BLASTX nr result
ID: Papaver29_contig00032806
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver29_contig00032806
(1088 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_009780918.1| PREDICTED: cleavage and polyadenylation spec... 285 6e-74
ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobr... 284 1e-73
ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation spec... 282 3e-73
ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation spec... 282 3e-73
ref|XP_009619090.1| PREDICTED: cleavage and polyadenylation spec... 281 5e-73
ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Mal... 281 7e-73
ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation spec... 280 1e-72
gb|KHG22501.1| Cleavage and polyadenylation specificity factor s... 278 4e-72
ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation spec... 277 1e-71
ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation spec... 276 2e-71
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 276 2e-71
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec... 275 5e-71
ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobr... 273 1e-70
ref|XP_007044908.1| RNA-binding family protein isoform 5, partia... 273 1e-70
ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobr... 273 1e-70
ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobr... 273 1e-70
ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation spec... 272 3e-70
ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation spec... 271 9e-70
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 270 1e-69
ref|XP_002312652.1| RNA recognition motif-containing family prot... 270 2e-69
>ref|XP_009780918.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
[Nicotiana sylvestris]
Length = 648
Score = 285 bits (728), Expect = 6e-74
Identities = 161/361 (44%), Positives = 196/361 (54%), Gaps = 4/361 (1%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPG---- 914
QVGN G+QGS K GADP MP K + L + G+ R QM N++
Sbjct: 151 QVGNSGYQGSIQTTQKIGADPINMPEKNANEATPLVNSGVGGSRVVTQMPTNQLSSSGNV 210
Query: 913 NVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGK 734
N+N PI+S+ PIRP+++NG TM+FVG+LHWWTTDAE+E VL+QYG VKEIKFFDERASGK
Sbjct: 211 NINSPIISETPIRPSLENGNTMLFVGELHWWTTDAEIESVLTQYGNVKEIKFFDERASGK 270
Query: 733 SKGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQ 554
SKGYCQVEF++ +AAA+CKEGM+G +FNGRACVVAFA+PQ++KQMG++Y+NK Q Q Q Q
Sbjct: 271 SKGYCQVEFFDPAAAASCKEGMNGHIFNGRACVVAFATPQTIKQMGSSYMNKTQNQVQTQ 330
Query: 553 PQGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXX 374
PQGRR ++ GRNF +
Sbjct: 331 PQGRRPMNE-----GVGRGGANYAPGDAGRNFGR-GSWGRGGPGMPNRGPGGGPVRGRGG 384
Query: 373 XXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXX 194
AKNMM + Q PQ MMG GFDP
Sbjct: 385 MGAKNMM---GNPGAGTGPGGAFGQGLAGPAFGGPPAGLMHPQGMMGPGFDPGFMGRGAG 441
Query: 193 XXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGM 14
PQ+P +NPMGLPGVAPHVNPAFFGR M+ HPGM
Sbjct: 442 YGGFSGPAFPGMIPQFPAVNPMGLPGVAPHVNPAFFGRGMSANGMGMMGNAGMDGPHPGM 501
Query: 13 W 11
W
Sbjct: 502 W 502
>ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695488|ref|XP_007044903.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708837|gb|EOY00734.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708838|gb|EOY00735.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 653
Score = 284 bits (726), Expect = 1e-73
Identities = 161/357 (45%), Positives = 196/357 (54%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVNR 902
QV NMGFQG ++A K G DP+ +P K + + G + A + N++ NVN
Sbjct: 155 QVKNMGFQGLSSASHKVGIDPSGVPQKIANVPAQSLNSGTGGPQGAPHVPPNQMGLNVNH 214
Query: 901 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 722
P++S+N +RP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSKGY
Sbjct: 215 PMISENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGY 274
Query: 721 CQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 542
