbjct: 367 LKMNLEKVHVISQWPTPRSVTEVRS 391
Score = 306 bits (783), Expect(2) = 0.0
Identities = 149/246 (60%), Positives = 182/246 (73%), Gaps = 3/246 (1%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F+GAC YLRKFIRHFS IA LH LT A KFE + HE++FQLLKRKI+EAPVL LP
Sbjct: 390 RSFIGACQYLRKFIRHFSQIAAPLHSLTKANQKFEWSRNHEESFQLLKRKITEAPVLALP 449
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
N+ F+VE DASNYA+G VL QDGKPV YHSE+FS + NY YDKE Y+++Q +KHWR
Sbjct: 450 NLQKPFDVEADASNYAMGAVLFQDGKPVAYHSEMFSGPVLNYPTYDKELYAMHQAVKHWR 509
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+LGK VVVH+D KPL++L Q+KLQ ARHMK MSYL FNI+I+YKKG TNKLADMLS
Sbjct: 510 AYLLGKEVVVHSDPKPLQFLTTQSKLQHARHMKWMSYLQQFNIVIKYKKGTTNKLADMLS 569
Query: 2464 RPPV---RALMVSMRIQPIVPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQ 2634
RPP AL+V+++IQPIVP EYA+ Y +E++L+DGL+YKG
Sbjct: 570 RPPTPVSSALLVAIQIQPIVPSEYAKGYDTDTDFNSAYAKLQQGKTSEFQLKDGLMYKGT 629
Query: 2635 LLCIPE 2652
LCIP+
Sbjct: 630 QLCIPD 635
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 395 bits (1016), Expect(2) = 0.0
Identities = 227/599 (37%), Positives = 333/599 (55%), Gaps = 5/599 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F G + R+F++ FST+A L + F+ ++ EDAFQ LK K++ APVL LP
Sbjct: 1141 RSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLP 1200
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ TFE+E DAS +G VL+QD KP+ Y SE A NY YDKE Y+L + ++ +
Sbjct: 1201 DFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQTGQ 1260
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H DH+ L++L Q KL + RH + + ++ TF +I+YKKG N +AD LS
Sbjct: 1261 HYLWPKEFVIHTDHESLKHLKGQQKLNK-RHARWVEFIETFPYVIKYKKGKDNVVADALS 1319
Query: 2464 RPPVRALMVSMRIQPIVPQEYAES-YAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQLL 2640
R R +++S ++ E+ +S YA +Y DG L+ L
Sbjct: 1320 R---RYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRL 1376
Query: 2641 CIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTSK 2820
CIP R ++REAH + GHFG++KT+ + + W M+ DV ++ C +K
Sbjct: 1377 CIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAK 1436
Query: 2821 PSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKTV 3000
+ GLY PLP+PS PW ISMDF+ GLP+T++G D +FVVVDR SKM IPC KT
Sbjct: 1437 AKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTD 1496
Query: 3001 MGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDGQ 3180
LFF+ V + G+P +I+SDRD++FLS+F +LW + ++L +TT HPQTDGQ
Sbjct: 1497 DAIHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQ 1556
Query: 3181 TEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPFD 3360
TEVVNRT+ +LR K+ KTW++ LP++ FA+N ++HS+S SPF+ G+ P +P D
Sbjct: 1557 TEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLD 1616
Query: 3361 LV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCN 3531
L+ S +S+ GK K E + QIH + +++ +Y +K
Sbjct: 1617 LMPLPLSERVSLDGK---------KKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVI 1667
Query: 3532 FGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L +I NNA+ LDL G Y+V N+
Sbjct: 1668 FNEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLKRINNNAYSLDLQ---GKYNVSNS 1723
Score = 285 bits (728), Expect(2) = 0.0
Identities = 139/263 (52%), Positives = 183/263 (69%)
Frame = +2
Query: 1157 PFSDVTGLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSAS 1336
P + GLPP R +EH+I +SLPN YRT E+ E++KQV EL+E G I S S
Sbjct: 885 PEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHIRESMS 944
Query: 1337 PYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFR 1516
P VLLVPKKDG WRMC+D RA+N IT+K R+P+PR+DDM+D+L +F+K+D K
Sbjct: 945 PCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSG 1004
Query: 1517 YHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLD 1696
YH +R++E D WKTAFKT QGL+EWLVMPFGL NA +TFM LMN ++R FI F IVY D
Sbjct: 1005 YHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFD 1064
Query: 1697 DILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKK 1876
DIL+Y ++ EEH+ H + V +VL + +L N+K C FG + LV+LGF+V K+D +K
Sbjct: 1065 DILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKVDEEK 1124
Query: 1877 VEVITKWARPSTVTEIRSS*GLA 1945
V+ I +W P +V E+RS GLA
Sbjct: 1125 VKAIREWPSPKSVGEVRSFHGLA 1147
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 408 bits (1048), Expect(2) = 0.0
Identities = 233/604 (38%), Positives = 342/604 (56%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R+F++ FSTIA L+ LT F + E+AF +LK K++ AP+L+LP
Sbjct: 949 RSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLP 1008
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE+E DAS LGGVLLQ+GKPV Y SE S + NY+ YDKE Y+L + ++ W+
Sbjct: 1009 DFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQ 1068
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ +F +I++KKG N +AD LS
Sbjct: 1069 HYLWPKEFVIHSDHESLKHIRSQGKLNR-RHAKWVEFIESFPYVIKHKKGKENIIADALS 1127
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + +YA N++ + DG +++
Sbjct: 1128 RRYTLLTQLDYKIFGLETIKDQYAHD---ADFNDVLLHCKDGRTWNKFVINDGFVFRANK 1184
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP RL L+EAH + GHFG KT L + FW +M+ DV + V C +
Sbjct: 1185 LCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKA 1244
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVP+ PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC KT
Sbjct: 1245 KSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKT 1304
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
+ LFF+ + + G+P +I+SDRD++FLSHF +LW + ++L +TT HPQTDG
Sbjct: 1305 DDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDG 1364
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNRT+ MLR K+ K W+E LP++ FA+N ++HS++ PF+ G LP +P
Sbjct: 1365 QTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPI 1424
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ K Q+A+ L ++H T + +++ +KYK DK
Sbjct: 1425 DLMPLPSSEKLNFDAK-----QRAELML----KLHETTKENIERMNAKYKFAGDKGRREL 1475
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L +I NA+++DLP G+ N
Sbjct: 1476 TFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNV 1535
Query: 3706 EYLK 3717
LK
Sbjct: 1536 ADLK 1539
Score = 271 bits (694), Expect(2) = 0.0
Identities = 135/269 (50%), Positives = 181/269 (67%), Gaps = 2/269 (0%)
Frame = +2
Query: 1145 KYKDPFSDVT--GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGM 1318
+Y D F GLPP R +EH+I L +SLPN YRT EE+ EI++QV ELL+ G
Sbjct: 687 EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 746
