BLASTX nr result

ID: Papaver29_contig00042122 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00042122
         (499 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006373668.1| hypothetical protein POPTR_0016s02630g [Popu...    54   4e-14
ref|XP_002263209.2| PREDICTED: putative pentatricopeptide repeat...    60   5e-14
pdb|4OZS|A Chain A, Rna Binding Protein                                53   5e-14
emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]    58   9e-14
ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat...    58   9e-14
ref|XP_010531717.1| PREDICTED: pentatricopeptide repeat-containi...    54   3e-13
ref|XP_010531721.1| PREDICTED: pentatricopeptide repeat-containi...    54   3e-13
ref|XP_012441343.1| PREDICTED: pentatricopeptide repeat-containi...    53   4e-13
gb|KJB61701.1| hypothetical protein B456_009G375400 [Gossypium r...    53   4e-13
ref|XP_012441344.1| PREDICTED: pentatricopeptide repeat-containi...    53   4e-13
gb|KJB61702.1| hypothetical protein B456_009G375400 [Gossypium r...    53   4e-13
ref|XP_012441345.1| PREDICTED: pentatricopeptide repeat-containi...    53   4e-13
ref|XP_012487249.1| PREDICTED: pentatricopeptide repeat-containi...    52   7e-13
ref|XP_010531711.1| PREDICTED: pentatricopeptide repeat-containi...    55   7e-13
ref|XP_010529542.1| PREDICTED: pentatricopeptide repeat-containi...    51   9e-13
ref|XP_006371715.1| hypothetical protein POPTR_0018s00690g [Popu...    54   3e-12
ref|XP_010539050.1| PREDICTED: pentatricopeptide repeat-containi...    54   3e-12
ref|XP_010539051.1| PREDICTED: pentatricopeptide repeat-containi...    54   3e-12
ref|XP_011048493.1| PREDICTED: putative pentatricopeptide repeat...    52   4e-12
ref|XP_011041406.1| PREDICTED: putative pentatricopeptide repeat...    52   4e-12

>ref|XP_006373668.1| hypothetical protein POPTR_0016s02630g [Populus trichocarpa]
           gi|550320670|gb|ERP51465.1| hypothetical protein
           POPTR_0016s02630g [Populus trichocarpa]
          Length = 585

 Score = 54.3 bits (129), Expect(2) = 4e-14
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           ++GKI  AV+ FD+M+ERG   N  T  TII  L ++GE   A+ LL+ M    C+  +V
Sbjct: 127 IKGKIARAVEFFDEMVERGYPPNLHTYTTIIKGLCKIGETPVAVGLLKKMDNAGCQPNVV 186

Query: 349 SY 354
           +Y
Sbjct: 187 TY 188



 Score = 50.1 bits (118), Expect(2) = 4e-14
 Identities = 26/50 (52%), Positives = 34/50 (68%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           L+D+L K  LV EAL +FSEM     + PNV+ YNSL+ GLC +D+  EA
Sbjct: 191 LIDSLCKDRLVKEALDIFSEM-KSKGIQPNVVTYNSLMHGLCNSDQQEEA 239



 Score = 48.5 bits (114), Expect(2) = 8e-11
 Identities = 21/50 (42%), Positives = 37/50 (74%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           L+D L K+G +D+AL+LF EM  ++ + P++++YN LI  +CK+ +L +A
Sbjct: 401 LLDGLSKQGCLDQALELFQEM-QNNYLNPDLVIYNILIDAMCKSGKLEDA 449



 Score = 44.7 bits (104), Expect(2) = 8e-11
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +1

Query: 163 CTVQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEAT 342
           C    +I  A ++FD+M  RG+  NT + NT+I+ L +VG +  A +L ++M    C   
Sbjct: 335 CCKAQRIDEAKQIFDEMSFRGLIPNTASYNTLISGLFQVGRILEAKELFKDMHAQGCSPD 394

Query: 343 IVSY 354
           +V+Y
Sbjct: 395 LVTY 398


>ref|XP_002263209.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial [Vitis vinifera]
          Length = 592

