BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00056100
         (1079 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS79698.1| RNA polymerase III large subunit, partial [Psilot...    87   3e-55
gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale]   195   6e-47
gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta]      143   2e-43
ref|XP_010666568.1| PREDICTED: DNA-directed RNA polymerase III s...   122   2e-42
gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata]      140   3e-41
gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba]       137   7e-40
gb|AAS79690.1| RNA polymerase III large subunit [Ephedra viridis]     132   2e-38
gb|AAS79689.1| RNA polymerase III large subunit [Welwitschia mir...   130   2e-38
gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra]         133   3e-38
gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parvif...   130   2e-37
gb|AAS79693.1| RNA polymerase III large subunit [Podocarpus macr...   124   2e-36
ref|XP_010692683.1| PREDICTED: DNA-directed RNA polymerase III s...   113   5e-35
ref|XP_010535561.1| PREDICTED: DNA-directed RNA polymerase III s...   115   5e-34
ref|XP_010092991.1| DNA-directed RNA polymerase III subunit RPC1...   137   1e-33
ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III s...   139   3e-33
ref|XP_006828249.1| PREDICTED: DNA-directed RNA polymerase III s...   132   2e-32
ref|XP_011627269.1| PREDICTED: DNA-directed RNA polymerase III s...   132   2e-32
gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tu...   132   2e-31
ref|XP_009402242.1| PREDICTED: DNA-directed RNA polymerase III s...   134   1e-30
ref|XP_009126624.1| PREDICTED: DNA-directed RNA polymerase III s...   102   2e-29

>gb|AAS79698.1| RNA polymerase III large subunit, partial [Psilotum nudum]
          Length = 549

 Score = 86.7 bits (213), Expect(5) = 3e-55
 Identities = 44/80 (55%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
 Frame = +3

Query: 780  GVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRP-----SLSPKEIKKLTDARL* 944
            G++Q LYGDDG DP  MEGKDG+PL+ +RL LK KAI P     +L P E  +  + RL 
Sbjct: 390  GIVQLLYGDDGRDPINMEGKDGTPLNLERLMLKTKAICPAFGASALPPLEYLEKVEGRLG 449

Query: 945  AHDMTPEGDCSETFKISLLD 1004
             HDMTPEG CS  FK SL +
Sbjct: 450  MHDMTPEGGCSMAFKQSLAE 469



 Score = 80.5 bits (197), Expect(5) = 3e-55
 Identities = 38/53 (71%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
 Frame = +3

Query: 414 CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDRIFP 569
           CL+ LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG+ A + F DR  P
Sbjct: 261 CLEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGHRAPNGFIDRSLP 313



 Score = 67.4 bits (163), Expect(5) = 3e-55
 Identities = 33/47 (70%), Positives = 36/47 (76%)
 Frame = +2

Query: 560 NLPHFPRNSTPPDDKGFVENSFCTGLIATELFFHTIMAGREGLVDTA 700
           +LPHFPR+   P  KGFV NSF +GL ATE FFHT M GREGLVDTA
Sbjct: 311 SLPHFPRHDKSPQAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTA 356



 Score = 37.0 bits (84), Expect(5) = 3e-55
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +1

Query: 700 GYMSRRLIKALEDLSSQYDNTVCKAS 777
           GYMSRRL+K+LEDL + YD TV   S
Sbjct: 363 GYMSRRLMKSLEDLYTHYDGTVRNGS 388



 Score = 35.0 bits (79), Expect(5) = 3e-55
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 316 SAQTLESELTYLLNGFREKTGKVCM 390
           SAQTLESE+T  LN  RE  GKVC+
Sbjct: 238 SAQTLESEITGELNKIREVAGKVCL 262


>gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale]
          Length = 554

 Score =  195 bits (495), Expect = 6e-47
 Identities = 121/261 (46%), Positives = 152/261 (58%), Gaps = 28/261 (10%)
 Frame = +3

Query: 381  GLYGNRRIKQK--CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRF 551
            G+  N R K    C++ LHWRN+PLI+SQCGS+GSP NI+Q+IACVGQQSVGG  A + F
Sbjct: 245  GIQNNIREKAATVCMENLHWRNSPLIMSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGF 304

Query: 552  TDR---------IFPTSLGTQPHLMIKDLSRTHS-----------APA*LPLSCSFILLW 671
             DR         + P + G   +     L+ T                 +  + +  +  
Sbjct: 305  IDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSR 364

Query: 672  QDVKVLWILRLHVS*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSP 851
            + +K L  L +H   T +S                 GV+QFLYGDDGMDPS+MEGKDG+P
Sbjct: 365  RLIKALEDLSIHYDSTVRSASG--------------GVVQFLYGDDGMDPSRMEGKDGTP 410

Query: 852  LDFDRLYLKAKAIRP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAF 1016
            L+ DRLY+K KA  P     SLSP EI KL  ARL  HDMTPEG CS+ FK SLLD+E F
Sbjct: 411  LNLDRLYMKVKATCPARGHSSLSPAEILKLVVARLSKHDMTPEGGCSDAFKKSLLDEEGF 470

Query: 1017 KEGKQGGFLYKCITSLTNTRK 1079
             + K+GGFL KCITSL NTR+
Sbjct: 471  MQNKEGGFLGKCITSLKNTRR 491



 Score = 61.6 bits (148), Expect = 1e-06
 Identities = 58/179 (32%), Positives = 79/179 (44%), Gaps = 51/179 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVP---------ERRVC-- 153
           +PVE WTGKQLF+VLI P AQ+RV VNLT+ EKSY + +    P            +C  
Sbjct: 81  KPVELWTGKQLFNVLIRPHAQMRVFVNLTVFEKSYIKGRETLCPNDGFVYFRNSELICGQ 140

Query: 154 -----------------LYSE**TYLWASW---*SYFSARWIGAMGS*LVL---KTNK*C 264
                            L  +   +  AS     +  SARWIG  G  + +   +  K  
Sbjct: 141 LGKATLGNGNKDGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNQGFSIGISDVQPGKSL 200

Query: 265 TSSEIQKWDT-----------YSSTKL------*SAQTLESELTYLLNGFREKTGKVCM 390
           +  + +K D            Y + KL       +AQTLE+E+T + N  REK   VCM
Sbjct: 201 SDKKQKKIDKGKEKCDKLIEHYKTGKLELQPGCDAAQTLEAEITGIQNNIREKAATVCM 259


>gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta]
          Length = 548

 Score =  143 bits (360), Expect(2) = 2e-43
 Identities = 95/221 (42%), Positives = 114/221 (51%), Gaps = 26/221 (11%)
 Frame = +3

Query: 414 CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY------------------- 533
           CLK LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG                    
Sbjct: 260 CLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 319

Query: 534 -PASSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHV 710
            PA+  F    F T L            R       +  + +  +  + +K L  L  H 
Sbjct: 320 TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 379

Query: 711 S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
             T ++                 G++Q LYGDDGMDP  MEGKDG+PL+ DRL +K KAI
Sbjct: 380 DGTVRNASG--------------GIVQLLYGDDGMDPVNMEGKDGTPLNLDRLLMKTKAI 425

Query: 891 RP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISL 998
            P     SLSP EI K  + RL  HDMTPEG CS  FK SL
Sbjct: 426 CPANGVISLSPAEISKRVEERLSKHDMTPEGGCSAAFKNSL 466



 Score = 62.0 bits (149), Expect(2) = 2e-43
 Identities = 57/179 (31%), Positives = 75/179 (41%), Gaps = 51/179 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERR------------- 147
           +P+E WTGKQLFSVL+ P A +RV VNL LAEK+Y + +    P                
Sbjct: 83  KPIELWTGKQLFSVLVRPNANVRVFVNLMLAEKNYSKSRETMCPNDGFVYFRNSELISGQ 142

Query: 148 ---------------VCLYSE**TYLWASW*SYF---SARWIGAMGS*LVLKTNK*CTSS 273
                            L  +  T+  AS  +     SARWIG  G  + +   +  T  
Sbjct: 143 IGKATLGNGNKDGLFTVLLRDYNTHAAASSMNRLAKLSARWIGNHGFSIGIDDVQPGTRL 202

Query: 274 EIQKW--------------DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
             QK               D Y+  KL       +AQTLE+E+T  LN  RE  G VC+
Sbjct: 203 SAQKEERIKEGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIREIAGSVCL 261


>ref|XP_010666568.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Beta
            vulgaris subsp. vulgaris] gi|870842632|gb|KMS96001.1|
            hypothetical protein BVRB_002940 [Beta vulgaris subsp.
            vulgaris]
          Length = 1352

 Score =  122 bits (306), Expect(3) = 2e-42
 Identities = 114/348 (32%), Positives = 162/348 (46%), Gaps = 49/348 (14%)
 Frame = +3

Query: 180  VGKLVKLL*CSLDW--SHGFLIGIENK*MMHFFRNTKM-----GHL*FNQVVICSNFGI* 338
            + +L KL   S  W  +HGF IGI++     F    K      G+   + ++   N G  
Sbjct: 670  MNRLAKL---SARWIGNHGFSIGIDDVQPGKFLNEQKQFNISAGYKVCDGLIQSYNEG-- 724

Query: 339  ANLS-------SEWL*RENWKGLYGNRRIKQK-CLK-LHWRNNPLIISQCGSRGSPDNIS 491
             NL+       ++ L  E  K L   R I  K C+K LHWRN+PLI+SQCGS+GSP NIS
Sbjct: 725  -NLTLMPGCDAAQTLEAEITKNLNEIREIAGKICMKELHWRNSPLIMSQCGSKGSPINIS 783

Query: 492  QIIACVGQQSVGGY--------------------PASSRFTDRIFPTSLGTQPHLMIKDL 611
            Q++ACVGQQ+VGG                     PA+  F    F T L           
Sbjct: 784  QMVACVGQQAVGGRRAPDGFIERSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMG 843

Query: 612  SRTHSAPA*LPLSCSFILLWQDVKVLWILRLHVS*TDQSLGRXXXXXXXXXXXX*CGVIQ 791
             R       +  + +  +  + +K L  L ++   T ++                  +IQ
Sbjct: 844  GREGLVDTAVKTADTGYMSRRLMKCLEDLAVYYDMTVRNSNGT--------------IIQ 889

Query: 792  FLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRPS-----LSPKEIKKLTDARL*AHDM 956
            F YGDDGMDP++MEG++G PLDF+RL  K +A  P+     LSP EI +  + RL  +D+
Sbjct: 890  FFYGDDGMDPAQMEGQEGFPLDFERLRFKVEATCPAGRNMKLSPDEISETINRRLSDYDV 949

Query: 957  TPEGDCSETFKISLLD--DEA------FKEGKQGGFLYKCITSLTNTR 1076
            +  G CS+ FK  + D  D+         E +   FL  CIT L + R
Sbjct: 950  STGGGCSDAFKKKMFDFFDKLAGRKCYVSEQQLQVFLDACITRLRSKR 997



 Score = 50.4 bits (119), Expect(3) = 2e-42
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSY 111
           +P+E WTGKQLF+VL+ P AQ++V VNL + EK Y
Sbjct: 572 KPIELWTGKQLFNVLLRPNAQLKVFVNLMVREKIY 606



 Score = 49.3 bits (116), Expect(3) = 2e-42
 Identities = 20/28 (71%), Positives = 26/28 (92%)
 Frame = +2

Query: 122 KETLCPNEGFVYIQNSELICGQVGKATL 205
           +ET+CPN+GFVY +NSEL+ GQ+GKATL
Sbjct: 618 EETMCPNDGFVYFRNSELMSGQLGKATL 645


>gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata]
          Length = 548

 Score =  140 bits (353), Expect(2) = 3e-41
 Identities = 99/247 (40%), Positives = 122/247 (49%), Gaps = 26/247 (10%)
 Frame = +3

Query: 414  CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY------------------- 533
            CLK LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG                    
Sbjct: 260  CLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 319

Query: 534  -PASSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHV 710
             PA+  F    F T L            R       +  + +  +  + +K L  L  H 
Sbjct: 320  TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 379