Query: 1319 IVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTK 1498
+ S SP V+LVPKKDG WRMC+D RA+N ITI+ R+P+PR+DDM+D+L VF+K
Sbjct: 747 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 806
Query: 1499 LDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYF 1678
+D + YH +R++ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN+++RPFI F
Sbjct: 807 VDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKF 866
Query: 1679 AIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQR 1858
+VY DDILIY ++ EH H VF L + +L N++ C F + + +LG++V
Sbjct: 867 VVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGI 926
Query: 1859 KIDPKKVEVITKWARPSTVTEIRSS*GLA 1945
++D KVE I W P TV+++RS GLA
Sbjct: 927 EVDQAKVEAIQSWPTPKTVSQVRSFLGLA 955
Score = 268 bits (686), Expect(2) = 2e-93
Identities = 195/633 (30%), Positives = 292/633 (46%), Gaps = 35/633 (5%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG Y R+FI +FS IA + L + KF E AFQ LK K+ +PVL LP
Sbjct: 1741 RSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILP 1800
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ F V DAS LG VL+Q+G V Y S NY +D E ++ +K WR
Sbjct: 1801 DTRKDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWR 1860
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y++G ++ DHK L+Y+ Q+ L R + + + +++ I Y G N +AD LS
Sbjct: 1861 HYLIGNRCEIYTDHKSLKYIFTQSDLN-LRQRRWLELIKDYDVGIHYHPGKANVVADALS 1919
Query: 2464 R------------PPV--------------RALMVSMRIQPIVPQEYAESYAXXXXXXXX 2565
R PP R + ++ +P + + E+
Sbjct: 1920 RKSHCNTLGVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQIREAQKNDPDMRGL 1979
Query: 2566 XXXXXXXXXNEY-ELRDGLLYKGQLLCIPEYGDRLQW-LREAHTSQVAGHFGMNKTLLNL 2739
+ E G L+ +C+P+ + Q L+EAH S + H G K L+L
Sbjct: 1980 LKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDL 2039
Query: 2740 *RYVFWAKMQDDVAKLVRGYKLCSTSKPSNMT-RGLYLPLPVPSRPWESISMDFLGGLPK 2916
+W M+ ++A+ V +C K + GL PL VP W+ I MDF+ GLPK
Sbjct: 2040 KEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPK 2099
Query: 2917 TKSGHDYLFVVVDRLSKMIALIPCTKTVMGADAGKLFFKHVWKHFGLPTSILSDRDSRFL 3096
T+ G+D ++VVVDRL+K+ IP T G +L+F + G+P I+SDR+S+F
Sbjct: 2100 TQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFT 2159
Query: 3097 SHF*DSLWKMMDSRLKKNTTFHPQTDGQTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*F 3276
SHF L + + +RL +T +HPQTDGQTE +N+ + ML KTWD+SLPY F
Sbjct: 2160 SHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEF 2219
Query: 3277 AFNIAVHSSSWKSPFETCNGYLPPSP--FDLVFSSDISMGGKEGSE*QKAQKFLEKISQI 3450
++N + +S +P+E G +P +D V S + L +
Sbjct: 2220 SYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVF-----------GTDILREAEAK 2268
Query: 3451 HATVEAQLKKSQSKYKAKHDKHLVPCNFGVGD---XXXXXXXXXXXXXXXXXXXXXXYGP 3621
T+ LK +QS+ K+ D F V D GP
Sbjct: 2269 VRTIWDNLKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRFVGP 2328
Query: 3622 FRILDQIGNNAFRLDLPPYLG-MYSVINAEYLK 3717
FRI+ + G A++L+LP LG ++ V + LK
Sbjct: 2329 FRIIARRGEVAYQLELPASLGNVHDVFHVSQLK 2361
Score = 106 bits (264), Expect(2) = 2e-93
Identities = 52/123 (42%), Positives = 75/123 (60%)
Frame = +2
Query: 1577 GLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYDRTWEEHLVHAEKVF 1756
GL+E+ VM FGL NA A FM LMN + +++ F +V++DDIL+Y ++ E+H H V
Sbjct: 1625 GLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVL 1684
Query: 1757 KVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITKWARPSTVTEIRSS* 1936
L E QL + CEF E+ +LG ++ +DP+ V +T W +P TVT+IRS
Sbjct: 1685 GKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFL 1744
Query: 1937 GLA 1945
GLA
Sbjct: 1745 GLA 1747
Score = 75.5 bits (184), Expect = 4e-10
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Frame = +2
Query: 386 CTHCKQTGHVVDKC------WVKNPHLKPKGLQRKESRKAALVA-----QTPKGVHGLTE 532
C CK GHV C VKN + A L A + P+ G
Sbjct: 392 CHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAF 451
Query: 533 PNSKLSLMT----GAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQK 700
+ SL+ A+ ++ + R LF VK ++ID GS NL S+ +V+K
Sbjct: 452 ADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEK 511
Query: 701 LGLKTNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSP 880
L L T HP + WL G +V++ FA+ D V CDVVP+ C ++ G P
Sbjct: 512 LALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNY-HDVVECDVVPMQACNILLGRP 570
Query: 881 YLWDRDANLQRREQKYT 931
+ +DRD+ R +Y+
Sbjct: 571 WQFDRDSMHHGRSNQYS 587
>ref|XP_013749392.1| PREDICTED: uncharacterized protein LOC106451942 [Brassica napus]
Length = 1733
Score = 389 bits (999), Expect(2) = 0.0
Identities = 224/602 (37%), Positives = 332/602 (55%), Gaps = 5/602 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F G + R+F++ FSTIA L + F+ ++T E+AFQ+LK K++ AP+L LP
Sbjct: 943 RSFHGLAGFYRRFVQDFSTIAAPLTEVIKKNVGFKWEQTQEEAFQILKGKLTHAPLLTLP 1002
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ TFE+E DAS +G VL+QD KP+ Y SE A NY YDKE Y+L + ++ W+
Sbjct: 1003 DFSKTFEIECDASGVGIGAVLMQDRKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQ 1062
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H DH+ L++L Q KL + RH + + ++ TF +I+YK+G N +AD LS
Sbjct: 1063 HYLWPKEFVIHTDHQSLKHLKGQQKLNK-RHARWVEFIETFPYVIKYKQGKDNVVADALS 1121
Query: 2464 RPPVRALMVSMRIQPIVPQEYAES-YAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQLL 2640
+ R +++S ++ E+ + YA +Y G L+ L
Sbjct: 1122 K---RYVLLSALETKLLGFEFIKDLYATDSDFKEVFIKCSKTAYGKYYQASGFLFFDNRL 1178
Query: 2641 CIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTSK 2820
C+P+ R +LREAH + GHFG+ KT + + +W + DV ++ +C +K
Sbjct: 1179 CVPQCSLRELFLREAHGGGLMGHFGVKKTHKVVNEHFYWPSLMKDVERVCGRCVVCKKAK 1238
Query: 2821 PSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKTV 3000
+ +GLY LP+PS PW ISMDF+ GLP++KSG D +FVVVDR SKM IPC KT
Sbjct: 1239 SKSKNQGLYSALPIPSHPWVDISMDFVLGLPRSKSGRDSIFVVVDRFSKMAHFIPCHKTN 1298
Query: 3001 MGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDGQ 3180
LFF+ + + G+P +I+SDRD++FLS+F +LW + +RL +TT HPQTDGQ
Sbjct: 1299 DAVQVADLFFREIVRLHGMPKTIVSDRDAKFLSYFWKTLWSKLGTRLMFSTTCHPQTDGQ 1358
Query: 3181 TEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPFD 3360
TEVVNRT+ +LR K+ + W+E LP++ FA+N ++HSS+ SPFE G+ P SP D
Sbjct: 1359 TEVVNRTLSALLRSLVKKNLRLWEECLPHVEFAYNHSLHSSTKFSPFEVVYGFNPLSPLD 1418
Query: 3361 LV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCN 3531
L+ S +S GK + + I ++H TV A ++ Y K +K
Sbjct: 1419 LLPLPLSERVSTDGKRKA---------DTIKKLHETVRANIEAKTEVYTRKANKKKKKVI 1469