CQVEFY+ ++AAACKEGM G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+QAQPQGR
Sbjct: 275 CQVEFYDPASAAACKEGMDGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGR 334
Query: 541 RVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 362
R P+D GRN+ + K
Sbjct: 335 R-PND----GLGRGGNMNYQSGDAGRNYGR-GGWGRGGQGVVNRSGVGGPMRGRGGVGVK 388
Query: 361 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 182
NM+ Y Q PQ MMGAGFDPT
Sbjct: 389 NMVGSSAGVGNGANGGAAYGQGPAGPPFGGPAGGMMHPQGMMGAGFDPTYMGRGGSYGGF 448
Query: 181 XXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMW 11
P +P +N +GL GVAPHVNPAFFGR M+ H GMW
Sbjct: 449 PGPGFPGMLPSFPAVNTLGLAGVAPHVNPAFFGRGMAPNGMGMMGGPGMDGPHVGMW 505
>ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
gi|731372808|ref|XP_010650883.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185 isoform
X2 [Vitis vinifera] gi|731372811|ref|XP_010650886.1|
PREDICTED: cleavage and polyadenylation specificity
factor subunit CG7185 isoform X2 [Vitis vinifera]
Length = 650
Score = 282 bits (722), Expect = 3e-73
Identities = 169/360 (46%), Positives = 201/360 (55%), Gaps = 3/360 (0%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVN- 905
QV N+GFQGS P K GA+P+ + K + + + + G R QM N++ NVN
Sbjct: 154 QVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNV 213
Query: 904 -RPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 728
RP+V++N IRPAVDNG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSK
Sbjct: 214 NRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSK 273
Query: 727 GYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 548
GYCQVEFY++SAAAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK QAQ+Q Q
Sbjct: 274 GYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK--TQAQSQSQ 331
Query: 547 GRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNK-VXXXXXXXXXXXXXXXXXXXXXXXXXX 371
GRR +D G GRN+ +
Sbjct: 332 GRRPMND----GVGRGGGMNMQGGDAGRNYGRGGWGRGGQGILNRGPGGGGPMRGRGGAV 387
Query: 370 XAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXX 191
AKNM+ Y Q PQ MMG+GFDPT
Sbjct: 388 GAKNMV---GNTAGVGASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMGRGGAY 444
Query: 190 XXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMW 11
P +P +N MGL GVAPHVNPAFFGR M+ HH GMW
Sbjct: 445 GGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDGHHAGMW 504
>ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
isoform X1 [Vitis vinifera]
Length = 656
Score = 282 bits (722), Expect = 3e-73
Identities = 169/360 (46%), Positives = 201/360 (55%), Gaps = 3/360 (0%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVN- 905
QV N+GFQGS P K GA+P+ + K + + + + G R QM N++ NVN
Sbjct: 160 QVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNV 219
Query: 904 -RPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 728
RP+V++N IRPAVDNG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSK
Sbjct: 220 NRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSK 279
Query: 727 GYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 548
GYCQVEFY++SAAAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK QAQ+Q Q
Sbjct: 280 GYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK--TQAQSQSQ 337
Query: 547 GRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNK-VXXXXXXXXXXXXXXXXXXXXXXXXXX 371
GRR +D G GRN+ +
Sbjct: 338 GRRPMND----GVGRGGGMNMQGGDAGRNYGRGGWGRGGQGILNRGPGGGGPMRGRGGAV 393
Query: 370 XAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXX 191
AKNM+ Y Q PQ MMG+GFDPT
Sbjct: 394 GAKNMV---GNTAGVGASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMGRGGAY 450
Query: 190 XXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMW 11
P +P +N MGL GVAPHVNPAFFGR M+ HH GMW
Sbjct: 451 GGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDGHHAGMW 510
>ref|XP_009619090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
[Nicotiana tomentosiformis]
Length = 648
Score = 281 bits (720), Expect = 5e-73