Query: 711  S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
              T ++                 G++Q LYGDD MDP  MEGK+G+PL+ DR+ +KAKA 
Sbjct: 380  DGTVRNASG--------------GIVQLLYGDDAMDPVNMEGKNGTPLNLDRILMKAKAT 425

Query: 891  RP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCI 1055
             P     SLSP EI K  + RL  HDMTPEG CS  FK SL             FL K I
Sbjct: 426  CPANGAFSLSPSEISKRVEDRLSKHDMTPEGGCSAAFKNSLAQ-----------FLEKQI 474

Query: 1056 TSLTNTR 1076
            + + NTR
Sbjct: 475  SLIQNTR 481



 Score = 57.4 bits (137), Expect(2) = 3e-41
 Identities = 55/179 (30%), Positives = 73/179 (40%), Gaps = 51/179 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERR------------- 147
           +P+E WTGKQLFSVL+ P A +RV VNL L EK+Y +      P                
Sbjct: 83  KPMELWTGKQLFSVLVRPNANVRVFVNLMLTEKNYSKSGETMCPNDGFVYFRNSELISGQ 142

Query: 148 ---------------VCLYSE**TYLWASW*SYF---SARWIGAMGS*LVLKTNK*CTSS 273
                            L  +  T+  AS  +     SARWIG  G  + +   +  T  
Sbjct: 143 IGKATLGNGNKDGLFTVLLRDYNTHAAASSMNRLAKLSARWIGNHGFSIGIDDVQPGTRL 202

Query: 274 EIQKW--------------DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
             +K               D Y+  KL       +AQTLE+E+T  LN  RE  G VC+
Sbjct: 203 SAKKEERIKEGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIREVAGSVCL 261


>gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba]
          Length = 548

 Score =  137 bits (346), Expect(2) = 7e-40
 Identities = 92/221 (41%), Positives = 112/221 (50%), Gaps = 26/221 (11%)
 Frame = +3

Query: 414 CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY------------------- 533
           CLK LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG                    
Sbjct: 260 CLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 319

Query: 534 -PASSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHV 710
            PA+  F    F T L            R       +  + +  +  + +K L  L  H 
Sbjct: 320 TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 379

Query: 711 S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
             T ++                 G++Q LYGDDGMDP  MEGKDG PL+ DRL +K KA 
Sbjct: 380 DSTVRNASG--------------GIVQLLYGDDGMDPVNMEGKDGPPLNLDRLLMKTKAT 425

Query: 891 RP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISL 998
            P     +LSP EI +  + RL  HDMTPEG CS  FK SL
Sbjct: 426 CPANGSVALSPSEIIRKVEERLLKHDMTPEGGCSAAFKSSL 466



 Score = 55.5 bits (132), Expect(2) = 7e-40
 Identities = 55/180 (30%), Positives = 75/180 (41%), Gaps = 52/180 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERRVCLY--------- 159
           +P+E WTGKQLFSVL+ P A +RV VNL L EK+Y +      P    C+Y         
Sbjct: 83  KPMELWTGKQLFSVLVRPNANMRVFVNLILTEKNYSKSGETMRPNDG-CVYFRNSELISR 141

Query: 160 --------------------SE**TYLWASW*SYF---SARWIGAMGS*LVLKTNK*CTS 270
                                +  T+  AS  +     SARWIG  G  + +   +  + 
Sbjct: 142 QIGKATLRNGNKDGLFTVLLRDYNTHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGSR 201

Query: 271 SEIQKW--------------DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
              +K               D Y+  KL       +AQTLE+E+T  LN  RE  G VC+
Sbjct: 202 LSAKKEQRIREGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIREVAGSVCL 261


>gb|AAS79690.1| RNA polymerase III large subunit [Ephedra viridis]
          Length = 548

 Score =  132 bits (333), Expect(2) = 2e-38
 Identities = 96/247 (38%), Positives = 123/247 (49%), Gaps = 26/247 (10%)
 Frame = +3

Query: 414  CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDRIF-------- 566
            CL+ LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG  A + F DR          
Sbjct: 260  CLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 319

Query: 567  -PTSLGTQPHLMIKDLSRT----HSAPA*LPLSCSFILLWQD-------VKVLWILRLHV 710
             P + G   +     L+ T    H+      L  + +   +        +K L  L  H 
Sbjct: 320  KPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 379

Query: 711  S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
              T +S                  ++QFLYGDD MDP  MEGKDG PL+ DRL +K KA 
Sbjct: 380  DGTVRSANS--------------AIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLIKTKAT 425

Query: 891  -----RPSLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCI 1055
                  P+LS  E+ K  D RL  +DM PE  CS  F+ SL +           FL K I
Sbjct: 426  CPANGSPALSVSELSKRVDERLSKYDMQPEAGCSAAFRNSLFN-----------FLEKYI 474

Query: 1056 TSLTNTR 1076
            +++  TR
Sbjct: 475  SNVKKTR 481



 Score = 55.8 bits (133), Expect(2) = 2e-38
 Identities = 55/180 (30%), Positives = 76/180 (42%), Gaps = 52/180 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERRVCLY--------- 159
           +P+E W GKQLFSVL+ P A++RV VN  + EK+Y +      P    C+Y         
Sbjct: 83  KPIELWIGKQLFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPSDG-CVYFRNSELISG 141

Query: 160 ------------SE**TYLWASW*SY-----------FSARWIG-----------AMGS* 237
                       S   + L   + +Y            SARWIG             G+ 
Sbjct: 142 QLGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGAR 201

Query: 238 LVLKTNK*CTS--SEIQKW-DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
           L  K  +  T   ++  K  D Y+  KL       +AQTLE+E+T  LN  RE  G VC+
Sbjct: 202 LTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCL 261


>gb|AAS79689.1| RNA polymerase III large subunit [Welwitschia mirabilis]
          Length = 548

 Score =  130 bits (327), Expect(2) = 2e-38
 Identities = 92/222 (41%), Positives = 114/222 (51%), Gaps = 26/222 (11%)
 Frame = +3

Query: 414  CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDRIF-------- 566
            CLK LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG  A + F DR          
Sbjct: 260  CLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 319

