BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00053645
         (1045 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010656269.1| PREDICTED: probable RNA-dependent RNA polyme...   298   5e-78
ref|XP_010656270.1| PREDICTED: probable RNA-dependent RNA polyme...   298   5e-78
ref|XP_008791538.1| PREDICTED: probable RNA-dependent RNA polyme...   280   1e-72
ref|XP_008791530.1| PREDICTED: probable RNA-dependent RNA polyme...   280   1e-72
ref|XP_008791522.1| PREDICTED: probable RNA-dependent RNA polyme...   280   1e-72
ref|XP_009385774.1| PREDICTED: probable RNA-dependent RNA polyme...   280   2e-72
ref|XP_009385773.1| PREDICTED: probable RNA-dependent RNA polyme...   280   2e-72
ref|XP_009385772.1| PREDICTED: probable RNA-dependent RNA polyme...   280   2e-72
ref|XP_009385771.1| PREDICTED: probable RNA-dependent RNA polyme...   280   2e-72
gb|AIO05710.1| putative RNA-dependent RNA polymerase 5, partial ...   278   5e-72
emb|CDX82754.1| BnaC07g01120D [Brassica napus]                        271   6e-70
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   271   8e-70
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   271   8e-70
ref|XP_011008583.1| PREDICTED: probable RNA-dependent RNA polyme...   270   1e-69
ref|XP_011025605.1| PREDICTED: probable RNA-dependent RNA polyme...   270   1e-69
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   269   2e-69
gb|KFK40361.1| hypothetical protein AALP_AA3G363800 [Arabis alpina]   268   4e-69
ref|XP_012472350.1| PREDICTED: probable RNA-dependent RNA polyme...   267   9e-69
ref|XP_012472313.1| PREDICTED: probable RNA-dependent RNA polyme...   267   9e-69
ref|XP_012472264.1| PREDICTED: probable RNA-dependent RNA polyme...   267   9e-69

>ref|XP_010656269.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Vitis
            vinifera]
          Length = 954

 Score =  298 bits (763), Expect = 5e-78
 Identities = 172/364 (47%), Positives = 222/364 (60%), Gaps = 17/364 (4%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVP+EYF+ LL D   +    Q  +RAA R SL +G MDD ++T+MI+SG+ + 
Sbjct: 486  ALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPID 545

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FCD-------V 705
            EP+L   LS ++ E+ K L+  KLP+ND +YLMGTADPT      +     D       V
Sbjct: 546  EPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRV 605

Query: 704  LVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYR 525
            LVYKHPGLHFGDIHVL ATYV  LE +VG+AK  I FPI G RS+ADE+ANSD DGDMY 
Sbjct: 606  LVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYW 665

Query: 524  VCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVG 345
            V RN QLL +FR S PW +    ++V   +PTDF   D+LEH LF+  LT  F +S+ +G
Sbjct: 666  VSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDF-SPDELEHELFQLFLTTRFQTSSAIG 724

Query: 344  VSANWWLSLMDTRLTL-----DKSDAVKIK-----DVEGKLLHATKSGKKVQIPLKLKPH 195
            ++A+ WL  MD  LTL     D+ + +K K     D+    L A KSG KV +  +LK  
Sbjct: 725  MAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAE 784

Query: 194  INPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLPS 15
              PHFM ++SS                YHS S+LG +YD VESF+   +Q   E+ +LP 
Sbjct: 785  KFPHFMGRESS----------------YHSTSILGQIYDAVESFQPE-NQSTKEIWRLPL 827

Query: 14   FEQD 3
            F  D
Sbjct: 828  FNID 831


>ref|XP_010656270.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Vitis
            vinifera] gi|297738765|emb|CBI28010.3| unnamed protein
            product [Vitis vinifera]
          Length = 929

 Score =  298 bits (763), Expect = 5e-78
 Identities = 172/364 (47%), Positives = 222/364 (60%), Gaps = 17/364 (4%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVP+EYF+ LL D   +    Q  +RAA R SL +G MDD ++T+MI+SG+ + 
Sbjct: 461  ALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPID 520

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FCD-------V 705
            EP+L   LS ++ E+ K L+  KLP+ND +YLMGTADPT      +     D       V
Sbjct: 521  EPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRV 580

Query: 704  LVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYR 525
            LVYKHPGLHFGDIHVL ATYV  LE +VG+AK  I FPI G RS+ADE+ANSD DGDMY 
Sbjct: 581  LVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYW 640

Query: 524  VCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVG 345
            V RN QLL +FR S PW +    ++V   +PTDF   D+LEH LF+  LT  F +S+ +G
Sbjct: 641  VSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDF-SPDELEHELFQLFLTTRFQTSSAIG 699

Query: 344  VSANWWLSLMDTRLTL-----DKSDAVKIK-----DVEGKLLHATKSGKKVQIPLKLKPH 195
            ++A+ WL  MD  LTL     D+ + +K K     D+    L A KSG KV +  +LK  
Sbjct: 700  MAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAE 759

Query: 194  INPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLPS 15
              PHFM ++SS                YHS S+LG +YD VESF+   +Q   E+ +LP 
Sbjct: 760  KFPHFMGRESS----------------YHSTSILGQIYDAVESFQPE-NQSTKEIWRLPL 802

Query: 14   FEQD 3
            F  D
Sbjct: 803  FNID 806


>ref|XP_008791538.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X3
            [Phoenix dactylifera]
          Length = 957

