BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00047253
         (1079 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   359   2e-96
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   359   2e-96
ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub...   357   7e-96
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...   355   3e-95
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...   355   3e-95
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   355   5e-95
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              355   5e-95
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   355   5e-95
ref|XP_010105335.1| DNA-directed RNA polymerase I subunit rpa1 [...   353   2e-94
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   352   3e-94
ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I sub...   352   4e-94
gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus g...   351   5e-94
ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I sub...   351   7e-94
gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas]      351   7e-94
gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gos...   350   9e-94
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   350   1e-93
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   350   1e-93
ref|XP_010666878.1| PREDICTED: DNA-directed RNA polymerase I sub...   348   6e-93
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   348   6e-93
ref|XP_009345035.1| PREDICTED: DNA-directed RNA polymerase I sub...   341   5e-91

>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  359 bits (921), Expect = 2e-96
 Identities = 194/337 (57%), Positives = 233/337 (69%), Gaps = 6/337 (1%)
 Frame = -1

Query: 995  KKKGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICDIQQQGLCTPEKKN 816
            +KK +  P E+ KQKNL +  L P           +NE  +CS+I DIQQQG     KK 
Sbjct: 282  RKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKV 338

Query: 815  SYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLKCNKGLISDLDKVDATNKK 636
             YSMFF++ +LV P+KFR PTKG G   MEHP T LL +VL+ N      L      N +
Sbjct: 339  GYSMFFLETILVPPIKFRAPTKG-GDSVMEHPQTVLLSKVLQAN----ISLGNAYTNNLQ 393

Query: 635  LIEDVTKSWKKLQNSVNVLFDSKPPKGSNKSVK-GICQLLEKKDGMVRQQMMGKRVDYTC 459
              + V + W  LQ SVN+LFDSK      + V  GICQLLEKK+GM RQ+MMGKRV++ C
Sbjct: 394  SSKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFAC 453

Query: 458  RSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNGN-----ATHYVEND 294
            RSVISPDPYLAVNEI IP  FA  LTYPERV PWNV KLR+AI+NG+     ATHYV+  
Sbjct: 454  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKL 513

Query: 293  RTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVFRHLEDGDVVLVNRQ 114
             T RL P+    K+R+  +RKLPSSRG   Q G++ D +FEGK+V RHL+DGDVVLVNRQ
Sbjct: 514  STKRLPPSQ---KARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQ 570

Query: 113  PSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            P+LHKPSIMAH+VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 571  PTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 607


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  359 bits (921), Expect = 2e-96
 Identities = 194/337 (57%), Positives = 233/337 (69%), Gaps = 6/337 (1%)
 Frame = -1

Query: 995  KKKGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICDIQQQGLCTPEKKN 816
            +KK +  P E+ KQKNL +  L P           +NE  +CS+I DIQQQG     KK 
Sbjct: 282  RKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKV 338

Query: 815  SYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLKCNKGLISDLDKVDATNKK 636
             YSMFF++ +LV P+KFR PTKG G   MEHP T LL +VL+ N      L      N +
Sbjct: 339  GYSMFFLETILVPPIKFRAPTKG-GDSVMEHPQTVLLSKVLQAN----ISLGNAYTNNLQ 393

Query: 635  LIEDVTKSWKKLQNSVNVLFDSKPPKGSNKSVK-GICQLLEKKDGMVRQQMMGKRVDYTC 459
              + V + W  LQ SVN+LFDSK      + V  GICQLLEKK+GM RQ+MMGKRV++ C
Sbjct: 394  SSKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFAC 453

Query: 458  RSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNGN-----ATHYVEND 294
            RSVISPDPYLAVNEI IP  FA  LTYPERV PWNV KLR+AI+NG+     ATHYV+  
Sbjct: 454  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKL 513

Query: 293  RTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVFRHLEDGDVVLVNRQ 114
             T RL P+    K+R+  +RKLPSSRG   Q G++ D +FEGK+V RHL+DGDVVLVNRQ
Sbjct: 514  STKRLPPSQ---KARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQ 570

Query: 113  PSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            P+LHKPSIMAH+VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 571  PTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 607


>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
            nucifera]
          Length = 1676

 Score =  357 bits (917), Expect = 7e-96
 Identities = 195/354 (55%), Positives = 238/354 (67%), Gaps = 5/354 (1%)
 Frame = -1

Query: 1049 SPGAMHNGPSSSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRIC 870
            S GA+ +G      E+  KK G   P ++  Q+   +  L P           KNE+R+C
Sbjct: 289  SSGAVSDGTLEFVTET-DKKIGEHIPPDFFSQRKFLSGPLLPPEVKETMRLLWKNEARLC 347

Query: 869  SLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLK 690
            SLICDIQ + L        +SMFF +ALLV P+KFRPP K  G   MEHP T LL +VL+
Sbjct: 348  SLICDIQHERLHVSGMNARHSMFFTEALLVPPIKFRPPAKS-GDSVMEHPQTVLLGKVLQ 406

