BLASTX nr result
ID: Papaver29_contig00018430
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver29_contig00018430
(2117 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008370919.1| PREDICTED: uncharacterized protein LOC103434... 430 e-150
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 379 e-142
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 352 e-137
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 369 e-136
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 370 e-135
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 366 e-135
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 361 e-135
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 370 e-134
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 379 e-134
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 365 e-133
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 364 e-132
ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905... 365 e-131
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 348 e-128
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 369 e-126
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 335 e-126
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 365 e-126
gb|AFB73912.1| polyprotein [Citrus sinensis] 352 e-125
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 345 e-125
gb|AFB73911.1| polyprotein [Citrus sinensis] 351 e-125
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 337 e-124
>ref|XP_008370919.1| PREDICTED: uncharacterized protein LOC103434364 [Malus domestica]
Length = 1100
Score = 430 bits (1105), Expect(4) = e-150
Identities = 217/303 (71%), Positives = 249/303 (82%), Gaps = 3/303 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHGDLEE IYM QPEGF+VAGK++ VC L++SLYG KQSPRQWYKRFD+FM QKYT S+
Sbjct: 69 LHGDLEEEIYMSQPEGFKVAGKKNWVCKLEKSLYGLKQSPRQWYKRFDEFMIGQKYTRSH 128
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YD CVYF+KL+DE+FIYLLLYVDDMLI KS+VEI+ LK QLS+EFEMKDLG+ARKILGM
Sbjct: 129 YDHCVYFRKLQDETFIYLLLYVDDMLITCKSKVEIERLKTQLSNEFEMKDLGEARKILGM 188
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EIERDR I+L QK YLKK+ +RF +++ +K V+ PLA HFKL+A SPKTVEE + M
Sbjct: 189 EIERDRAKGKISLCQKQYLKKVLQRFRMNENSKLVSTPLASHFKLSASMSPKTVEESQYM 248
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
A+IPY + GSLMYAMVCTRPDISQAVS+VSRYMHNPG AVKWILRYI GTVDVGL
Sbjct: 249 AQIPYANVVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGL 308
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
F R++ TG VVGY + DYA DLDK RS TG+VFT GP+SWRS LQ TVALST EAE
Sbjct: 309 LFQRDKFTGQCVVGYVDFDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAE 368
Query: 753 YMA 745
YMA
Sbjct: 369 YMA 371
Score = 88.6 bits (218), Expect(4) = e-150
Identities = 48/95 (50%), Positives = 66/95 (69%)
Frame = -1
Query: 635 NQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFRHCLNLISI 456
NQVYHARTKHI+VR+H VR+I++EG+I L+K+GTA+N ADMLTK V+ KF+HCL+L+
Sbjct: 372 NQVYHARTKHIDVRFHFVREIIDEGDILLQKIGTADNLADMLTKPVSLLKFKHCLDLLDA 431
Query: 455 VHI*RHLRV*WCCQAHVKPKKEVKHLIMSEEVKHL 351
+H+R C + + +K L EEV L
Sbjct: 432 ASA-QHVRGCSMCMS-----EAIKALCWFEEVAEL 460
Score = 50.4 bits (119), Expect(4) = e-150
Identities = 29/58 (50%), Positives = 34/58 (58%)
Frame = -1
Query: 1811 NVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLDVKTAYM 1638
NVR+KARLVAKGYAQ +GI+YNE F LEL LDVKTA++
Sbjct: 32 NVRFKARLVAKGYAQNEGINYNE--------------------FDLELAQLDVKTAFL 69
Score = 38.5 bits (88), Expect(4) = e-150
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2
Query: 1879 LPKGEKAIGCKWVYTKK 1829
LPKG+KAIGCKWVY KK
Sbjct: 8 LPKGKKAIGCKWVYAKK 24
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 379 bits (974), Expect(4) = e-142
Identities = 192/330 (58%), Positives = 242/330 (73%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QP+GF+V GKE+ VC LK+SLYG KQSPRQWYKRFD +M YT S+
Sbjct: 909 LHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSS 968
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YD CVY+ +L D+SFIYL+LYVDDMLIA+K + +IQ LK LS+EFEMKDLG ARKILGM
Sbjct: 969 YDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGM 1028
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR + LSQ+SY++K+ RFG+ +KP+ P A + L A +P++ EE+ M
Sbjct: 1029 EIIRDRERRKLFLSQRSYIQKVLARFGM-SSSKPIDTPSAANIHLTAMFAPQSEEEKEYM 1087
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY SA GSLMYAMVCTRPD++ AVSVVSR+M PG AVK I RY+ GT DVGL
Sbjct: 1088 SRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGL 1147
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+ + T C V GY +SDYA D+D RS+TGYVFT +SW++TLQPTV LST EAE
Sbjct: 1148 IYGGD--TQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAE 1205
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
YMA E +E +W+KGL +LG+ ++ +V
Sbjct: 1206 YMALTEAAKEGIWLKGLVSDLGLHHDQATV 1235
Score = 90.1 bits (222), Expect(4) = e-142
Identities = 43/66 (65%), Positives = 54/66 (81%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG A V+YKAR+VA+G+ QR+G+DYNE+FSPVV HTSIR+LLA+VA LEL LD
Sbjct: 844 KEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLD 903
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 904 VKTAFL 909
Score = 79.0 bits (193), Expect(4) = e-142
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = -1
Query: 656 SNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFRH 477
S I LAK+QV+H RTKHI+VRYH +R E I+++KVGTA+NPADM TK V KF+H
Sbjct: 1241 SAICLAKDQVHHERTKHIDVRYHFLRS---EKRIKVKKVGTADNPADMFTKPVPQSKFQH 1297
Query: 476 CLNLISI 456
CL+L++I
Sbjct: 1298 CLDLLNI 1304