 Score =  280 bits (717), Expect = 1e-72
 Identities = 162/364 (44%), Positives = 221/364 (60%), Gaps = 20/364 (5%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALL YGGVP EYFLELL +   + +  Q +++AA R +L YG MDDFL+ +MI+ G+ L 
Sbjct: 481  ALLHYGGVPKEYFLELLMNALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLG 540

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC--------- 711
            EPYL+ RL VL RE++K LKE KLP+++ YYLMG+ DPT     +K    C         
Sbjct: 541  EPYLQSRLLVLRREEMKALKEGKLPVSECYYLMGSVDPT---GTLKPNEVCIILENGHVS 597

Query: 710  -DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGD 534
             DVLVY+ PGLHFGD+H+LTATYV +L+  VG++K  ILF   G RS+ADE+A  D DGD
Sbjct: 598  GDVLVYRQPGLHFGDMHILTATYVKDLDKIVGNSKYAILFSTKGPRSLADEMAGGDFDGD 657

Query: 533  MYRVCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            MY V RN QLL +F+ S PW +T     V+ LKPT F +  +LE  LFE+ L   F  S 
Sbjct: 658  MYWVSRNPQLLKYFKASKPWVRTAPRIKVTQLKPTQFSN-TELERELFEQFLINRFKPSY 716

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             +G +++ WL  MD  LTL           +   +++ D+    L A+KSG K+++P +L
Sbjct: 717  TIGTASDCWLMYMDRLLTLGDECAKQKQLLREKMLELVDIYYDALDASKSGLKIEVPSEL 776

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDK 24
            KP   P+FM KK            L KD  Y SKS+ GL+Y++V+   ++ D    E+ +
Sbjct: 777  KPDQFPNFMEKK-----------YLDKDKEYESKSIFGLIYEKVK-LSQTKDLSSNEIWQ 824

Query: 23   LPSF 12
            LP F
Sbjct: 825  LPCF 828


>ref|XP_008791530.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
            [Phoenix dactylifera]
          Length = 981

 Score =  280 bits (717), Expect = 1e-72
 Identities = 162/364 (44%), Positives = 221/364 (60%), Gaps = 20/364 (5%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALL YGGVP EYFLELL +   + +  Q +++AA R +L YG MDDFL+ +MI+ G+ L 
Sbjct: 505  ALLHYGGVPKEYFLELLMNALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLG 564

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC--------- 711
            EPYL+ RL VL RE++K LKE KLP+++ YYLMG+ DPT     +K    C         
Sbjct: 565  EPYLQSRLLVLRREEMKALKEGKLPVSECYYLMGSVDPT---GTLKPNEVCIILENGHVS 621

Query: 710  -DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGD 534
             DVLVY+ PGLHFGD+H+LTATYV +L+  VG++K  ILF   G RS+ADE+A  D DGD
Sbjct: 622  GDVLVYRQPGLHFGDMHILTATYVKDLDKIVGNSKYAILFSTKGPRSLADEMAGGDFDGD 681

Query: 533  MYRVCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            MY V RN QLL +F+ S PW +T     V+ LKPT F +  +LE  LFE+ L   F  S 
Sbjct: 682  MYWVSRNPQLLKYFKASKPWVRTAPRIKVTQLKPTQFSN-TELERELFEQFLINRFKPSY 740

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             +G +++ WL  MD  LTL           +   +++ D+    L A+KSG K+++P +L
Sbjct: 741  TIGTASDCWLMYMDRLLTLGDECAKQKQLLREKMLELVDIYYDALDASKSGLKIEVPSEL 800

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDK 24
            KP   P+FM KK            L KD  Y SKS+ GL+Y++V+   ++ D    E+ +
Sbjct: 801  KPDQFPNFMEKK-----------YLDKDKEYESKSIFGLIYEKVK-LSQTKDLSSNEIWQ 848

Query: 23   LPSF 12
            LP F
Sbjct: 849  LPCF 852


>ref|XP_008791522.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
            [Phoenix dactylifera]
          Length = 1006

 Score =  280 bits (717), Expect = 1e-72
 Identities = 162/364 (44%), Positives = 221/364 (60%), Gaps = 20/364 (5%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALL YGGVP EYFLELL +   + +  Q +++AA R +L YG MDDFL+ +MI+ G+ L 
Sbjct: 530  ALLHYGGVPKEYFLELLMNALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLG 589

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC--------- 711
            EPYL+ RL VL RE++K LKE KLP+++ YYLMG+ DPT     +K    C         
Sbjct: 590  EPYLQSRLLVLRREEMKALKEGKLPVSECYYLMGSVDPT---GTLKPNEVCIILENGHVS 646

Query: 710  -DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGD 534
             DVLVY+ PGLHFGD+H+LTATYV +L+  VG++K  ILF   G RS+ADE+A  D DGD
Sbjct: 647  GDVLVYRQPGLHFGDMHILTATYVKDLDKIVGNSKYAILFSTKGPRSLADEMAGGDFDGD 706

Query: 533  MYRVCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            MY V RN QLL +F+ S PW +T     V+ LKPT F +  +LE  LFE+ L   F  S 
Sbjct: 707  MYWVSRNPQLLKYFKASKPWVRTAPRIKVTQLKPTQFSN-TELERELFEQFLINRFKPSY 765