 Score = 60.5 bits (145), Expect(2) = 5e-14
 Identities = 28/62 (45%), Positives = 41/62 (66%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           V+GKI  A+ LFDKM+  G Q N +T  T+I  L +VG    A++LLR+M + NCE  ++
Sbjct: 156 VEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVI 215

Query: 349 SY 354
           +Y
Sbjct: 216 TY 217



 Score = 43.5 bits (101), Expect(2) = 5e-14
 Identities = 23/43 (53%), Positives = 29/43 (67%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCK 478
           ++D L K   V+EAL +FSEMI    + PNV  YNS+I GLCK
Sbjct: 220 IIDCLFKDRQVNEALNIFSEMIA-KGISPNVSTYNSIIHGLCK 261


>pdb|4OZS|A Chain A, Rna Binding Protein
          Length = 175

 Score = 52.8 bits (125), Expect(2) = 5e-14
 Identities = 23/60 (38%), Positives = 41/60 (68%)
 Frame = +1

Query: 175 GKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           G+++ A++LF +M E+GV+ + +T NT+I  L++ G LE ALQL + M +   +  +V+Y
Sbjct: 16  GRLEEALQLFQEMKEKGVKPDVVTYNTLIDGLAKAGRLEEALQLFQEMKEKGVKPDVVTY 75



 Score = 52.8 bits (125), Expect(2) = 5e-14
 Identities = 23/60 (38%), Positives = 41/60 (68%)
 Frame = +1

Query: 175 GKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           G+++ A++LF +M E+GV+ + +T NT+I  L++ G LE ALQL + M +   +  +V+Y
Sbjct: 51  GRLEEALQLFQEMKEKGVKPDVVTYNTLIDGLAKAGRLEEALQLFQEMKEKGVKPDVVTY 110



 Score = 51.2 bits (121), Expect(2) = 5e-14
 Identities = 27/50 (54%), Positives = 34/50 (68%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           L+D L K G ++EALQLF EM  +  V P+V+ YN+LI GL K  RL EA
Sbjct: 78  LIDGLAKAGRLEEALQLFQEM-KEKGVKPDVVTYNTLIDGLAKAGRLEEA 126



 Score = 51.2 bits (121), Expect(2) = 5e-14
 Identities = 27/50 (54%), Positives = 34/50 (68%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           L+D L K G ++EALQLF EM  +  V P+V+ YN+LI GL K  RL EA
Sbjct: 113 LIDGLAKAGRLEEALQLFQEM-KEKGVKPDVVTYNTLIDGLAKAGRLEEA 161



 Score = 51.2 bits (121), Expect(2) = 9e-09
 Identities = 27/50 (54%), Positives = 34/50 (68%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           L+D L K G ++EALQLF EM  +  V P+V+ YN+LI GL K  RL EA
Sbjct: 43  LIDGLAKAGRLEEALQLFQEM-KEKGVKPDVVTYNTLIDGLAKAGRLEEA 91



 Score = 35.0 bits (79), Expect(2) = 9e-09
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 235 NTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           + +T NT+I  L++ G LE ALQL + M +   +  +V+Y
Sbjct: 1   DVVTYNTLIDGLAKAGRLEEALQLFQEMKEKGVKPDVVTY 40



 Score = 52.8 bits (125), Expect(2) = 2e-07
 Identities = 23/60 (38%), Positives = 41/60 (68%)
 Frame = +1

Query: 175 GKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           G+++ A++LF +M E+GV+ + +T NT+I  L++ G LE ALQL + M +   +  +V+Y
Sbjct: 86  GRLEEALQLFQEMKEKGVKPDVVTYNTLIDGLAKAGRLEEALQLFQEMKEKGVKPDVVTY 145



 Score = 29.3 bits (64), Expect(2) = 2e-07
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEM 412
           L+D L K G ++EALQLF EM
Sbjct: 148 LIDGLAKAGRLEEALQLFQEM 168


>emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 58.2 bits (139), Expect(2) = 9e-14
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           V+GKI  A+ LFDKMI  G Q N +T  T+I  L +VG    A++LLR+M + NC+  +V
Sbjct: 152 VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVV 211

Query: 349 SY 354
            +
Sbjct: 212 VF 213



 Score = 45.1 bits (105), Expect(2) = 9e-14
 Identities = 23/43 (53%), Positives = 29/43 (67%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCK 478
           L+D+L K   V EA  +FSEMI    + PN++ YNSLI GLCK
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMIT-KGISPNIVTYNSLIHGLCK 257



 Score = 41.6 bits (96), Expect(2) = 7e-07
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
 Frame = +1

Query: 139 IASLLG*NCTVQG--KIQS---AVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQ 303
           +A+++  N  + G  KIQS   A+ LF++M  + +  NT+T NT+I  L  VG L++A+ 
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 406

Query: 304 LLRNMAKLNCEATIVSY 354
           L   M        +V+Y
Sbjct: 407 LFHEMVARGQIPDLVTY 423



 Score = 38.1 bits (87), Expect(2) = 7e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D + + G +++A  LFS +     + PNV  YN +I GLCK   L+EA
Sbjct: 461 ILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAEA 509


>ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial [Vitis vinifera]
          Length = 588

 Score = 58.2 bits (139), Expect(2) = 9e-14
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           V+GKI  A+ LFDKMI  G Q N +T  T+I  L +VG    A++LLR+M + NC+  +V
Sbjct: 152 VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVV 211

Query: 349 SY 354
            +
Sbjct: 212 VF 213



 Score = 45.1 bits (105), Expect(2) = 9e-14
 Identities = 23/43 (53%), Positives = 29/43 (67%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCK 478
           L+D+L K   V EA  +FSEMI    + PN++ YNSLI GLCK
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMIT-KGISPNIVTYNSLIHGLCK 257



 Score = 41.6 bits (96), Expect(2) = 7e-07
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
 Frame = +1

Query: 139 IASLLG*NCTVQG--KIQS---AVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQ 303
           +A+++  N  + G  KIQS   A+ LF++M  + +  NT+T NT+I  L  VG L++A+ 
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 406

Query: 304 LLRNMAKLNCEATIVSY 354
           L   M        +V+Y
Sbjct: 407 LFHEMVARGQIPDLVTY 423



 Score = 38.1 bits (87), Expect(2) = 7e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D + + G +++A  LFS +     + PNV  YN +I GLCK   L+EA
Sbjct: 461 ILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAEA 509


>ref|XP_010531717.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X1 [Tarenaya hassleriana]
           gi|729315907|ref|XP_010531718.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X1 [Tarenaya hassleriana]
           gi|729315910|ref|XP_010531719.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X1 [Tarenaya hassleriana]
           gi|729315913|ref|XP_010531720.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X1 [Tarenaya hassleriana]
          Length = 536

 Score = 54.3 bits (129), Expect(2) = 3e-13
 Identities = 23/63 (36%), Positives = 39/63 (61%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           + GKI +A+ L D+M+E G + N +T +T+I  L   G +  AL L   M K++C+  +V
Sbjct: 174 IHGKISAALSLVDQMVEEGYKPNVVTFSTLINGLCLEGRVSEALSLFDQMLKMDCQPNVV 233

Query: 349 SYG 357
           ++G
Sbjct: 234 TFG 236



 Score = 47.0 bits (110), Expect(2) = 3e-13
 Identities = 22/49 (44%), Positives = 34/49 (69%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSE 496
           ++D L K G VD AL LF +M D   ++P+V+ +NS+I+G CK +R+ E
Sbjct: 273 IIDYLCKAGHVDGALNLFGKM-DSCGIVPDVVTFNSMINGYCKANRVDE 320



 Score = 50.4 bits (119), Expect(2) = 9e-08
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           +M  L K G VDEAL LF++++D   V PNVI+YN +ISGLC  D L EA
Sbjct: 413 MMHGLCKVGRVDEALILFNKLLD-RGVKPNVIMYNIMISGLCGKDSLYEA 461