Query: 689  CNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKSVKGICQLLEKK 510
             N  L  +     +   K+I      W  LQ +VN+L+DSK     + +  GICQLLEKK
Sbjct: 407  SNIAL-GNAHANSSDRSKIIP----RWMDLQQTVNILYDSKTSGQRDNTATGICQLLEKK 461

Query: 509  DGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAI 330
            +G+ RQ+MMGKRV+Y CRSVISPDPYLAVNEI IP  FA  LTYPERV PWNVNKLRDAI
Sbjct: 462  EGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRDAI 521

Query: 329  VNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGK 165
            +NG      ATHYV+   TV+L P+    K RM  +RKLPSSRG  TQ G++ + +FEGK
Sbjct: 522  INGAEHHPGATHYVDKLATVKLPPSR---KMRMSISRKLPSSRGAVTQPGKNLEYEFEGK 578

Query: 164  VVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            VV+RHL+DGD+VLVNRQP+LHKPSIMAH+VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 579  VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 632


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Eucalyptus grandis]
          Length = 1669

 Score =  355 bits (912), Expect = 3e-95
 Identities = 196/366 (53%), Positives = 239/366 (65%), Gaps = 7/366 (1%)
 Frame = -1

Query: 1079 ELDAPSDDEASPGAMHNGPSSSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXX 900
            E +  S   ASP  +       AK+  +K+KG +   EY KQKN  +  L P        
Sbjct: 265  EAETQSSTFASPDGI-----GIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKEIMK 319

Query: 899  XXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHP 720
               +NE+ +CS I DIQQQG        ++SMFF+  +LV P+KFRPP+KG G   MEHP
Sbjct: 320  LLWENEAPLCSFISDIQQQG---SGNSATHSMFFLGTVLVPPIKFRPPSKG-GDSVMEHP 375

Query: 719  HTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKS- 543
            HT LL +VL+ N  L +      AT       +   W  LQ S+N+LFDSK   G  +  
Sbjct: 376  HTVLLAKVLQANISLGNAHQSNRAT-------IISRWMDLQQSINLLFDSKTATGQGRRD 428

Query: 542  -VKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERV 366
               GICQLLEKK+GM RQ MMGKRV+Y CRSVISPDPYLAVNEI IP  FA  LTYPERV
Sbjct: 429  VASGICQLLEKKEGMFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 488

Query: 365  IPWNVNKLRDAIVNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQ 201
             PWN   LR AI+NG      ATHY++   T++L P     K R+  +R+LPSSRG+ TQ
Sbjct: 489  TPWNTVSLRKAIINGADTHPGATHYIDKLSTLKLPPAR---KGRISISRRLPSSRGVVTQ 545

Query: 200  SGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSV 21
            +GRS+D + EGK+V+RHL DGD+VLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS 
Sbjct: 546  AGRSSDNEVEGKIVYRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 605

Query: 20   YNADFD 3
            YNADFD
Sbjct: 606  YNADFD 611


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Eucalyptus grandis]
          Length = 1669

 Score =  355 bits (912), Expect = 3e-95
 Identities = 196/366 (53%), Positives = 239/366 (65%), Gaps = 7/366 (1%)
 Frame = -1

Query: 1079 ELDAPSDDEASPGAMHNGPSSSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXX 900
            E +  S   ASP  +       AK+  +K+KG +   EY KQKN  +  L P        
Sbjct: 265  EAETQSSTFASPDGI-----GIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKEIMK 319

Query: 899  XXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHP 720
               +NE+ +CS I DIQQQG        ++SMFF+  +LV P+KFRPP+KG G   MEHP
Sbjct: 320  LLWENEAPLCSFISDIQQQG---SGNSATHSMFFLGTVLVPPIKFRPPSKG-GDSVMEHP 375

Query: 719  HTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKS- 543
            HT LL +VL+ N  L +      AT       +   W  LQ S+N+LFDSK   G  +  
Sbjct: 376  HTVLLAKVLQANISLGNAHQSNRAT-------IISRWMDLQQSINLLFDSKTATGQGRRD 428

Query: 542  -VKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERV 366
               GICQLLEKK+GM RQ MMGKRV+Y CRSVISPDPYLAVNEI IP  FA  LTYPERV
Sbjct: 429  VASGICQLLEKKEGMFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 488

Query: 365  IPWNVNKLRDAIVNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQ 201
             PWN   LR AI+NG      ATHY++   T++L P     K R+  +R+LPSSRG+ TQ
Sbjct: 489  TPWNTVSLRKAIINGADTHPGATHYIDKLSTLKLPPAR---KGRISISRRLPSSRGVVTQ 545

Query: 200  SGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSV 21
            +GRS+D + EGK+V+RHL DGD+VLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS 
Sbjct: 546  AGRSSDNEVEGKIVYRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 605

Query: 20   YNADFD 3
            YNADFD
Sbjct: 606  YNADFD 611


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score =  355 bits (910), Expect = 5e-95
 Identities = 190/351 (54%), Positives = 240/351 (68%), Gaps = 10/351 (2%)
 Frame = -1