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             +G +++ WL  MD  LTL           +   +++ D+    L A+KSG K+++P +L
Sbjct: 766  TIGTASDCWLMYMDRLLTLGDECAKQKQLLREKMLELVDIYYDALDASKSGLKIEVPSEL 825

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDK 24
            KP   P+FM KK            L KD  Y SKS+ GL+Y++V+   ++ D    E+ +
Sbjct: 826  KPDQFPNFMEKK-----------YLDKDKEYESKSIFGLIYEKVK-LSQTKDLSSNEIWQ 873

Query: 23   LPSF 12
            LP F
Sbjct: 874  LPCF 877


>ref|XP_009385774.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X4 [Musa
            acuminata subsp. malaccensis]
          Length = 802

 Score =  280 bits (715), Expect = 2e-72
 Identities = 163/367 (44%), Positives = 223/367 (60%), Gaps = 21/367 (5%)
 Frame = -3

Query: 1040 LLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLSE 861
            LL YGGVP E+FLELL +   + +  +  ++AA R +L YG MDDFL+++MI+ G+ L E
Sbjct: 331  LLHYGGVPKEFFLELLMNSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDE 390

Query: 860  PYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC---------- 711
            PYL+ RLS+LMRE+ K+LK  KLP+ D YYLMGT DPT +   +K    C          
Sbjct: 391  PYLQFRLSILMREERKSLKTGKLPVMDCYYLMGTVDPTGL---LKPNEVCVILENGQVSG 447

Query: 710  DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDM 531
            DVLVYKHPGLHFGD+HVLTATY  +LE +VG +K  I FP  G RS+ADE+ANSD DGDM
Sbjct: 448  DVLVYKHPGLHFGDVHVLTATYNKDLEKFVGYSKYAIFFPTKGPRSLADEMANSDFDGDM 507

Query: 530  YRVCRNTQLLNWFRPSTPWTQT-YFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            Y V RN+QLL +FR S PWT T    + +   KP +F  + +LE  LF++ L   F  SN
Sbjct: 508  YWVSRNSQLLQYFRSSMPWTPTPSNMRGIQQKKPIEFSSK-ELERELFQQFLINRFKPSN 566

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             V ++++ WLS MD  LTL           K   +++ ++    L A KSG KV++P++L
Sbjct: 567  TVSMASDCWLSYMDRLLTLGDECAEEKECLKEKILQLVNIYYDALDAPKSGVKVEVPIEL 626

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDK 24
            K    PH+M + +S                Y S S+LGL++D+V S  ++ D     + K
Sbjct: 627  KAEKYPHYMERSNS----------------YTSMSILGLIFDKVSSV-QTEDPPSNGISK 669

Query: 23   LPSFEQD 3
            LP F ++
Sbjct: 670  LPCFTEE 676


>ref|XP_009385773.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X3 [Musa
            acuminata subsp. malaccensis]
          Length = 947

 Score =  280 bits (715), Expect = 2e-72
 Identities = 163/367 (44%), Positives = 223/367 (60%), Gaps = 21/367 (5%)
 Frame = -3

Query: 1040 LLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLSE 861
            LL YGGVP E+FLELL +   + +  +  ++AA R +L YG MDDFL+++MI+ G+ L E
Sbjct: 476  LLHYGGVPKEFFLELLMNSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDE 535

Query: 860  PYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC---------- 711
            PYL+ RLS+LMRE+ K+LK  KLP+ D YYLMGT DPT +   +K    C          
Sbjct: 536  PYLQFRLSILMREERKSLKTGKLPVMDCYYLMGTVDPTGL---LKPNEVCVILENGQVSG 592

Query: 710  DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDM 531
            DVLVYKHPGLHFGD+HVLTATY  +LE +VG +K  I FP  G RS+ADE+ANSD DGDM
Sbjct: 593  DVLVYKHPGLHFGDVHVLTATYNKDLEKFVGYSKYAIFFPTKGPRSLADEMANSDFDGDM 652

Query: 530  YRVCRNTQLLNWFRPSTPWTQT-YFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            Y V RN+QLL +FR S PWT T    + +   KP +F  + +LE  LF++ L   F  SN
Sbjct: 653  YWVSRNSQLLQYFRSSMPWTPTPSNMRGIQQKKPIEFSSK-ELERELFQQFLINRFKPSN 711

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             V ++++ WLS MD  LTL           K   +++ ++    L A KSG KV++P++L
Sbjct: 712  TVSMASDCWLSYMDRLLTLGDECAEEKECLKEKILQLVNIYYDALDAPKSGVKVEVPIEL 771

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDK 24
            K    PH+M + +S                Y S S+LGL++D+V S  ++ D     + K
Sbjct: 772  KAEKYPHYMERSNS----------------YTSMSILGLIFDKVSSV-QTEDPPSNGISK 814

Query: 23   LPSFEQD 3
            LP F ++
Sbjct: 815  LPCFTEE 821


>ref|XP_009385772.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 995

 Score =  280 bits (715), Expect = 2e-72
 Identities = 163/367 (44%), Positives = 223/367 (60%), Gaps = 21/367 (5%)
 Frame = -3

Query: 1040 LLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLSE 861
            LL YGGVP E+FLELL +   + +  +  ++AA R +L YG MDDFL+++MI+ G+ L E
Sbjct: 524  LLHYGGVPKEFFLELLMNSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDE 583