Query: 3532 FGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINAE 3708
F GD GPF+IL +I +NA++LDL + S N
Sbjct: 1470 FEEGDLVWVHLRKERFPEERKSKLMPRVDGPFQILKKIQDNAYQLDLQGKYDISSSFNVS 1529
Query: 3709 YL 3714
L
Sbjct: 1530 DL 1531
Score = 288 bits (737), Expect(2) = 0.0
Identities = 140/273 (51%), Positives = 188/273 (68%), Gaps = 2/273 (0%)
Frame = +2
Query: 1133 DLKLKYKDPFSDVT--GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELL 1306
D+ + D FSD GLPP R +EH+I +SLPN YRT E+ E++KQV +LL
Sbjct: 677 DILQDFSDVFSDENPKGLPPVRGIEHQIDFVPGASLPNRPAYRTNPVETKELQKQVGDLL 736
Query: 1307 ELGMIVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVR 1486
E G I S SP VLLVPKKDG WRMC+D RA+N IT+K R+P+PR+DDM+D+L
Sbjct: 737 EKGHIRESLSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSS 796
Query: 1487 VFTKLDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPF 1666
VF+K+D K YH +R++E D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN ++R F
Sbjct: 797 VFSKIDLKSGYHQIRMKEGDEWKTAFKTKLGLYEWLVMPFGLTNAPSTFMRLMNHILRSF 856
Query: 1667 IEYFAIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVG 1846
I +F +VY DDILIY + ++H +H + V VL + +L N++ C FG + +V+LGF+VG
Sbjct: 857 IGHFVVVYFDDILIYSKNLDDHKIHLKSVLDVLRKEKLFANLEKCSFGTDHVVFLGFVVG 916
Query: 1847 GGQRKIDPKKVEVITKWARPSTVTEIRSS*GLA 1945
++D +K++ I W P+TV E+RS GLA
Sbjct: 917 SDGLRVDEEKIKAIRDWPSPTTVGEVRSFHGLA 949
Score = 66.6 bits (161), Expect = 2e-07
Identities = 36/110 (32%), Positives = 60/110 (54%)
Frame = +2
Query: 572 RPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLKTNKHPKRCPLGWL 751
+ ++ + RE LF + + ++ID GS N+ S++LV+KLGL T + L WL
Sbjct: 468 KTNEKEQRENLFHSRCLISEKVCSLIIDGGSCTNVASDTLVRKLGLATRPLSRPFRLEWL 527
Query: 752 QKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWDRDA 901
+ G V +Q T + DEV C+V+P+D C ++ G P+ +D+ A
Sbjct: 528 NETGEQYVKEQVTIPLTIGRY-EDEVVCNVLPMDACHILLGRPWQFDKRA 576
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 404 bits (1038), Expect(2) = 0.0
Identities = 230/604 (38%), Positives = 336/604 (55%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R+F++ FSTIA LH LT F +AF LK K++ AP+L+LP
Sbjct: 977 RSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLP 1036
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE+E DAS LGGVLLQ+GKP+EY SE S NY+ YDKE ++L + ++ W+
Sbjct: 1037 DFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQ 1096
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ +F +I++KKG N +AD LS
Sbjct: 1097 HYLWPKEFVIHSDHESLKHIRSQAKLNR-RHAKWVEFIESFPYVIKHKKGKENVIADALS 1155
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + ++YA N++ L +G +++
Sbjct: 1156 RRYAMLSQLDFKIFGLETIKEQYAHD---DDFKDVLLNCKEGRTWNKFVLTNGFVFRANK 1212
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP R+ L+EAH + GHFG+ KT L + FW KM+ DV + V C +
Sbjct: 1213 LCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKA 1272
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1273 KLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS 1332
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
LFF+ + + G+P +I+SDRD++FLSHF +LW + ++L +TT HPQTDG
Sbjct: 1333 DDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDG 1392
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNRT+ MLR K+ K W+E LP++ FA+N + HS++ K PFE G LP +P
Sbjct: 1393 QTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPI 1452
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ K + E + ++H T + +++ KYK K
Sbjct: 1453 DLLPLPTSERVNFDAKYHA---------ELMLKLHETTKENIERMNIKYKLAGSKGKKHV 1503
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L +I +N ++L+LP G+ N
Sbjct: 1504 AFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNTYKLELPADFGVSPTFNI 1563
Query: 3706 EYLK 3717
LK
Sbjct: 1564 ADLK 1567
Score = 270 bits (690), Expect(2) = 0.0
Identities = 133/257 (51%), Positives = 179/257 (69%)
Frame = +2
Query: 1175 GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAV 1354
GLPP R +EH+I L +SLPN YRT EE+ EI++QVQELL+ G + S SP V
Sbjct: 727 GLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSIPV 786
Query: 1355 LLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRV 1534
LLVPKKDG WRMC+D RA+N ITI+ R+P+PR+DDM+D+L VF+K+D + YH +R+
Sbjct: 787 LLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRM 846
Query: 1535 QEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYD 1714
+ D WKTAFKTK GL+EWLVMPFGL NA +TF+ LMN+++R FI F +VY DDILIY
Sbjct: 847 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIYS 906
Query: 1715 RTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITK 1894
R+ E+H H VF L + +L N++ C F + + +LG++V ++D KVE I
Sbjct: 907 RSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHS 966
Query: 1895 WARPSTVTEIRSS*GLA 1945
W P+T+T++RS GLA
Sbjct: 967 WPVPTTITQVRSFLGLA 983
Score = 71.6 bits (174), Expect = 6e-09
Identities = 38/113 (33%), Positives = 60/113 (53%)
Frame = +2
Query: 563 AKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLKTNKHPKRCPL 742
A+ ++ + R LF +K V+ID GS NL S +V+KL L T HP+ +
Sbjct: 477 AQMERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYI 536
Query: 743 GWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWDRDA 901
WL G ++V++ FA+ S D + CDVVP+ C + G P+ +D+D+
Sbjct: 537 QWLNSSGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQACSIFLGRPWQFDKDS 588
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 408 bits (1048), Expect(2) = 0.0
Identities = 231/604 (38%), Positives = 339/604 (56%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R+F+R FSTIA L+ LT + E+AF +LK K++ AP+L+LP
Sbjct: 1008 RSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLP 1067
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE+E DAS LGGVLLQDGKPV Y SE S NY+ YDKE Y+L + ++ W+
Sbjct: 1068 DFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQ 1127
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ TF +I++KKG N +AD LS
Sbjct: 1128 HYLWPKEFVIHSDHESLKHIKSQAKLNR-RHAKWVEFIETFPYVIKHKKGKDNVIADALS 1186
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + +Y N++ + +G +++
Sbjct: 1187 RRYTMLSQLDFKIFGLETIKDQYVHD---ADFKDVLENCREGRTWNKFIINNGFVFRANK 1243
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP RL L+EAH + GHFG+ K L + FW +M+ DV + V C +
Sbjct: 1244 LCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKA 1303
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1304 KSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS 1363
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
A+ LFF+ + + G+P +I+SDRD++FLSHF LW + ++L +TT HPQTDG