Query: 1025 PSSSAKESIRKK---KGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICD 855
            P+   ++++ K+   KG+  P E+ KQK+  +  L P           +NE+ +CS I D
Sbjct: 281  PTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISD 340

Query: 854  IQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLKCNKGL 675
            I Q+ L     K  YSMFF++ +LV P+KFRPP+KG     MEHP T LL +VL+ N  L
Sbjct: 341  ILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQIS-VMEHPQTVLLGKVLQANIAL 399

Query: 674  ISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNK--SVKGICQLLEKKDGM 501
                    A N +  + +++ W  LQ S+NVLFD K   G  +  +  GICQLLEKK+G+
Sbjct: 400  ----GNAHANNSERSKIISR-WMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGV 454

Query: 500  VRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNG 321
             RQ+MMGKRV++ CRSVISPDPYLAVNEI IP  FA  LTYPE+V PWNV KLRDAI+NG
Sbjct: 455  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIING 514

Query: 320  -----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVF 156
                  ATHYV+   TV+L  N    K R+  +RKLPSSRG+  Q GRS+D +FEGK+V+
Sbjct: 515  PEIHPGATHYVDKLSTVKLAVNK---KMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVY 571

Query: 155  RHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            RHL+DGD+VLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS YNADFD
Sbjct: 572  RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 622


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  355 bits (910), Expect = 5e-95
 Identities = 190/351 (54%), Positives = 240/351 (68%), Gaps = 10/351 (2%)
 Frame = -1

Query: 1025 PSSSAKESIRKK---KGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICD 855
            P+   ++++ K+   KG+  P E+ KQK+  +  L P           +NE+ +CS I D
Sbjct: 259  PTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISD 318

Query: 854  IQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLKCNKGL 675
            I Q+ L     K  YSMFF++ +LV P+KFRPP+KG     MEHP T LL +VL+ N  L
Sbjct: 319  ILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQIS-VMEHPQTVLLGKVLQANIAL 377

Query: 674  ISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNK--SVKGICQLLEKKDGM 501
                    A N +  + +++ W  LQ S+NVLFD K   G  +  +  GICQLLEKK+G+
Sbjct: 378  ----GNAHANNSERSKIISR-WMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGV 432

Query: 500  VRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNG 321
             RQ+MMGKRV++ CRSVISPDPYLAVNEI IP  FA  LTYPE+V PWNV KLRDAI+NG
Sbjct: 433  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIING 492

Query: 320  -----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVF 156
                  ATHYV+   TV+L  N    K R+  +RKLPSSRG+  Q GRS+D +FEGK+V+
Sbjct: 493  PEIHPGATHYVDKLSTVKLAVNK---KMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVY 549

Query: 155  RHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            RHL+DGD+VLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS YNADFD
Sbjct: 550  RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 600


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  355 bits (910), Expect = 5e-95
 Identities = 202/367 (55%), Positives = 246/367 (67%), Gaps = 8/367 (2%)
 Frame = -1

Query: 1079 ELDAPSDDEASPGAMHNG--PSSSAKESIRKKKGS-ATPAEYTKQKNLCNRDLSPXXXXX 909
            +L A SD +A      NG  P +    + R +KGS A P+ + KQK+L +  L P     
Sbjct: 253  DLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKD 312

Query: 908  XXXXXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREM 729
                  +NE  +CS I D+QQQG     KK  +S+FF+ A+LV P+KFR P+KG G   M
Sbjct: 313  IIEKLWENEFELCSFISDMQQQGF---GKKAGHSIFFLGAVLVPPIKFRLPSKG-GDSVM 368

Query: 728  EHPHTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSN 549
            EHP T LL +VL+ N  L +        N K+I  VT+ W  LQ SVNVLFD K   G  
Sbjct: 369  EHPQTVLLSKVLQANIYLANAYVN-QPDNAKII--VTR-WMNLQQSVNVLFDGKNAAGQR 424

Query: 548  KSVKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPER 369
                GICQLLEKK+G+ RQ++MGKRV+Y CRSVISPDPYLAVNEI IP  FA  LTYPER
Sbjct: 425  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 484

Query: 368  VIPWNVNKLRDAIVNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIAT 204
            V PWNV KLRD+I+NG      ATHY++   T+RL PN    K R+  ARKL +SRG   
Sbjct: 485  VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK---KMRISIARKLDTSRGAIV 541

Query: 203  QSGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCS 24
            Q G+ +D +FEGK+V+RHL+DGDVVLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS
Sbjct: 542  QPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 601

Query: 23   VYNADFD 3
             YNADFD
Sbjct: 602  TYNADFD 608


>ref|XP_010105335.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
            gi|587916721|gb|EXC04356.1| DNA-directed RNA polymerase I
            subunit rpa1 [Morus notabilis]
          Length = 1770

 Score =  353 bits (905), Expect = 2e-94
 Identities = 190/360 (52%), Positives = 241/360 (66%), Gaps = 7/360 (1%)
 Frame = -1