Query: 860  PYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC---------- 711
            PYL+ RLS+LMRE+ K+LK  KLP+ D YYLMGT DPT +   +K    C          
Sbjct: 584  PYLQFRLSILMREERKSLKTGKLPVMDCYYLMGTVDPTGL---LKPNEVCVILENGQVSG 640

Query: 710  DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDM 531
            DVLVYKHPGLHFGD+HVLTATY  +LE +VG +K  I FP  G RS+ADE+ANSD DGDM
Sbjct: 641  DVLVYKHPGLHFGDVHVLTATYNKDLEKFVGYSKYAIFFPTKGPRSLADEMANSDFDGDM 700

Query: 530  YRVCRNTQLLNWFRPSTPWTQT-YFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            Y V RN+QLL +FR S PWT T    + +   KP +F  + +LE  LF++ L   F  SN
Sbjct: 701  YWVSRNSQLLQYFRSSMPWTPTPSNMRGIQQKKPIEFSSK-ELERELFQQFLINRFKPSN 759

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             V ++++ WLS MD  LTL           K   +++ ++    L A KSG KV++P++L
Sbjct: 760  TVSMASDCWLSYMDRLLTLGDECAEEKECLKEKILQLVNIYYDALDAPKSGVKVEVPIEL 819

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDK 24
            K    PH+M + +S                Y S S+LGL++D+V S  ++ D     + K
Sbjct: 820  KAEKYPHYMERSNS----------------YTSMSILGLIFDKVSSV-QTEDPPSNGISK 862

Query: 23   LPSFEQD 3
            LP F ++
Sbjct: 863  LPCFTEE 869


>ref|XP_009385771.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 996

 Score =  280 bits (715), Expect = 2e-72
 Identities = 163/367 (44%), Positives = 223/367 (60%), Gaps = 21/367 (5%)
 Frame = -3

Query: 1040 LLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLSE 861
            LL YGGVP E+FLELL +   + +  +  ++AA R +L YG MDDFL+++MI+ G+ L E
Sbjct: 525  LLHYGGVPKEFFLELLMNSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDE 584

Query: 860  PYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC---------- 711
            PYL+ RLS+LMRE+ K+LK  KLP+ D YYLMGT DPT +   +K    C          
Sbjct: 585  PYLQFRLSILMREERKSLKTGKLPVMDCYYLMGTVDPTGL---LKPNEVCVILENGQVSG 641

Query: 710  DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDM 531
            DVLVYKHPGLHFGD+HVLTATY  +LE +VG +K  I FP  G RS+ADE+ANSD DGDM
Sbjct: 642  DVLVYKHPGLHFGDVHVLTATYNKDLEKFVGYSKYAIFFPTKGPRSLADEMANSDFDGDM 701

Query: 530  YRVCRNTQLLNWFRPSTPWTQT-YFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            Y V RN+QLL +FR S PWT T    + +   KP +F  + +LE  LF++ L   F  SN
Sbjct: 702  YWVSRNSQLLQYFRSSMPWTPTPSNMRGIQQKKPIEFSSK-ELERELFQQFLINRFKPSN 760

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             V ++++ WLS MD  LTL           K   +++ ++    L A KSG KV++P++L
Sbjct: 761  TVSMASDCWLSYMDRLLTLGDECAEEKECLKEKILQLVNIYYDALDAPKSGVKVEVPIEL 820

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDK 24
            K    PH+M + +S                Y S S+LGL++D+V S  ++ D     + K
Sbjct: 821  KAEKYPHYMERSNS----------------YTSMSILGLIFDKVSSV-QTEDPPSNGISK 863

Query: 23   LPSFEQD 3
            LP F ++
Sbjct: 864  LPCFTEE 870


>gb|AIO05710.1| putative RNA-dependent RNA polymerase 5, partial [Cocos nucifera]
          Length = 590

 Score =  278 bits (711), Expect = 5e-72
 Identities = 158/345 (45%), Positives = 211/345 (61%), Gaps = 20/345 (5%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALL YGGVP EYFLELL +   + +    +++AA R +L YG MDDFL+ +MI+ G+ LS
Sbjct: 245  ALLHYGGVPKEYFLELLMNALDDAQNVHYNKQAALRVALKYGDMDDFLVARMILCGIPLS 304

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC--------- 711
            EPYL+ RL VLMRE++K LKE KLP+++ Y+LMGT DPT     +K    C         
Sbjct: 305  EPYLQSRLLVLMREEMKALKEGKLPVSECYHLMGTVDPT---GTLKPNEVCIILENGHVS 361

Query: 710  -DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGD 534
             DVLVY+HPGLHFGDIH+LTATYV  L+  VG++K  I F   G RS+ADE+A  D DGD
Sbjct: 362  GDVLVYRHPGLHFGDIHILTATYVKGLDKIVGNSKYAIFFSTKGPRSLADEMAGGDFDGD 421

Query: 533  MYRVCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSN 354
            MY V RN QLL +F+ S PW +T  +  V+  KPT F    +LE  LF++ L   F  S 
Sbjct: 422  MYWVSRNPQLLKYFKASKPWVRTAPSIKVTQSKPTQF-SSTELERELFDQFLINRFMPSY 480