Sbjct: 1364 DDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDG 1423
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNR++ MLR + K W+E LP++ FA+N ++HS++ PFE G+LP +P
Sbjct: 1424 QTEVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPI 1483
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ KE + E I ++H + +++ ++YK DK
Sbjct: 1484 DLLPIPSSEKVNFDAKERA---------ELILKMHELTKENIERMNARYKLAGDKGRKHV 1534
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L++I +NA+RL+LP G+ N
Sbjct: 1535 VFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPADFGVSPTFNI 1594
Query: 3706 EYLK 3717
LK
Sbjct: 1595 ADLK 1598
Score = 264 bits (674), Expect(2) = 0.0
Identities = 130/257 (50%), Positives = 175/257 (68%)
Frame = +2
Query: 1175 GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAV 1354
GLPP R +EH+I L +SLPN YRT EE+ EI +QVQELL+ G I S SP +
Sbjct: 758 GLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPI 817
Query: 1355 LLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRV 1534
+LVPKKDG RMC+D R +N ITI+ R+P+PR+DDM+D+L +F+K+D + YH +R+
Sbjct: 818 ILVPKKDGTSRMCVDCRGINNITIRXRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRM 877
Query: 1535 QEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYD 1714
+ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN+++R FI F +VY DDILIY
Sbjct: 878 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 937
Query: 1715 RTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITK 1894
R+ E+HL H VF L + +L N+ C F + + +LG++V ++D K+E I
Sbjct: 938 RSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIES 997
Query: 1895 WARPSTVTEIRSS*GLA 1945
W +P TVT++RS G A
Sbjct: 998 WPQPKTVTQVRSFLGXA 1014
Score = 72.4 bits (176), Expect = 4e-09
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 18/201 (8%)
Frame = +2
Query: 386 CTHCKQTGHVVDKCWVKNPHLKPK-----GLQRKESRKAALVAQTPKGVHGLTEPNSKLS 550
C CK GH +C K + + + AL+A +GV + ++
Sbjct: 433 CRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVADTAQETQYMA 492
Query: 551 L-------------MTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSL 691
+ + + + R LF VK V V+ID GS NL S +
Sbjct: 493 ADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEM 552
Query: 692 VQKLGLKTNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVP 871
V+KL L T HP + W G ++V++ F++ + D V CDVVP+ C V+
Sbjct: 553 VEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSI-ATYSDFVDCDVVPMQACSVLL 611
Query: 872 GSPYLWDRDANLQRREQKYTL 934
G P+ +D+++ R +YTL
Sbjct: 612 GRPWQFDKNSVHHGRTNQYTL 632
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 401 bits (1031), Expect(2) = 0.0
Identities = 230/604 (38%), Positives = 334/604 (55%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R+F++ FSTIA LH LT F +AF LK K++ AP+L+LP
Sbjct: 977 RSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLP 1036
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE E DAS LGGVLLQ+GKPV Y SE S NY+ YDKE ++L + ++ W+
Sbjct: 1037 DFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQ 1096
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ +F +I++KKG N +AD LS
Sbjct: 1097 HYLWPKEFVIHSDHESLKHIRSQAKLNR-RHAKWVEFIESFPYVIKHKKGKENVIADALS 1155
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + ++YA N++ L +G +++
Sbjct: 1156 RRYAMLSQLDFKIFGLETIKEQYAHD---DDFKNVLLNCKEGRTWNKFVLTNGFVFRANK 1212
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP R+ L+EAH + GHFG+ KT L + FW KM+ DV + V C +
Sbjct: 1213 LCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKA 1272
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1273 KSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS 1332
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
LFF+ + + G+P +I+SDRD++FLSHF +LW + ++ +TT HPQTDG
Sbjct: 1333 DDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDG 1392
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNRT+ MLR K+ K W+E LP++ FA+N + HS++ K PFE G LP +P
Sbjct: 1393 QTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPI 1452
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ K + E + ++H T + +++ KYK K
Sbjct: 1453 DLLPHPTSERVNFDAKYRA---------ELMLKLHETTKENIERMNIKYKLAGSKGKKHV 1503
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L +I +NA++L+LP G+ N
Sbjct: 1504 AFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNI 1563
Query: 3706 EYLK 3717
LK
Sbjct: 1564 ADLK 1567
Score = 270 bits (690), Expect(2) = 0.0
Identities = 133/257 (51%), Positives = 178/257 (69%)
Frame = +2
Query: 1175 GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAV 1354
GLPP R +EH+I L +SLPN YRT EE+ EI++QVQELL+ G + S SP V
Sbjct: 727 GLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPV 786
Query: 1355 LLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRV 1534
LLVPKKDG WRMC+D RA+N ITI+ R+P+PR+DDM+D+L VF+K+D + YH +R+
Sbjct: 787 LLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRM 846
Query: 1535 QEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYD 1714
+ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN+++R FI F +VY DDILIY
Sbjct: 847 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 906
Query: 1715 RTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITK 1894
R+ E+H H VF L + +L N++ C F + + +L ++V ++D KVE I
Sbjct: 907 RSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHN 966
Query: 1895 WARPSTVTEIRSS*GLA 1945
W P+T+T++RS GLA
Sbjct: 967 WPVPTTITQVRSFLGLA 983
Score = 70.9 bits (172), Expect = 1e-08
Identities = 38/113 (33%), Positives = 61/113 (53%)
Frame = +2
Query: 563 AKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLKTNKHPKRCPL 742
A+ ++ + R LF +K V+ID GS NL S +V+KL L T HP+ +
Sbjct: 477 AQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYI 536
Query: 743 GWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWDRDA 901
WL G ++V++ FA+ S D + CDVVP+ C ++ G P+ +D+D+
Sbjct: 537 QWLNSSGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQACSMLLGRPWQFDKDS 588
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 405 bits (1042), Expect(2) = 0.0
Identities = 231/604 (38%), Positives = 338/604 (55%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R+F+R FSTIA L+ LT + E+AF +LK K++ AP+L+LP
Sbjct: 1005 RSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLP 1064
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE+E DAS LGGVLLQDGKPV Y SE S NY+ YDKE Y+L + ++ W+
Sbjct: 1065 DFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQ 1124