Query: 567  -PTSLGTQPHLMIKDLSRT----HSAPA*LPLSCSFILLWQD-------VKVLWILRLHV 710
             P + G   +     L+ T    H+      L  + +   +        +K L  L  H 
Sbjct: 320  PPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSAHY 379

Query: 711  S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
              T +S                  ++QF+YGDDGMDP  MEGKDG+PL+ DRL +K KAI
Sbjct: 380  DGTVRSANS--------------AIVQFVYGDDGMDPVHMEGKDGAPLNLDRLLMKTKAI 425

Query: 891  RP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLL 1001
             P     +L   EI +    RL   DM PE  CS  FK SLL
Sbjct: 426  CPANGYDALPCSEISRKVHERLSQPDMQPEAGCSAAFKNSLL 467



 Score = 58.2 bits (139), Expect(2) = 2e-38
 Identities = 55/180 (30%), Positives = 75/180 (41%), Gaps = 52/180 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERRVCLY--------- 159
           +P+E WTGKQLFSVL+ P A++RV VNL + EK+Y +      P    C+Y         
Sbjct: 83  KPIELWTGKQLFSVLVRPNAKMRVFVNLMVMEKNYSKSGETMCPNDG-CVYFRNSELISG 141

Query: 160 ------------SE**TYLWASW*SY-----------FSARWIGAMGS*LVLKTNK*CTS 270
                       +   T L   + +Y            SARWIG  G  + +   +    
Sbjct: 142 QLGKATLGNGNKNGLFTVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGAR 201

Query: 271 SEIQKW--------------DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
              QK               D Y+  KL       +AQTLE+E+T  LN  RE  G VC+
Sbjct: 202 LSSQKEERIKEGYSKCGMHIDLYNKGKLSLQPGCNAAQTLEAEITGELNKIREIAGSVCL 261


>gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra]
          Length = 548

 Score =  133 bits (334), Expect(2) = 3e-38
 Identities = 96/247 (38%), Positives = 126/247 (51%), Gaps = 26/247 (10%)
 Frame = +3

Query: 414  CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDR---------I 563
            CL+ LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG  A + F DR         +
Sbjct: 260  CLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDM 319

Query: 564  FPTSLGTQPHLMIKDLSRT----HSAPA*LPLSCSFILLWQD-------VKVLWILRLHV 710
             P + G   +     L+ T    H+      L  + +   +        +K L  L  H 
Sbjct: 320  TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 379

Query: 711  S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
              T ++                 G++Q LYGDDGMDP+ MEG DG+PL+ DRL +K KA 
Sbjct: 380  DGTVRNASG--------------GIVQLLYGDDGMDPAHMEGNDGAPLNMDRLLMKTKAT 425

Query: 891  RP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCI 1055
             P     +LS  EI +  + RL  HDM  EG CS  F  SL +           F  KCI
Sbjct: 426  CPRKGSCALSLVEISRKVEDRLLMHDMQLEGGCSAAFSRSLSE-----------FFGKCI 474

Query: 1056 TSLTNTR 1076
            +S+ +TR
Sbjct: 475  SSIRHTR 481



 Score = 54.7 bits (130), Expect(2) = 3e-38
 Identities = 58/179 (32%), Positives = 75/179 (41%), Gaps = 51/179 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSY-KQVQRNFVPERRVC---------- 153
           +PVE WTGKQLFSVL+ P A +RV VNL + EK+Y K  +     +  VC          
Sbjct: 83  KPVELWTGKQLFSVLVRPNANMRVFVNLIVMEKNYSKSGETMCRNDGCVCFRNSELISGQ 142

Query: 154 -----------------LYSE**TYLWASW*SYF---SARWIGAMGS*LVLKTNK*CTSS 273
                            L  +  T+  AS  +     SARWIG  G  + +   +     
Sbjct: 143 IGKATLGNGNKNGLFTVLLRDYNTHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 202

Query: 274 EIQKW--------------DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
             QK               D Y+  KL       SAQTLE+E+T  LN  RE  G VC+
Sbjct: 203 TAQKEERIREGYNKCDMHIDLYNKGKLTLQPGCNSAQTLEAEITGELNKIREIAGSVCL 261


>gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parviflorum]
          Length = 546

 Score =  130 bits (326), Expect(2) = 2e-37
 Identities = 93/247 (37%), Positives = 120/247 (48%), Gaps = 26/247 (10%)
 Frame = +3

Query: 414  CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY------------------- 533
            CL+ LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG                    
Sbjct: 258  CLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 317

Query: 534  -PASSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHV 710
             PA+  F    F T L            R       +  + +  +  + +K L  L  H 
Sbjct: 318  TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 377

Query: 711  S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
              T ++                 G++Q LYGDDGMDP+ MEG DG+PL+ DRL +K KA 
Sbjct: 378  DGTVRNASG--------------GIVQLLYGDDGMDPAHMEGNDGAPLNMDRLLMKTKAT 423

Query: 891  RP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCI 1055
             P     +LS  EI +  + RL  HDM  EG CS  F  SL +           F  KCI
Sbjct: 424  CPRKGSCALSLVEISRKVEDRLLMHDMQLEGGCSAAFSRSLSE-----------FFGKCI 472

Query: 1056 TSLTNTR 1076
            +S+ +TR
Sbjct: 473  SSIRHTR 479



 Score = 54.7 bits (130), Expect(2) = 2e-37
 Identities = 58/179 (32%), Positives = 75/179 (41%), Gaps = 51/179 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSY-KQVQRNFVPERRVC---------- 153
           +PVE WTGKQLFSVL+ P A +RV VNL + EK+Y K  +     +  VC          
Sbjct: 81  KPVELWTGKQLFSVLVRPNANMRVFVNLIVMEKNYSKSGETMCRNDGCVCFRNSELISGQ 140

Query: 154 -----------------LYSE**TYLWASW*SYF---SARWIGAMGS*LVLKTNK*CTSS 273
                            L  +  T+  AS  +     SARWIG  G  + +   +     
Sbjct: 141 IGKATLGNGNKNGLFTVLLRDYNTHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARL 200

Query: 274 EIQKW--------------DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
             QK               D Y+  KL       SAQTLE+E+T  LN  RE  G VC+
Sbjct: 201 TAQKEERIREGYNKCDMHIDLYNKGKLTLQPGCNSAQTLEAEITGELNKIREIAGSVCL 259