Query: 353  PVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKL 204
             +G +A+ WL  MD  LTL           +   +++ D+    L A+KSG K+++P +L
Sbjct: 481  TIGTAADCWLMYMDRLLTLGDECAEQKQLLREKILELVDIYYDALDASKSGLKIEVPSEL 540

Query: 203  KPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVE 69
            KP   P+FM KK            L KD  Y SKS+ GL+Y++V+
Sbjct: 541  KPDQFPNFMEKK-----------YLDKDKEYESKSIFGLIYEKVK 574


>emb|CDX82754.1| BnaC07g01120D [Brassica napus]
          Length = 861

 Score =  271 bits (693), Expect = 6e-70
 Identities = 159/373 (42%), Positives = 219/373 (58%), Gaps = 28/373 (7%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVPDE+FLE+L +   E K    ++RAA +A+L+YG MDD    +MI++G+ L 
Sbjct: 399  ALLSYGGVPDEFFLEILLNTLEEYKTIFTNKRAALKAALHYGDMDDHEAARMILAGIPLD 458

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC--------- 711
            EPYL+++LS+  + + K+LK  KLP+++SYYLMGT DPT    ++K    C         
Sbjct: 459  EPYLQDQLSIFSKTEKKDLKAGKLPVSESYYLMGTVDPT---GELKEDDVCVILESGQIS 515

Query: 710  -DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGD 534
             +VLVY++PGLHFGDIHVL ATYV  LE YVG++K G+ FP  G RS+ DEIA  D DGD
Sbjct: 516  GNVLVYRNPGLHFGDIHVLKATYVEALEEYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGD 575

Query: 533  MYRVCRNTQLLNWFRPSTPW--------TQTYFAKNVSHLKPTDFKDEDDLEHHLFERCL 378
            +Y + RN +LL  F+PS PW        T+   A+  SHL P       +LE  LF+  L
Sbjct: 576  LYFISRNPELLEHFKPSEPWPWVSLTPPTKGNSARKPSHLSPA------ELEEELFDMFL 629

Query: 377  TAMFSSSNPVGVSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGK 228
             A F++SN +G++A+ WL++MD  LTL           K   +K+ D+    L A K G 
Sbjct: 630  KARFNASNVIGMAADNWLTIMDQFLTLGDEKAEEKAEMKKKMLKLIDICYDALDAPKKGA 689

Query: 227  KVQIPLKLKPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGD 48
             V +P +LKP I PH+M                 +D  + S S+LG++YD V+S      
Sbjct: 690  IVDLPDELKPDIFPHYM----------------ERDQKFDSTSILGMIYDFVDSHTAQEH 733

Query: 47   QLLIEVDKLPSFE 9
              L E+ KL  FE
Sbjct: 734  TPLAEISKLSCFE 746


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  271 bits (692), Expect = 8e-70
 Identities = 156/365 (42%), Positives = 226/365 (61%), Gaps = 18/365 (4%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVP+E+F+ ++N+   +      ++ AA R +LNYG MDD ++  MI  G+ L 
Sbjct: 408  ALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLE 467

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*--NQIKFV*FC-----DV 705
            EPYL+ RLS+LM+E+ K+LK  K+P+ +SYYLMGTADPT +   +++  +  C     +V
Sbjct: 468  EPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEV 527

Query: 704  LVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYR 525
            L+Y++PGLHFGDIH+L ATYV ELE++VG+AK  I FP  G RS+ADE++  D DGDM+ 
Sbjct: 528  LIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFF 587

Query: 524  VCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVG 345
            V RN QLL  F+ + PWT +    NV + KP++F DE +LE  LF+  L   F  S+ VG
Sbjct: 588  VSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDE-ELEVELFKLFLRNRFQPSSTVG 646

Query: 344  VSANWWLSLMDTRLTLDKSDAVKIK----------DVEGKLLHA-TKSGKKVQIPLKLKP 198
            V+A+ WL++MD  LTL    A +I           D+    L A  K G+++++P  LK 
Sbjct: 647  VAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKA 706

Query: 197  HINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLP 18
             + PHFM K               +   Y S S+LG +YD+V+++E+  D    +V KLP
Sbjct: 707  ELFPHFMGK--------------NEKKTYRSTSILGKIYDKVKAYEDM-DLSSNDVWKLP 751

Query: 17   SFEQD 3
             F+ +
Sbjct: 752  CFDDE 756


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  271 bits (692), Expect = 8e-70
 Identities = 156/365 (42%), Positives = 226/365 (61%), Gaps = 18/365 (4%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVP+E+F+ ++N+   +      ++ AA R +LNYG MDD ++  MI  G+ L 
Sbjct: 430  ALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLE 489

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*--NQIKFV*FC-----DV 705
            EPYL+ RLS+LM+E+ K+LK  K+P+ +SYYLMGTADPT +   +++  +  C     +V
Sbjct: 490  EPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEV 549

Query: 704  LVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYR 525
            L+Y++PGLHFGDIH+L ATYV ELE++VG+AK  I FP  G RS+ADE++  D DGDM+ 
Sbjct: 550  LIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFF 609

Query: 524  VCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVG 345
            V RN QLL  F+ + PWT +    NV + KP++F DE +LE  LF+  L   F  S+ VG
Sbjct: 610  VSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDE-ELEVELFKLFLRNRFQPSSTVG 668