 Score = 32.3 bits (72), Expect(2) = 9e-08
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 178 KIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           ++   + LF +M  RG+  + +T N +I    R+G L+ A ++   M        +V+Y
Sbjct: 317 RVDEGINLFYEMSRRGLVADVVTYNILIQGFYRIGNLDVAQKVFMEMQYKGHRPDLVTY 375


>ref|XP_010531721.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X2 [Tarenaya hassleriana]
          Length = 531

 Score = 54.3 bits (129), Expect(2) = 3e-13
 Identities = 23/63 (36%), Positives = 39/63 (61%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           + GKI +A+ L D+M+E G + N +T +T+I  L   G +  AL L   M K++C+  +V
Sbjct: 169 IHGKISAALSLVDQMVEEGYKPNVVTFSTLINGLCLEGRVSEALSLFDQMLKMDCQPNVV 228

Query: 349 SYG 357
           ++G
Sbjct: 229 TFG 231



 Score = 47.0 bits (110), Expect(2) = 3e-13
 Identities = 22/49 (44%), Positives = 34/49 (69%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSE 496
           ++D L K G VD AL LF +M D   ++P+V+ +NS+I+G CK +R+ E
Sbjct: 268 IIDYLCKAGHVDGALNLFGKM-DSCGIVPDVVTFNSMINGYCKANRVDE 315



 Score = 50.4 bits (119), Expect(2) = 9e-08
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           +M  L K G VDEAL LF++++D   V PNVI+YN +ISGLC  D L EA
Sbjct: 408 MMHGLCKVGRVDEALILFNKLLD-RGVKPNVIMYNIMISGLCGKDSLYEA 456



 Score = 32.3 bits (72), Expect(2) = 9e-08
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 178 KIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           ++   + LF +M  RG+  + +T N +I    R+G L+ A ++   M        +V+Y
Sbjct: 312 RVDEGINLFYEMSRRGLVADVVTYNILIQGFYRIGNLDVAQKVFMEMQYKGHRPDLVTY 370


>ref|XP_012441343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63330-like isoform X1 [Gossypium raimondii]
          Length = 621

 Score = 53.1 bits (126), Expect(2) = 4e-13
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           +Q KI  A+ +FD M ERG QL+ I  NTI+  L ++G  + A + LR M     E  IV
Sbjct: 159 IQSKISEAISIFDGMTERGYQLDLIVYNTILKGLCKIGNTDRAARFLRLMEGTGFEPDIV 218

Query: 349 SYG----CFRKK 372
           +Y     C  KK
Sbjct: 219 AYNTILDCLCKK 230



 Score = 47.8 bits (112), Expect(2) = 4e-13
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K+GL+ EAL LFSEM     + P++I YN LI G+C + R  EA
Sbjct: 223 ILDCLCKKGLLKEALNLFSEM-KVKGIRPDIITYNCLIHGMCNSGRQEEA 271


>gb|KJB61701.1| hypothetical protein B456_009G375400 [Gossypium raimondii]
          Length = 621

 Score = 53.1 bits (126), Expect(2) = 4e-13
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           +Q KI  A+ +FD M ERG QL+ I  NTI+  L ++G  + A + LR M     E  IV
Sbjct: 159 IQSKISEAISIFDGMTERGYQLDLIVYNTILKGLCKIGNTDRAARFLRLMEGTGFEPDIV 218

Query: 349 SYG----CFRKK 372
           +Y     C  KK
Sbjct: 219 AYNTILDCLCKK 230



 Score = 47.8 bits (112), Expect(2) = 4e-13
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K+GL+ EAL LFSEM     + P++I YN LI G+C + R  EA
Sbjct: 223 ILDCLCKKGLLKEALNLFSEM-KVKGIRPDIITYNCLIHGMCNSGRQEEA 271


>ref|XP_012441344.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63330-like isoform X2 [Gossypium raimondii]
          Length = 591