>gb|AAS79693.1| RNA polymerase III large subunit [Podocarpus macrophyllus]
          Length = 546

 Score =  124 bits (312), Expect(2) = 2e-36
 Identities = 95/247 (38%), Positives = 119/247 (48%), Gaps = 26/247 (10%)
 Frame = +3

Query: 414  CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY------------------- 533
            CL+ LHWRN+PLI+S CGS+GSP NISQ+IACVGQQSVGG                    
Sbjct: 260  CLRELHWRNSPLIMSLCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 319

Query: 534  -PASSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHV 710
             PA+  F    F T L            R       +  + +  +  + +K L  L  H 
Sbjct: 320  TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSSHY 379

Query: 711  S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
              T ++                 GV+QFLYGDDGMDP  MEGKDG+PL+ DRL +K KAI
Sbjct: 380  DGTVRNASG--------------GVVQFLYGDDGMDPVNMEGKDGAPLNLDRLLMKTKAI 425

Query: 891  RP-----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCI 1055
             P     +LS  EI K  + RL   DM  EG  S  FK SLL+           +  KC+
Sbjct: 426  CPANGSRALSVDEILKKVEERLAMPDMQTEG--SYKFKSSLLE-----------YFEKCV 472

Query: 1056 TSLTNTR 1076
             S+  TR
Sbjct: 473  CSIRKTR 479



 Score = 56.6 bits (135), Expect(2) = 2e-36
 Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 52/180 (28%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERRVCLY--------- 159
           +P+E WTGKQLFSVL+ P  ++RV VNL + EK+Y +      P    C+Y         
Sbjct: 83  KPIELWTGKQLFSVLVRPNTKMRVFVNLIVMEKNYSKCGETMCPNDG-CVYFRNSELISG 141

Query: 160 ------------SE**TYLWASW*SY-----------FSARWIGAMGS*LVLKTNK*CTS 270
                       +   + L   + S+            SARWIG  G  + +   +  T 
Sbjct: 142 QVGKATLGNGNKNGLFSILLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGTR 201

Query: 271 SEIQKW--------------DTYSSTKL*------SAQTLESELTYLLNGFREKTGKVCM 390
              +K               D Y+  KL       +AQTLESE+T  LN  RE  G +C+
Sbjct: 202 LSAKKEEQIREGYSKCDMHIDLYNKGKLTLQPGCNAAQTLESEITGELNKIREVAGSICL 261


>ref|XP_010692683.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Beta
            vulgaris subsp. vulgaris] gi|870847213|gb|KMS99616.1|
            hypothetical protein BVRB_1g021870 [Beta vulgaris subsp.
            vulgaris]
          Length = 1344

 Score =  113 bits (282), Expect(3) = 5e-35
 Identities = 82/226 (36%), Positives = 113/226 (50%), Gaps = 31/226 (13%)
 Frame = +3

Query: 420  KLHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDRIF---------PT 572
            +LHWRN+PL++SQCGS+GSP NISQ++ACVGQQ+VGG  A   F +R           PT
Sbjct: 754  QLHWRNSPLVMSQCGSKGSPINISQMVACVGQQAVGGCRAPDGFINRSLPHFPINSKTPT 813

Query: 573  SLGTQPHLMIKDLSRTH-----------------SAPA*LPLSCSFILLWQDVKVLWILR 701
            + G   +     L+ T                     A   +S   I   +D+ V + + 
Sbjct: 814  AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAATGYMSRRLIKCLEDLSVQYDMT 873

Query: 702  LHVS*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKA 881
            +       S G              C +IQFLYGDD MDP++MEG  G PLDF+RL+LK 
Sbjct: 874  VR-----NSSG--------------C-IIQFLYGDDAMDPTQMEGAKGFPLDFERLHLKV 913

Query: 882  KAIRPS-----LSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLD 1004
            +A  P+     LSP EI +  ++RL   ++T      E FK  LL+
Sbjct: 914  EATCPAGRTEKLSPSEISEFINSRLSKDEVTSCNFGYEAFKKKLLE 959



 Score = 52.8 bits (125), Expect(3) = 5e-35
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = +2

Query: 92  LSRKNLTSRCKETLCPNEGFVYIQNSELICGQVGKATL 205
           L  + L  R +ET+CPN+GFVYI+NSELI GQ+GKATL
Sbjct: 603 LENRKLACR-EETMCPNDGFVYIRNSELISGQLGKATL 639



 Score = 31.6 bits (70), Expect(3) = 5e-35
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 20/83 (24%)
 Frame = +1

Query: 202 FSARWIGAMGS*LVL---KTNK*CTSSEIQKW-----------DTYSSTKL*------SA 321
           FSARWIG  G  + +   +  K  +  + +K             +Y+  KL       ++
Sbjct: 670 FSARWIGNHGFSIGIDDVQPGKLLSEQKTEKILIGYKECDTLIQSYNEGKLTLRSGCDAS 729

Query: 322 QTLESELTYLLNGFREKTGKVCM 390
           +TLE+E+T  LN  RE+ G+VCM
Sbjct: 730 KTLEAEITTNLNRIREEAGEVCM 752


>ref|XP_010535561.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Tarenaya
            hassleriana]
          Length = 1376

 Score =  115 bits (289), Expect(2) = 5e-34
 Identities = 79/218 (36%), Positives = 112/218 (51%), Gaps = 26/218 (11%)
 Frame = +3

Query: 423  LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDRIF---------PTS 575
            LHWRN+PLI+SQCGS+GSP NISQ++ACVGQQ+V G+ A + F DR           P +
Sbjct: 772  LHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPNGFIDRSLPHFPRMSKTPAA 831

Query: 576  LGTQPHLMIKDLSRTHS-----------APA*LPLSCSFILLWQDVKVLWILRLHVS*TD 722
             G   +     LS T                 +  + +  +  + +K L  L +H   T 
Sbjct: 832  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTV 891