Query: 344  VSANWWLSLMDTRLTLDKSDAVKIK----------DVEGKLLHA-TKSGKKVQIPLKLKP 198
            V+A+ WL++MD  LTL    A +I           D+    L A  K G+++++P  LK 
Sbjct: 669  VAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKA 728

Query: 197  HINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLP 18
             + PHFM K               +   Y S S+LG +YD+V+++E+  D    +V KLP
Sbjct: 729  ELFPHFMGK--------------NEKKTYRSTSILGKIYDKVKAYEDM-DLSSNDVWKLP 773

Query: 17   SFEQD 3
             F+ +
Sbjct: 774  CFDDE 778


>ref|XP_011008583.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Populus
            euphratica]
          Length = 877

 Score =  270 bits (690), Expect = 1e-69
 Identities = 155/365 (42%), Positives = 225/365 (61%), Gaps = 18/365 (4%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVP+E+F+ +LN+   +      ++ AA R +LNYG MDD ++  MI  G+ L 
Sbjct: 408  ALLSYGGVPEEFFMGILNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMICCGIPLE 467

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*--NQIKFV*FC-----DV 705
            EPYL+  LS+LM+E+ K+LK  KLP+ +SYYLMGTADPT +   +++  +  C     +V
Sbjct: 468  EPYLQHHLSILMKEEKKSLKGGKLPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEV 527

Query: 704  LVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYR 525
            LVY++PGLHFGDIH+L ATYV ELE+++G+AK  I FP  G RS+ADE++  D DGDM+ 
Sbjct: 528  LVYRNPGLHFGDIHILKATYVRELEDFIGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFF 587

Query: 524  VCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVG 345
            V RN QLL  F+ + PWT +    NV + KP++F DE +LE  LF+  L   F  S+ VG
Sbjct: 588  VSRNPQLLKNFKQTEPWTPSTSTPNVPNRKPSEFSDE-ELEVELFKLFLRNRFQPSSTVG 646

Query: 344  VSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHA-TKSGKKVQIPLKLKP 198
            V+A+ WL++MD  LTL           K +   + D+    L A  K G+++++P  LK 
Sbjct: 647  VAADSWLAMMDRVLTLGNDCTEEIACVKENINLLIDIYYDALDAPKKGGRRIEVPEALKA 706

Query: 197  HINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLP 18
             + PHFM K               ++  Y S S+LG +YD+V+++E+  D    +V K P
Sbjct: 707  ELFPHFMEK--------------NENKTYRSTSILGKIYDKVKAYEDM-DLSSNDVWKHP 751

Query: 17   SFEQD 3
             F+ +
Sbjct: 752  CFDDE 756


>ref|XP_011025605.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Populus
            euphratica] gi|743837972|ref|XP_011025606.1| PREDICTED:
            probable RNA-dependent RNA polymerase 5 [Populus
            euphratica]
          Length = 1010

 Score =  270 bits (690), Expect = 1e-69
 Identities = 157/365 (43%), Positives = 227/365 (62%), Gaps = 18/365 (4%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVP+E+F+ +LN+   +      ++ AA R +LNYG MDD ++  MI  G+ L 
Sbjct: 541  ALLSYGGVPEEFFMGILNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLE 600

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*--NQIKFV*FC-----DV 705
            EPYL+ RLS+LM+E+ K+LK  K+P+ +SYYLMGTADPT +   +++  +  C     +V
Sbjct: 601  EPYLQHRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEV 660

Query: 704  LVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYR 525
            LVY++PGLH GDIH+L A YV ELE++VG+AK  I FP  G RS+ADE++  D DGDM+ 
Sbjct: 661  LVYRNPGLHVGDIHILKAKYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFF 720

Query: 524  VCRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVG 345
            V RN QLL +F+ + PWT +    NV + KP++F DE +LE  LF+  L   F  S+ VG
Sbjct: 721  VSRNPQLLGYFKQTEPWTPSTSTPNVPNRKPSEFSDE-ELEVELFKLFLRNRFQPSSTVG 779

Query: 344  VSANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATK-SGKKVQIPLKLKP 198
            V+A+ WL++MD  LTL           K +   + D+    L A K  G+++++P  LK 
Sbjct: 780  VAADSWLAMMDRVLTLGNDCTEEIACVKENINLLIDIYYDALDAPKRGGRRIEVPEGLKA 839

Query: 197  HINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLP 18
             + PHFM        G N  Q+      Y S S+LG +YD+V+++E+  D    +V KLP
Sbjct: 840  ELFPHFM--------GKNEKQT------YRSTSILGKIYDKVKAYEDM-DLSSNDVWKLP 884

Query: 17   SFEQD 3
             F+ +
Sbjct: 885  CFDDE 889


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  269 bits (688), Expect = 2e-69
 Identities = 160/368 (43%), Positives = 218/368 (59%), Gaps = 21/368 (5%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVP+E+FL+LL +   ETK    ++RAA +A+LN+G MDD    +MI+ G+ L 
Sbjct: 522  ALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAALNHGDMDDQNAAQMILVGIPLD 581

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC--------- 711
            EP+LK+RLS+L   +  +LK  +LP+ +SYYLMGT DPT    ++K    C         
Sbjct: 582  EPHLKDRLSILSNIEKNDLKAGRLPVTESYYLMGTVDPT---GELKEDEVCVILESGQIS 638