Query: 1061 DDEASPGAMHNGPSSSAKESIRKKKGSATPAEYTKQ-KNLCNRDLSPXXXXXXXXXXXKN 885
            +D  SP +  +  + +      + KG   P EY KQ +      + P           +N
Sbjct: 190  NDVTSPDSDADTDTPATSTKSHRSKGGKVPREYLKQTETFSGGPMLPSDVKEMIRLLWEN 249

Query: 884  ESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELL 705
            E  +C+ I DIQ QG+     K  +SMFF++ +LV P+KFRPP+KG G   MEHPHT LL
Sbjct: 250  EIELCTYITDIQHQGI---GNKADHSMFFLETILVPPIKFRPPSKG-GDSVMEHPHTVLL 305

Query: 704  REVLKCNKGL-ISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKSVKGIC 528
             +VL+ N  L  + ++K++ T       + + W  LQ SVNV+FDSK   G      GIC
Sbjct: 306  NKVLQANIELGNAHVNKLEYTK------IVRRWMDLQQSVNVMFDSKTSTGQRNVAPGIC 359

Query: 527  QLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVN 348
            QLLEKK+G+ RQ+MMGKRV++ CRSVISPDPYLAVNEI IP  FA  LTYPERV PWNV 
Sbjct: 360  QLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 419

Query: 347  KLRDAIVNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTD 183
            KLRDAI+NG      ATHYV+   TV+L   P N K+R+  +RKLPSSRG+  Q+G++ D
Sbjct: 420  KLRDAIINGPETHPGATHYVDKLSTVKL---PLNRKARISASRKLPSSRGVVMQNGKTYD 476

Query: 182  QDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
             + EGK+V RHL+DGD+VLVNRQP+LHKPSIMAH+VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 477  YESEGKIVHRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 536


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  352 bits (903), Expect = 3e-94
 Identities = 193/361 (53%), Positives = 242/361 (67%), Gaps = 8/361 (2%)
 Frame = -1

Query: 1061 DDEASPGAMHNGPSSSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNE 882
            +D A PG  H+G          KKK      E+T+QK+  ++ L P           KNE
Sbjct: 258  EDAAEPGDQHSGTKK------HKKKERKEVLEFTRQKSTFSKQLLPSEVKEKLELLWKNE 311

Query: 881  SRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLR 702
            +RICS I D+QQQ     ++K   +MFF++ +LV P+KFRPPTKG G   MEHP T LL 
Sbjct: 312  ARICSFISDLQQQEF--GKRKAGPAMFFLETILVPPIKFRPPTKG-GDSVMEHPQTVLLS 368

Query: 701  EVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKG--SNKSVKGIC 528
            +VL+ N  L       DA   K    + + W  LQ S+N LFDSK  KG    +   GIC
Sbjct: 369  KVLQSNISL------GDAHINKEHSKIVRRWLDLQQSINTLFDSKTAKGPGQREGAPGIC 422

Query: 527  QLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVN 348
            QLLEKK+G+ RQ+MMGKRV+Y CRSVISPDPY+ VNEI IP  FA  LTYPERV PWN+ 
Sbjct: 423  QLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIA 482

Query: 347  KLRDAIVNGN-----ATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTD 183
            KLR+A++NG+     ATHYV+     +L P     K+R+  +RKLPSSRG  TQ+G+ ++
Sbjct: 483  KLRNAVINGSECHPGATHYVDKLSINKLPPAR---KARISISRKLPSSRGAVTQAGKGSE 539

Query: 182  QDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSV-YNADF 6
             +FEGK+V+RHL+DGDVVLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS+ YNADF
Sbjct: 540  CEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADF 599

Query: 5    D 3
            D
Sbjct: 600  D 600


>ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Gossypium
            raimondii] gi|763751831|gb|KJB19219.1| hypothetical
            protein B456_003G089300 [Gossypium raimondii]
          Length = 1674

 Score =  352 bits (902), Expect = 4e-94
 Identities = 193/340 (56%), Positives = 236/340 (69%), Gaps = 6/340 (1%)
 Frame = -1

Query: 1004 SIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICDIQQQGLCTPE 825
            S + +K +  P E+ KQKNL +  L P           +NE  +CSLI  IQQQG     
Sbjct: 278  SAKARKKAKVPLEFLKQKNLFSGPLLPSEVKKVMKLLWENEIELCSLINCIQQQGF---G 334

Query: 824  KKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLKCNKGLISDLDKVDAT 645
            +K  YSMFF++ +LV P+KFR PTKG G   MEHP T LL +VL+ N  L +  +  D  
Sbjct: 335  EKVGYSMFFLETVLVPPIKFRAPTKG-GDSVMEHPQTVLLSKVLQANISLGNAYNN-DLQ 392

Query: 644  NKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKSVK-GICQLLEKKDGMVRQQMMGKRVD 468
            + K+I    + W  LQ S+N+LFDSK      + V  GICQLLE+K+GM RQ+MMGKRV+
Sbjct: 393  SSKVI---VRLWMDLQQSINLLFDSKTAMSQRRDVSPGICQLLERKEGMFRQKMMGKRVN 449