Identities = 159/361 (44%), Positives = 196/361 (54%), Gaps = 4/361 (1%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPG---- 914
Q+GN G+QGS K GADP MP K + L + G+ R QM N++
Sbjct: 151 QMGNSGYQGSIPTTQKIGADPINMPEKNANEATPLVNSGVGGSRVVPQMPTNQLSSSGNV 210
Query: 913 NVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGK 734
N+N PI+S+ PIRP+++NG TM+FVG+LHWWTTD+E+E VL+QYG VKEIKFFDERASGK
Sbjct: 211 NMNSPIISETPIRPSLENGNTMLFVGELHWWTTDSEIESVLTQYGNVKEIKFFDERASGK 270
Query: 733 SKGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQ 554
SKGYCQVEF++ +AAA+CKEGM+G +FNGRACVVAFA+PQ++KQMG++Y+NK Q Q Q Q
Sbjct: 271 SKGYCQVEFFDPAAAASCKEGMNGHIFNGRACVVAFATPQTIKQMGSSYMNKTQNQVQTQ 330
Query: 553 PQGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXX 374
PQGRR ++ GRNF +
Sbjct: 331 PQGRRPMNE-----GVGRGGANYTPGDAGRNFGR-GSWGRGGPGMPNRGPGGGPVRGRGG 384
Query: 373 XXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXX 194
AKNMM + Q PQ MMG GFDP
Sbjct: 385 MGAKNMM---GNPGTGTGHGGAFGQGLAGPAFGGPPAGLMHPQGMMGPGFDPGFMGRGAG 441
Query: 193 XXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGM 14
PQ+P +NPMGLPGVAPHVNPAFFGR M+ HPGM
Sbjct: 442 YGGFSGPAFPGMIPQFPAVNPMGLPGVAPHVNPAFFGRGMSANGMGMMGNAGMDGPHPGM 501
Query: 13 W 11
W
Sbjct: 502 W 502
>ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Malus domestica]
gi|657994880|ref|XP_008389756.1| PREDICTED: RNA-binding
protein FUS-like [Malus domestica]
Length = 658
Score = 281 bits (719), Expect = 7e-73
Identities = 168/363 (46%), Positives = 201/363 (55%), Gaps = 4/363 (1%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLP--DPGIDALRNAQQMQVNR--VPG 914
QV MGFQGS T PP G D + + K G + +P +PG A Q+ N+ +
Sbjct: 155 QVRQMGFQGSTTIPPNVGIDSSDITGK--GNSEYIPSLNPGTAGPPGAAQIPTNQMSIKI 212
Query: 913 NVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGK 734
N NRP+V++N IRP ++NG+ M+FVG+LHWWTTDAE+E LSQYGRVKEIKFFDERASGK
Sbjct: 213 NANRPMVNENQIRPPIENGSAMLFVGELHWWTTDAEIESXLSQYGRVKEIKFFDERASGK 272
Query: 733 SKGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQ 554
SKGYCQVEF++ +AA ACKEGM G++FNGRACVVAFASPQ+LKQMGA+YL+K+Q QAQAQ
Sbjct: 273 SKGYCQVEFHDPAAATACKEGMDGYVFNGRACVVAFASPQTLKQMGASYLSKSQXQAQAQ 332
Query: 553 PQGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXX 374
GRR +D GDTGGRNF +
Sbjct: 333 QPGRRPMND---GVGRGAGVNFQAGDTGGRNFGR-GGWGRGGQGGRGPGGGGPMRGRGGA 388
Query: 373 XXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXX 194
KNM+ Y Q PQ MMG+GFDPT
Sbjct: 389 MGVKNMVGNPAGVGTGANGGG-YGQ-GLGGPGFGGPVGMMNPQGMMGSGFDPTYMGRGGG 446
Query: 193 XXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGM 14
PQ+PG+N MGL GVAPHVNPAFFGR ME HH GM
Sbjct: 447 YGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGSSGMEGHHAGM 506
Query: 13 WGN 5
W +
Sbjct: 507 WND 509
>ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Gossypium raimondii]
gi|823252908|ref|XP_012459071.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185
[Gossypium raimondii] gi|763811133|gb|KJB78035.1|
hypothetical protein B456_012G173800 [Gossypium
raimondii]
Length = 648
Score = 280 bits (717), Expect = 1e-72
Identities = 161/357 (45%), Positives = 196/357 (54%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVNR 902
QV NMGFQG +A K G P+ +P K + + G + A Q+ N++ NVN
Sbjct: 151 QVKNMGFQGLTSASSKVGTGPSVVPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNH 210
Query: 901 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 722
P++++N +RP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSKGY
Sbjct: 211 PMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGY 270
Query: 721 CQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 542
CQVEFY+S++AAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q Q QPQGR
Sbjct: 271 CQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGR 330
Query: 541 RVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 362
R P++ G GRN+ + K
Sbjct: 331 R-PNE----GFGKGGNMNYQGGDAGRNYGR--GGWGRGGQAGNRGGGGGPMRGRGGVGVK 383
