BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00062345
         (609 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009166683.1| RNA polymerase beta subunit (chloroplast) [T...    50   2e-06
ref|YP_009145253.1| DNA-directed RNA polymerase beta chain (plas...    49   4e-06
ref|YP_009163009.1| RNA polymerase beta subunit (chloroplast) [S...    50   5e-06
gb|AFU95592.1| RpoB, partial (chloroplast) [Euphorbia maculata]        50   5e-06

>ref|YP_009166683.1| RNA polymerase beta subunit (chloroplast) [Tanaecium tetragonolobum]
            gi|924443716|gb|ALB78251.1| RNA polymerase beta subunit
            (chloroplast) [Tanaecium tetragonolobum]
          Length = 1075

 Score = 50.1 bits (118), Expect(2) = 2e-06
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +1

Query: 463  N*EDAPKSFEVPV*ELRFLALEMNHILAPEKNFQLKRRK 579
            N EDAP+SF + V ELR LALE+NH L  EKNFQ+ R++
Sbjct: 1036 NLEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKE 1074



 Score = 28.5 bits (62), Expect(2) = 2e-06
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
 Frame = +3

Query: 348  EI*VWAPEG------LVLLSHFPTDATKAHKEVLGTITIEGTTV 461
            E+ VWA EG      L  +  + +D  +A +EVLGT+ I G T+
Sbjct: 991  EMEVWALEGFGVAHILQEILTYKSDHIRARQEVLGTMIIGGVTI 1034


>ref|YP_009145253.1| DNA-directed RNA polymerase beta chain (plastid) [Trillium decumbens]
            gi|828348670|gb|AKK32131.1| DNA-directed RNA polymerase
            beta chain (plastid) [Trillium decumbens]
          Length = 1070

 Score = 48.9 bits (115), Expect(2) = 4e-06
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +1

Query: 463  N*EDAPKSFEVPV*ELRFLALEMNHILAPEKNFQLKRRK 579
            N EDAP+SF + V ELR LALE+NH L  EKNF++ R++
Sbjct: 1031 NLEDAPESFRLLVRELRSLALELNHFLVSEKNFEINRKE 1069



 Score = 28.9 bits (63), Expect(2) = 4e-06
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +3

Query: 348  EI*VWAPEG------LVLLSHFPTDATKAHKEVLGTITIEGTTV*LRGCPK 482
            E+ VWA EG      L  +  + +D  +A +EVLG + +EGT   L   P+
Sbjct: 987  EMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGAMIMEGTVPNLEDAPE 1037


>ref|YP_009163009.1| RNA polymerase beta subunit (chloroplast) [Sinopodophyllum hexandrum]
            gi|909719776|gb|AKT94044.1| RNA polymerase beta subunit
            (chloroplast) [Sinopodophyllum hexandrum]
          Length = 1070

 Score = 50.1 bits (118), Expect(2) = 5e-06
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +1

Query: 463  N*EDAPKSFEVPV*ELRFLALEMNHILAPEKNFQLKRRK 579
            N EDAP+SF + V ELR LALE+NH L  EKNFQ+ R++
Sbjct: 1031 NPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKE 1069



 Score = 27.3 bits (59), Expect(2) = 5e-06
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
 Frame = +3

Query: 348  EI*VWAPEG------LVLLSHFPTDATKAHKEVLGTITIEGT 455
            E+ VWA EG      L  +  + +D  +A +EVLGT+ I GT
Sbjct: 987  EMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTMIIGGT 1028


>gb|AFU95592.1| RpoB, partial (chloroplast) [Euphorbia maculata]
          Length = 807

 Score = 50.1 bits (118), Expect(2) = 5e-06
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +1

Query: 469 EDAPKSFEVPV*ELRFLALEMNHILAPEKNFQLKRRK 579
           EDAP+SF + V ELR LALE+NH+L  EKNFQ+ R++
Sbjct: 770 EDAPESFRLLVRELRSLALELNHLLVSEKNFQINRKE 806



 Score = 27.3 bits (59), Expect(2) = 5e-06
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
 Frame = +3

Query: 348 EI*VWAPEGLVLLSH-------FPTDATKAHKEVLGTITIEGT 455
           E+ VWA EG  + SH       + +D  +A +EVLGT+ I GT
Sbjct: 724 EMEVWALEGFGV-SHILQEMLTYKSDHIRARQEVLGTMIIGGT 765