Query: 723  QSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRPS- 899
            ++                  ++QF YGDDGMDP++MEGK+G+PL+FDRL+LK +A  P  
Sbjct: 892  RNANGC--------------ILQFTYGDDGMDPARMEGKNGAPLNFDRLFLKVQATCPPS 937

Query: 900  -----LSPKEIKKLTDARL*AHDMTPEGDCSETFKISL 998
                 LS +E+ +  +  L  HD    G C+E F  SL
Sbjct: 938  PHHNYLSSQEVSQRFEEELTRHD--TGGVCTEAFVKSL 973



 Score = 57.8 bits (138), Expect(2) = 5e-34
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 62/190 (32%)
 Frame = +1

Query: 7    QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERRVC----------- 153
            +P+E WTGKQ+F VL+ P A +RV V LTL EKS+K   +  + E  +C           
Sbjct: 588  KPIELWTGKQIFGVLLRPNASVRVYVTLTLKEKSFK---KGKLDEETMCPNDGWVYFRNS 644

Query: 154  -------------------LYSE**TYLWASW*SY-----------FSARWIGAMG---- 231
                               LYS     L   + S+            SARWIG  G    
Sbjct: 645  ELISGQLGKATLGNGNKDGLYS----VLLRDYNSHAAATCMNRLAKLSARWIGNHGFSIG 700

Query: 232  --------------S*LVLKTNK*CTSSEIQKWD---TYSSTKL*SAQTLESELTYLLNG 360
                          S  +++  + C ++ IQK+D         L +A++LE+++T +LN 
Sbjct: 701  IDDVQPGKELNKKKSKTIMEGYEECDAT-IQKFDEGKLQLKAGLDAAKSLEADITEILNR 759

Query: 361  FREKTGKVCM 390
             RE TGK CM
Sbjct: 760  IREVTGKHCM 769


>ref|XP_010092991.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
            gi|587863463|gb|EXB53229.1| DNA-directed RNA polymerase
            III subunit RPC1 [Morus notabilis]
          Length = 1179

 Score =  137 bits (344), Expect(3) = 1e-33
 Identities = 90/221 (40%), Positives = 121/221 (54%), Gaps = 26/221 (11%)
 Frame = +3

Query: 414  CLK-LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDRIFP------- 569
            C+K L WRN+PLI+SQCGS+GS  NISQ++ACVGQQSVGG  A + F DR  P       
Sbjct: 550  CMKALPWRNSPLIMSQCGSKGSLINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKDK 609

Query: 570  --TSLGTQPHLMIKDLSRTHS-----------APA*LPLSCSFILLWQDVKVLWILRLHV 710
               + G   H     LS T                 +  + +  +  + +K L  L +H 
Sbjct: 610  TPAAKGFVSHSFYDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHY 669

Query: 711  S*TDQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAI 890
              T ++                  +IQF YGDDGMDP+ MEGK+G+PL+F+RL+LKAKA 
Sbjct: 670  DNTVRNASAC--------------IIQFCYGDDGMDPAHMEGKNGAPLNFERLFLKAKAT 715

Query: 891  RPS-----LSPKEIKKLTDARL*AHDMTPEGDCSETFKISL 998
             P+     LSP+++ +L ++RL   DMTPEG CS  FK SL
Sbjct: 716  CPAGGTEKLSPEKVSELVESRLSKKDMTPEGGCSAAFKNSL 756



 Score = 33.5 bits (75), Expect(3) = 1e-33
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +1

Query: 316 SAQTLESELTYLLNGFREKTGKVCM 390
           +AQ+LE+ +T +LN  RE+TGK+CM
Sbjct: 527 AAQSLEAVITGILNKIREETGKLCM 551



 Score = 22.3 bits (46), Expect(3) = 1e-33
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 260 DALLQKYKNGTLIVQPSCD 316
           D  ++ YK G L  +P CD
Sbjct: 508 DDKIKSYKEGNLPPEPGCD 526



 Score = 54.7 bits (130), Expect(2) = 3e-11
 Identities = 25/42 (59%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSY-KQVQRN 129
           +PVE WTGKQLFSVL+ P A +RV +NLT+ EK+Y  ++Q N
Sbjct: 366 KPVELWTGKQLFSVLVRPNANVRVFLNLTVREKNYSNKLQEN 407



 Score = 42.0 bits (97), Expect(2) = 3e-11
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +2

Query: 125 ETLCPNEGFVYIQNSELICGQVGKATL 205
           ET+CP +GFV  +NSELI GQ+GK TL
Sbjct: 412 ETMCPADGFVCFRNSELISGQLGKGTL 438


>ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nelumbo
            nucifera]
          Length = 1392

 Score =  139 bits (349), Expect(2) = 3e-33
 Identities = 94/245 (38%), Positives = 123/245 (50%), Gaps = 25/245 (10%)
 Frame = +3

Query: 420  KLHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY--------------------PA 539
            +LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG                     PA
Sbjct: 774  ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPA 833

Query: 540  SSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHVS*T 719
            +  F    F T L            R       +  + +  +  + +K L  L ++   T
Sbjct: 834  AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLAVYYDDT 893

Query: 720  DQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRP- 896
             ++                 GV+QFLYGDDG+DP+ MEGK G PL+ +R+YLK KA  P 
Sbjct: 894  VRNASG--------------GVVQFLYGDDGLDPANMEGKKGIPLNLERVYLKTKATCPS 939

Query: 897  ----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCITSL 1064
                SL P EI K+ D R+  +DMTP+G CS  FK  L+D           F+   I+ L
Sbjct: 940  GTNASLCPSEIVKILDDRISRYDMTPDGGCSSAFKKLLVD-----------FIQNRISIL 988

Query: 1065 TNTRK 1079
             NTRK
Sbjct: 989  RNTRK 993



 Score = 32.0 bits (71), Expect(2) = 3e-33
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 316 SAQTLESELTYLLNGFREKTGKVCM 390
           +AQTLE+++T  LN  RE+T  VCM
Sbjct: 748 AAQTLEAQITRKLNEIREETAAVCM 772



 Score = 55.8 bits (133), Expect(2) = 3e-14
 Identities = 23/28 (82%), Positives = 27/28 (96%)
 Frame = +2