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ TF +I+ KKG N +AD LS
Sbjct: 1125 HYLWPKEFVIHSDHESLKHIKSQAKLNR-RHAKWVEFIETFPYVIKDKKGKDNVIADALS 1183
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + +Y N++ + +G +++
Sbjct: 1184 RRYTMLSQLDFKIFGLETIKDQYVHD---ADFKDVLENCREGRTWNKFIINNGFVFRANK 1240
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP RL L+EAH + GHFG+ K L + FW +M+ DV + V C +
Sbjct: 1241 LCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKA 1300
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1301 KSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS 1360
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
A+ LFF+ + + G+P +I+SDRD++FLSHF LW + ++L +TT HPQTDG
Sbjct: 1361 DDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDG 1420
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNR++ MLR + K W+E LP++ FA+N ++HS++ PFE G+LP +P
Sbjct: 1421 QTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPI 1480
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ KE + E I ++H + +++ ++YK DK
Sbjct: 1481 DLLPIPSSEKVNFDAKERA---------ELILKMHELTKENIERMNARYKLAGDKGRKHV 1531
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L++I +NA+RL+LP G+ N
Sbjct: 1532 VFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPXDFGVSPTFNI 1591
Query: 3706 EYLK 3717
LK
Sbjct: 1592 ADLK 1595
Score = 265 bits (678), Expect(2) = 0.0
Identities = 131/257 (50%), Positives = 176/257 (68%)
Frame = +2
Query: 1175 GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAV 1354
GLPP R +EH+I L +SLPN YRT EE+ EI +QVQELL+ G I S SP +
Sbjct: 755 GLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPI 814
Query: 1355 LLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRV 1534
+LVPKKDG RMC+D R +N ITI+ R+P+PR+DDM+D+L +F+K+D + YH +R+
Sbjct: 815 ILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRM 874
Query: 1535 QEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYD 1714
+ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN+++R FI F +VY DDILIY
Sbjct: 875 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 934
Query: 1715 RTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITK 1894
R+ E+HL H VF L + +L N+ C F + + +LG++V ++D K+E I
Sbjct: 935 RSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIES 994
Query: 1895 WARPSTVTEIRSS*GLA 1945
W +P TVT++RS GLA
Sbjct: 995 WPQPKTVTQVRSFLGLA 1011
Score = 72.8 bits (177), Expect = 3e-09
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 18/201 (8%)
Frame = +2
Query: 386 CTHCKQTGHVVDKCWVKNPHLKPK-----GLQRKESRKAALVAQTPKGVHGLTEPNSKLS 550
C CK GH +C K + + + AL+A +GV + ++
Sbjct: 430 CRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVXDTAQETQYMA 489
Query: 551 L-------------MTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSL 691
+ + + + R LF VK V V+ID GS NL S +
Sbjct: 490 ADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEM 549
Query: 692 VQKLGLKTNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVP 871
V+KL L T HP + W G ++V++ F++ + D V CDVVP+ C V+
Sbjct: 550 VEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSI-ATYSDFVDCDVVPMQACSVLL 608
Query: 872 GSPYLWDRDANLQRREQKYTL 934
G P+ +D+++ R +YTL
Sbjct: 609 GRPWQFDKNSVHHGRTNQYTL 629
>ref|XP_013689613.1| PREDICTED: uncharacterized protein LOC106393458 [Brassica napus]
Length = 2061
Score = 387 bits (995), Expect(2) = 0.0
Identities = 221/586 (37%), Positives = 324/586 (55%), Gaps = 4/586 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F G + R+F++ FST+A L + F+ + E AFQLLK K++++P+L LP
Sbjct: 1464 RSFHGLAGFYRRFVKDFSTLAAPLTEIIKKDVGFKWGEVQEAAFQLLKEKLTQSPLLILP 1523
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ TFE+E DAS +G VL+QD +P+ Y SE S A NYA YDKE Y+L + ++ W+
Sbjct: 1524 DFSKTFEIEWDASGIGIGAVLMQDKRPIAYFSEKLSGATLNYATYDKELYALVRALQTWQ 1583
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H DH+ L+YL Q+KL + RH + + ++ TF +I+YK+G N +AD LS
Sbjct: 1584 HYLWPKEFVIHTDHESLKYLKGQSKLSK-RHARWVEFIETFPYVIKYKQGKENIVADALS 1642
Query: 2464 RPPVRALMVSMRIQPIVPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQLLC 2643
R V L+ ++ + + ++ E Y Y DG L+ LC
Sbjct: 1643 RRYV--LLTTLDAKLLGFEQIKEMYESDPDFQEAYKSCAKYASGHYFRHDGFLFYDNRLC 1700
Query: 2644 IPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTSKP 2823
+P R ++RE H + GHFG+ KTL L + +W M+ DV ++ C +K
Sbjct: 1701 VPNCSLRDLFVREFHGGSLMGHFGIAKTLKVLQDHFYWPHMKRDVGRICGRCTTCKLAKS 1760
Query: 2824 SNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKTVM 3003
GLY PLP+P+ PW ISMDF+ GLP+T++G D +FVVVDR SKM I C KT
Sbjct: 1761 KVQPHGLYTPLPIPTHPWNDISMDFVMGLPRTRTGKDSIFVVVDRFSKMAHFIACNKTDD 1820
Query: 3004 GADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDGQT 3183
LFFK V + G+P +I+SDRD++FLS+F +LW + ++L +TT HPQTDGQT
Sbjct: 1821 ALHVANLFFKEVVRLHGMPRTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQT 1880
Query: 3184 EVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPFDL 3363
EVVNRT+ +LR + K+ K+W++ LP+ FA+N A+HS+S S FE G+ P SP DL
Sbjct: 1881 EVVNRTLGTLLRAFIKKNLKSWEDYLPHCEFAYNHAMHSASKFSTFEIVYGFNPISPLDL 1940
Query: 3364 VFSSD---ISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCNF 3534
+ + +SM GK K E + QIH + L+ +Y + +K F
Sbjct: 1941 IPLPECERVSMDGK---------KKAEMVQQIHEQAKRNLEDKTKQYAKQANKGRREMIF 1991
Query: 3535 GVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDL 3669
VGD GPF + +I +NA++LDL
Sbjct: 1992 EVGDQVWVHLRKERFPKERKSKLMPRINGPFEVTKRINDNAYKLDL 2037
Score = 283 bits (723), Expect(2) = 0.0
Identities = 138/269 (51%), Positives = 184/269 (68%), Gaps = 2/269 (0%)
Frame = +2
Query: 1145 KYKDPFSDVT--GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGM 1318
+Y D F D + GLPP R +EH+I +LPN YRT E+ E++KQV+EL+E G
Sbjct: 1202 EYADVFPDDSPIGLPPVRGIEHQIDFVPGCTLPNRPAYRTNPVETKELQKQVEELMEKGH 1261
Query: 1319 IVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTK 1498
I S SP VLLVPKKDG WRMC+D RA+N IT+K R+P+PR+DDM+D+L +F+K
Sbjct: 1262 IRESLSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFSK 1321
Query: 1499 LDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYF 1678
+D K YH +R++E D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN ++R FI F
Sbjct: 1322 IDLKSGYHQIRMKEGDEWKTAFKTKHGLYEWLVMPFGLTNAPSTFMRLMNHILRSFIGIF 1381
Query: 1679 AIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQR 1858
+VY DDIL+Y + E+H+ H V VL + +L N+K C F + LV+LGF+V
Sbjct: 1382 VVVYFDDILVYSKCLEDHIEHLRAVLDVLRKEKLYANLKKCTFCTDNLVFLGFVVSADGV 1441
Query: 1859 KIDPKKVEVITKWARPSTVTEIRSS*GLA 1945
