BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00036299
         (575 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   136   8e-30
ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV su...   135   2e-29
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su...   135   2e-29
ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV su...   134   4e-29
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su...   134   4e-29
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   133   5e-29
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   133   5e-29
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   133   5e-29
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   133   5e-29
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   132   2e-28
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   132   2e-28
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   129   8e-28
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   129   1e-27
ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV su...   129   1e-27
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   129   1e-27
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   129   1e-27
ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV su...   128   2e-27
ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV su...   128   2e-27
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   126   7e-27
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   125   2e-26

>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
           cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
           polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  136 bits (342), Expect = 8e-30
 Identities = 81/191 (42%), Positives = 97/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPLIC P RGDFDGDCL  YVPQSI +RVEL E      
Sbjct: 432 HQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARVELIELVSLNR 491

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   +++D V L   Q+QQLEMF  + SPFPAIVKAP   
Sbjct: 492 QLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPFPAIVKAPL-- 549

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                                              + S+WTGKQLLSML P +F++DF  
Sbjct: 550 ----------------------------------LRSSVWTGKQLLSMLFPLEFDYDFTP 575

Query: 35  NGVCISEGEIL 3
           N V I  GE++
Sbjct: 576 NDVVIRNGELI 586


>ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Nicotiana tomentosiformis]
          Length = 1211

 Score =  135 bits (339), Expect = 2e-29
 Identities = 79/191 (41%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSV+ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E      
Sbjct: 164 HQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNR 223

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +  V+L + Q+QQL+MF  H    PAIV+AP+  
Sbjct: 224 QLIDGQSGQNLLSLSHDSLTAAHLVLEGGVFLDRFQVQQLQMFCPHQVGMPAIVRAPSR- 282

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                                                S WTGKQL S+ +P D + DFP 
Sbjct: 283 -----------------------------------NRSYWTGKQLFSLFLPSDLDCDFPS 307

Query: 35  NGVCISEGEIL 3
           NGVCIS+GEI+
Sbjct: 308 NGVCISDGEIV 318


>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Nicotiana tomentosiformis]
          Length = 1447

 Score =  135 bits (339), Expect = 2e-29
 Identities = 79/191 (41%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSV+ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E      
Sbjct: 400 HQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNR 459

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +  V+L + Q+QQL+MF  H    PAIV+AP+  
Sbjct: 460 QLIDGQSGQNLLSLSHDSLTAAHLVLEGGVFLDRFQVQQLQMFCPHQVGMPAIVRAPSR- 518

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                                                S WTGKQL S+ +P D + DFP 
Sbjct: 519 -----------------------------------NRSYWTGKQLFSLFLPSDLDCDFPS 543

Query: 35  NGVCISEGEIL 3
           NGVCIS+GEI+
Sbjct: 544 NGVCISDGEIV 554


>ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Nicotiana sylvestris]
          Length = 1254

 Score =  134 bits (336), Expect = 4e-29
 Identities = 78/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSV+ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E      
Sbjct: 207 HQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNR 266

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + ++ V+L + Q+QQL+MF  H    PAIV+AP+  
Sbjct: 267 QLIDGQSGQNLLSLSHDSLTAAHLILEEGVFLDRFQMQQLQMFCPHQVGMPAIVRAPSR- 325

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                                                S WTGKQL  + +P D + DFP 
Sbjct: 326 -----------------------------------NRSYWTGKQLFGLFLPSDLDCDFPS 350

Query: 35  NGVCISEGEIL 3
           NGVCIS+GEI+
Sbjct: 351 NGVCISDGEIV 361


>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1
           isoform X1 [Nicotiana sylvestris]
           gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
           RNA polymerase IV subunit 1 isoform X1 [Nicotiana
           sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
           DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1
           isoform X1 [Nicotiana sylvestris]
          Length = 1447

 Score =  134 bits (336), Expect = 4e-29
 Identities = 78/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSV+ILP  SV S+NPL+C P RGDFDGDCL  YVPQSIDSRVEL E      
Sbjct: 400 HQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNR 459

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + ++ V+L + Q+QQL+MF  H    PAIV+AP+  
Sbjct: 460 QLIDGQSGQNLLSLSHDSLTAAHLILEEGVFLDRFQMQQLQMFCPHQVGMPAIVRAPSR- 518

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                                                S WTGKQL  + +P D + DFP 
Sbjct: 519 -----------------------------------NRSYWTGKQLFGLFLPSDLDCDFPS 543

Query: 35  NGVCISEGEIL 3
           NGVCIS+GEI+
Sbjct: 544 NGVCISDGEIV 554


>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
           [Vitis vinifera]
          Length = 1354

 Score =  133 bits (335), Expect = 5e-29
 Identities = 77/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPL C P RGDFDGDCL  Y+PQS+DSRVEL E      
Sbjct: 312 HQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNR 371

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V L   Q+QQLEMF  +    PAI+KAP  +
Sbjct: 372 QLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLD 431

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
            +                                    +WTGKQL SML+P  FN+ FP+
Sbjct: 432 TQ------------------------------------VWTGKQLFSMLLPPGFNYVFPL 455

Query: 35  NGVCISEGEIL 3
           NGV IS+GE++
Sbjct: 456 NGVRISDGELI 466


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Vitis vinifera]
          Length = 1458

 Score =  133 bits (335), Expect = 5e-29
 Identities = 77/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPL C P RGDFDGDCL  Y+PQS+DSRVEL E      
Sbjct: 418 HQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNR 477

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V L   Q+QQLEMF  +    PAI+KAP  +
Sbjct: 478 QLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLD 537

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
            +                                    +WTGKQL SML+P  FN+ FP+
Sbjct: 538 TQ------------------------------------VWTGKQLFSMLLPPGFNYVFPL 561

Query: 35  NGVCISEGEIL 3
           NGV IS+GE++
Sbjct: 562 NGVRISDGELI 572


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Vitis vinifera]
          Length = 1460

 Score =  133 bits (335), Expect = 5e-29
 Identities = 77/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPL C P RGDFDGDCL  Y+PQS+DSRVEL E      
Sbjct: 418 HQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNR 477

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V L   Q+QQLEMF  +    PAI+KAP  +
Sbjct: 478 QLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLD 537

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
            +                                    +WTGKQL SML+P  FN+ FP+
Sbjct: 538 TQ------------------------------------VWTGKQLFSMLLPPGFNYVFPL 561

Query: 35  NGVCISEGEIL 3
           NGV IS+GE++
Sbjct: 562 NGVRISDGELI 572


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  133 bits (335), Expect = 5e-29
 Identities = 77/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPL C P RGDFDGDCL  Y+PQS+DSRVEL E      
Sbjct: 421 HQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNR 480

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V L   Q+QQLEMF  +    PAI+KAP  +
Sbjct: 481 QLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLD 540

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
            +                                    +WTGKQL SML+P  FN+ FP+
Sbjct: 541 TQ------------------------------------VWTGKQLFSMLLPPGFNYVFPL 564

Query: 35  NGVCISEGEIL 3
           NGV IS+GE++
Sbjct: 565 NGVRISDGELI 575


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Solanum tuberosum]
          Length = 1233

 Score =  132 bits (331), Expect = 2e-28
 Identities = 79/191 (41%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSV+ILP  SV S+NPL+C P RGDFDGDCL  Y+PQSIDSR+EL E      
Sbjct: 191 HQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQ 250

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +  V+L + Q+QQL+MF                 
Sbjct: 251 QLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFC---------------- 294

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                         QL M A        IVKAP   +  WTGKQL S+L+P D  + FP 
Sbjct: 295 ------------PRQLGMTA--------IVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPS 334

Query: 35  NGVCISEGEIL 3
           NGVCISEGEI+
Sbjct: 335 NGVCISEGEIV 345


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
           [Solanum tuberosum]
          Length = 1446