Query: 710  -DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGD 534
             DVLVY++PG+HFGDIHVL ATYV  LE YVG++K  + FP  G RS+ DEIA  D DGD
Sbjct: 639  GDVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGD 698

Query: 533  MYRVCRNTQLLNWFRPSTPWTQ-TYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSS 357
            MY + RN +LL  F+PS PW   +  +K+ S  KP DF  E +LE  LF+  L A F SS
Sbjct: 699  MYFISRNPELLEQFKPSEPWVSLSPPSKSNSTRKPIDFSPE-ELEEELFDMFLKARFHSS 757

Query: 356  NPVGVSANWWLSLMDTRLTLDKSDAVKIKDVEGKL----------LHATKSGKKVQIPLK 207
            N +G++A+ WL++MD  LTL    A +  +++ K+          L A K G KV +P  
Sbjct: 758  NVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKVSLPDA 817

Query: 206  LKPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVD 27
            LKP I PH+M                 +D  + S S+LG++YD V+S          E+ 
Sbjct: 818  LKPDIFPHYM----------------ERDKKFKSTSILGIIYDFVQSQTAEEHTPSSEIS 861

Query: 26   KLPSFEQD 3
            KL  FE +
Sbjct: 862  KLQCFEDE 869


>gb|KFK40361.1| hypothetical protein AALP_AA3G363800 [Arabis alpina]
          Length = 966

 Score =  268 bits (686), Expect = 4e-69
 Identities = 155/369 (42%), Positives = 220/369 (59%), Gaps = 22/369 (5%)
 Frame = -3

Query: 1043 ALLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLS 864
            ALLSYGGVPD++F+ +L +   E+K    ++R+A + +L YG MDD+   +MI+ G+ L 
Sbjct: 496  ALLSYGGVPDDFFMNILLNTLEESKTIFYNKRSALKTALKYGEMDDYNAAEMILVGIPLD 555

Query: 863  EPYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FC--------- 711
            EP+LK  LS L++ +  +LKE KLP+++SYYLMGT DPT    ++K    C         
Sbjct: 556  EPHLKSHLSTLLKTEKNSLKEGKLPVSESYYLMGTVDPT---GELKEDEVCVILESGQIS 612

Query: 710  -DVLVYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGD 534
             DVLVY++PGLHFGDIHVL ATYV  LE YVG++K  + FP  G RS+ DEIA  D DGD
Sbjct: 613  GDVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGD 672

Query: 533  MYRVCRNTQLLNWFRPSTPWTQ-TYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSS 357
            +Y + RN +LL  FRPS PW   +  ++++S  +P  F  E DLE+ LF+  L + F SS
Sbjct: 673  LYFISRNPELLAHFRPSEPWVSLSTPSQSISTREPCQFSPE-DLENELFDMFLKSRFYSS 731

Query: 356  NPVGVSANWWLSLMDTRLTLDKSDA----------VKIKDVEGKLLHATKSGKKVQIPLK 207
            + +G++A+ WL++MD  L L    A          +++ D+    L A K G KV +P +
Sbjct: 732  SVIGIAADCWLTIMDRFLVLGNDGAEEKVEMRMKMLQLIDIYYDALDAPKKGAKVDLPSE 791

Query: 206  LKPHINPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQL-LIEV 30
            L+P I PH+M                 +D  + S S+LGL+YD VES +     L   E+
Sbjct: 792  LRPDIFPHYM----------------ERDKTFKSSSILGLIYDFVESQKTEQPSLPSAEI 835

Query: 29   DKLPSFEQD 3
             KLP FE +
Sbjct: 836  TKLPCFEDE 844


>ref|XP_012472350.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X3
            [Gossypium raimondii]
          Length = 1061

 Score =  267 bits (683), Expect = 9e-69
 Identities = 147/360 (40%), Positives = 219/360 (60%), Gaps = 17/360 (4%)
 Frame = -3

Query: 1040 LLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLSE 861
            LLSYGGVPD +F+++L +   E++    ++R A R +LN GG+D+ L  KMI+SG+ L E
Sbjct: 595  LLSYGGVPDNFFMDILKNALEESQGAFSNKRTALRVALNRGGLDELLAAKMILSGIPLDE 654

Query: 860  PYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FCD-------VL 702
             YL+ R+S+++ E+ K L   KLP+ DSY+LMGT DP+ +    +     D       VL
Sbjct: 655  SYLQYRMSIMLNEERKGLLSGKLPITDSYHLMGTVDPSGVLESDEVSIILDNGQISGKVL 714

Query: 701  VYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYRV 522
            VY+HPG+HFGD+H+LTA YV EL+ +VGDAK  I FP  G RS+ADE+A  D DGDM+ V
Sbjct: 715  VYRHPGIHFGDVHILTARYVKELDEFVGDAKYAIFFPCNGPRSLADEMAGGDFDGDMFFV 774

Query: 521  CRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVGV 342
             +N QLL++F+ S PWT+          +P++F DE +LE  LFE  L   F  S  +GV
Sbjct: 775  SKNPQLLDYFKVSEPWTENCTTPEGPSRRPSEFSDE-ELESELFESFLKTRFQPSYAMGV 833

Query: 341  SANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKLKPHI 192
            +A+ W ++MD  LT++          K +  K+ D+  + L A+K+GKKV++P +L+  +
Sbjct: 834  AADNWSAIMDRFLTVEDSNSSEKTLMKENLKKLIDLYYEALDASKTGKKVKVPEELRVAL 893