Query: 122 KETLCPNEGFVYIQNSELICGQVGKATL 205
           KET+CPN+GFVY +NSELICGQ+GKATL
Sbjct: 632 KETMCPNDGFVYFRNSELICGQLGKATL 659



 Score = 51.2 bits (121), Expect(2) = 3e-14
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVP 138
           +P+E WTGKQLFSVL+ P A +RV +NLT+ EK+  + +    P
Sbjct: 594 KPIELWTGKQLFSVLVRPHAHMRVYLNLTVLEKNCVKQKETMCP 637


>ref|XP_006828249.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Amborella trichopoda] gi|548832896|gb|ERM95665.1|
            hypothetical protein AMTR_s00023p00196820 [Amborella
            trichopoda]
          Length = 1383

 Score =  132 bits (332), Expect(2) = 2e-32
 Identities = 89/218 (40%), Positives = 109/218 (50%), Gaps = 25/218 (11%)
 Frame = +3

Query: 420  KLHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY--------------------PA 539
            +LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG                     PA
Sbjct: 761  ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPA 820

Query: 540  SSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHVS*T 719
            +  F    F T L            R       +  + +  L  + +K L  L  H   T
Sbjct: 821  AKGFVANSFYTGLTAAEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDT 880

Query: 720  DQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRP- 896
             ++                  +IQF YGDDGMDP+KMEGK G PL+ DRL++K KA  P 
Sbjct: 881  VRNSSGT--------------IIQFSYGDDGMDPAKMEGKSGVPLNLDRLFMKIKATCPA 926

Query: 897  ----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISL 998
                SLSP EI  + + RL  HDMTPE  CS  FK  L
Sbjct: 927  SVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKEEL 964



 Score = 35.8 bits (81), Expect(2) = 2e-32
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 316 SAQTLESELTYLLNGFREKTGKVCM 390
           +AQTLE+E+T +LNG R+   KVCM
Sbjct: 735 AAQTLEAEITRVLNGIRDAAAKVCM 759



 Score = 53.9 bits (128), Expect(2) = 4e-13
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQ 117
           +PVE WTGKQLFSVLI P A ++V VNL+L EK+Y +
Sbjct: 581 KPVELWTGKQLFSVLIRPHAHMKVYVNLSLMEKNYSK 617



 Score = 49.3 bits (116), Expect(2) = 4e-13
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +2

Query: 92  LSRKNLTSRCKETLCPNEGFVYIQNSELICGQVGKATL 205
           L  KN  S+  ET+C N+GFVYI+NSELI GQ+GKATL
Sbjct: 610 LMEKNY-SKGGETMCANDGFVYIRNSELISGQLGKATL 646


>ref|XP_011627269.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Amborella trichopoda]
          Length = 1367

 Score =  132 bits (332), Expect(2) = 2e-32
 Identities = 89/218 (40%), Positives = 109/218 (50%), Gaps = 25/218 (11%)
 Frame = +3

Query: 420  KLHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY--------------------PA 539
            +LHWRN+PLI+SQCGS+GSP NISQ+IACVGQQSVGG                     PA
Sbjct: 761  ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPA 820

Query: 540  SSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHVS*T 719
            +  F    F T L            R       +  + +  L  + +K L  L  H   T
Sbjct: 821  AKGFVANSFYTGLTAAEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDT 880

Query: 720  DQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRP- 896
             ++                  +IQF YGDDGMDP+KMEGK G PL+ DRL++K KA  P 
Sbjct: 881  VRNSSGT--------------IIQFSYGDDGMDPAKMEGKSGVPLNLDRLFMKIKATCPA 926

Query: 897  ----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISL 998
                SLSP EI  + + RL  HDMTPE  CS  FK  L
Sbjct: 927  SVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKEEL 964



 Score = 35.8 bits (81), Expect(2) = 2e-32
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 316 SAQTLESELTYLLNGFREKTGKVCM 390
           +AQTLE+E+T +LNG R+   KVCM
Sbjct: 735 AAQTLEAEITRVLNGIRDAAAKVCM 759



 Score = 53.9 bits (128), Expect(2) = 4e-13
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQ 117
           +PVE WTGKQLFSVLI P A ++V VNL+L EK+Y +
Sbjct: 581 KPVELWTGKQLFSVLIRPHAHMKVYVNLSLMEKNYSK 617



 Score = 49.3 bits (116), Expect(2) = 4e-13
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +2

Query: 92  LSRKNLTSRCKETLCPNEGFVYIQNSELICGQVGKATL 205
           L  KN  S+  ET+C N+GFVYI+NSELI GQ+GKATL
Sbjct: 610 LMEKNY-SKGGETMCANDGFVYIRNSELISGQLGKATL 646


>gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tulipifera]
          Length = 546

 Score =  132 bits (333), Expect(2) = 2e-31
 Identities = 91/245 (37%), Positives = 121/245 (49%), Gaps = 26/245 (10%)
 Frame = +3

Query: 423  LHWRNNPLIISQCGSRGSPDNISQIIACV------GQQSVGGY--------------PAS 542
            LHWRN+PLI+SQCGS+GSP NISQ++ACV      G+++  G+              P++
Sbjct: 264  LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPINSKTPSA 323

Query: 543  SRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHVS*TD 722
              F    F T L            R       +  + +  +  + +K L  L  +   T 
Sbjct: 324  KGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDETV 383

Query: 723  QSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRP-- 896
            ++                 G++Q LYGDDGMDP+ MEGK+G PL+ DRL++K KA  P  
Sbjct: 384  RNSSG--------------GIVQLLYGDDGMDPANMEGKEGMPLNLDRLFMKTKATFPAT 429

Query: 897  ----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCITSL 1064
                SLSP EI K  D RL  HDMTPEG CS  FK SL D           FL KC+ +L
Sbjct: 430  RAHTSLSPSEILKAADDRLSKHDMTPEGGCSAAFKESLSD-----------FLKKCVVAL 478

Query: 1065 TNTRK 1079
              TR+
Sbjct: 479  RKTRR 483



 Score = 32.3 bits (72), Expect(2) = 2e-31
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 316 SAQTLESELTYLLNGFREKTGKVCMGT 396
           +AQTLES +T  LN  RE   KVCM +
Sbjct: 237 AAQTLESNITGKLNDIREAAAKVCMAS 263