K+D +K++ I +W P+TV E+RS GLA
Sbjct: 1442 KVDQEKIKAIQEWPSPTTVGEVRSFHGLA 1470
Score = 82.0 bits (201), Expect = 5e-12
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Frame = +2
Query: 386 CTHCKQTGHVVDKCWVKNPHL-----------KPKGLQRKESRKAALVAQTPKGVHGLTE 532
C C+ GH ++C KN + + G +ES + + V + KG +T
Sbjct: 927 CFKCQGRGHYANECTNKNVMILLENGEYESEEEKFGSDHEESEEESEV-EPVKGRLLVTR 985
Query: 533 PNSKLSLMTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLK 712
L G E+ RE LF V+ + ++ID GS N+ S ++V+KLGLK
Sbjct: 986 RLLNLQAKNGELEQ------RENLFYTRCMVQGKVCSLIIDGGSCVNVASETMVKKLGLK 1039
Query: 713 TNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWD 892
KHP+ L WL +EG ++VS Q A+ DEV CDV+P++ ++ G P+ +D
Sbjct: 1040 IQKHPRSYRLQWLNEEGEMRVSTQVLVPIAIGRY-EDEVLCDVLPMEASHILLGRPWQYD 1098
Query: 893 R 895
R
Sbjct: 1099 R 1099
>ref|XP_013669253.1| PREDICTED: uncharacterized protein LOC106373656 [Brassica napus]
Length = 1885
Score = 382 bits (982), Expect(2) = 0.0
Identities = 222/602 (36%), Positives = 329/602 (54%), Gaps = 5/602 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F G + R+F++ FSTIA L + F+ ++ E+AFQ+LK K++ AP+L LP
Sbjct: 943 RSFHGLAGFYRRFVQDFSTIAAPLTEVIKKNVGFKWEQAQEEAFQILKGKLTHAPLLTLP 1002
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ TFE+E DAS +G VL+QD KP+ Y SE A NY YD+E Y+L + ++ W+
Sbjct: 1003 DFSKTFEIECDASGVGIGAVLMQDRKPIAYFSEKLGGATLNYPTYDQELYALVRALQTWQ 1062
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H DH+ L++L Q KL + RH + + ++ TF +I+YK+G N +AD LS
Sbjct: 1063 HYLWPKEFVIHTDHQSLKHLKGQQKLNK-RHARWVEFIETFPYVIKYKQGKDNVVADALS 1121
Query: 2464 RPPVRALMVSMRIQPIVPQEYAES-YAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQLL 2640
R R +++S ++ E+ + YA +Y G L+ L
Sbjct: 1122 R---RYVLLSALETKLLGFEFIKDLYATDSDFKEVFIKCSKTAYGKYYQASGFLFFDNRL 1178
Query: 2641 CIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTSK 2820
C+P+ R +LREAH + GHFG+ KT + + +W + DV ++ +C +K
Sbjct: 1179 CVPQCSLRELFLREAHGGGLMGHFGVKKTHKVVNEHFYWPSLMKDVERICGRCVVCKKAK 1238
Query: 2821 PSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKTV 3000
+ +GLY LP+PS PW ISMDF+ GLP++KSG D +FVVVDR SKM IP KT
Sbjct: 1239 SKSKNQGLYSALPIPSHPWVDISMDFVLGLPRSKSGRDSIFVVVDRFSKMAHFIPFHKTD 1298
Query: 3001 MGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDGQ 3180
LFF+ + + G+P +I SDRD++FLS+F +LW + +RL +TT HPQTDGQ
Sbjct: 1299 DAVQVADLFFREIVRLHGMPKTIFSDRDAKFLSYFWKTLWSKLGTRLMFSTTCHPQTDGQ 1358
Query: 3181 TEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPFD 3360
TEVVNRT+ +LR K+ + W+E LP++ FA+N ++HSS+ SPFE G+ P SP D
Sbjct: 1359 TEVVNRTLSALLRSLVKKNLRLWEECLPHVEFAYNHSLHSSTKFSPFEVVYGFNPLSPLD 1418
Query: 3361 LV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCN 3531
L+ S +S GK + + I ++H TV A ++ Y K +K
Sbjct: 1419 LLPLPLSERVSTDGKRKA---------DTIKKLHETVRANIEAKTEVYTRKANKKKKKVI 1469
Query: 3532 FGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINAE 3708
F GD GPF+IL +I +NA++LDL + S N
Sbjct: 1470 FEEGDLVWVHLRKERFPEERKSKLMPRVDGPFQILKKIHDNAYQLDLQGKYDISSSFNVS 1529
Query: 3709 YL 3714
L
Sbjct: 1530 DL 1531
Score = 286 bits (732), Expect(2) = 0.0
Identities = 139/273 (50%), Positives = 187/273 (68%), Gaps = 2/273 (0%)
Frame = +2
Query: 1133 DLKLKYKDPFSDVT--GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELL 1306
D+ + D F D GLPP R +EH+I +SLPN YRT E+ E++KQV +LL
Sbjct: 677 DILQDFSDVFPDENPKGLPPVRGIEHQIDFVPGASLPNRPAYRTNPVETKELQKQVGDLL 736
Query: 1307 ELGMIVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVR 1486
E G I S SP VLLVPKKDG WRMC+D RA+N IT+K R+P+PR+DDM+D+L
Sbjct: 737 EKGHIRESLSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSS 796
Query: 1487 VFTKLDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPF 1666
VF+K+D K YH +R++E D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN ++R F
Sbjct: 797 VFSKIDLKSGYHQIRMKEGDEWKTAFKTKLGLYEWLVMPFGLTNAPSTFMRLMNHILRSF 856
Query: 1667 IEYFAIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVG 1846
I +F +VY DDILIY + ++H +H + V VL + +L N++ C FG + +V+LGF+VG
Sbjct: 857 IGHFVVVYFDDILIYSKNLDDHKIHLKSVLDVLRKEKLFANLEKCSFGTDHVVFLGFVVG 916
Query: 1847 GGQRKIDPKKVEVITKWARPSTVTEIRSS*GLA 1945
++D +K++ I W P+TV E+RS GLA
Sbjct: 917 ADGLRVDEEKIKAIRDWPSPTTVGEVRSFHGLA 949
Score = 66.6 bits (161), Expect = 2e-07
Identities = 36/110 (32%), Positives = 60/110 (54%)
Frame = +2
Query: 572 RPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLKTNKHPKRCPLGWL 751
+ ++ + RE LF + + ++ID GS N+ S++LV+KLGL T + L WL
Sbjct: 468 KTNEKEQRENLFHSRCLISEKVCSLIIDGGSCTNVASDTLVRKLGLATRPLSRPFRLEWL 527
Query: 752 QKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWDRDA 901
+ G V +Q T + DEV C+V+P+D C ++ G P+ +D+ A
Sbjct: 528 NETGEQYVKEQVTIPLTIGRY-EDEVVCNVLPMDACHILLGRPWQFDKRA 576
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 398 bits (1023), Expect(2) = 0.0
Identities = 227/601 (37%), Positives = 333/601 (55%), Gaps = 3/601 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R F++ FSTIA LH LT F +AF LK K++ AP+L+LP
Sbjct: 873 RSFLGLAGFYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLP 932
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE+E DAS LGGVLLQ+GKPV Y SE S NY+ YDK+ ++L + ++ W+
Sbjct: 933 DFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQ 992
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ +F +I++KKG N + D LS
Sbjct: 993 HYLWPKEFVIHSDHESLKHIRSQAKLNR-RHAKWVEFIESFPYVIKHKKGKENVIVDALS 1051
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + ++YA N++ L +G +++
Sbjct: 1052 RRYAMLSQLDFKIFGLETIKEQYAHD---DDFKDVLLNCKEGRTWNKFVLTNGFVFRANK 1108
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP + L+EAH + GHFG+ KT L ++FW KM+ DV + V C +
Sbjct: 1109 LCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKA 1168
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1169 KSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS 1228
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
LFF+ + + G+P +I+SDRD++FLSHF +LW + ++L +TT HPQTDG
Sbjct: 1229 DDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDG 1288
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNRT+ MLR K+ K W+E LP++ FA+N + HS++ K PFE G LP +P
Sbjct: 1289 QTEVVNRTVSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPI 1348
Query: 3358 DLVFSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCNFG 3537
DL+ + + A+ E + ++H T + +++ KYK K F
Sbjct: 1349 DLLPLPTLERVNFD------AKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFE 1402