Query: 361 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 182
NM+ A Y PQ MMGAGFDPT
Sbjct: 384 NMVGSSAGVGNGAYGAGAYGPGPGGPAFGGPAGGMMHPQGMMGAGFDPTYMGRGGGYGGF 443
Query: 181 XXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMW 11
P +P +N MGL GVAPHVNPAFFGR M+ H GMW
Sbjct: 444 PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGLGMMGVAGMDGPHSGMW 500
>gb|KHG22501.1| Cleavage and polyadenylation specificity factor subunit [Gossypium
arboreum]
Length = 648
Score = 278 bits (712), Expect = 4e-72
Identities = 160/357 (44%), Positives = 196/357 (54%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVNR 902
QV NMGFQG +A K G P+ +P K + + G + A Q+ N++ NVN
Sbjct: 151 QVKNMGFQGLTSASSKVGTGPSVVPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNH 210
Query: 901 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 722
P++++N +RP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSKGY
Sbjct: 211 PMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGY 270
Query: 721 CQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 542
CQVEFY+S++AAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q Q QPQGR
Sbjct: 271 CQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGR 330
Query: 541 RVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 362
R P++ G GRN+ + K
Sbjct: 331 R-PNE----GFGKGGNMNYQGGDAGRNYGR--GGWGRGGQAGNRGGGGGPMRGRGGVGVK 383
Query: 361 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 182
+M+ A Y PQ MMGAGFDPT
Sbjct: 384 SMVGSSAGVGNGGYGAGAYGPGPGGPAFGGPAGGMMHPQGMMGAGFDPTYMGRGGGYGGF 443
Query: 181 XXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMW 11
P +P +N MGL GVAPHVNPAFFGR M+ H GMW
Sbjct: 444 PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGLGMMGVAGMDGPHSGMW 500
>ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Prunus mume]
Length = 647
Score = 277 bits (709), Expect = 1e-71
Identities = 163/362 (45%), Positives = 195/362 (53%), Gaps = 3/362 (0%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVP--GNV 908
QV +MGFQGS T PP G D + + K + + + G QM N++ N
Sbjct: 156 QVRHMGFQGSTTMPPNIGGDSSDITGKTALESVPSMNSGTAGPTGVTQMPTNQISIKVNA 215
Query: 907 NRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 728
NRP+ ++N +RP V+NG+TM+FVG+LHWWTTD+ELE VLSQYGRVKEIKFFDERASGKSK
Sbjct: 216 NRPMFNENQVRPTVENGSTMLFVGELHWWTTDSELESVLSQYGRVKEIKFFDERASGKSK 275
Query: 727 GYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 548
GYCQVEF++ +AA ACKEGM G+LFNGRACVVAFASPQ+LKQMGA+YL+K+Q Q Q+Q
Sbjct: 276 GYCQVEFHDPAAATACKEGMDGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQP 335
Query: 547 GRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNK-VXXXXXXXXXXXXXXXXXXXXXXXXXX 371
GRR +D GDTGGRNF +
Sbjct: 336 GRRPMND---GVGRGGGVNYQTGDTGGRNFGRGGWGRGGQGVANRGPGGGGPMRGRGGAM 392
Query: 370 XAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXX 191
AKNM Y Q PQ MMGAGFDPT
Sbjct: 393 GAKNM--AGNPAGVGTGANGGYGQGLAGPGFGGPVGGMMNPQGMMGAGFDPTYMGRGGGY 450
Query: 190 XXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMW 11
+P +N MGL GVAPHVNPAFFGR M+ HH GMW
Sbjct: 451 GGFPGPAFPGMLSSFPAVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMDGHHAGMW 510
Query: 10 GN 5
+
Sbjct: 511 ND 512
>ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
6-like [Jatropha curcas] gi|802723892|ref|XP_012085552.1|
PREDICTED: cleavage and polyadenylation specificity
factor subunit 6-like [Jatropha curcas]
gi|802723894|ref|XP_012085553.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit 6-like
[Jatropha curcas] gi|643714049|gb|KDP26714.1|
hypothetical protein JCGZ_17872 [Jatropha curcas]
Length = 656
Score = 276 bits (706), Expect = 2e-71
Identities = 160/361 (44%), Positives = 195/361 (54%), Gaps = 2/361 (0%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGN--V 908
Q N+GF GS++ P G DP+ M K + +P+ R Q+ N++ N V
Sbjct: 150 QARNIGFHGSSSVPSNIGVDPSDMSRKTANEPAPVPNTAATGPRGMPQLPGNQISINMDV 209