Query: 467  YTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNGN-----ATHYV 303
            + CRSVISPDPYLAVNEI IP  FA  LTYPERV PWNV KLR+AI+NG+     ATHYV
Sbjct: 450  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSELHPGATHYV 509

Query: 302  ENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVFRHLEDGDVVLV 123
            +   T RL PN    K+R+  +RKLPSSR   TQ G++ D +FEGK+V RHL+DGDVVLV
Sbjct: 510  DKLSTQRLPPNR---KARISISRKLPSSRAAITQPGKNFDYEFEGKIVLRHLQDGDVVLV 566

Query: 122  NRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            NRQP+LHKPSIMAH+VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 567  NRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 606


>gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus grandis]
          Length = 1606

 Score =  351 bits (901), Expect = 5e-94
 Identities = 196/366 (53%), Positives = 238/366 (65%), Gaps = 7/366 (1%)
 Frame = -1

Query: 1079 ELDAPSDDEASPGAMHNGPSSSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXX 900
            E +  S   ASP  +       AK+  +K+KG +   EY KQKN  +  L P        
Sbjct: 212  EAETQSSTFASPDGI-----GIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSE------ 260

Query: 899  XXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHP 720
                NE+ +CS I DIQQQG        ++SMFF+  +LV P+KFRPP+KG G   MEHP
Sbjct: 261  ----NEAPLCSFISDIQQQG---SGNSATHSMFFLGTVLVPPIKFRPPSKG-GDSVMEHP 312

Query: 719  HTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKS- 543
            HT LL +VL+ N  L +      AT       +   W  LQ S+N+LFDSK   G  +  
Sbjct: 313  HTVLLAKVLQANISLGNAHQSNRAT-------IISRWMDLQQSINLLFDSKTATGQGRRD 365

Query: 542  -VKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERV 366
               GICQLLEKK+GM RQ MMGKRV+Y CRSVISPDPYLAVNEI IP  FA  LTYPERV
Sbjct: 366  VASGICQLLEKKEGMFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 425

Query: 365  IPWNVNKLRDAIVNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQ 201
             PWN   LR AI+NG      ATHY++   T++L P     K R+  +R+LPSSRG+ TQ
Sbjct: 426  TPWNTVSLRKAIINGADTHPGATHYIDKLSTLKLPPAR---KGRISISRRLPSSRGVVTQ 482

Query: 200  SGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSV 21
            +GRS+D + EGK+V+RHL DGD+VLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS 
Sbjct: 483  AGRSSDNEVEGKIVYRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 542

Query: 20   YNADFD 3
            YNADFD
Sbjct: 543  YNADFD 548


>ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha
            curcas]
          Length = 1741

 Score =  351 bits (900), Expect = 7e-94
 Identities = 197/366 (53%), Positives = 241/366 (65%), Gaps = 7/366 (1%)
 Frame = -1

Query: 1079 ELDAPSDDEASPGAMHNGPSSSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXX 900
            E+D  +D E S     N  +   +    KKKGS    E+ KQ++  ++ L P        
Sbjct: 247  EVDEMTDVEESAEPSGNQDTDVKRH---KKKGSQEAREFYKQRSAFSKQLLPSEVKDALD 303

Query: 899  XXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHP 720
               +NE RICS I D+QQQG    +KK   SMFF++ +LVA +KFRPPTKG G    EHP
Sbjct: 304  LLWENEDRICSFISDLQQQGF--GKKKAGPSMFFLETILVAAIKFRPPTKG-GDSVREHP 360

Query: 719  HTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKS- 543
             T LL +VL+ N  L       DA   K    + + W  LQ S+N+LFDSK  KG  +  
Sbjct: 361  QTVLLSKVLEANIYL------GDAHINKEHSKIVRRWMDLQQSINILFDSKTAKGPGQRD 414

Query: 542  -VKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERV 366
               GICQLLEKK+G+ RQ+MMGKRV+Y CRSVISPDPYL VNEI IP  FA  LTYPERV
Sbjct: 415  VTSGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAVKLTYPERV 474

Query: 365  IPWNVNKLRDAIVNGN-----ATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQ 201
             PWNV KLR+A+ NG+     ATHYV+   T +L   P   K R+  +RKLPSSRG   Q
Sbjct: 475  TPWNVAKLRNAVFNGSESHPGATHYVDKLSTNKL---PVARKMRIAISRKLPSSRGAIMQ 531

Query: 200  SGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSV 21
             G+S+D ++EGK+V+RHL+DGDVVL NRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS 
Sbjct: 532  PGKSSDCEYEGKIVYRHLQDGDVVLCNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 591

Query: 20   YNADFD 3
            YNADFD
Sbjct: 592  YNADFD 597


>gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas]
          Length = 1526

 Score =  351 bits (900), Expect = 7e-94
 Identities = 197/366 (53%), Positives = 241/366 (65%), Gaps = 7/366 (1%)
 Frame = -1