Score = 30.0 bits (66), Expect(4) = e-142
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 1939 AAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
AA+ D +ES + P G K I CKWV+ KK+
Sbjct: 808 AAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKE 845
Score = 70.1 bits (170), Expect = 8e-09
Identities = 37/78 (47%), Positives = 49/78 (62%)
Frame = -2
Query: 2116 VPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKHGNLYFLQGNTSVSEGIA 1937
VP M KNLIS+ LDS+GF + K GVL+V +++KG+ G LYFLQG+T
Sbjct: 341 VPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHV 400
Query: 1936 AVSDSVESDTTKLCHMRL 1883
A S+ + D TKL H+RL
Sbjct: 401 ASSEFHQKDMTKLWHIRL 418
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
vulgaris]
Length = 1947
Score = 352 bits (902), Expect(4) = e-137
Identities = 182/330 (55%), Positives = 231/330 (70%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE I M QPEGF V GKE C+LK+SLYG KQSPRQWYKRFD FM + S
Sbjct: 1022 LHGELEEDILMSQPEGFVVPGKEKFACSLKKSLYGLKQSPRQWYKRFDSFMVEHGFDRSP 1081
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YD CVY K++D S+IYLLLYVDDMLIA+K + ++ LK LSSEF+MKDLG A+KILGM
Sbjct: 1082 YDCCVYHSKVEDGSYIYLLLYVDDMLIAAKKKSDVLKLKKLLSSEFDMKDLGAAKKILGM 1141
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RD + LSQKSY+ K+ RFG+ AK + P A + +L+ SP++ EE+ M
Sbjct: 1142 EIYRDHGRKKLFLSQKSYILKVLDRFGM-STAKSIDTPAAANARLSVVLSPQSDEEKEYM 1200
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+++PY SA GSLMYAMVCTRPD++ AVSVVSR+M PG AVK I RY+ GT DVGL
Sbjct: 1201 SKVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMTQPGKEHWQAVKRIFRYLRGTADVGL 1260
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+ + T C V GY +SDYA D+D RS+TGYV+T +SW++TLQ +V LST EAE
Sbjct: 1261 IYGND--TECLVTGYSDSDYAGDIDTRRSMTGYVYTLGGSVVSWKATLQSSVTLSTTEAE 1318
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
YMA +E +W++GL +LG+ ++ V
Sbjct: 1319 YMALTAAAKEGIWLRGLVSDLGLHHDRAIV 1348
Score = 98.2 bits (243), Expect(4) = e-137
Identities = 46/66 (69%), Positives = 57/66 (86%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG+ +VRYKARLVAKG++QR+G+DYNE+FSPVV HTSIR+LLA+VA F LEL LD
Sbjct: 957 KEGTSEGESVRYKARLVAKGFSQREGVDYNEIFSPVVRHTSIRVLLAMVAHFDLELEQLD 1016
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 1017 VKTAFL 1022
Score = 77.0 bits (188), Expect(4) = e-137
Identities = 39/67 (58%), Positives = 51/67 (76%)
Frame = -1
Query: 656 SNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFRH 477
S I LAK+QV+H RTKHI+VRYH +R E I ++KVGTA+NPADM TK V KF+H
Sbjct: 1354 SAICLAKDQVHHDRTKHIDVRYHFLRS---EKRIVVKKVGTADNPADMFTKPVPVRKFKH 1410
Query: 476 CLNLISI 456
CL+L+++
Sbjct: 1411 CLDLLNV 1417
Score = 34.7 bits (78), Expect(4) = e-137
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
+ A+S+ +ES + +P+G K +GCKWV+ +K+
Sbjct: 920 LVAMSEEMESLHKNQTWELVRIPQGRKVVGCKWVFKRKE 958
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 369 bits (947), Expect(4) = e-136
Identities = 194/321 (60%), Positives = 237/321 (73%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QPEGF V GKE VC LKRSLYG KQSPRQW KRFD FM + + S
Sbjct: 935 LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY K + + S IYLLLYVDDMLIA+KS++EI LK LSSEF+MKDLG A+KILGM
Sbjct: 995 YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1053
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR+S + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+A Q P E M
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSIDAEIEYM 1112
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG AV+WI RY+ GT L
Sbjct: 1113 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCL 1172
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
KF R ++ ++GY +SDYA DLD+ RS+TGYVFT S +SWR+TLQ VALST EAE
Sbjct: 1173 KFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +E +W+KGL+ EL
Sbjct: 1230 YMAICEACKELIWLKGLYAEL 1250
Score = 81.6 bits (200), Expect(4) = e-136
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG S+ +YKARLVA+GY+Q G+DYN+VFSPVV H+SIR L++VA LEL LD
Sbjct: 870 KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 929
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 930 VKTAFL 935
Score = 78.2 bits (191), Expect(4) = e-136
Identities = 32/69 (46%), Positives = 53/69 (76%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I+L K+Q++H RTKHI+++YH VR ++EEG++++ K+ T +NPADM+TK + KF
Sbjct: 1264 QSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFE 1323
Query: 479 HCLNLISIV 453
C +L+ ++
Sbjct: 1324 LCSSLVGLI 1332
Score = 29.6 bits (65), Expect(4) = e-136
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I+A+ + ++S + LPK +K I CKW++ +K+
Sbjct: 833 ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 871
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 370 bits (950), Expect(4) = e-135
Identities = 194/321 (60%), Positives = 243/321 (75%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM+QP+GF V GKE+ VC LK+SLYG KQSPRQWYKRFD FM +QK+ SN
Sbjct: 1141 LHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSN 1200
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY K+ D S IYLLLYVDDMLIA+K + EI LK QLSSEFEMKDLG A+KILGM
Sbjct: 1201 YDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGM 1259
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI R R S + LSQK Y++K+ +RF + D AKPV+ PLA HF+L+++ P++ + M
Sbjct: 1260 EITRKRHSFKLYLSQKGYIEKVLRRFNMHD-AKPVSTPLAAHFRLSSDLCPQSDYDIEYM 1318
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY+SA GSLMYAMVC+RPD+S A+SVVSRYM NPG AV+WI RY+ GT L
Sbjct: 1319 SRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACL 1378