 Score = 53.1 bits (126), Expect(2) = 4e-13
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           +Q KI  A+ +FD M ERG QL+ I  NTI+  L ++G  + A + LR M     E  IV
Sbjct: 129 IQSKISEAISIFDGMTERGYQLDLIVYNTILKGLCKIGNTDRAARFLRLMEGTGFEPDIV 188

Query: 349 SYG----CFRKK 372
           +Y     C  KK
Sbjct: 189 AYNTILDCLCKK 200



 Score = 47.8 bits (112), Expect(2) = 4e-13
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K+GL+ EAL LFSEM     + P++I YN LI G+C + R  EA
Sbjct: 193 ILDCLCKKGLLKEALNLFSEM-KVKGIRPDIITYNCLIHGMCNSGRQEEA 241


>gb|KJB61702.1| hypothetical protein B456_009G375400 [Gossypium raimondii]
          Length = 591

 Score = 53.1 bits (126), Expect(2) = 4e-13
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           +Q KI  A+ +FD M ERG QL+ I  NTI+  L ++G  + A + LR M     E  IV
Sbjct: 129 IQSKISEAISIFDGMTERGYQLDLIVYNTILKGLCKIGNTDRAARFLRLMEGTGFEPDIV 188

Query: 349 SYG----CFRKK 372
           +Y     C  KK
Sbjct: 189 AYNTILDCLCKK 200



 Score = 47.8 bits (112), Expect(2) = 4e-13
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K+GL+ EAL LFSEM     + P++I YN LI G+C + R  EA
Sbjct: 193 ILDCLCKKGLLKEALNLFSEM-KVKGIRPDIITYNCLIHGMCNSGRQEEA 241


>ref|XP_012441345.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like isoform X3 [Gossypium raimondii]
          Length = 568

 Score = 53.1 bits (126), Expect(2) = 4e-13
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           +Q KI  A+ +FD M ERG QL+ I  NTI+  L ++G  + A + LR M     E  IV
Sbjct: 159 IQSKISEAISIFDGMTERGYQLDLIVYNTILKGLCKIGNTDRAARFLRLMEGTGFEPDIV 218

Query: 349 SYG----CFRKK 372
           +Y     C  KK
Sbjct: 219 AYNTILDCLCKK 230



 Score = 47.8 bits (112), Expect(2) = 4e-13
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K+GL+ EAL LFSEM     + P++I YN LI G+C + R  EA
Sbjct: 223 ILDCLCKKGLLKEALNLFSEM-KVKGIRPDIITYNCLIHGMCNSGRQEEA 271


>ref|XP_012487249.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Gossypium raimondii]
           gi|763771076|gb|KJB38291.1| hypothetical protein
           B456_006G247100 [Gossypium raimondii]
          Length = 638

 Score = 52.4 bits (124), Expect(2) = 7e-13
 Identities = 33/76 (43%), Positives = 42/76 (55%)
 Frame = +1

Query: 130 YSNIASLLG*NCTVQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLL 309
           Y+ +  LL   C V+GK   AV++F KM ERG Q +  T   +I  L  +GE   AL L 
Sbjct: 143 YATLGRLLKGLC-VEGKGFEAVQVFAKMRERGFQGDVFTYGILIYGLCSIGESCPALNLF 201

Query: 310 RNMAKLNCEATIVSYG 357
           R MAK NCE  +  YG
Sbjct: 202 RKMAKRNCEGYLRIYG 217



 Score = 47.8 bits (112), Expect(2) = 7e-13
 Identities = 25/47 (53%), Positives = 32/47 (68%)
 Frame = +2

Query: 359 ALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           +L K  LVDE L LF EM+    + P+V+VY+SL+SGLC   RL EA
Sbjct: 222 SLYKDKLVDEGLNLFFEMVS-KGITPDVVVYSSLVSGLCSLGRLKEA 267



 Score = 39.3 bits (90), Expect(2) = 1e-05
 Identities = 22/63 (34%), Positives = 38/63 (60%)
 Frame = +1