 Score = 53.5 bits (127), Expect(2) = 4e-14
 Identities = 21/31 (67%), Positives = 29/31 (93%)
 Frame = +2

Query: 113 SRCKETLCPNEGFVYIQNSELICGQVGKATL 205
           S+ K+T+CPN+G+VY +NSEL+CGQ+GKATL
Sbjct: 118 SKDKKTMCPNDGYVYFRNSELLCGQLGKATL 148



 Score = 53.1 bits (126), Expect(2) = 4e-14
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSY 111
           +P+E WTGKQLFSVLI P A++RV +NLTL E+ Y
Sbjct: 81  KPIELWTGKQLFSVLIRPHARMRVYLNLTLTERIY 115


>ref|XP_009402242.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Musa
            acuminata subsp. malaccensis]
          Length = 1372

 Score =  134 bits (337), Expect(2) = 1e-30
 Identities = 90/245 (36%), Positives = 124/245 (50%), Gaps = 25/245 (10%)
 Frame = +3

Query: 420  KLHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGY--------------------PA 539
            +LHWRN+PLI+SQCGS+GSP NISQ+++CVGQQSVGG                     PA
Sbjct: 754  ELHWRNSPLIMSQCGSKGSPINISQMVSCVGQQSVGGRRAPNGFIDRTLPHFPINSKTPA 813

Query: 540  SSRFTDRIFPTSLGTQPHLMIKDLSRTHSAPA*LPLSCSFILLWQDVKVLWILRLHVS*T 719
            +  F    F T L            R       +  + +  +  + +K L  L ++   T
Sbjct: 814  AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSIYYDET 873

Query: 720  DQSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRP- 896
             ++                 G++QFLYGDDGMDP+KMEGKDG PL+ D+L++K  A  P 
Sbjct: 874  VRNASG--------------GIVQFLYGDDGMDPAKMEGKDGIPLNMDQLFMKVMATCPP 919

Query: 897  ----SLSPKEIKKLTDARL*AHDMTPEGDCSETFKISLLDDEAFKEGKQGGFLYKCITSL 1064
                 LSP E  ++ D RL  +DM+PEG CS  FK  L D           F++K +++L
Sbjct: 920  REHDMLSPTEALRIMDDRLAKYDMSPEGGCSAAFKKLLSD-----------FVHKRVSAL 968

Query: 1065 TNTRK 1079
             N RK
Sbjct: 969  ANMRK 973



 Score = 28.1 bits (61), Expect(2) = 1e-30
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 316 SAQTLESELTYLLNGFREKTGKVCM 390
           +AQTLE ++T +LN  R   G VCM
Sbjct: 728 AAQTLELKITGVLNQIRAIAGNVCM 752



 Score = 49.3 bits (116), Expect(2) = 2e-11
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +2

Query: 125 ETLCPNEGFVYIQNSELICGQVGKATL 205
           ET+CP++G+VY +NSELICGQ+GK TL
Sbjct: 613 ETMCPSDGYVYFRNSELICGQLGKVTL 639



 Score = 48.5 bits (114), Expect(2) = 2e-11
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +1

Query: 7   QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSY 111
           +P+E WTGKQLFSVLI P A+ +V +NL + EK Y
Sbjct: 575 KPIELWTGKQLFSVLIRPNARTKVFLNLMVKEKIY 609


>ref|XP_009126624.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Brassica
            rapa] gi|674924172|emb|CDY09230.1| BnaA02g06560D
            [Brassica napus]
          Length = 1370

 Score =  102 bits (255), Expect(2) = 2e-29
 Identities = 67/181 (37%), Positives = 92/181 (50%), Gaps = 20/181 (11%)
 Frame = +3

Query: 423  LHWRNNPLIISQCGSRGSPDNISQIIACVGQQSVGGYPASSRFTDRIF---------PTS 575
            LHWRN+PLI+SQCGS+GSP NISQ++ CVGQQ+V G  A   F DR           P +
Sbjct: 765  LHWRNSPLIMSQCGSKGSPINISQMVTCVGQQTVNGSRAPDGFIDRSLPHFPRMSRTPEA 824

Query: 576  LGTQPHLMIKDLSRTHS-----------APA*LPLSCSFILLWQDVKVLWILRLHVS*TD 722
             G   +     LS T                 +  + +  +  + +K L  L +H   T 
Sbjct: 825  KGFVANSFYDGLSATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTV 884

Query: 723  QSLGRXXXXXXXXXXXX*CGVIQFLYGDDGMDPSKMEGKDGSPLDFDRLYLKAKAIRPSL 902
            ++                  ++QF YGDDGMDP+ MEGK+G+PL+FDRL+LK +A  P  
Sbjct: 885  RNASG--------------SILQFTYGDDGMDPALMEGKNGTPLNFDRLFLKIQATCPPR 930

Query: 903  S 905
            S
Sbjct: 931  S 931



 Score = 55.1 bits (131), Expect(2) = 2e-29
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 55/183 (30%)
 Frame = +1

Query: 7    QPVEFWTGKQLFSVLIHPRAQIRVCVNLTLAEKSYKQVQRNFVPERRVCL---------- 156
            +P+E WTGKQ+F+VL+ P A +RV V L + EK++++ +     +  +C+          
Sbjct: 587  KPIELWTGKQVFNVLLRPNASVRVYVTLNVKEKNFRKGEHY---DETMCINDGWVYFRNS 643

Query: 157  ---------------------------YSE**TYLWASW*SYFSARWIGAMG-------- 231
                                       Y+     +  +  +  SARWIG  G        
Sbjct: 644  ELISGQLGKATLGNGSKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDV 703

Query: 232  ----------S*LVLKTNK*CTSSEIQKWDTYSSTKL*SAQTLESELTYLLNGFREKTGK 381
                        +V +  K C   E+ K   Y    L +A+TLE+ LT  LN  RE+TGK
Sbjct: 704  QPGKKLKEDREVIVKRRYKDC--DELLK--NYEKGDLDAAKTLEANLTGFLNKIREETGK 759

Query: 382  VCM 390
            +CM
Sbjct: 760  LCM 762