Query: 191  NPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLPSF 12
             PH+M                 ++N + S S+LG +YD V++++E   +   EV KLP F
Sbjct: 894  FPHYM----------------ERENSFKSTSILGKIYDHVKAYQEEVSRK--EVRKLPFF 935


>ref|XP_012472313.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
            [Gossypium raimondii]
          Length = 1063

 Score =  267 bits (683), Expect = 9e-69
 Identities = 147/360 (40%), Positives = 219/360 (60%), Gaps = 17/360 (4%)
 Frame = -3

Query: 1040 LLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLSE 861
            LLSYGGVPD +F+++L +   E++    ++R A R +LN GG+D+ L  KMI+SG+ L E
Sbjct: 597  LLSYGGVPDNFFMDILKNALEESQGAFSNKRTALRVALNRGGLDELLAAKMILSGIPLDE 656

Query: 860  PYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FCD-------VL 702
             YL+ R+S+++ E+ K L   KLP+ DSY+LMGT DP+ +    +     D       VL
Sbjct: 657  SYLQYRMSIMLNEERKGLLSGKLPITDSYHLMGTVDPSGVLESDEVSIILDNGQISGKVL 716

Query: 701  VYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYRV 522
            VY+HPG+HFGD+H+LTA YV EL+ +VGDAK  I FP  G RS+ADE+A  D DGDM+ V
Sbjct: 717  VYRHPGIHFGDVHILTARYVKELDEFVGDAKYAIFFPCNGPRSLADEMAGGDFDGDMFFV 776

Query: 521  CRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVGV 342
             +N QLL++F+ S PWT+          +P++F DE +LE  LFE  L   F  S  +GV
Sbjct: 777  SKNPQLLDYFKVSEPWTENCTTPEGPSRRPSEFSDE-ELESELFESFLKTRFQPSYAMGV 835

Query: 341  SANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKLKPHI 192
            +A+ W ++MD  LT++          K +  K+ D+  + L A+K+GKKV++P +L+  +
Sbjct: 836  AADNWSAIMDRFLTVEDSNSSEKTLMKENLKKLIDLYYEALDASKTGKKVKVPEELRVAL 895

Query: 191  NPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLPSF 12
             PH+M                 ++N + S S+LG +YD V++++E   +   EV KLP F
Sbjct: 896  FPHYM----------------ERENSFKSTSILGKIYDHVKAYQEEVSRK--EVRKLPFF 937


>ref|XP_012472264.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
            [Gossypium raimondii]
          Length = 1072

 Score =  267 bits (683), Expect = 9e-69
 Identities = 147/360 (40%), Positives = 219/360 (60%), Gaps = 17/360 (4%)
 Frame = -3

Query: 1040 LLSYGGVPDEYFLELLNDCWVETKKFQCDRRAAFRASLNYGGMDDFLLTKMIVSGLLLSE 861
            LLSYGGVPD +F+++L +   E++    ++R A R +LN GG+D+ L  KMI+SG+ L E
Sbjct: 606  LLSYGGVPDNFFMDILKNALEESQGAFSNKRTALRVALNRGGLDELLAAKMILSGIPLDE 665

Query: 860  PYLKERLSVLMREDLKNLKERKLPMNDSYYLMGTADPTRI*NQIKFV*FCD-------VL 702
             YL+ R+S+++ E+ K L   KLP+ DSY+LMGT DP+ +    +     D       VL
Sbjct: 666  SYLQYRMSIMLNEERKGLLSGKLPITDSYHLMGTVDPSGVLESDEVSIILDNGQISGKVL 725

Query: 701  VYKHPGLHFGDIHVLTATYVPELENYVGDAKDGILFPIVGLRSIADEIANSDLDGDMYRV 522
            VY+HPG+HFGD+H+LTA YV EL+ +VGDAK  I FP  G RS+ADE+A  D DGDM+ V
Sbjct: 726  VYRHPGIHFGDVHILTARYVKELDEFVGDAKYAIFFPCNGPRSLADEMAGGDFDGDMFFV 785

Query: 521  CRNTQLLNWFRPSTPWTQTYFAKNVSHLKPTDFKDEDDLEHHLFERCLTAMFSSSNPVGV 342
             +N QLL++F+ S PWT+          +P++F DE +LE  LFE  L   F  S  +GV
Sbjct: 786  SKNPQLLDYFKVSEPWTENCTTPEGPSRRPSEFSDE-ELESELFESFLKTRFQPSYAMGV 844

Query: 341  SANWWLSLMDTRLTLD----------KSDAVKIKDVEGKLLHATKSGKKVQIPLKLKPHI 192
            +A+ W ++MD  LT++          K +  K+ D+  + L A+K+GKKV++P +L+  +
Sbjct: 845  AADNWSAIMDRFLTVEDSNSSEKTLMKENLKKLIDLYYEALDASKTGKKVKVPEELRVAL 904

Query: 191  NPHFMRKKSSGPSGLNSPQSLRKDNYYHSKSVLGLLYDEVESFEESGDQLLIEVDKLPSF 12
             PH+M                 ++N + S S+LG +YD V++++E   +   EV KLP F
Sbjct: 905  FPHYM----------------ERENSFKSTSILGKIYDHVKAYQEEVSRK--EVRKLPFF 946