Query: 3538 VGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINAEYL 3714
GD GPF++L +I +NA++L+LP G+ N L
Sbjct: 1403 PGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDNAYKLELPADFGVSPTFNIADL 1462
Query: 3715 K 3717
K
Sbjct: 1463 K 1463
Score = 270 bits (691), Expect(2) = 0.0
Identities = 134/257 (52%), Positives = 178/257 (69%)
Frame = +2
Query: 1175 GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAV 1354
GLPP R +EH+I L +SLPN YRT EE+ EI++QVQELL+ G + S SP V
Sbjct: 623 GLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPV 682
Query: 1355 LLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRV 1534
LLVPKKDG WRMC+D RA+N ITI+ R+P+PR+DDM+D+L VF+K+D YH +R+
Sbjct: 683 LLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLCSGYHQIRM 742
Query: 1535 QEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYD 1714
+ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN+++R FI F +VY DDILIY
Sbjct: 743 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 802
Query: 1715 RTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITK 1894
R+ E+H H VF L + +L N++ C F + + +LG++V ++D KVE I
Sbjct: 803 RSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHS 862
Query: 1895 WARPSTVTEIRSS*GLA 1945
W P+T+T++RS GLA
Sbjct: 863 WPVPTTITQVRSFLGLA 879
>dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indica Group]
Length = 1587
Score = 395 bits (1016), Expect(2) = 0.0
Identities = 227/604 (37%), Positives = 331/604 (54%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + R+F++ FSTIA LH LT F +AF LK K++ AP+L+LP
Sbjct: 977 RSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLP 1036
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE+E DAS LGGVLLQ+GKPV Y SE S NY+ YDKE ++L + ++ W+
Sbjct: 1037 DFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQ 1096
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q K RH K + ++ +F +I++KKG N +AD LS
Sbjct: 1097 HYLWPKEFVIHSDHESLKHIRSQAK-HNRRHAKWVEFIESFPYVIKHKKGKENVIADALS 1155
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + ++YA N++ L +G +++
Sbjct: 1156 RRYAMLSQLDFKIFGLETIKEQYAHD---DDFKDVLLNCKEGRTWNKFVLTNGFVFRANK 1212
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP + L+EAH + GHFG+ K L + FW K + DV + V C +
Sbjct: 1213 LCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKA 1272
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVPS PWE ISMDF+ GLP+TK G D +FVVVDR SKM IPC K+
Sbjct: 1273 KSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS 1332
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
LFF+ + + G+P +I+SDRD++FLSHF +LW + ++L +TT HPQTDG
Sbjct: 1333 DDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDG 1392
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
QTEVVNRT+ MLR K+ K W+E LP++ FA+N + HS++ K PFE G LP +P
Sbjct: 1393 QTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPI 1452
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ K + E + ++H T + +++ KYK K
Sbjct: 1453 DLLPLPTSERVNFDAKYRA---------ELMLKLHETTKENIERMNIKYKLAGSKGKKHV 1503
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
F GD GPF++L +I +NA++L+LP G+ N
Sbjct: 1504 AFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNI 1563
Query: 3706 EYLK 3717
LK
Sbjct: 1564 ADLK 1567
Score = 272 bits (696), Expect(2) = 0.0
Identities = 134/257 (52%), Positives = 179/257 (69%)
Frame = +2
Query: 1175 GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAV 1354
GLPP R +EH+I L +SLPN YRT EE+ EI++QVQELL+ G + S SP V
Sbjct: 727 GLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPV 786
Query: 1355 LLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRV 1534
LLVPKKDG WRMC+D RA+N ITI+ R+P+PR+DDM+D+L VF+K+D + YH +R+
Sbjct: 787 LLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRM 846
Query: 1535 QEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYD 1714
+ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN+++R FI F +VY DDILIY
Sbjct: 847 KLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYS 906
Query: 1715 RTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITK 1894
R+ E+H H VF L + +L N++ C F + + +LG++V ++D KVE I
Sbjct: 907 RSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHS 966
Query: 1895 WARPSTVTEIRSS*GLA 1945
W P+T+T++RS GLA
Sbjct: 967 WPVPTTITQVRSFLGLA 983
Score = 70.5 bits (171), Expect = 1e-08
Identities = 39/117 (33%), Positives = 63/117 (53%)
Frame = +2
Query: 551 LMTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLKTNKHPK 730
+++ ER ++ L LF +K V+ID GS NL S +V+KL L T HP+
Sbjct: 474 VLSAQMERAEQNQLHT-LFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALSTQPHPQ 532
Query: 731 RCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWDRDA 901
+ WL G ++V++ FA+ S D + CDVVP+ C ++ G P+ +D+D+
Sbjct: 533 PYYIQWLNSSGKVKVTRLVRVHFAIG-SYHDSINCDVVPMQACSMLLGRPWQFDKDS 588
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 398 bits (1023), Expect(2) = 0.0
Identities = 229/604 (37%), Positives = 339/604 (56%), Gaps = 6/604 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ FLG + +F++ FSTIA L+ LT F + E+AF +LK K++ AP+L+LP
Sbjct: 928 RSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKHKLTHAPLLQLP 987
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ + TFE+E DAS LGGVLLQ+GK V Y SE S + NY+ YDKE Y+L + ++ W+
Sbjct: 988 DFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQ 1047
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ K V+H+DH+ L+++ +Q KL + RH K + ++ +F +I++KKG N +A+ LS
Sbjct: 1048 HYLWPKEFVIHSDHESLKHIRSQGKLNR-RHAKWVEFIESFPYVIKHKKGKENIIANALS 1106
Query: 2464 RPPVRALMVSMRIQPI--VPQEYAESYAXXXXXXXXXXXXXXXXXNEYELRDGLLYKGQL 2637
R + +I + + +YA N++ + DG +++
Sbjct: 1107 RRYTLLTQLDYKIFGLETIKDQYAHD---ADFNDVLLHCKDGRTWNKFVINDGFVFRANK 1163
Query: 2638 LCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCSTS 2817
LCIP RL L+EAH + GHFG KT L + FW +M+ DV + V C +
Sbjct: 1164 LCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKA 1223
Query: 2818 KPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCTKT 2997
K GLY+PLPVP+ PWE ISMDF+ GLP+TK G D +FVVVDR SKM+ IPC KT
Sbjct: 1224 KSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKT 1283
Query: 2998 VMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQTDG 3177
+ LFF+ + + G+P +I+SDRD++FLSHF +LW + ++L +TT HPQTDG
Sbjct: 1284 DDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDG 1343
Query: 3178 QTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPSPF 3357
Q EVVNRT+ MLR K+ K W+E LP++ FA N ++HS++ PF+ LP +P