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+F R+ R G +VGY +SD+A DLD+ RS+ GYVFT +SW+++LQ TVALST EAE
Sbjct: 1379 QFGRS-RDG--LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAE 1435
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +EA+W++GL+ L
Sbjct: 1436 YMAISEACKEAIWLRGLYTVL 1456
Score = 82.8 bits (203), Expect(4) = e-135
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG S+ RYKARL+AKGY+Q GID+N+VFSPVV H+SIR LL++VA EL +D
Sbjct: 1076 KEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMD 1135
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 1136 VKTAFL 1141
Score = 72.8 bits (177), Expect(4) = e-135
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I L K+Q++H RTKHI+VRYH +R ++ EG++++ K+ +NPADM+TK V KF
Sbjct: 1470 QSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFE 1529
Query: 479 HCLNLI 462
C +L+
Sbjct: 1530 LCSSLV 1535
Score = 31.6 bits (70), Expect(4) = e-135
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I A+ D +ES ++LPK +K I CKW++ +K+
Sbjct: 1039 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 1077
Score = 63.9 bits (154), Expect = 5e-07
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = -2
Query: 2116 VPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKG-LKHGNLYFLQGNTSVSEGI 1940
+P +K++LIS+ LD +G++ + G+LKV LVVMK +K NLY L+G T++ +
Sbjct: 569 IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG-TTILGNV 627
Query: 1939 AAVSDSV-ESDTTKLCHMRL 1883
AAVSDS+ SD T L HMRL
Sbjct: 628 AAVSDSLSNSDATNLWHMRL 647
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 366 bits (940), Expect(4) = e-135
Identities = 193/321 (60%), Positives = 236/321 (73%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QPEGF V GKE VC LKRSLYG KQSPRQW KRFD FM + + S
Sbjct: 935 LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY K + + S IYLLLYVDDMLIA+KS++EI LK LSSEF+MKDLG A+KIL M
Sbjct: 995 YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVM 1053
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR+S + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+A Q P T E M
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSTDAEIEYM 1112
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG V+WI RY+ GT L
Sbjct: 1113 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCL 1172
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
KF R ++ ++GY +SDYA DLD+ RS+TGYVFT S +SWR+TLQ VALST EAE
Sbjct: 1173 KFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +E +W+KGL+ EL
Sbjct: 1230 YMAICEACKELIWLKGLYAEL 1250
Score = 81.6 bits (200), Expect(4) = e-135
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG S+ +YKARLVA+GY+Q G+DYN+VFSPVV H+SIR L++VA LEL LD
Sbjct: 870 KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 929
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 930 VKTAFL 935
Score = 78.2 bits (191), Expect(4) = e-135
Identities = 32/69 (46%), Positives = 53/69 (76%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I+L K+Q++H RTKHI+++YH VR ++EEG++++ K+ T +NPADM+TK + KF
Sbjct: 1264 QSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFE 1323
Query: 479 HCLNLISIV 453
C +L+ ++
Sbjct: 1324 LCSSLVGLI 1332
Score = 29.6 bits (65), Expect(4) = e-135
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I+A+ + ++S + LPK +K I CKW++ +K+
Sbjct: 833 ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 871
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 361 bits (927), Expect(4) = e-135
Identities = 183/330 (55%), Positives = 232/330 (70%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHGDLEE IYM QPEGF GKE+ VC LK+SLYG KQSPRQWYK FD +M YT
Sbjct: 900 LHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQ 959
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YD CVY+ +D I LLLYVDDMLIA + ++IQ LK +L +EF+MKDLG A+KILG+
Sbjct: 960 YDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGI 1019
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR + I LSQ+ Y+ K+ +RF + + AK V+ PLA HF+L+AEQ P +E +M
Sbjct: 1020 EIRRDRNAGKIWLSQEKYIMKILERFNMAE-AKVVSIPLAAHFRLSAEQRPSDQKEIDMM 1078
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGTL---AVKWILRYI*GTVDVGL 934
+PY SA G LMYAM+CTRPD++QA+SVVS+YM NPG AVKWI +Y+ T +G+
Sbjct: 1079 KNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGI 1138
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
F R + C V G+ +SD+A DLD+ RS GYVFT GP+SW++TLQ ALST EAE
Sbjct: 1139 MFERRQGEAC-VAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAE 1197
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
YMA E +EA+W+ GL +LG+ QE + V
Sbjct: 1198 YMALTEASKEAIWLNGLAGQLGVHQEGVVV 1227
Score = 85.9 bits (211), Expect(4) = e-135
Identities = 38/66 (57%), Positives = 54/66 (81%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG + YKARLVAKGY+Q++G+DY+E+FSPVV HTSIR+LL++ AQ+ +E+ +D
Sbjct: 835 KEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMD 894
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 895 VKTAFL 900
Score = 77.0 bits (188), Expect(4) = e-135
Identities = 38/59 (64%), Positives = 46/59 (77%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKF 483
QS IHLAKNQV+HARTKHI+ RYH++R VE G I +EKV T +N AD LTK V+ EK+
Sbjct: 1232 QSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEKY 1290
Score = 31.6 bits (70), Expect(4) = e-135
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I A+++ +ES + PK K +GCKWV+ KK+
Sbjct: 798 IGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKE 836
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 370 bits (950), Expect(4) = e-134