Query: 907 NRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 728
NRP V++N IRP V+NG+T++FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSK
Sbjct: 210 NRPTVNENQIRPPVENGSTVLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSK 269
Query: 727 GYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 548
G+CQVEFY+++AAAACKEGM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q+Q Q Q
Sbjct: 270 GFCQVEFYDAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQSQTQNQ 329
Query: 547 GRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXX 368
GRR +D G GRNF +
Sbjct: 330 GRRPMND----GAGRGDNMNYQGGDAGRNFGRGGWGRGGQGMMNRGPGGGGPMRGRGAMG 385
Query: 367 AKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXX 188
KNM+ Y Q PQNMMGAGFDPT
Sbjct: 386 PKNMIGGAGGVGSGANGGG-YGQGLVGPAFGGLAGGMMPPQNMMGAGFDPTYMGRGAAYG 444
Query: 187 XXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMWG 8
P +P +N MGL GVAPHVNPAFFGR M+ + GMW
Sbjct: 445 GFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGRGMAPNGMGMMGPSGMDGPNAGMWS 504
Query: 7 N 5
+
Sbjct: 505 D 505
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 276 bits (706), Expect = 2e-71
Identities = 168/362 (46%), Positives = 198/362 (54%), Gaps = 6/362 (1%)
Frame = -2
Query: 1078 VGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGI----DALRNAQQMQVNRVPGN 911
V NMGFQGS + PP+ G DP+ MP + + + +PG AL A QM VN N
Sbjct: 157 VRNMGFQGSTSGPPRTGVDPSNMPGRVANEPAPVLNPGAAGPQGALIPANQMGVNI---N 213
Query: 910 VNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKS 731
VNR +V++N IRP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKS
Sbjct: 214 VNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKS 273
Query: 730 KGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQP 551
KGYCQVEF++++AAAACK+GM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q Q+Q
Sbjct: 274 KGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQT 333
Query: 550 QGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXX 371
QGRR +D GGRNF +
Sbjct: 334 QGRRPMND----GGGRGGNMNYQSGDGGRNFGR-GGWGRGGQGVPNRGPGGGAMRGRGPM 388
Query: 370 XAKNMM--XXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXX 197
AKNMM Y Q PQNMMG GFDPT
Sbjct: 389 GAKNMMGSSSGAGSGAGPAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGG 447
Query: 196 XXXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPG 17
P +P +N MGL GVAPHVNPAFF R M+ HPG
Sbjct: 448 GYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPG 507
Query: 16 MW 11
MW
Sbjct: 508 MW 509
>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Solanum tuberosum]
gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185-like
isoform X2 [Solanum tuberosum]
Length = 648
Score = 275 bits (703), Expect = 5e-71
Identities = 160/361 (44%), Positives = 196/361 (54%), Gaps = 4/361 (1%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVK-FSGATPLLPD--PGIDALRNAQQMQVNRVPG- 914
Q GN G+QGS P K GADP MP K S ATPL+ PG + + Q+N
Sbjct: 151 QAGNSGYQGSMPMPQKIGADPMAMPEKNASEATPLMNSVVPGPRVVPHMPTNQLNSSGNV 210
Query: 913 NVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGK 734
N+N P++S+ P RP+++NG TM+FVG+LHWWTTDAELE VL+QYG VKEIKFFDERASGK
Sbjct: 211 NMNNPVISETPFRPSLENGNTMLFVGELHWWTTDAELESVLTQYGNVKEIKFFDERASGK 270
Query: 733 SKGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQ 554
SKGYCQVEF++ ++AAACKEGM+G+ FNGRACVVAFA+PQ++KQMG++Y NK Q Q Q+Q
Sbjct: 271 SKGYCQVEFFDPASAAACKEGMNGYNFNGRACVVAFATPQTIKQMGSSYANKTQNQVQSQ 330
Query: 553 PQGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXX 374
PQGRR ++ GRNF +
Sbjct: 331 PQGRRPMNE-----GVGRGGPNYTPGDAGRNFGR-GSWGRGGPGMPNRGPGGGPVRGRGA 384
Query: 373 XXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXX 194
+KNMM + Q PQ MMG GFDP+
Sbjct: 385 MGSKNMM---VNPGAGNGAGGAFGQGLAGPAFGGPPAGLMHPQGMMGPGFDPSFMGRGAG 441
Query: 193 XXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGM 14
P + +NPMGLPGVAPHVNPAFFGR M+ HPGM
Sbjct: 442 YGGFSGPAFPGMMPPFQAVNPMGLPGVAPHVNPAFFGRGMAANGMGMMSAAGMDGPHPGM 501