Sbjct: 1344 QIEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPI 1403
Query: 3358 DLV---FSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPC 3528
DL+ S ++ K Q+A+ L ++H T + +++ +KYK DK
Sbjct: 1404 DLMPLPSSEKLNFDAK-----QRAELML----KLHETTKENIERMNAKYKFAGDKGRREL 1454
Query: 3529 NFGVGDXXXXXXXXXXXXXXXXXXXXXXY-GPFRILDQIGNNAFRLDLPPYLGMYSVINA 3705
NF GD GPF++L +I NA+++DLP G+ N
Sbjct: 1455 NFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNV 1514
Query: 3706 EYLK 3717
LK
Sbjct: 1515 ADLK 1518
Score = 268 bits (685), Expect(2) = 0.0
Identities = 133/269 (49%), Positives = 180/269 (66%), Gaps = 2/269 (0%)
Frame = +2
Query: 1145 KYKDPFSDVT--GLPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGM 1318
+Y D F GLPP R +EH+I L +SLPN YRT EE+ EI++QV ELL+ G
Sbjct: 666 EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 725
Query: 1319 IVPSASPYGSAVLLVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTK 1498
+ S SP V+LVPKKDG WRMC+D RA+N ITI+ R+P+PR+DDM+D+L VF+K
Sbjct: 726 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 785
Query: 1499 LDFKFRYHHMRVQEDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYF 1678
++ + YH + ++ D WKTAFKTK GL+EWLVMPFGL NA +TFM LMN+++RPFI F
Sbjct: 786 VELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKF 845
Query: 1679 AIVYLDDILIYDRTWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQR 1858
+VY DDILIY ++ EH H VF L + +L N++ C F + + +LG++V
Sbjct: 846 VVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGI 905
Query: 1859 KIDPKKVEVITKWARPSTVTEIRSS*GLA 1945
++D KVE I W P TV+++RS GLA
Sbjct: 906 EVDQAKVEAIQSWPTPKTVSQVRSFLGLA 934
Score = 75.9 bits (185), Expect = 3e-10
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Frame = +2
Query: 386 CTHCKQTGHVVDKC------WVKNPHLKPKGLQRKESRKAALVA-----QTPKGVHGLTE 532
C CK GHV C VKN + A L A + P+ G
Sbjct: 371 CHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAF 430
Query: 533 PNSKLSLMT----GAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQK 700
+ SL+ A+ ++ + R LF VK ++ID GS NL S+ +V+K
Sbjct: 431 ADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEK 490
Query: 701 LGLKTNKHPKRCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSP 880
L L T HP + WL G +V++ FA+ D V CDVVP+ C ++ G P
Sbjct: 491 LALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAIGNY-HDVVECDVVPMQACNILLGRP 549
Query: 881 YLWDRDANLQRREQKYT 931
+ +DRD+ R +Y+
Sbjct: 550 WQFDRDSMHHGRSNQYS 566
>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1452
Score = 384 bits (985), Expect(2) = e-180
Identities = 228/598 (38%), Positives = 328/598 (54%), Gaps = 5/598 (0%)
Frame = +1
Query: 1924 QEFLGACTYLRKFIRHFSTIAGQLHGLTGAKAKFE*QKTHEDAFQLLKRKISEAPVLELP 2103
+ F G ++ R+FIR+FS+I + K FE + + AF+ +K ++EAPVL LP
Sbjct: 772 RSFHGLASFYRRFIRNFSSIMSPITESL-KKDGFEWSHSAQKAFERVKALMTEAPVLALP 830
Query: 2104 NIHHTFEVETDASNYALGGVLLQDGKPVEYHSELFSSAMKNYAPYDKEFYSLYQCIKHWR 2283
+ F VE DAS +G VL QDG+P+E+ SE + + + Y+ YD EFY+L + I+HW+
Sbjct: 831 DFEKLFVVECDASYVGIGAVLSQDGRPIEFFSEKLTDSRRRYSTYDLEFYALVRAIRHWQ 890
Query: 2284 VYILGK*VVVHADHKPLEYLHAQTKLQQARHMK*MSYLMTFNILIRYKKGVTNKLADMLS 2463
Y+ + V++DH+ L YLH+Q KL +H K S+L FN ++YK G +N +AD LS
Sbjct: 891 HYLAYREFAVYSDHQALRYLHSQKKLSN-QHAKWSSFLNEFNFSLKYKSGQSNTVADALS 949
Query: 2464 RPPVRALMVS-MRIQPIVPQEYAESYAXXXXXXXXXXXXXXXXXNE---YELRDGLLYKG 2631
R R M+S M Q +E Y+ E Y L + L+KG
Sbjct: 950 R---RCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKG 1006
Query: 2632 QLLCIPEYGDRLQWLREAHTSQVAGHFGMNKTLLNL*RYVFWAKMQDDVAKLVRGYKLCS 2811
LCIPE R Q +RE H + + GHFG +KTL+ + +W KM+ DV +LV+ C
Sbjct: 1007 NQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLVMVADRYYWPKMRRDVERLVKRCPACL 1066
Query: 2812 TSKPSNMTRGLYLPLPVPSRPWESISMDFLGGLPKTKSGHDYLFVVVDRLSKMIALIPCT 2991
K S GLY+PLP P PW +SMDF+ GLPKT G D +FVVVDR SKM IPC
Sbjct: 1067 FGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTTKGFDSIFVVVDRFSKMAHFIPCF 1126
Query: 2992 KTVMGADAGKLFFKHVWKHFGLPTSILSDRDSRFLSHF*DSLWKMMDSRLKKNTTFHPQT 3171
+T +LFF+ + G+PTSI+SDR +F+ +F +LW+ + LK ++T HPQT
Sbjct: 1127 RTSDATHIAELFFREIVILHGIPTSIVSDRHVKFMGYFWRTLWRKFGTELKYSSTCHPQT 1186
Query: 3172 DGQTEVVNRTMVHMLRGYNSKHPKTWDESLPYL*FAFNIAVHSSSWKSPFETCNGYLPPS 3351
DGQTEVVNR++ +MLR +PKTWD +P FA+N +V+ S K+PFE G P
Sbjct: 1187 DGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQH 1246
Query: 3352 PFDLVFSSDISMGGKEGSE*QKAQKFLEKISQIHATVEAQLKKSQSKYKAKHDKHLVPCN 3531
DLV + EG + F ++I +IH V+A LK S ++Y ++H
Sbjct: 1247 VLDLVPLPQEARVSNEG------ELFADQIRKIHEEVKAALKASNAEYSFTANQHRRKQE 1300
Query: 3532 FGVGD-XXXXXXXXXXXXXXXXXXXXXXYGPFRILDQIGNNAFRLDLPPYLGMYSVIN 3702
F GD +GP ++L +I +NA+ ++LPP L + + N
Sbjct: 1301 FEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLKKISSNAYLIELPPELQINPIFN 1358
Score = 280 bits (716), Expect(2) = e-180
Identities = 132/256 (51%), Positives = 182/256 (71%)
Frame = +2
Query: 1178 LPPNRSVEHEIMLTGESSLPNVGLYRTTIEESNEIKKQVQELLELGMIVPSASPYGSAVL 1357
LPP RS++H I L ++LPN+ YR + E+++QV+EL E G++ S SP L
Sbjct: 523 LPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRAEVQRQVEELFEKGLVRESKSPCACPAL 582
Query: 1358 LVPKKDGGWRMCIDYRALNKITIKNRYPLPRIDDMMDQLEKVRVFTKLDFKFRYHHMRVQ 1537
L PKKDG WRMC+D RA+NKITIK R+P+PR+D+M+DQL RVF+K+D K YH +R++
Sbjct: 583 LAPKKDGSWRMCVDSRAINKITIKYRFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMR 642
Query: 1538 EDDTWKTAFKTKQGLFEWLVMPFGLCNASATFMCLMNDLIRPFIEYFAIVYLDDILIYDR 1717
+ D WKTAFKT GLFEWLVMPFGL NA +TFM +M ++++PF+ F +VY DDILIY
Sbjct: 643 DGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEVLKPFLNSFVVVYFDDILIYSH 702
Query: 1718 TWEEHLVHAEKVFKVLHEGQLKLNVKMCEFGKEELVYLGFIVGGGQRKIDPKKVEVITKW 1897
T E+HL H +V +VL + QL +N+K C F + E+V+LGFIV K DP+K+ I++W
Sbjct: 703 TKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKIRAISEW 762
Query: 1898 ARPSTVTEIRSS*GLA 1945
P+++ E+RS GLA
Sbjct: 763 PAPTSIKEVRSFHGLA 778
Score = 94.0 bits (232), Expect = 1e-15
Identities = 48/133 (36%), Positives = 74/133 (55%)
Frame = +2
Query: 551 LMTGAKERPSKDDLREQLFTVNMQVKTTLVDVVIDLGSQKNLLSNSLVQKLGLKTNKHPK 730
+MT ++D R +F + + + D+VID GS +N++S V KL L TNKHP
Sbjct: 308 IMTTTVNEEAEDWKRRSIFRTRVVCEGKVCDLVIDGGSMENIISKEAVNKLKLPTNKHPY 367
Query: 731 RCPLGWLQKEGGLQVSQQCTFKFALDES*IDEVTCDVVPLDVCQVVPGSPYLWDRDANLQ 910
+GWL+K + V+ QC KF + ++ DE CDVVP+DV ++ G P+L+D D +
Sbjct: 368 PYKIGWLKKGHEVPVTTQCLVKFTMGDNSDDEALCDVVPMDVGHILVGRPWLYDHDMVHK 427
Query: 911 RREQKYTLPKMEK 949
+ Y+ K K
Sbjct: 428 TKPNTYSFYKNNK 440