Query: 130 YSNIASLLG*NCTVQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLL 309
           YS++ S L   C++ G+++ AVK FD+MI RG+  + +  N +I   SR G  + A+++ 
Sbjct: 251 YSSLVSGL---CSL-GRLKEAVKFFDEMIGRGIAADLVMYNLLIHGFSREGMWKEAIRIF 306

Query: 310 RNM 318
             M
Sbjct: 307 DRM 309



 Score = 36.6 bits (83), Expect(2) = 1e-05
 Identities = 19/50 (38%), Positives = 31/50 (62%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           L+  L K+G+V +A ++F+ M     + P +  YNSL+ GLC+  +L EA
Sbjct: 324 LISCLCKKGMVVKAHEMFAFM-RQKEMKPTLFTYNSLMDGLCRAGQLDEA 372


>ref|XP_010531711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X1 [Tarenaya hassleriana]
          Length = 537

 Score = 55.5 bits (132), Expect(2) = 7e-13
 Identities = 24/63 (38%), Positives = 40/63 (63%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           + GKI +A+ L D+M+E G + N +T +T+I  L   G +  AL LL  M K++C+  +V
Sbjct: 175 IHGKISAALSLVDQMVEEGYKPNVVTFSTLINGLCLEGRVSEALSLLDQMQKMDCQPDVV 234

Query: 349 SYG 357
           ++G
Sbjct: 235 TFG 237



 Score = 44.7 bits (104), Expect(2) = 7e-13
 Identities = 20/49 (40%), Positives = 34/49 (69%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSE 496
           ++D L K G V+ AL LF +M     ++PNV+ +NS+I+G CK++R+ +
Sbjct: 274 IIDYLCKTGHVEGALNLFGKM-SSCGIVPNVVTFNSMINGYCKSNRVDK 321



 Score = 48.9 bits (115), Expect(2) = 6e-06
 Identities = 27/49 (55%), Positives = 34/49 (69%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSE 496
           +M  L K G VDEAL LF++++D   V PNVI+YN +ISGLC  D L E
Sbjct: 414 MMHGLCKVGRVDEALILFNKLLD-RGVKPNVIMYNIMISGLCGKDSLYE 461



 Score = 27.7 bits (60), Expect(2) = 6e-06
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 178 KIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           ++   + LF +M  R +  + IT N +I    RVG +  A ++   M        +V+Y
Sbjct: 318 RVDKGINLFYEMSRRELVADAITYNILIQGFYRVGNVGAAQKVFMEMQYKGHRPDLVTY 376


>ref|XP_010529542.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Tarenaya hassleriana]
           gi|729309280|ref|XP_010529543.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Tarenaya hassleriana]
          Length = 560

 Score = 50.8 bits (120), Expect(2) = 9e-13
 Identities = 20/62 (32%), Positives = 40/62 (64%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           +QGK+ +A+ L D++++ G + N +T NT++    R G +  A+ L+  M K++C+  +V
Sbjct: 92  IQGKLSTALILVDQIVKDGYKPNVVTYNTLVNRFCREGRVSEAVSLVDRMLKMDCKPNVV 151

Query: 349 SY 354
           +Y
Sbjct: 152 TY 153



 Score = 48.9 bits (115), Expect(2) = 9e-13
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSE 496
           ++D L K G +D+AL LF +M D+  V+PNV+ Y+ LI+GLC  DR ++
Sbjct: 191 IIDGLCKGGHIDDALNLFQKM-DNKGVVPNVVTYSCLINGLCVFDRWND 238



 Score = 43.5 bits (101), Expect(2) = 3e-08
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +1

Query: 160 NCTVQG-----KIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAK 324
           +C + G     K+   +KLF +M  RG+  NT T NT+I    RVG  + A +L+  M +
Sbjct: 329 SCLINGYCKSNKVDEGMKLFHEMSRRGMVSNTYTYNTLIQGFFRVGNAKVAQKLVLEMQR 388