Query: 13 W 11
W
Sbjct: 502 W 502
>ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobroma cacao]
gi|508708844|gb|EOY00741.1| RNA-binding family protein
isoform 6 [Theobroma cacao]
Length = 602
Score = 273 bits (699), Expect = 1e-70
Identities = 157/360 (43%), Positives = 197/360 (54%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVNR 902
QV N+GFQG +A K G DP+ +P K + + G + + N++ NVN
Sbjct: 155 QVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNH 214
Query: 901 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 722
P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+ASGKSKGY
Sbjct: 215 PVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGY 274
Query: 721 CQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 542
CQVEFY+ S+AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+QAQPQGR
Sbjct: 275 CQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGR 334
Query: 541 RVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 362
R P++ GRN+ + K
Sbjct: 335 R-PNE----GLGRGGNLNYQSGDAGRNYGR-GGWGRGGQGGVNRAGGGGLMRGRGGVGVK 388
Query: 361 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 182
NM+ A Y Q PQ MMGAGFDPT
Sbjct: 389 NMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGF 447
Query: 181 XXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMWGNA 2
P +P +N MGL GVAPHVNPAFFGR M+ H GMW +A
Sbjct: 448 PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDA 507
>ref|XP_007044908.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
gi|508708843|gb|EOY00740.1| RNA-binding family protein
isoform 5, partial [Theobroma cacao]
Length = 656
Score = 273 bits (699), Expect = 1e-70
Identities = 157/360 (43%), Positives = 197/360 (54%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVNR 902
QV N+GFQG +A K G DP+ +P K + + G + + N++ NVN
Sbjct: 155 QVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNH 214
Query: 901 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 722
P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+ASGKSKGY
Sbjct: 215 PVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGY 274
Query: 721 CQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 542
CQVEFY+ S+AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+QAQPQGR
Sbjct: 275 CQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGR 334
Query: 541 RVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 362
R P++ GRN+ + K
Sbjct: 335 R-PNE----GLGRGGNLNYQSGDAGRNYGR-GGWGRGGQGGVNRAGGGGLMRGRGGVGVK 388
Query: 361 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 182
NM+ A Y Q PQ MMGAGFDPT
Sbjct: 389 NMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGF 447
Query: 181 XXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMWGNA 2
P +P +N MGL GVAPHVNPAFFGR M+ H GMW +A
Sbjct: 448 PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDA 507
>ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobroma cacao]
gi|508708842|gb|EOY00739.1| RNA-binding family protein
isoform 4 [Theobroma cacao]
Length = 697
Score = 273 bits (699), Expect = 1e-70
Identities = 157/360 (43%), Positives = 197/360 (54%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVNR 902
QV N+GFQG +A K G DP+ +P K + + G + + N++ NVN
Sbjct: 155 QVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNH 214
Query: 901 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 722
P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+ASGKSKGY
Sbjct: 215 PVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGY 274
Query: 721 CQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 542
CQVEFY+ S+AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+QAQPQGR
Sbjct: 275 CQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGR 334
Query: 541 RVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 362
R P++ GRN+ + K
Sbjct: 335 R-PNE----GLGRGGNLNYQSGDAGRNYGR-GGWGRGGQGGVNRAGGGGLMRGRGGVGVK 388
Query: 361 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 182