Identities = 194/321 (60%), Positives = 238/321 (74%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QPEGF V GKE VC LKRSLYG KQSPRQW KRFD FM + + S
Sbjct: 937 LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 996
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY K + + S IYLLLYVDDMLIA+KS++EI LK LSSEF+MKDLG A+KILGM
Sbjct: 997 YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1055
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR+S + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+A Q P T E M
Sbjct: 1056 EISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSTDAEIEYM 1114
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG A++WI RY+ GT L
Sbjct: 1115 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCL 1174
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
KF R ++ ++GY +SDYA DLD+ RS+TGYVFT S +SWR+TLQ VALST EAE
Sbjct: 1175 KFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1231
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +E +W+KGL+ EL
Sbjct: 1232 YMAICEACKELIWLKGLYAEL 1252
Score = 77.0 bits (188), Expect(4) = e-134
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KE + +YKARLVA+GY+Q G+DYN+VFSPVV H+SIR L++VA LEL LD
Sbjct: 872 KEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 931
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 932 VKTAFL 937
Score = 77.0 bits (188), Expect(4) = e-134
Identities = 32/69 (46%), Positives = 53/69 (76%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I+L K+Q++H RTKHI+++YH VR ++EEG++++ K+ T +NPADM+TK + KF
Sbjct: 1266 QSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFE 1325
Query: 479 HCLNLISIV 453
C +L+ ++
Sbjct: 1326 LCSSLVGLI 1334
Score = 29.6 bits (65), Expect(4) = e-134
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I+A+ + ++S + LPK +K I CKW++ +K+
Sbjct: 835 ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 873
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 379 bits (973), Expect(4) = e-134
Identities = 200/321 (62%), Positives = 241/321 (75%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QPEGF V GKED VC LKRSLYG KQSPRQWYKRFD FM + + S
Sbjct: 924 LHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSE 983
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
+DSCVY K + S IYLLLYVDDMLIA+KS+ +I LK QLSSEF+MKDLG A+KILGM
Sbjct: 984 FDSCVYI-KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGM 1042
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR S + LSQ+SY+KK+ +RF + D AKPV+ P+A HFKL+A Q T E+ M
Sbjct: 1043 EITRDRNSGLLFLSQQSYIKKVLQRFNMHD-AKPVSTPIAPHFKLSALQCASTDEDVEYM 1101
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY+SA GSLMYAMVC+ PD+S A+S+VSRYM NPG AV+WI RY+ GT D L
Sbjct: 1102 SRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACL 1161
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
KF R ++ +VGY +SD+A DLDK RS+TGYVFT S +SW++TLQP VA ST EAE
Sbjct: 1162 KFGRIDK---GLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAE 1218
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +E+VW+KGLF EL
Sbjct: 1219 YMAIAEACKESVWLKGLFAEL 1239
Score = 72.8 bits (177), Expect(4) = e-134
Identities = 35/66 (53%), Positives = 46/66 (69%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG + R+K RLVAKG++Q G+DYN+VFSPVV H+SIR ++V LEL LD
Sbjct: 859 KEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLD 918
Query: 1655 VKTAYM 1638
VKT ++
Sbjct: 919 VKTTFL 924
Score = 72.8 bits (177), Expect(4) = e-134
Identities = 33/69 (47%), Positives = 50/69 (72%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I L K+Q++H RTKHI+++YH VR IV +G++++ K+ +NPADM+TK + KF
Sbjct: 1253 QSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFE 1312
Query: 479 HCLNLISIV 453
C +L+ IV
Sbjct: 1313 LCSSLVGIV 1321
Score = 29.3 bits (64), Expect(4) = e-134
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I+A+ + ++S + LPK +K + CKW++ +K+
Sbjct: 822 ISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKE 860
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 365 bits (938), Expect(4) = e-133
Identities = 191/321 (59%), Positives = 239/321 (74%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM+QPEGF V GKE+ VC LK+SLYG KQSPRQWYKRFD FM +QK+ SN
Sbjct: 843 LHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSN 902
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY K+ D S IYLLLYVDDMLIA+K + EI LK QLSSEFEMKDLG A+KILGM
Sbjct: 903 YDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGM 961
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI R+R S + LSQK Y++K+ RF + D AK V+ LA HF+L+++ P++ + M
Sbjct: 962 EITRERHSGKLYLSQKCYIEKVLHRFNMHD-AKLVSTLLAAHFRLSSDLCPQSAYDIEYM 1020
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY+SA SLMYAMVC+RPD+S A+SVVSRYM NPG AV+WI RY+ GT L
Sbjct: 1021 SRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACL 1080
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+F R+ +VGY +SD+A DLD+ RS+TGYVFT +SW+++LQ TVALST EAE
Sbjct: 1081 QFGRSSD---GLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAE 1137
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +E +W++GL+ EL
Sbjct: 1138 YMAISEACKEVIWLRGLYTEL 1158
Score = 81.6 bits (200), Expect(4) = e-133
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG + RYKARLVAKGY+Q GID+N+VFSPVV H+SIR LL++VA EL +D
Sbjct: 778 KEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMD 837
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 838 VKTAFL 843
Score = 73.6 bits (179), Expect(4) = e-133
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I L K+Q++H RTKHI++RYH +R ++ EG++++ K+ T +NP DM+TK V KF