 Score =  132 bits (331), Expect = 2e-28
 Identities = 79/191 (41%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSV+ILP  SV S+NPL+C P RGDFDGDCL  Y+PQSIDSR+EL E      
Sbjct: 404 HQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQ 463

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +  V+L + Q+QQL+MF                 
Sbjct: 464 QLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFC---------------- 507

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                         QL M A        IVKAP   +  WTGKQL S+L+P D  + FP 
Sbjct: 508 ------------PRQLGMTA--------IVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPS 547

Query: 35  NGVCISEGEIL 3
           NGVCISEGEI+
Sbjct: 548 NGVCISEGEIV 558


>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
           subunit 1 [Prunus mume]
          Length = 1452

 Score =  129 bits (325), Expect = 8e-28
 Identities = 77/191 (40%), Positives = 95/191 (49%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVKILP  SV S+NPL C P RGDFDGDCL  Y+PQS D+RVELRE      
Sbjct: 412 HQHSLIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVALDK 471

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D   L   ++QQLEMF   + P PA++KAP+  
Sbjct: 472 QLINGQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFCWDVLPSPAVIKAPS-- 529

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                             L SH                 WTGKQ+ SML+P DF++DF  
Sbjct: 530 ------------------LNSH----------------AWTGKQVFSMLLPSDFDYDFAS 555

Query: 35  NGVCISEGEIL 3
           +GV I  GE+L
Sbjct: 556 DGVYIKNGELL 566


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
           [Gossypium raimondii]
          Length = 1300

 Score =  129 bits (324), Expect = 1e-27
 Identities = 78/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E      
Sbjct: 432 HQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDR 491

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   +++D V L   Q+QQLEMF  + SP PAIVKAP   
Sbjct: 492 QLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAP--- 548

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                  L   P+                          WTGKQL SML P +F++ F  
Sbjct: 549 -------LLSNPV--------------------------WTGKQLFSMLFPPEFDYVFAP 575

Query: 35  NGVCISEGEIL 3
           +GV I  G+++
Sbjct: 576 SGVVIHNGDLI 586


>ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Gossypium raimondii]
          Length = 1340

 Score =  129 bits (324), Expect = 1e-27
 Identities = 78/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E      
Sbjct: 291 HQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDR 350

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   +++D V L   Q+QQLEMF  + SP PAIVKAP   
Sbjct: 351 QLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAP--- 407

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                  L   P+                          WTGKQL SML P +F++ F  
Sbjct: 408 -------LLSNPV--------------------------WTGKQLFSMLFPPEFDYVFAP 434

Query: 35  NGVCISEGEIL 3
           +GV I  G+++
Sbjct: 435 SGVVIHNGDLI 445


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  129 bits (324), Expect = 1e-27
 Identities = 78/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E      
Sbjct: 429 HQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDR 488

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   +++D V L   Q+QQLEMF  + SP PAIVKAP   
Sbjct: 489 QLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAP--- 545

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                  L   P+                          WTGKQL SML P +F++ F  
Sbjct: 546 -------LLSNPV--------------------------WTGKQLFSMLFPPEFDYVFAP 572

Query: 35  NGVCISEGEIL 3
           +GV I  G+++
Sbjct: 573 SGVVIHNGDLI 583


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
           [Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
           isoform X1 [Gossypium raimondii]
           gi|763758424|gb|KJB25755.1| hypothetical protein
           B456_004G207300 [Gossypium raimondii]
           gi|763758426|gb|KJB25757.1| hypothetical protein
           B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  129 bits (324), Expect = 1e-27
 Identities = 78/191 (40%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV S+NPLIC P RGDFDGDCL  YVPQSI++RVEL E      
Sbjct: 432 HQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDR 491

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   +++D V L   Q+QQLEMF  + SP PAIVKAP   
Sbjct: 492 QLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAP--- 548

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                  L   P+                          WTGKQL SML P +F++ F  
Sbjct: 549 -------LLSNPV--------------------------WTGKQLFSMLFPPEFDYVFAP 575

Query: 35  NGVCISEGEIL 3
           +GV I  G+++
Sbjct: 576 SGVVIHNGDLI 586


>ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Pyrus x
           bretschneideri] gi|694406181|ref|XP_009377913.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1
           [Pyrus x bretschneideri]
          Length = 1466

 Score =  128 bits (322), Expect = 2e-27
 Identities = 74/191 (38%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IAL VKILP   V S+NPL C P RGDFDGDCL  YVPQS+D++VELRE      
Sbjct: 422 HQHSLIALFVKILPAAPVVSINPLCCSPFRGDFDGDCLHGYVPQSVDAKVELRELVALDK 481

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V L ++Q+QQL+ F  +  P PAI+KAP+ +
Sbjct: 482 QLINGQSGTNLLSLSQDSLTAAHLILEDGVLLNRSQMQQLQRFCCNELPSPAIIKAPSLD 541

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                     GP                           WTGKQ+ SML+P  F++DF  
Sbjct: 542 ----------GP--------------------------AWTGKQVFSMLLPLGFDYDFAP 565

Query: 35  NGVCISEGEIL 3
           +GVC+  GE+L
Sbjct: 566 DGVCVRNGELL 576


>ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Malus
           domestica]
          Length = 1287

 Score =  128 bits (322), Expect = 2e-27
 Identities = 74/191 (38%), Positives = 95/191 (49%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IAL VKILP   V S+NPL C P RGDFDGDCL  YVPQS+D++VELRE      
Sbjct: 401 HQHSLIALFVKILPAAPVVSINPLCCSPFRGDFDGDCLHGYVPQSVDAKVELRELVALDK 460

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V L ++Q+QQL+ F  +  P PAI+KAP+  
Sbjct: 461 QLINGQSGTNLLSLSQDSLTAAHLILEDGVLLNRSQMQQLQRFCCNELPSPAIIKAPS-- 518

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                                     PA           WTGKQ+ SML+P  F++DF  
Sbjct: 519 -----------------------LNGPA-----------WTGKQVFSMLLPLGFDYDFAP 544

Query: 35  NGVCISEGEIL 3
           +GVC+  GE+L
Sbjct: 545 DGVCVRNGELL 555


>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  126 bits (317), Expect = 7e-27
 Identities = 74/191 (38%), Positives = 94/191 (49%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVKILP  SV S+NPL C PLRGDFDGDCL  YVPQS+++RVEL+E      
Sbjct: 96  HQHSLIALSVKILPINSVVSINPLTCSPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNK 155

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V+L K ++QQL+MFS  +   PAI+++ + E
Sbjct: 156 QLVNGQSGQNLLSLSQDSLTAAHLISQDGVFLNKPEMQQLQMFSAWIPMLPAIIQSTSRE 215

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                                                S WTGKQL S L+P DF F    
Sbjct: 216 T------------------------------------SFWTGKQLFSQLLPLDFEFSNAS 239

Query: 35  NGVCISEGEIL 3
           NGV I  GE++
Sbjct: 240 NGVGIKHGELV 250


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score =  125 bits (313), Expect = 2e-26
 Identities = 75/191 (39%), Positives = 96/191 (50%)
 Frame = -1

Query: 575 HQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDSRVELREXXXXXX 396
           HQHS+IALSVK+LP  SV ++NPLIC P RGDFDGDCL  YVPQS+D+RVELRE      
Sbjct: 424 HQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDK 483

Query: 395 XXXXXXXXXXXXXXXXXXXXXXXXLRKDDVYLKKAQIQQLEMFSLHLSPFPAIVKAPTPE 216
                                   + +D V L   Q+QQL+MF                 
Sbjct: 484 QLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMF----------------- 526

Query: 215 VREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQLLSMLMPQDFNFDFPV 36
                 C HQ               SPA+ KAP+     WTGKQL+SML+P+ F+ + P 
Sbjct: 527 ------CPHQ-------------LFSPAVRKAPSLNGCAWTGKQLISMLLPRGFDHECPS 567

Query: 35  NGVCISEGEIL 3
           + V I +GE++
Sbjct: 568 SDVYIRDGELI 578