Query: 325 LNCEATIVSY 354
            + +  +V+Y
Sbjct: 389 QSVDPDVVTY 398



 Score = 40.8 bits (94), Expect(2) = 3e-08
 Identities = 20/50 (40%), Positives = 35/50 (70%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K G +DEAL+L+ ++ + S +  ++ V+N +I+GL K DR+ EA
Sbjct: 401 MLDGLCKNGKLDEALELYCKL-ETSGIDIDIFVHNVMINGLWKADRVDEA 449


>ref|XP_006371715.1| hypothetical protein POPTR_0018s00690g [Populus trichocarpa]
           gi|550317736|gb|ERP49512.1| hypothetical protein
           POPTR_0018s00690g [Populus trichocarpa]
          Length = 555

 Score = 52.4 bits (124), Expect(2) = 3e-12
 Identities = 23/62 (37%), Positives = 39/62 (62%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           ++GK   AV+ FD+M+ERG + N  T  T+I  L ++G+   A++LL+ M    C+  +V
Sbjct: 128 IEGKFARAVEFFDEMVERGYRPNLHTYTTVIKGLCKIGKTPVAVELLKKMDNEGCQPDVV 187

Query: 349 SY 354
           +Y
Sbjct: 188 TY 189



 Score = 45.8 bits (107), Expect(2) = 3e-12
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D+L K  LV EA  +FS M     + PNV++YNSL+ GLC +D   EA
Sbjct: 192 IIDSLCKDRLVKEAFDIFSAM-KGKGIQPNVVIYNSLMHGLCNSDHQEEA 240



 Score = 54.3 bits (129), Expect(2) = 8e-12
 Identities = 25/50 (50%), Positives = 37/50 (74%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           L+D L K+G +DEAL+LF EM  +S + PN+++YN LI  +CK+ +L EA
Sbjct: 402 LLDGLSKQGYIDEALELFREM-QNSYLKPNLVIYNILIDAMCKSGKLEEA 450



 Score = 42.4 bits (98), Expect(2) = 8e-12
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +1

Query: 163 CTVQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEAT 342
           C    +I  A +LFD++  RG+  NT + NT+I  L +VG +  A  L ++M    C   
Sbjct: 336 CCKAQRIDEAKQLFDEISFRGLIPNTASYNTLINGLCQVGRILEAKYLFKDMHAQGCSPD 395

Query: 343 IVSY 354
           +++Y
Sbjct: 396 LITY 399


>ref|XP_010539050.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X1 [Tarenaya hassleriana]
          Length = 537

 Score = 54.3 bits (129), Expect(2) = 3e-12
 Identities = 23/63 (36%), Positives = 39/63 (61%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           + GKI +A+ L D+M+E G + N +T +T+I  L   G +  AL L   M K++C+  +V
Sbjct: 175 IHGKISAALSLVDQMVEEGYKPNVVTFSTLINGLCLEGRVSEALSLFDQMLKMDCQPNVV 234

Query: 349 SYG 357
           ++G
Sbjct: 235 TFG 237



 Score = 43.5 bits (101), Expect(2) = 3e-12
 Identities = 21/49 (42%), Positives = 33/49 (67%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSE 496
           ++D L K G VD AL LF +M     ++P+V+ +NS+I+G CK +R+ E
Sbjct: 274 IIDYLCKVGHVDGALNLFGKM-GSCGIVPDVVTFNSIINGYCKANRVDE 321



 Score = 50.4 bits (119), Expect(2) = 2e-07
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           +M  L K G VDEAL LF++++D   V PNVI+YN +ISGLC  D L EA
Sbjct: 414 MMHGLCKVGRVDEALILFNKLLD-RGVKPNVIMYNIMISGLCGKDSLYEA 462



 Score = 31.6 bits (70), Expect(2) = 2e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 178 KIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           ++   + LF +M  RG+  + +T N +I    RVG L  A ++   M        +V+Y
Sbjct: 318 RVDEGINLFYEMSRRGLVADVVTYNILIQGFYRVGNLGAAQKVFMEMQYKGHSPDLVTY 376


>ref|XP_010539051.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like isoform X2 [Tarenaya hassleriana]
          Length = 532

 Score = 54.3 bits (129), Expect(2) = 3e-12
 Identities = 23/63 (36%), Positives = 39/63 (61%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           + GKI +A+ L D+M+E G + N +T +T+I  L   G +  AL L   M K++C+  +V
Sbjct: 170 IHGKISAALSLVDQMVEEGYKPNVVTFSTLINGLCLEGRVSEALSLFDQMLKMDCQPNVV 229

Query: 349 SYG 357
           ++G
Sbjct: 230 TFG 232



 Score = 43.5 bits (101), Expect(2) = 3e-12
 Identities = 21/49 (42%), Positives = 33/49 (67%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSE 496
           ++D L K G VD AL LF +M     ++P+V+ +NS+I+G CK +R+ E
Sbjct: 269 IIDYLCKVGHVDGALNLFGKM-GSCGIVPDVVTFNSIINGYCKANRVDE 316



 Score = 50.4 bits (119), Expect(2) = 2e-07
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           +M  L K G VDEAL LF++++D   V PNVI+YN +ISGLC  D L EA
Sbjct: 409 MMHGLCKVGRVDEALILFNKLLD-RGVKPNVIMYNIMISGLCGKDSLYEA 457



 Score = 31.6 bits (70), Expect(2) = 2e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 178 KIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIVSY 354
           ++   + LF +M  RG+  + +T N +I    RVG L  A ++   M        +V+Y
Sbjct: 313 RVDEGINLFYEMSRRGLVADVVTYNILIQGFYRVGNLGAAQKVFMEMQYKGHSPDLVTY 371


>ref|XP_011048493.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial [Populus euphratica]
           gi|743909996|ref|XP_011048494.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein At1g12700,
           mitochondrial [Populus euphratica]
          Length = 621

 Score = 52.4 bits (124), Expect(2) = 4e-12
 Identities = 25/62 (40%), Positives = 38/62 (61%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           V+G+I  AV+ F+ M+ RG + N  T NTII  L ++G+   A  LL+ M +  CE  +V
Sbjct: 178 VEGRIARAVEFFNDMVARGYEPNLHTYNTIINGLCKIGDTSVAAGLLKKMDEAGCEPDVV 237

Query: 349 SY 354
           +Y
Sbjct: 238 TY 239



 Score = 45.1 bits (105), Expect(2) = 4e-12
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K  LV+EAL +FS+M    S+ P+VI Y SL+ GLC +D+  EA
Sbjct: 242 IIDNLCKDRLVNEALDIFSQM-KGKSIEPDVITYTSLMHGLCNSDQWKEA 290


>ref|XP_011041406.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial [Populus euphratica]
          Length = 433

 Score = 52.4 bits (124), Expect(2) = 4e-12
 Identities = 25/62 (40%), Positives = 38/62 (61%)
 Frame = +1

Query: 169 VQGKIQSAVKLFDKMIERGVQLNTITCNTIITALSRVGELENALQLLRNMAKLNCEATIV 348
           V+G+I  AV+ F+ M+ RG + N  T NTII  L ++G+   A  LL+ M +  CE  +V
Sbjct: 56  VEGRIARAVEFFNDMVARGYEPNLHTYNTIINGLCKIGDTSVAAGLLKKMDEAGCEPDVV 115

Query: 349 SY 354
           +Y
Sbjct: 116 TY 117



 Score = 45.1 bits (105), Expect(2) = 4e-12
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +2

Query: 350 LMDALGKRGLVDEALQLFSEMIDDSSVIPNVIVYNSLISGLCKNDRLSEA 499
           ++D L K  LV+EAL +FS+M    S+ P+VI Y SL+ GLC +D+  EA
Sbjct: 120 IIDNLCKDRLVNEALDIFSQM-KGKSIEPDVITYTSLMHGLCNSDQWKEA 168


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