Sbjct: 1172 QSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFE 1231
Query: 479 HCLNLISI 456
C +L+ +
Sbjct: 1232 LCSSLVGV 1239
Score = 30.0 bits (66), Expect(4) = e-133
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I A+ D +ES +LPK +K I CKW++ +K+
Sbjct: 741 ITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKE 779
Score = 65.1 bits (157), Expect = 2e-07
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Frame = -2
Query: 2116 VPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKG-LKHGNLYFLQGNTSVSEGI 1940
+P +K++LIS+ LD +G++ + G+LKV LVVMK +K+ NLY L+G T++ +
Sbjct: 271 IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRG-TTILGNV 329
Query: 1939 AAVSDSV-ESDTTKLCHMRL 1883
AAVSDS+ SD T L HMRL
Sbjct: 330 AAVSDSLSNSDATNLWHMRL 349
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 364 bits (935), Expect(4) = e-132
Identities = 191/321 (59%), Positives = 241/321 (75%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM+QPEGF V GKE+ V LK+SLYG KQSPRQWYKRFD FM +QK+ SN
Sbjct: 813 LHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSN 872
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY K+ D S IYLLLYVDDMLIA+K + EI+ LK QLSSEFEMKDLG A+KILGM
Sbjct: 873 YDSCVYL-KVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGM 931
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI R+R S + LSQK Y++K+ +RF + D AKPV+ PLA HF+L+++ P++ + M
Sbjct: 932 EITRERHSGKLYLSQKGYIEKVLRRFNMHD-AKPVSTPLAAHFRLSSDLCPQSDYDIEYM 990
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY S GSLMYAMVC+R D+S A+SVVSRYM NPG V+WI +Y+ GT L
Sbjct: 991 SRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACL 1050
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+F R+ R G +VGY +SD+A DLD+ RS+TGYVFT +SW+++LQ TVALST E E
Sbjct: 1051 QFGRS-RDG--LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVE 1107
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +EA+W++GL+ EL
Sbjct: 1108 YMAISEACKEAIWLRGLYTEL 1128
Score = 78.2 bits (191), Expect(4) = e-132
Identities = 38/66 (57%), Positives = 50/66 (75%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
K+G + RYKARLVAKGY+Q GID+N+VFSPV+ H+SIR LL++VA EL +D
Sbjct: 748 KKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMD 807
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 808 VKTAFL 813
Score = 73.9 bits (180), Expect(4) = e-132
Identities = 32/68 (47%), Positives = 49/68 (72%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I K+Q++H RTKHI+VRYH +R ++ EG++++ K+ T +NPADM+TK V KF
Sbjct: 1142 QSAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFE 1201
Query: 479 HCLNLISI 456
C +L+ +
Sbjct: 1202 LCSSLVGV 1209
Score = 31.2 bits (69), Expect(4) = e-132
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -2
Query: 1954 VSEG----IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKK 1829
VS+G I A+ D +ES ++LPK +K I CKW++ +K
Sbjct: 703 VSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 748
>ref|XP_010692517.1| PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp.
vulgaris]
Length = 2676
Score = 365 bits (938), Expect(4) = e-131
Identities = 187/330 (56%), Positives = 243/330 (73%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHGDLEE IYMKQP+GFEV GKE+ VC L +SLYG KQSPRQWY+RFD FM ++T S+
Sbjct: 786 LHGDLEEEIYMKQPKGFEVEGKEEHVCRLVKSLYGLKQSPRQWYRRFDSFMLAHEFTRSS 845
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY+K+L SFIYLLLYVDDML+A K +E+ LK L+S F+MK+LG+A+KILGM
Sbjct: 846 YDSCVYYKELVSGSFIYLLLYVDDMLVACKHLIEVNNLKKLLNSGFDMKNLGEAKKILGM 905
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR + LSQ+ Y++K+ +RF +++ AKPV+ PL HFKL+ E P++ EE+R M
Sbjct: 906 EIWRDRSKGVLYLSQRRYIEKVLERFSMNN-AKPVSTPLGSHFKLSKELCPQSEEEERAM 964
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
A IPYTSA GS+MYAMVC+RPDI+QAVS++SRYM PG A+KW+LRY+ GT V L
Sbjct: 965 AHIPYTSAVGSVMYAMVCSRPDIAQAVSIMSRYMSRPGKGHWEALKWLLRYLKGTSHVCL 1024
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+F ++ V+GY +SDY DLD +S +GYVFT +SW+S LQ VALST EAE
Sbjct: 1025 EFGQDAN---GVIGYYDSDYGGDLDDRKSTSGYVFTLGGTAVSWQSLLQDVVALSTTEAE 1081
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
++A E +EA +KGL E+ +++SV
Sbjct: 1082 FIAITESFKEAKRLKGLVGEISSCSKEVSV 1111
Score = 75.1 bits (183), Expect(4) = e-131
Identities = 37/66 (56%), Positives = 50/66 (75%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG+P + YKAR+VA+ + Q +G+D++EVF PVV H+SIR+LLAL A LEL LD
Sbjct: 721 KEGTPDSGGPIYKARVVARRFTQVEGVDFHEVFPPVVKHSSIRVLLALEAMEDLELHQLD 780
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 781 VKTAFL 786
Score = 70.1 bits (170), Expect(4) = e-131
Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = -1
Query: 659 QSNIHLAKNQ-VYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKF 483
QS IHL KNQ +H RTKHI+V+Y+ +R ++++ E+ L K+ T NP+DMLTK + KF
Sbjct: 1116 QSAIHLDKNQNTFHRRTKHIDVKYNFIRNVIDQKELTLMKIRTEENPSDMLTKPLPTTKF 1175
Query: 482 RHCLNLI 462
C+NL+
Sbjct: 1176 ILCVNLV 1182
Score = 30.8 bits (68), Expect(4) = e-131
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 1876 PKGEKAIGCKWVYTKKD 1826
PK +K +GCKWVY +K+
Sbjct: 706 PKKKKIVGCKWVYKRKE 722
Score = 73.9 bits (180), Expect = 5e-10
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 2116 VPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKHGNLYFLQGNTSVSEGIA 1937
VPEMKKNLIS+G LD+ G + +GGVL V LV+MKG+K G+LY LQG S+ G A
Sbjct: 354 VPEMKKNLISLGTLDNNGCKYIAEGGVLNVIRGALVLMKGIKRGSLYVLQG--SMVSGSA 411
Query: 1936 AVS-DSVESDTTKLCHMRL 1883
VS ++ D TKL H+RL
Sbjct: 412 NVSTGTMSDDDTKLWHLRL 430
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 348 bits (892), Expect(4) = e-128