Query: 1079 ELDAPSDDEASPGAMHNGPSSSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXX 900
            E+D  +D E S     N  +   +    KKKGS    E+ KQ++  ++ L P        
Sbjct: 32   EVDEMTDVEESAEPSGNQDTDVKRH---KKKGSQEAREFYKQRSAFSKQLLPSEVKDALD 88

Query: 899  XXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHP 720
               +NE RICS I D+QQQG    +KK   SMFF++ +LVA +KFRPPTKG G    EHP
Sbjct: 89   LLWENEDRICSFISDLQQQGF--GKKKAGPSMFFLETILVAAIKFRPPTKG-GDSVREHP 145

Query: 719  HTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKS- 543
             T LL +VL+ N  L       DA   K    + + W  LQ S+N+LFDSK  KG  +  
Sbjct: 146  QTVLLSKVLEANIYL------GDAHINKEHSKIVRRWMDLQQSINILFDSKTAKGPGQRD 199

Query: 542  -VKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERV 366
               GICQLLEKK+G+ RQ+MMGKRV+Y CRSVISPDPYL VNEI IP  FA  LTYPERV
Sbjct: 200  VTSGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAVKLTYPERV 259

Query: 365  IPWNVNKLRDAIVNGN-----ATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQ 201
             PWNV KLR+A+ NG+     ATHYV+   T +L   P   K R+  +RKLPSSRG   Q
Sbjct: 260  TPWNVAKLRNAVFNGSESHPGATHYVDKLSTNKL---PVARKMRIAISRKLPSSRGAIMQ 316

Query: 200  SGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSV 21
             G+S+D ++EGK+V+RHL+DGDVVL NRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS 
Sbjct: 317  PGKSSDCEYEGKIVYRHLQDGDVVLCNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 376

Query: 20   YNADFD 3
            YNADFD
Sbjct: 377  YNADFD 382


>gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gossypium arboreum]
          Length = 789

 Score =  350 bits (899), Expect = 9e-94
 Identities = 192/340 (56%), Positives = 236/340 (69%), Gaps = 6/340 (1%)
 Frame = -1

Query: 1004 SIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICDIQQQGLCTPE 825
            S + +K +  P E+ KQKNL +  L P           +NE  +CSLI  IQQQG     
Sbjct: 278  STKARKKAKVPLEFLKQKNLFSGPLLPSEVKKVMKLLWENEIELCSLINCIQQQGF---G 334

Query: 824  KKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLKCNKGLISDLDKVDAT 645
            +K  +SMFF++ +LV P+KFR PTKG G   MEHP T LL +VL+ N  L +  +  D  
Sbjct: 335  EKVGFSMFFLETVLVPPIKFRAPTKG-GDSVMEHPQTVLLSKVLQANISLGNAYNN-DLQ 392

Query: 644  NKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNKSVK-GICQLLEKKDGMVRQQMMGKRVD 468
            + K+I    + W  LQ S+N+LFDSK      + V  GICQLLE+K+GM RQ+MMGKRV+
Sbjct: 393  SSKVI---VRLWMDLQQSINLLFDSKTAMSQRRDVSPGICQLLERKEGMFRQKMMGKRVN 449

Query: 467  YTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNGN-----ATHYV 303
            + CRSVISPDPYLAVNEI IP  FA  LTYPERV PWNV K+R+AI+NG+     ATHYV
Sbjct: 450  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKVREAIINGSEIHPGATHYV 509

Query: 302  ENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVFRHLEDGDVVLV 123
            +   T RL PN    K+R+  +RKLPSSRG  TQ G++ D  FEGK+V RHL+DGDVVLV
Sbjct: 510  DKLSTQRLPPNR---KARISISRKLPSSRGAITQPGKNFDYQFEGKIVLRHLQDGDVVLV 566

Query: 122  NRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            NRQP+LHKPSIMAH+VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 567  NRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 606


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
           gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
           isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  350 bits (898), Expect = 1e-93
 Identities = 190/325 (58%), Positives = 226/325 (69%), Gaps = 6/325 (1%)
 Frame = -1

Query: 959 KQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLV 780
           KQKNL +  L P           +NE  +CS+I DIQQQG     KK  YSMFF++ +LV
Sbjct: 2   KQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILV 58

Query: 779 APVKFRPPTKGDGGREMEHPHTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKL 600
            P+KFR PTKG G   MEHP T LL +VL+ N      L      N +  + V + W  L
Sbjct: 59  PPIKFRAPTKG-GDSVMEHPQTVLLSKVLQAN----ISLGNAYTNNLQSSKAVVRLWMDL 113

Query: 599 QNSVNVLFDSKPPKGSNKSVK-GICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAV 423
           Q SVN+LFDSK      + V  GICQLLEKK+GM RQ+MMGKRV++ CRSVISPDPYLAV
Sbjct: 114 QQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 173