NM+ A Y Q PQ MMGAGFDPT
Sbjct: 389 NMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGF 447
Query: 181 XXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMWGNA 2
P +P +N MGL GVAPHVNPAFFGR M+ H GMW +A
Sbjct: 448 PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDA 507
>ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695496|ref|XP_007044905.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|590695500|ref|XP_007044906.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708839|gb|EOY00736.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708840|gb|EOY00737.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708841|gb|EOY00738.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 652
Score = 273 bits (699), Expect = 1e-70
Identities = 157/360 (43%), Positives = 197/360 (54%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRVPGNVNR 902
QV N+GFQG +A K G DP+ +P K + + G + + N++ NVN
Sbjct: 155 QVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNH 214
Query: 901 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 722
P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+ASGKSKGY
Sbjct: 215 PVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGY 274
Query: 721 CQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 542
CQVEFY+ S+AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+QAQPQGR
Sbjct: 275 CQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGR 334
Query: 541 RVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 362
R P++ GRN+ + K
Sbjct: 335 R-PNE----GLGRGGNLNYQSGDAGRNYGR-GGWGRGGQGGVNRAGGGGLMRGRGGVGVK 388
Query: 361 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 182
NM+ A Y Q PQ MMGAGFDPT
Sbjct: 389 NMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGF 447
Query: 181 XXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMWGNA 2
P +P +N MGL GVAPHVNPAFFGR M+ H GMW +A
Sbjct: 448 PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDA 507
>ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
6-like [Malus domestica]
Length = 656
Score = 272 bits (696), Expect = 3e-70
Identities = 165/364 (45%), Positives = 201/364 (55%), Gaps = 4/364 (1%)
Frame = -2
Query: 1084 PQVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLP--DPGIDALRNAQQMQVNR--VP 917
PQV +M FQGS T PP G D + + K G + +P +P A Q+ N+ +
Sbjct: 154 PQVRHMAFQGSTTMPPNVGVDSSDITGK--GNSEFVPSLNPASAGPPGATQILTNQMSIK 211
Query: 916 GNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASG 737
N NRP+V++N IRP ++NG+ +FVG+LHWWTTDAE+E V+SQYGRVKEIKFFDERASG
Sbjct: 212 INANRPMVNENQIRPPIENGSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFDERASG 271
Query: 736 KSKGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQA 557
KSKGYCQVEF++ +AA ACKEGM G++FNGRACV A+ASPQ+LKQMGA+YL+K+Q QAQA
Sbjct: 272 KSKGYCQVEFHDQAAATACKEGMDGYVFNGRACVXAYASPQTLKQMGASYLSKSQGQAQA 331
Query: 556 QPQGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXX 377
Q GRR +D GD GGRNF +
Sbjct: 332 QQPGRRPMND---GGGRGXGVNFQAGDPGGRNFGR-GGWGRGGQGVRGPGGGGPMRGRGG 387
Query: 376 XXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXX 197
AKNM+ Y Q PQ MMG+GFDPT
Sbjct: 388 VMGAKNMVGNPAGVGTGANGGG-YGQ-GLGGPGFGGPVGMMNPQGMMGSGFDPTYMGRGG 445
Query: 196 XXXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPG 17
PQ+PG+N MGL GVAPHVNPAFFGR ME HH G
Sbjct: 446 GYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMEGHHAG 505
Query: 16 MWGN 5
MW +
Sbjct: 506 MWND 509
>ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
[Pyrus x bretschneideri]
Length = 656
Score = 271 bits (692), Expect = 9e-70
Identities = 164/363 (45%), Positives = 199/363 (54%), Gaps = 4/363 (1%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLP--DPGIDALRNAQQMQVNR--VPG 914
QV +M FQGS T PP G D + + K G + +P +P A Q+ N+ +
Sbjct: 155 QVRHMAFQGSTTMPPNVGVDSSDITGK--GNSEFVPSLNPASAGPPGATQIPTNQMSIKI 212
Query: 913 NVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGK 734