Identities = 181/330 (54%), Positives = 234/330 (70%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHGDLEE IYM+QPEGFEVAGK+ VC L +SLYG KQ+PRQWY +FD FMK+Q Y +
Sbjct: 928 LHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTY 987
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
D CVYFK+ + +FI LLLYVDDMLI K + I LK LS F+MKDLG A++ILGM
Sbjct: 988 SDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGM 1047
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
+I R+R S + LSQ+ Y++++ +RF + + AKPV+ PLA H KL+ + P TVEE+ M
Sbjct: 1048 KIVRERTSRKLWLSQEKYIERVLERFNMKN-AKPVSTPLAGHLKLSKKMCPTTVEEKGNM 1106
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
A++PY+SA GSLMYAMVCTRPDI+ AV VVSR++ NPG AVKWILRY+ GT L
Sbjct: 1107 AKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL 1166
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
F ++ + GY ++D A D+D +S TGY+FT G ISW+S LQ VALST EAE
Sbjct: 1167 CFGGSDPI---LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAE 1223
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
Y+AA E +E +W+K +ELG+ Q++ V
Sbjct: 1224 YIAATETGKEMIWLKRFLQELGLHQKEYVV 1253
Score = 79.0 bits (193), Expect(4) = e-128
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I L+KN +YHARTKHI+VRYH +R++V++ +++ K+ T NPADMLTKVV KF
Sbjct: 1258 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317
Query: 479 HCLNLISI 456
C L+ +
Sbjct: 1318 LCKELVGM 1325
Score = 75.1 bits (183), Expect(4) = e-128
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = -1
Query: 1808 VRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLDVKTAYM 1638
VRYKARLV KG+ Q+KGID++E+FSPVV TSIR +L+L A LE+ LDVKTA++
Sbjct: 872 VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 928
Score = 31.6 bits (70), Expect(4) = e-128
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 1936 AVSDSVESDTTKLCHMRLELPKGEKAIGCKWVY-TKKD 1826
A+ + +ES + +ELPKG++ + CKWV+ KKD
Sbjct: 829 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKD 866
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 369 bits (947), Expect(4) = e-126
Identities = 194/321 (60%), Positives = 237/321 (73%), Gaps = 3/321 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QPEGF V GKE VC LKRSLYG KQSPRQW KRFD FM + + S
Sbjct: 935 LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVY K + + S IYLLLYVDDMLIA+KS++EI LK LSSEF+MKDLG A+KILGM
Sbjct: 995 YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1053
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR+S + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+A Q P E M
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSIDAEIEYM 1112
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG AV+WI RY+ GT L
Sbjct: 1113 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCL 1172
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
KF R ++ ++GY +SDYA DLD+ RS+TGYVFT S +SWR+TLQ VALST EAE
Sbjct: 1173 KFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229
Query: 753 YMAAVEGIREAVWMKGLFEEL 691
YMA E +E +W+KGL+ EL
Sbjct: 1230 YMAICEACKELIWLKGLYAEL 1250
Score = 81.6 bits (200), Expect(4) = e-126
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
KEG S+ +YKARLVA+GY+Q G+DYN+VFSPVV H+SIR L++VA LEL LD
Sbjct: 870 KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 929
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 930 VKTAFL 935
Score = 45.4 bits (106), Expect(4) = e-126
Identities = 17/34 (50%), Positives = 28/34 (82%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGE 558
+S I+L K+Q++H RTKHI+++YH VR ++EE +
Sbjct: 1264 ESAIYLTKDQMFHERTKHIDIKYHFVRDVIEEDD 1297
Score = 29.6 bits (65), Expect(4) = e-126
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 1942 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1826
I+A+ + ++S + LPK +K I CKW++ +K+
Sbjct: 833 ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 871
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 335 bits (860), Expect(4) = e-126
Identities = 170/331 (51%), Positives = 229/331 (69%), Gaps = 3/331 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+L+E I M QPEG+E ++VC LK+SLYG KQSPRQW +RFD FM Y S
Sbjct: 941 LHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSK 1000
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
Y+ CVY ++L D S+IYLLLYVDDMLIAS+++ +IQ LK L+ EFEMKDLG ARKILGM
Sbjct: 1001 YNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGM 1060
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI R+R ++LSQ Y+ + + FG+ D++K PL HFKL A + M
Sbjct: 1061 EITRNREQGILDLSQSEYVAGVLRAFGM-DQSKVSQTPLGAHFKLRAANEKTLARDAEYM 1119
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+PY +A GS+MY+M+ +RPD++ V VVSR+M P AVKW++RY+ GT D L
Sbjct: 1120 KLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCL 1179
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+F ++++ ++ GYC+SDYA DLD+ RSITG+VFTA ISW+S LQ VALST EAE
Sbjct: 1180 RFKKDDK--FEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAE 1237
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSVL 661
YMA E ++EA+W++GL E+G +Q+ + V+
Sbjct: 1238 YMALAEAVKEAIWLRGLAAEMGFEQDAVEVM 1268
Score = 87.4 bits (215), Expect(4) = e-126
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
K G P RYKARLVAKG++QR+GIDY E+FSPVV H SIR LL++V QF +EL LD
Sbjct: 876 KAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLD 935
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 936 VKTAFL 941
Score = 72.8 bits (177), Expect(4) = e-126
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I L+KN V+H RTKHI+VRYH +R+ + +GEIQ+ K+ T NPAD+ TK V K +
Sbjct: 1272 QSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQ 1331
Query: 479 HCLNLISI 456
L L+ +
Sbjct: 1332 EALKLLRV 1339
Score = 30.0 bits (66), Expect(4) = e-126
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 1885 LELPKGEKAIGCKWVYTKK 1829
++ P+G++ IGCKW++ +K
Sbjct: 858 IDKPEGKRVIGCKWIFKRK 876
Score = 63.5 bits (153), Expect = 7e-07
Identities = 37/78 (47%), Positives = 45/78 (57%)
Frame = -2
Query: 2116 VPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKHGNLYFLQGNTSVSEGIA 1937
+PEM KNLIS+G L+ +G K G+L + N+L V+ G K LYFLQG T E A
Sbjct: 374 IPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFLQGTTLAGE--A 431
Query: 1936 AVSDSVESDTTKLCHMRL 1883
V D E D T L H RL
Sbjct: 432 NVIDK-EKDETSLWHSRL 448
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 365 bits (936), Expect(4) = e-126
Identities = 189/327 (57%), Positives = 234/327 (71%), Gaps = 3/327 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYMKQPEGF + K D VC LK+SLYG KQSPRQWYKRFD FM + ++ +
Sbjct: 1233 LHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQ 1292
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
YDSCVYFK L D SFIYLLLYVDDMLIA+K+ EI LK LSSEFEMKDLG A+KILGM
Sbjct: 1293 YDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGM 1352
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
EI RDR + + +SQ+ Y++KL + F + D +KPV+ PLA+HFK + P T EE M
Sbjct: 1353 EIWRDRDAGLLYVSQQKYIEKLMQAFHM-DHSKPVSTPLAQHFKFDHSTLPSTDEEVEYM 1411
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGTL---AVKWILRYI*GTVDVGL 934
+PY+S GSLMYAMVCTRPD++ AVSVVSR+M NPG AVKWI+RY+ G+ V L
Sbjct: 1412 KSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCL 1471
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+ N +VG+ +SD+ DL K RS+T Y+FT ISWR++LQPTVALST EAE
Sbjct: 1472 VYG-NGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAE 1530
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEK 673
YM+ EG++E +W+ G LG+ K
Sbjct: 1531 YMSLTEGVKEGMWLNGFLGSLGLNLSK 1557
Score = 77.8 bits (190), Expect(4) = e-126
Identities = 38/65 (58%), Positives = 47/65 (72%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS + LAKN VYH RTKHI+VR + +R ++EE +EKV T NPADMLTK +T EKF+
Sbjct: 1565 QSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTKPITTEKFK 1624
Query: 479 HCLNL 465
H L L
Sbjct: 1625 HSLGL 1629
Score = 55.8 bits (133), Expect(4) = e-126
Identities = 33/66 (50%), Positives = 41/66 (62%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
K+G +YK+RLVAK VFSPVV H SIR+LLA+V+ F LEL LD
Sbjct: 1180 KDGISEDEPPKYKSRLVAK------------VFSPVVKHKSIRVLLAMVSVFNLELDQLD 1227
Query: 1655 VKTAYM 1638
VKTA++
Sbjct: 1228 VKTAFL 1233
Score = 26.9 bits (58), Expect(4) = e-126
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 1879 LPKGEKAIGCKWVYTKKD 1826
LP+G K + CKW++ KD
Sbjct: 1164 LPEGVKPVDCKWLFKIKD 1181
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 352 bits (903), Expect(3) = e-125
Identities = 184/330 (55%), Positives = 232/330 (70%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QPEGF GKE+ VC L +SLYG KQ+PR WYKRFD F+ + Y +
Sbjct: 909 LHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLS 968
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
D C Y+K+ +D FI LLLYVDDML+A ++ IQ LK QL+ EFEMKDLG A KILGM
Sbjct: 969 SDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGM 1028
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
+I RDR + I LSQK+YLKK+ +RF + D K ++ PL +FKL++ P E++ M
Sbjct: 1029 QIHRDRNNRKIWLSQKNYLKKILRRFNMQD-CKSISTPLPVNFKLSSSMCPSNEAERKEM 1087
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPG---TLAVKWILRYI*GTVDVGL 934
+ +PY SA GSLM+AM+CTRPDI+QAV VSRYM NPG +AVK ILRYI GT +V L
Sbjct: 1088 SRVPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVAL 1147
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+ +E T V GY +SD+A DLDK +S TGYVFT +SW S LQ VALST EAE
Sbjct: 1148 CYGGSEFT---VRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAE 1204
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
YMAA + +EA+W++ L EELG +Q+K+ V
Sbjct: 1205 YMAATQACKEAIWIQRLLEELGHKQQKIPV 1234
Score = 77.8 bits (190), Expect(3) = e-125
Identities = 40/75 (53%), Positives = 54/75 (72%)
Frame = -1
Query: 1862 GNWMQVGIYKEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQ 1683
GN I ++G+ RY+ARLV KGYAQ++GID+NE+FSPVV T++RI+LA+ A
Sbjct: 837 GNKWVYKIKRDGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCAT 894
Query: 1682 FGLELVLLDVKTAYM 1638
F L L LDVKTA++
Sbjct: 895 FDLHLEQLDVKTAFL 909
Score = 72.0 bits (175), Expect(3) = e-125
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKF 483
QS +H+A+N +H+RTKHI V+YH VR++VE+G + L+K+ T N AD+LTK + +KF
Sbjct: 1239 QSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKSINTDKF 1297
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 345 bits (884), Expect(4) = e-125
Identities = 168/330 (50%), Positives = 237/330 (71%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHGDLEE +YM+QPEGF E++VC LK+SLYG KQSPRQW KRFD+FM +Q++ S
Sbjct: 957 LHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSE 1016
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
+D+CVY K + + FIYLLLYVDDMLIA S+ EI +K QLS+EFEMKD+G A +ILG+
Sbjct: 1017 HDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGI 1076
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
+I RDR+ + LSQ+ Y++K+ RF + AK P+ HFKL A + + +
Sbjct: 1077 DIYRDRKGGVLKLSQEIYIRKVLDRFNMSG-AKMTNAPVGAHFKLAAVREEDECVDTDV- 1134
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGTL---AVKWILRYI*GTVDVGL 934
+PY+SA GS+MYAM+ TRPD++ A+ ++SRYM PG++ AVKW++RY+ G D+ L
Sbjct: 1135 --VPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNL 1192
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
F++ + V GYC+S+YA DLD+ RSI+GYVFT +SW+++LQP VA+ST EAE
Sbjct: 1193 VFTKEK--DFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAE 1250
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
Y+A E +EA+W+KGL +++G+QQ+K+ +
Sbjct: 1251 YIALAEAAKEAMWIKGLLQDMGMQQDKVKI 1280
Score = 81.6 bits (200), Expect(4) = e-125
Identities = 38/66 (57%), Positives = 48/66 (72%)
Frame = -1
Query: 1835 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1656
K G P R+KARLVAKGY QR+G+DY E+F+PVV H SIRIL++LV LEL +D
Sbjct: 892 KSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMD 951
Query: 1655 VKTAYM 1638
VKT ++
Sbjct: 952 VKTTFL 957
Score = 71.2 bits (173), Expect(4) = e-125
Identities = 31/69 (44%), Positives = 48/69 (69%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS I L+KN VYH RTKHI+VR++ +R +VE G++ + K+ T+ NP D LTK + KF+
Sbjct: 1285 QSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFK 1344
Query: 479 HCLNLISIV 453
L ++ ++
Sbjct: 1345 SALGVLKLM 1353
Score = 25.4 bits (54), Expect(4) = e-125
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 1885 LELPKGEKAIGCKWVYTKK 1829
++ PK K IGC+W++ K
Sbjct: 874 VDKPKDRKIIGCRWLFKLK 892
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 351 bits (900), Expect(3) = e-125
Identities = 184/330 (55%), Positives = 232/330 (70%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHG+LEE IYM QPEGF GKE+ VC L +SLYG KQ+PR WYKRFD F+ + Y +
Sbjct: 909 LHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLS 968
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
D C Y+K+ +D FI LLLYVDDML+A ++ IQ LK QL+ EFEMKDLG A KILGM
Sbjct: 969 SDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGM 1028
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
+I RDR + I LSQK+YLKK+ +RF + D K ++ L +FKL++ P E++ M
Sbjct: 1029 QIHRDRNNMKIWLSQKNYLKKILRRFNMQD-CKSISTSLPVNFKLSSSMCPSNEAERKEM 1087
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPG---TLAVKWILRYI*GTVDVGL 934
+ +PY SA GSLM+AM+CTRPDI+QAV VVSRYM NPG +AVK ILRYI GT DV L
Sbjct: 1088 SRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVAL 1147
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+ +E T V GY +SD+A DLDK +S TGYVFT +SW S LQ VALST EAE
Sbjct: 1148 CYGGSEFT---VRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAE 1204
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
YMAA + ++A+W++ L EELG +Q+K+ V
Sbjct: 1205 YMAATQACKKAIWIQRLLEELGHKQQKILV 1234
Score = 77.8 bits (190), Expect(3) = e-125
Identities = 40/75 (53%), Positives = 54/75 (72%)
Frame = -1
Query: 1862 GNWMQVGIYKEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQ 1683
GN I ++G+ RY+ARLV KGYAQ++GID+NE+FSPVV T++RI+LA+ A
Sbjct: 837 GNKWVYKIKRDGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCAT 894
Query: 1682 FGLELVLLDVKTAYM 1638
F L L LDVKTA++
Sbjct: 895 FDLHLEQLDVKTAFL 909
Score = 72.0 bits (175), Expect(3) = e-125
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKF 483
QS +H+A+N +H+RTKHI V+YH VR++VE+G + L+K+ T N AD+LTK + +KF
Sbjct: 1239 QSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKF 1297
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 337 bits (863), Expect(4) = e-124
Identities = 179/330 (54%), Positives = 224/330 (67%), Gaps = 3/330 (0%)
Frame = -3
Query: 1644 LHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGFKQSPRQWYKRFDKFMKTQKYTSSN 1465
LHGDLEE IYM QPEGFE ++ VC L +SLYG KQ+PR WYKRFD F+ Y N
Sbjct: 898 LHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLN 957
Query: 1464 YDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQ*LKNQLSSEFEMKDLGKARKILGM 1285
D C YFK+ ++F+ LLLYVDDML+A ++ I LK QL+ EFEMKDLG A KILGM
Sbjct: 958 ADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGM 1017
Query: 1284 EIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNAEQSPKTVEEQRLM 1105
+I RDR + I LSQK+YLKK+ RF + D K ++ PL + K+++ SP E + M
Sbjct: 1018 QIHRDRGNRKIWLSQKNYLKKILSRFSMQD-CKSISTPLPINLKVSSSMSPSNEEGRMEM 1076
Query: 1104 AEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVGL 934
+ +PY SA GSLM+AM+CTRPDI+QAV VVSRYM NPG VK ILRYI GT DV L
Sbjct: 1077 SRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVAL 1136
Query: 933 KFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEAE 754
+ ++ + GY +SDYA DLDK +S TGYVF G +SW S LQ VA ST EAE
Sbjct: 1137 CYGGSDFI---INGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAE 1193
Query: 753 YMAAVEGIREAVWMKGLFEELGIQQEKLSV 664
Y+AA + +EA+W+K L EELG +QE +S+
Sbjct: 1194 YVAATQASKEAIWLKMLLEELGHKQEFVSL 1223
Score = 77.0 bits (188), Expect(4) = e-124
Identities = 35/56 (62%), Positives = 47/56 (83%)
Frame = -1
Query: 1805 RYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLDVKTAYM 1638
RY+ARLV KGYAQ++GID+NE+FSPVV T++R++LA+ A F L L LDVKTA++
Sbjct: 843 RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFL 898
Score = 75.9 bits (185), Expect(4) = e-124
Identities = 32/69 (46%), Positives = 50/69 (72%)
Frame = -1
Query: 659 QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 480
QS +HLA+N +H+RTKHI V+YH +R+ V+EG + L+K+ TA+N AD LTK++ +KF
Sbjct: 1228 QSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDKFT 1287
Query: 479 HCLNLISIV 453
C + ++
Sbjct: 1288 WCRSSCGLI 1296
Score = 29.3 bits (64), Expect(4) = e-124
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 1963 NTSVSEGIAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKK 1829
++ VS+ AA+ + +E+ + LP+G K IG KWV+ K
Sbjct: 790 SSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIK 834