Query: 422 NEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNGN-----ATHYVENDRTVRLKPNPENV 258
           NEI IP  FA  LTYPERV PWNV KLR+AI+NG+     ATHYV+   T RL P+    
Sbjct: 174 NEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQ--- 230

Query: 257 KSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHI 78
           K+R+  +RKLPSSRG   Q G++ D +FEGK+V RHL+DGDVVLVNRQP+LHKPSIMAH+
Sbjct: 231 KARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHV 290

Query: 77  VRVLEGEKTLRMHYANCSVYNADFD 3
           VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 291 VRVLKGEKTIRMHYANCSTYNADFD 315


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
           gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
           isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  350 bits (898), Expect = 1e-93
 Identities = 190/325 (58%), Positives = 226/325 (69%), Gaps = 6/325 (1%)
 Frame = -1

Query: 959 KQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLV 780
           KQKNL +  L P           +NE  +CS+I DIQQQG     KK  YSMFF++ +LV
Sbjct: 2   KQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILV 58

Query: 779 APVKFRPPTKGDGGREMEHPHTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKL 600
            P+KFR PTKG G   MEHP T LL +VL+ N      L      N +  + V + W  L
Sbjct: 59  PPIKFRAPTKG-GDSVMEHPQTVLLSKVLQAN----ISLGNAYTNNLQSSKAVVRLWMDL 113

Query: 599 QNSVNVLFDSKPPKGSNKSVK-GICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAV 423
           Q SVN+LFDSK      + V  GICQLLEKK+GM RQ+MMGKRV++ CRSVISPDPYLAV
Sbjct: 114 QQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 173

Query: 422 NEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNGN-----ATHYVENDRTVRLKPNPENV 258
           NEI IP  FA  LTYPERV PWNV KLR+AI+NG+     ATHYV+   T RL P+    
Sbjct: 174 NEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQ--- 230

Query: 257 KSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHI 78
           K+R+  +RKLPSSRG   Q G++ D +FEGK+V RHL+DGDVVLVNRQP+LHKPSIMAH+
Sbjct: 231 KARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHV 290

Query: 77  VRVLEGEKTLRMHYANCSVYNADFD 3
           VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 291 VRVLKGEKTIRMHYANCSTYNADFD 315


>ref|XP_010666878.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Beta vulgaris
            subsp. vulgaris] gi|870842325|gb|KMS95772.1| hypothetical
            protein BVRB_005160 [Beta vulgaris subsp. vulgaris]
          Length = 1702

 Score =  348 bits (892), Expect = 6e-93
 Identities = 192/365 (52%), Positives = 239/365 (65%), Gaps = 9/365 (2%)
 Frame = -1

Query: 1070 APSDDEASPGAMHNGPS--SSAKESIRKKKGSATPAEYTKQKNLCNRDLSPXXXXXXXXX 897
            A  DD+ S   + N     S    S R+KK     +++ K K    R L P         
Sbjct: 231  AEGDDDKSMSEVENAEDQDSGRVASNRRKKKDDLQSDFLKWKTA--RSLLPTEVRGILER 288

Query: 896  XXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREMEHPH 717
              +NE+R+CS ICDIQQ      +KK +++MFF+ +LLV P KFRPP+KG G   MEHP 
Sbjct: 289  LWENEARLCSFICDIQQHQQNISQKKAAFTMFFLKSLLVPPTKFRPPSKG-GDAVMEHPQ 347

Query: 716  TELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSNK--S 543
            T LL ++L+CN  L +  ++    N      +   W  LQ SVNVLFDSK   G  +  +
Sbjct: 348  TVLLGKILECNISLANAYEQHAERNY-----ILSRWMNLQQSVNVLFDSKGGAGLRQRDT 402

Query: 542  VKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPERVI 363
              GICQLLEKK+G+ RQ+MMGKRV++ CRSVISPDPYLAVNEI IP  FA  LTYPERV 
Sbjct: 403  ASGICQLLEKKEGLFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPVFALKLTYPERVT 462

Query: 362  PWNVNKLRDAIVNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIATQS 198
            PWNV  LRDAIVNG      ATHYV+   TV+L P     +SR+ Y+RKLPSSRG+ TQS
Sbjct: 463  PWNVTSLRDAIVNGPEIHPGATHYVDKVATVKLPPTR---RSRISYSRKLPSSRGVTTQS 519

Query: 197  GRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCSVY 18
            G++   D+EGK+V+RHL +GD+VLVNRQP+LHKPSI+A  VRVL GEKT+R HYANC  +
Sbjct: 520  GKTFTNDYEGKIVYRHLRNGDIVLVNRQPTLHKPSIIALKVRVLPGEKTIRFHYANCDSF 579

Query: 17   NADFD 3
            NADFD
Sbjct: 580  NADFD 584


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  348 bits (892), Expect = 6e-93
 Identities = 197/367 (53%), Positives = 240/367 (65%), Gaps = 8/367 (2%)
 Frame = -1

Query: 1079 ELDAPSDDEASPGAMHNG--PSSSAKESIRKKKGS-ATPAEYTKQKNLCNRDLSPXXXXX 909
            +L   SD +A      NG  P +    + R +KGS A P+ + KQK+L +  L P     
Sbjct: 253  DLGTSSDVDAPETHSFNGAFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKD 312

Query: 908  XXXXXXKNESRICSLICDIQQQGLCTPEKKNSYSMFFIDALLVAPVKFRPPTKGDGGREM 729
                  +NE  +CS I D+QQQG     KK  +S+FF+  +LV P+KFR P+KG G   M
Sbjct: 313  IIEKLWENEFELCSFISDMQQQGF---GKKAGHSIFFLGVVLVPPIKFRLPSKG-GDSVM 368

Query: 728  EHPHTELLREVLKCNKGLISDLDKVDATNKKLIEDVTKSWKKLQNSVNVLFDSKPPKGSN 549
            EHP T LL +VL+ N  L +        N K+I      W  LQ SVNVLFD K   G  
Sbjct: 369  EHPQTVLLSKVLQANIYLANAYVN-QPDNAKVI---VARWMNLQQSVNVLFDGKNAAGQR 424

Query: 548  KSVKGICQLLEKKDGMVRQQMMGKRVDYTCRSVISPDPYLAVNEIRIPRSFAKGLTYPER 369
                GICQLLEKK+G+ RQ++MGKRV+Y CRSVISPDPYLAVNEI IP  FA  LTYPER
Sbjct: 425  DVASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 484

Query: 368  VIPWNVNKLRDAIVNG-----NATHYVENDRTVRLKPNPENVKSRMPYARKLPSSRGIAT 204
            V PWNV KLRD+I+NG      ATHY++   T+RL PN    K R+   RKL +SRG   
Sbjct: 485  VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK---KMRISIGRKLDTSRGAIV 541

Query: 203  QSGRSTDQDFEGKVVFRHLEDGDVVLVNRQPSLHKPSIMAHIVRVLEGEKTLRMHYANCS 24
            Q G+ +D +FEGK+V+RHL+DGDVVLVNRQP+LHKPSIMAH+VRVL+GEKTLRMHYANCS
Sbjct: 542  QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 601

Query: 23   VYNADFD 3
             YNADFD
Sbjct: 602  TYNADFD 608


>ref|XP_009345035.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Pyrus x bretschneideri]
          Length = 1684

 Score =  341 bits (875), Expect = 5e-91
 Identities = 181/336 (53%), Positives = 228/336 (67%), Gaps = 7/336 (2%)
 Frame = -1

Query: 989  KGSATPAEYTKQKNLCNRDLSPXXXXXXXXXXXKNESRICSLICDIQQQGLCTPEKKNSY 810
            +GS  P+E+  Q    + DL P            NE+  CS I DIQ QG+    +K  +
Sbjct: 252  EGSKVPSEFLNQTTSLSGDLLPKQVQDIIKLLWDNEAEFCSFIGDIQCQGI---GRKAGH 308

Query: 809  SMFFIDALLVAPVKFRPPTKGDGGREMEHPHTELLREVLKCNKGLISDLDKVDATNKKLI 630
            SMFF++ +LV P+KFRPP+KG G   MEHP T LL +V++ N  L   +      +K + 
Sbjct: 309  SMFFLETVLVPPIKFRPPSKG-GDSVMEHPQTVLLSKVVQANNSLQESVVTKSDPSKTI- 366

Query: 629  EDVTKSWKKLQNSVNVLFDSKPP--KGSNKSVKGICQLLEKKDGMVRQQMMGKRVDYTCR 456
                + W+ LQ  +NV+++SK    KG   +  GICQLLEKK+G+ RQ+MMGKRV+Y CR
Sbjct: 367  ----RQWRDLQEYINVMYNSKTATGKGQKDADPGICQLLEKKEGLFRQKMMGKRVNYACR 422

Query: 455  SVISPDPYLAVNEIRIPRSFAKGLTYPERVIPWNVNKLRDAIVNG-----NATHYVENDR 291
            SVISPDPYLAVNEI IP  FA  LTYPERV PWNV+KLR+AIVNG      AT YV+   
Sbjct: 423  SVISPDPYLAVNEIGIPPYFATRLTYPERVTPWNVDKLRNAIVNGPEIHPGATQYVDKSS 482

Query: 290  TVRLKPNPENVKSRMPYARKLPSSRGIATQSGRSTDQDFEGKVVFRHLEDGDVVLVNRQP 111
               L+   +N + R+  ARKLPSS+G+ATQ G+ +D  +E KVVFRHL DGD+VLVNRQP
Sbjct: 483  VKMLR---QNRRERISTARKLPSSKGLATQHGKGSDNSYENKVVFRHLRDGDIVLVNRQP 539

Query: 110  SLHKPSIMAHIVRVLEGEKTLRMHYANCSVYNADFD 3
            +LHKPSIMAH+VRVL+GEKT+RMHYANCS YNADFD
Sbjct: 540  TLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 575