N NRP+V++N IRP ++NG+ +FVG+LHWWTTDAE+E V+SQYGRVKEIKFFDERASGK
Sbjct: 213 NANRPMVNENQIRPPIENGSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFDERASGK 272
Query: 733 SKGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQ 554
SKGYCQVEF++ +AA ACKEGM G++FNGRACVVAFASPQ+LKQMGA+YL+K+Q QAQAQ
Sbjct: 273 SKGYCQVEFHDQAAATACKEGMDGYVFNGRACVVAFASPQTLKQMGASYLSKSQGQAQAQ 332
Query: 553 PQGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXX 374
GRR +D GD GGRNF +
Sbjct: 333 QPGRRPMND---GGGRGGGVNFQAGDPGGRNFGR-GGWGRGGQGVRGPGGGGPMRGRGGA 388
Query: 373 XXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXX 194
AKNM+ Y Q PQ MMG+GFDPT
Sbjct: 389 MGAKNMVGNPAGVGTGTNGGG-YGQ-GLGGPGFGGPVGMMNPQGMMGSGFDPTYMGRGGG 446
Query: 193 XXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGM 14
PQ+PG+N MGL GVAPHVNPAFF R ME HH GM
Sbjct: 447 YGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFARGMATNGMGMMGSSGMEGHHAGM 506
Query: 13 WGN 5
W +
Sbjct: 507 WND 509
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 270 bits (691), Expect = 1e-69
Identities = 165/362 (45%), Positives = 197/362 (54%), Gaps = 6/362 (1%)
Frame = -2
Query: 1078 VGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGI----DALRNAQQMQVNRVPGN 911
V NMGFQGS + P + G DP+ MP + + + +PG AL A QM VN N
Sbjct: 157 VRNMGFQGSTSGPSRTGVDPSNMPGRVANEPAPVLNPGAAGPQGALIPANQMGVNI---N 213
Query: 910 VNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKS 731
VNR +V++N IRP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKS
Sbjct: 214 VNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKS 273
Query: 730 KGYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQP 551
KGYCQVEF++++AAAACK+GM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q Q+Q
Sbjct: 274 KGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQT 333
Query: 550 QGRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXX 371
QGRR +D GGRNF +
Sbjct: 334 QGRRPMND----GGGRGGNMNYQSGDGGRNFGR-GGWGRGGQGVPNRGPGGGAMRGRGPM 388
Query: 370 XAKNMM--XXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXX 197
A+NM+ Y Q PQNMMG GFDPT
Sbjct: 389 GARNMIGSSSGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGG 447
Query: 196 XXXXXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPG 17
P +P +N MGL GVAPHVNPAFF R M+ HPG
Sbjct: 448 GYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPG 507
Query: 16 MW 11
MW
Sbjct: 508 MW 509
>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus trichocarpa]
gi|222852472|gb|EEE90019.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 619
Score = 270 bits (690), Expect = 2e-69
Identities = 159/359 (44%), Positives = 190/359 (52%), Gaps = 2/359 (0%)
Frame = -2
Query: 1081 QVGNMGFQGSATAPPKFGADPNQMPVKFSGATPLLPDPGIDALRNAQQMQVNRV--PGNV 908
QV NMGFQ S PP G DP+ M K + LP G R A QMQVN++ +V
Sbjct: 139 QVRNMGFQKSTPVPPGIGVDPSDMSRKNAIEPEPLPITGSAGPRGAPQMQVNQMHMSADV 198
Query: 907 NRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 728
NRP+V++N +RP ++NG+T ++VG+LHWWTTDAELE SQ+GRVKEIKFFDERASGKSK
Sbjct: 199 NRPVVNENQVRPPIENGSTTLYVGELHWWTTDAELESFASQFGRVKEIKFFDERASGKSK 258
Query: 727 GYCQVEFYESSAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 548
GYCQV+FYE++AAAACKEGM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q Q Q Q
Sbjct: 259 GYCQVDFYEAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQPQTQSQ 318
Query: 547 GRRVPSDXXXXXXXXXXXXXXXGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXX 368
GR +D GGRN+ +
Sbjct: 319 GRGSMND----GAGRGGNANFQSGDGGRNYGR-GAWGRGGQGILNRGPGGGPMRGRGAMG 373
Query: 367 AKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXX 188
KNM Y Q PQ MMGAGFDP
Sbjct: 374 PKNMAGNVAGVGSGANGGG-YGQGLAGPAFGGPAGGMMPPQGMMGAGFDPLYMGRGGGYG 432
Query: 187 XXXXXXXXXXXPQYPGMNPMGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHHPGMW 11
P +P +N MGL GVAPHVNPAFF R M+ +PGMW
Sbjct: 433 GFAGPGFPGMLPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMVSSGMDGPNPGMW 491