BLASTX nr result
ID: Papaver29_contig00016909
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver29_contig00016909
(2591 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 184 3e-72
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 164 1e-70
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 169 2e-68
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 169 6e-67
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 179 1e-63
emb|CBI20118.3| unnamed protein product [Vitis vinifera] 171 2e-63
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 167 4e-63
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 174 6e-62
emb|CDF77009.1| hypothetical transposable element-related protei... 159 1e-61
gb|AHL77759.1| polyprotein [Prunus persica] 172 5e-59
emb|CAN81793.1| hypothetical protein VITISV_020571 [Vitis vinifera] 184 5e-59
emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera] 170 2e-58
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi] 167 3e-58
ref|XP_011624299.1| PREDICTED: retrovirus-related Pol polyprotei... 159 7e-58
emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera] 153 3e-57
emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera] 153 2e-56
gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subc... 152 8e-53
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 172 1e-52
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D... 172 3e-52
gb|AAD12997.1| gag-pol polyprotein [Zea mays] 145 4e-52
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 184 bits (467), Expect(3) = 3e-72
Identities = 91/227 (40%), Positives = 139/227 (61%), Gaps = 2/227 (0%)
Frame = -1
Query: 806 PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 627
P + QN++S CL +GY+ R + S+ F V+G+Y LN ++S +
Sbjct: 367 PTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINT 426
Query: 626 SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKID-FNICEPCVMGKM 450
E S D + + +WH RLGH+NK ++ + GL+H + F CE C++GKM
Sbjct: 427 ------ERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKM 480
Query: 449 SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 273
++ PF G + R++DLL ++H+D+CGP++ G YFITFTDD+SR+GY+YL+ KS +
Sbjct: 481 TKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSES 540
Query: 272 LDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
+ F ++NEV+N LG+ IK LR DRGGEY S+ FG+ K+ GI+ Q
Sbjct: 541 FEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQ 587
Score = 79.7 bits (195), Expect(3) = 3e-72
Identities = 79/343 (23%), Positives = 131/343 (38%), Gaps = 13/343 (3%)
Frame = -2
Query: 1840 ECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDE-PDNPNPAVGRCYERFLEDDKIDRS 1664
E LNG+NF W R +R +L E+ EYV++VP P+E P+N R +E+ D
Sbjct: 19 EKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFEKHTNDALDISC 78
Query: 1663 TMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTT------RMKEI 1502
ML M P+L+ YE +A T G + Q +FNT+ R+ E
Sbjct: 79 LMLATMSPELQKQYES-------SDAHTTIQGLRGMFENQARDERFNTSKSLFACRLVEG 131
Query: 1501 ESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITL 1322
V H I+M + + +G P+ + +L SLP S E ++ +M+ D + L
Sbjct: 132 NPVSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAEL 191
Query: 1321 PMLLGVEAQRREKRG------ESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXX 1160
+L + +K G +++ +
Sbjct: 192 HGMLKTVEESIQKNGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASASNAKKGKKGSAAS 251
Query: 1159 NITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSR 980
+ C+ C++ GH+ NC + V + L T++W D S
Sbjct: 252 DAVCFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFD-TGSVA 310
Query: 979 HVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFP 851
H KS + ++ GE + +GN + + V L P
Sbjct: 311 HSCKSLQGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLP 353
Score = 60.5 bits (145), Expect(3) = 3e-72
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -3
Query: 123 PDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
P TPQ NGV+ERRNRTLLDM RSM+S S+L FWG AL T
Sbjct: 591 PGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALET 631
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 164 bits (416), Expect(3) = 1e-70
Identities = 88/235 (37%), Positives = 141/235 (60%), Gaps = 5/235 (2%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 642
DVL P M++NL+S+ C+ Y + EV + G + + + +Y L +
Sbjct: 360 DVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRENNLYKLRPTRA-- 417
Query: 641 NKVVNSSAY-FYECSNSLD--FSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKID-FNIC 474
N V+N+ + E N S++ +WH+RLGH+N +++ + SG++++++ + C
Sbjct: 418 NVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPC 477
Query: 473 EPCVMGKMSRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVY 297
E C+ GKM+++ F GK +R+ L+++HSD+CGP+NVK G YFI+F DD+SR+G+VY
Sbjct: 478 ESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVY 537
Query: 296 LISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
L+ KS + + F YK EVEN++G+ IK LR DRGGEY F D+ GI Q
Sbjct: 538 LLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQ 592
Score = 90.5 bits (223), Expect(3) = 1e-70
Identities = 87/363 (23%), Positives = 147/363 (40%), Gaps = 18/363 (4%)
Frame = -2
Query: 1855 ELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPD-NPNPAVGRCYERFLEDD 1679
+L +E LNG N+S WK + IL + + +V+ P P N N V Y+R+++ +
Sbjct: 7 QLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWVKAN 66
Query: 1678 KIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIE 1499
R +L M L ++ K + +++ + +G+ S + I T RMKE
Sbjct: 67 DKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGT 126
Query: 1498 SVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLP 1319
SV +H + M M G PI + QVS +L SLP+S +++ + N+ TL
Sbjct: 127 SVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLL 186
Query: 1318 MLL------------GVEA-----QRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXX 1190
L VEA +R+ RG SS + V A
Sbjct: 187 NELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVK 246
Query: 1189 XXXXXXXXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNA 1010
C+ C Q GH+ NCP+ +V E+ L +CD +
Sbjct: 247 KNADKG------KCFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDLLVVETCLVECDAST 300
Query: 1009 WWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVP 830
W +D ++ H+ S + K++K GE + +G + ++ L F + ++
Sbjct: 301 WILD-SGATNHICFSFQETSSWKKLKEGEITLKVGTGEVVSAEAVGDLTLFFQDRYLILK 359
Query: 829 TIL 821
+L
Sbjct: 360 DVL 362
Score = 63.9 bits (154), Expect(3) = 1e-70
Identities = 29/46 (63%), Positives = 36/46 (78%)
Frame = -3
Query: 138 SSIFMPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
S + P TPQ+NGV+ERRNRTLLDM RSM+S+++L FWG AL T
Sbjct: 591 SQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALET 636
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 169 bits (428), Expect(3) = 2e-68
Identities = 86/227 (37%), Positives = 139/227 (61%), Gaps = 2/227 (0%)
Frame = -1
Query: 806 PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 627
P M +N++S CL +GY+ I S+ + ++G++ LN D + N
Sbjct: 455 PAMSRNIISASCLMTEGYKFIIEDHGCSIFLNDMFYGYAPVLNGLFILNL---DDAPIFN 511
Query: 626 SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKID-FNICEPCVMGKM 450
+A +N + + +WH RLGH+++ ++ + G+++ ++ F CE C++GKM
Sbjct: 512 INAKRLRPNN---MNSTFIWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKM 568
Query: 449 SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 273
++ PF G+ R++DLL +IH+D+CGP++ G YFITFTDDYSR+GY+YL+ KS +
Sbjct: 569 TKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSES 628
Query: 272 LDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
+ F ++NEV+NQLG+ IK LR DRGGE+ S+ FG+ K GI+ Q
Sbjct: 629 FEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEFGNHLKQCGIVPQ 675
Score = 85.9 bits (211), Expect(3) = 2e-68
Identities = 84/361 (23%), Positives = 140/361 (38%), Gaps = 16/361 (4%)
Frame = -2
Query: 1885 CSMASKAVS------HELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEP-DN 1727
C MA AV + K E LNG+NF+ W R +R +L +K E+V++ PIPD P DN
Sbjct: 84 CIMAPIAVPTSSFALRSILKKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPADN 143
Query: 1726 PNPAVGRCYERFLEDDKIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYI 1547
+ Y++ ++ ML M+ DL+ +E + M A+ + Q++T
Sbjct: 144 AAATLKSAYKKACDESLDVSCLMLAAMNSDLQKQFENIEAYD-MIVALKGMFETQARTKR 202
Query: 1546 QLLIGKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVV 1367
+ + ++ E V H I+M + + +G P+ + +L SLP S +
Sbjct: 203 FEISKNLFSCKLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFI 262
Query: 1366 VAINMSGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXX 1187
+ +M+G D N+ L MLL A+ K+ S V + +
Sbjct: 263 LNFHMNGLDKNLTELHMLLKT-AEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLD 321
Query: 1186 XXXXXXXXXNI--------TCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCV-VSESL 1034
C+ C++ GH+ NC + + V + L
Sbjct: 322 GIQTNKPKLKTKSGPTQENECFYCKEPGHWKRNCKKYLADLKKNGGTKPSTSGINVIDVL 381
Query: 1033 LDDCDTNAWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSF 854
L D N+W D S H+ S + + GE + +GN L + L
Sbjct: 382 LADSSVNSWVFD-TGSVAHICNSMQSLTKNRRVARGEMDLRVGNKAKVAALSAETLPLVL 440
Query: 853 P 851
P
Sbjct: 441 P 441
Score = 56.6 bits (135), Expect(3) = 2e-68
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = -3
Query: 123 PDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
P TPQ NGV+ER NRTLLDM R M+S S+L +FWG AL T
Sbjct: 679 PSTPQWNGVSERCNRTLLDMVRLMMSQSDLPLYFWGYALET 719
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 169 bits (429), Expect(3) = 6e-67
Identities = 88/244 (36%), Positives = 144/244 (59%), Gaps = 11/244 (4%)
Frame = -1
Query: 830 YYTDVLVAPNMRQNLVSVPCLDNKGYEV---RIRSGEVSVRKHGRILF*GTKVDGMYHLN 660
+ +VL P++R+NL+ + L GY V V ++ +++ G+ +D +Y L
Sbjct: 670 FLKNVLYVPSIRRNLIPISSLSKNGYSVCFNEFYDDSVVIKFREQMICSGSLIDSLYIL- 728
Query: 659 QKSSDFNKVVNSSAYFYEC------SNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHK 498
K + ++ NS ++ ++ S + +WH+RLGH+N D++S + G +
Sbjct: 729 -KVTPELQLTNSEVNNFDIVAPLKRKRPIELSYTYLWHLRLGHINLDRISLLVKDGPLSS 787
Query: 497 IKID-FNICEPCVMGKMSRKPFG-KAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTD 324
+K++ CE C+ GKM+++PF K R+ND+L++IHSD+CGP++V+ G YF+TFTD
Sbjct: 788 LKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTD 847
Query: 323 DYSRFGYVYLISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHG 144
DYSR+GY+YL+ +KS + F ++K E+E + G+ IK LR D GGEY S F F G
Sbjct: 848 DYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLRSDHGGEYISREFITFLSEQG 907
Query: 143 IIHQ 132
I Q
Sbjct: 908 ITSQ 911
Score = 78.6 bits (192), Expect(3) = 6e-67
Identities = 72/347 (20%), Positives = 143/347 (41%), Gaps = 7/347 (2%)
Frame = -2
Query: 1834 LNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEP-DNPNPAVGRCYERFLEDDKIDRSTM 1658
L G N+ WKR + +L E+ ++V+ ++P + + ++++++ D++ R +
Sbjct: 337 LEGPNYVDWKRNLDILLTAEEYKFVLSEVCLEKPGEGATQDQIKAHQKWVKADEMARCYI 396
Query: 1657 LTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVVDHCI 1478
L M L+ ++ + E + + +G+Q+ Q + + T++M+E V H +
Sbjct: 397 LASMSNVLQHQHQKMDTAYDILENLKEMFGDQTSAARQNTLREILTSKMEEGTQVRTHVL 456
Query: 1477 RMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLLG--V 1304
+M + + +G + Q+ +L++LP S + + NM+ D TL LL V
Sbjct: 457 KMMSLLNDMEVLGAEVDKATQIEMVLNTLPPSFQQFRLNYNMNKMD---FTLSKLLNELV 513
Query: 1303 EAQRREKRGES----SPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNITCYQCR 1136
AQ K+G + + V V C+ C+
Sbjct: 514 AAQTIIKQGAAPVVLNIERVFSSVQKKGKKKKNVKPNNNGAANGVNGVVKKPKGKCFHCK 573
Query: 1135 QKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVEKSRDC 956
Q H+ CP +V E+ L T+ W +D ++ HV S
Sbjct: 574 QPSHWKLQCPTWLAKKKQGTSPFH---LLVVETCLAVLTTHQWCVDLGATN-HVCNSLQG 629
Query: 955 FVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVPTILMY 815
F +++ GE +++GN + VL + N+ L+F L ++Y
Sbjct: 630 FQETRQLSKGEVNIFLGNGSEVAVLAVGNIALNFKNNRTLFLKNVLY 676
Score = 58.2 bits (139), Expect(3) = 6e-67
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = -3
Query: 138 SSIFMPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
S + P PQ+NGVAERRNRTL++M RSM+S+S+L WG A+ T
Sbjct: 910 SQLSAPGMPQQNGVAERRNRTLMEMVRSMMSYSDLPISLWGHAIET 955
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 179 bits (453), Expect(3) = 1e-63
Identities = 105/235 (44%), Positives = 140/235 (59%), Gaps = 4/235 (1%)
Frame = -1
Query: 824 TDVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKS-- 651
T+VL P +R+NLVS L+N G+ + S +V + K G + G DGM+ LN +
Sbjct: 394 TNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGKGYMSDGMWKLNVMTII 453
Query: 650 -SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKIDFNI- 477
S+ NK ++S Y E SN +WH RLGHVN D L + + I +I+ N
Sbjct: 454 KSNMNKA-STSTYMLESSN--------LWHGRLGHVNYDTLRRLINLNHIPTFQINSNHK 504
Query: 476 CEPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVY 297
CE CV K++R F R+ + LD+IHSDIC V+T G YFITF DD +++ YVY
Sbjct: 505 CETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVY 564
Query: 296 LISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
L+ K A++ F+ YK EVENQL +KIKVLR DRGGEY+S F D C HGIIH+
Sbjct: 565 LLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFV-DICAQHGIIHE 618
Score = 67.4 bits (163), Expect(3) = 1e-63
Identities = 73/361 (20%), Positives = 144/361 (39%), Gaps = 17/361 (4%)
Frame = -2
Query: 1846 KTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPD-EPDNPNPAVGRCYERFLEDDKID 1670
K E +G NF W++++ L + + P + D + V + + D +
Sbjct: 40 KPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLC 99
Query: 1669 RSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVV 1490
R+ ++ + L +Y + K ++E++ + Y + + ++G+F +M + ++VV
Sbjct: 100 RNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVV 159
Query: 1489 DHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLL 1310
+ +I I A G + + QV+ ++ LP + + + +++++ L + L
Sbjct: 160 SQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRL 219
Query: 1309 GVEAQRR--EKRG-----ESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNIT 1151
+E R EK+G E+ + V +
Sbjct: 220 RIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGK 279
Query: 1150 CYQCRQKGHY*SNC-------PEXXXXXXXXXXXXKDI--VCVVSESLLDDCDTNAWWID 998
C+ C ++GH +C P+ DI VVSE L + WWID
Sbjct: 280 CFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWID 339
Query: 997 YYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVPTILM 818
++RHV + F + I+ GE +V+MGN+ ++ G V L L T ++
Sbjct: 340 -TGATRHVCSDKKMFSTFEPIENGE-KVFMGNSATSEIKGQGKVILKMTSGKELTLTNVL 397
Query: 817 Y 815
Y
Sbjct: 398 Y 398
Score = 49.3 bits (116), Expect(3) = 1e-63
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -3
Query: 123 PDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
P +PQ NGVAER+NRTL +M +M+ S L + WGEA+ T
Sbjct: 622 PYSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILT 662
>emb|CBI20118.3| unnamed protein product [Vitis vinifera]
Length = 1354
Score = 171 bits (434), Expect(3) = 2e-63
Identities = 87/236 (36%), Positives = 139/236 (58%), Gaps = 10/236 (4%)
Frame = -1
Query: 806 PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 627
P++ +NLVS+ LD GY V SG++S+ + + G DG+Y ++ ++
Sbjct: 728 PSISRNLVSLSKLDATGYSVLFSSGQLSLMLNSVTIGSGILCDGLYKISLNHEFAQALIT 787
Query: 626 SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI-DFNICEPCVMGKM 450
+ ++ + S++WH RLGH++++++ + G++ + DF++C C+ GK
Sbjct: 788 LHSNVGSKRGLINENSSILWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQ 847
Query: 449 SRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYAL 270
++ A RSN+LL+IIH+DICGPL++ G YFITF DD SR+GYVYL+ +KS A+
Sbjct: 848 TKHTKKGATRSNELLEIIHTDICGPLSIPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAI 907
Query: 269 DIFISYKNEVENQLGRKIKVLRCDRGGEYKSEF---------FGDFCKNHGIIHQF 129
DIF + EVE QL +KIK++R D+GGEY + F F + HGI Q+
Sbjct: 908 DIFEMFITEVERQLDKKIKIVRSDQGGEYYGRYDESGQNPGPFAKFLEKHGIRAQY 963
Score = 62.0 bits (149), Expect(3) = 2e-63
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = -3
Query: 126 MPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
MP TPQ+NGVAERRNRTL++M RSM+S+S + WGEAL T
Sbjct: 965 MPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKT 1006
Score = 61.2 bits (147), Expect(3) = 2e-63
Identities = 65/329 (19%), Positives = 122/329 (37%), Gaps = 5/329 (1%)
Frame = -2
Query: 1831 NGSNFSTWKRRIRHIL--FHEKVEYVIDVPIPDEPDNPNPAVGRCYERFLEDDKIDRSTM 1658
+GSNFS W R + L + + D P P+ D+ P + + + +++ M
Sbjct: 388 DGSNFSEWYERGQFSLGILDLDLALISDKP-PEATDDSTPEQVEQSKAWSKSNRLSLMFM 446
Query: 1657 LTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVVDHCI 1478
+ +++ + ++V + + K+ L+ + T + + + H +
Sbjct: 447 RMTIANNIKTSLPQTEFASEFLKSVEERFKRADKSLAGTLMAELTTMKYDGQKGIQQHIL 506
Query: 1477 RMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLLGVEA 1298
MT + A+G + + V +L+SLP + N + N+ L E
Sbjct: 507 NMTEKTAKLKALGMGMDESFLVQFVLNSLPSQFAPFKIHYNTNSDQWNLNELTSKCIQEE 566
Query: 1297 QRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXN---ITCYQCRQKG 1127
R + G + VT V ++CY C +KG
Sbjct: 567 VRLRQEGHNLALAVTHGVTKKKGKFKKGRNFPPKKSGPGEGSQNHDGKFTVSCYFCGKKG 626
Query: 1126 HY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVEKSRDCFVN 947
H +C + ++ V ES L + +N WWID ++ HV F+
Sbjct: 627 HVKKDCIKRKAWFEKRGI---NLSFVCYESNLAEVPSNTWWIDSGATT-HVTNLMQGFLT 682
Query: 946 IKEIKTGEHRVYMGNNTYCDVLGIRNVRL 860
++ K E +YMGN +V+ + RL
Sbjct: 683 TRKPKESEKFLYMGNRLKVEVVAVGTYRL 711
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 167 bits (423), Expect(3) = 4e-63
Identities = 87/227 (38%), Positives = 134/227 (59%), Gaps = 2/227 (0%)
Frame = -1
Query: 806 PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 627
P + +N++S CL +GY R + SV + F + G+Y +N V N
Sbjct: 343 PALCKNVISASCLQAEGYGFRSVDNDCSVYYNDIFYFHAPMMSGLYIVNLNGYS---VYN 399
Query: 626 SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKID-FNICEPCVMGKM 450
+A + D + + +WH RLGH+N+ ++ + GL+H + F CE C++GKM
Sbjct: 400 INA---KRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKM 456
Query: 449 SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 273
++ PF G++ R+++LL ++H+D+CGP++ G YF TFTDD+SR+GYVYL+ KS +
Sbjct: 457 TKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSES 516
Query: 272 LDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
+ F + NEV+N LG+ IK LR DRGGEY S FG+ K GI+ Q
Sbjct: 517 FEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQ 563
Score = 71.6 bits (174), Expect(3) = 4e-63
Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 9/341 (2%)
Frame = -2
Query: 1840 ECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIP-DEPDNPNPAVGRCYERFLEDDKIDRS 1664
E L G+N W R +R +L E E+V+ P P D P+N A R +E+ D
Sbjct: 18 EKLTGTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHEKRCNDYLDISC 77
Query: 1663 TMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTT------RMKEI 1502
ML M P+L+ YE +A T G ++ Q +FNT+ R+ E
Sbjct: 78 LMLATMSPELQRQYEA-------LDAHTIITGLRNMFEDQARAKRFNTSKSLFACRLAEG 130
Query: 1501 ESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITL 1322
V H I+M + + +G P+ + +L SLP S E ++ NM+ + + L
Sbjct: 131 NPVSPHVIKMIGYNETLEKLGFPLSQELATDLILQSLPPSFEPFILNFNMNNMNRTLTKL 190
Query: 1321 PMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNITCYQ 1142
P +L + E+ + + +HV + C+
Sbjct: 191 PGML----KTAEESIKKNSNHV---------------MVMHKRKPNNKKSGPAKDAECFF 231
Query: 1141 CRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVS--ESLLDDCDTNAWWIDYYVSSRHVEK 968
C++ GH+ NC + K ++ E L T++W D S H+ K
Sbjct: 232 CKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFD-TGSVAHICK 290
Query: 967 SRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQ 845
S + + GE + +GN + + + LS P +
Sbjct: 291 SLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSR 331
Score = 54.7 bits (130), Expect(3) = 4e-63
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = -3
Query: 123 PDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
P TPQ NGV+E RNRTLLDM RSM+S + L FWG AL T
Sbjct: 567 PGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYALET 607
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 174 bits (440), Expect(3) = 6e-62
Identities = 103/235 (43%), Positives = 138/235 (58%), Gaps = 4/235 (1%)
Frame = -1
Query: 824 TDVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKS-- 651
T+VL P +R+NLV L+N G+ + S +V + K G + G DGM+ LN +
Sbjct: 394 TNVLYVPEIRKNLVFGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLNVMTII 453
Query: 650 -SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKIDFNI- 477
S+ NK ++S Y E SN +WH RL HVN D L + + I +I+ N
Sbjct: 454 KSNMNKA-STSTYMLESSN--------LWHGRLRHVNYDTLRRLINLNHIPTFQINSNHK 504
Query: 476 CEPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVY 297
CE CV K++R F R+ + LD+IHSDIC V+T G YFITF DD +++ YVY
Sbjct: 505 CETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVY 564
Query: 296 LISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
L+ K A++ F+ YK EVENQL +KIKVLR DRGGEY+S F D C HGIIH+
Sbjct: 565 LLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFV-DICAQHGIIHE 618
Score = 68.9 bits (167), Expect(3) = 6e-62
Identities = 74/361 (20%), Positives = 145/361 (40%), Gaps = 17/361 (4%)
Frame = -2
Query: 1846 KTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPD-EPDNPNPAVGRCYERFLEDDKID 1670
K E +G NF W++++ L + + P + D + V + + D +
Sbjct: 40 KPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLC 99
Query: 1669 RSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVV 1490
R+ ++ + L +Y + K ++E++ + Y + + ++G+F +M + ++VV
Sbjct: 100 RNYVMNGLTDSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVV 159
Query: 1489 DHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLL 1310
+ +I I A G + + QV+ ++ LP + + + +++++ L + L
Sbjct: 160 SQVQELQVILHEIHADGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRL 219
Query: 1309 GVEAQRR--EKRG-----ESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNIT 1151
+E R EK+G E+ + V +
Sbjct: 220 RIEEDNRRSEKKGAHTLNEAQANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGK 279
Query: 1150 CYQCRQKGHY*SNC-------PEXXXXXXXXXXXXKDI--VCVVSESLLDDCDTNAWWID 998
C+ C ++GH +C P+ DI VVSE L + WWID
Sbjct: 280 CFNCGKQGHKSVDCRLPKKNKPKEANVIDNITKNVSDIDLTTVVSEVNLVGSNPKEWWID 339
Query: 997 YYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVPTILM 818
++RHV + F + I+ GE +V+MGN+T ++ G V L L T ++
Sbjct: 340 -TGATRHVCSDKKMFSTFEPIENGE-KVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVL 397
Query: 817 Y 815
Y
Sbjct: 398 Y 398
Score = 47.0 bits (110), Expect(3) = 6e-62
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -3
Query: 123 PDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
P +PQ NGVAER+NRTL +M +M+ L + WGEA+ T
Sbjct: 622 PYSPQSNGVAERKNRTLKEMMNAMLISFSLPQNMWGEAILT 662
>emb|CDF77009.1| hypothetical transposable element-related protein, partial [Boechera
divaricarpa]
Length = 1350
Score = 159 bits (402), Expect(3) = 1e-61
Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 4/236 (1%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDG--MYHLNQ-KS 651
D VAP+ R+NL+S LD GY G+ ++ + I+ GT ++ +Y L+ S
Sbjct: 350 DTFVAPSFRRNLISGSYLDKSGYSCLTEHGKTTLSLNSVIIGTGTLLENHSLYMLDTVDS 409
Query: 650 SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI-DFNIC 474
D + + + + N+ S ++WH RLGH+++D++ + S G++ I + IC
Sbjct: 410 QDESLNIETRGTKRKFENA---SSGILWHKRLGHISRDRIERLVSEGILSSIDFTNCEIC 466
Query: 473 EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 294
C+ GK ++ A R+ ++L++IH+DICGP + G YFI+F DDYSR+ Y++L
Sbjct: 467 VDCIKGKQTKHKKSGAYRATEVLELIHTDICGPFPTASWNGQQYFISFIDDYSRYAYIFL 526
Query: 293 ISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQFL 126
I +KS +LD+F +K EVENQL RKIK +R DRGGEY + G + G ++L
Sbjct: 527 IHEKSESLDVFRKFKAEVENQLERKIKFVRSDRGGEYYGRYDGSGEQRPGPFAKYL 582
Score = 69.7 bits (169), Expect(3) = 1e-61
Identities = 67/340 (19%), Positives = 135/340 (39%), Gaps = 3/340 (0%)
Frame = -2
Query: 1864 VSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGR-CYERFL 1688
VS L L GSNF WK +++ +L ++ + + P P + + A + YE++
Sbjct: 9 VSANLGSIPTLTGSNFKEWKSKVKIVLGCMDLDLALRMEQPTSPTDTSTAEYKTVYEKW- 67
Query: 1687 EDDKIDRSTMLTFMDPDLEIIYEGYQI--TKVMFEAVTQSYGEQSKTYIQLLIGKFNTTR 1514
++ +R ++ MD E +I K + + + K I L+ +F+T R
Sbjct: 68 --ERSNRIGLMIIMDTIPETFRGDEEIKNLKQFLAEMDLRFAKSDKAEISTLLYRFSTMR 125
Query: 1513 MKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVN 1334
++ ++ + M+ I + A+ +P+ + + +L+SLP + + N
Sbjct: 126 YHGKGNIREYILEMSNIVSKLKALKTELPEEVLIFFVLNSLPPQFNQLKSSYNTQKEKWT 185
Query: 1333 MITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNI 1154
+ L + V+ + R K+ S +H+ +
Sbjct: 186 LNEL-ISYCVQEEDRMKQERSESAHMVNTSKVQGKRRKIEVVKNDAAKGPTQKKQTKVDD 244
Query: 1153 TCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHV 974
TC+ C++ GH +C + + V +E L + N WW+D ++
Sbjct: 245 TCFFCKKVGHMKKDCTKYHAWRGKKGSF---LAMVCTEVNLVEVPKNTWWLDSGATTNIS 301
Query: 973 EKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSF 854
+ C ++ ++ E R+Y+ N DV I + RL F
Sbjct: 302 VSLQGC-LSYRKPTNAERRIYVANGIPVDVEAIAHFRLFF 340
Score = 59.7 bits (143), Expect(3) = 1e-61
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = -3
Query: 126 MPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
MP +P NGV+ERRNRTL DM RSMI HS L WGEAL T
Sbjct: 593 MPGSPSMNGVSERRNRTLKDMVRSMICHSTLPDSLWGEALKT 634
>gb|AHL77759.1| polyprotein [Prunus persica]
Length = 1363
Score = 172 bits (435), Expect(3) = 5e-59
Identities = 98/243 (40%), Positives = 137/243 (56%), Gaps = 12/243 (4%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 642
DV+ P+M++NL+SV L + S+ ++ ++ G DGM+ LN K +
Sbjct: 350 DVVYIPSMKRNLISVSKLVKSNLQFEFDESGFSIFRNKVMIGNGFLDDGMFRLNCKKPN- 408
Query: 641 NKVVNSSAYFYECSNSLDFSDSL-MWHMRLGHVNKDKLSCMSSSGLIHKIKIDF--NICE 471
N + D +S +WH RLGHV+ ++++ ++ L+ + N+C
Sbjct: 409 PSTANLNINLISTKRKADKEESYRLWHKRLGHVSNERMNLLNKENLLPPLNHHDKDNVCI 468
Query: 470 PCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLI 291
CV GK++ A RS LL+IIH+DICGP KTH G YFITFTDD+SR+GYVYLI
Sbjct: 469 ECVKGKLTNLRKKGATRSEKLLEIIHTDICGPFPTKTHDGFKYFITFTDDFSRYGYVYLI 528
Query: 290 SKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEF---------FGDFCKNHGII 138
S+KS ALD+F YK EVENQL KIKV+R DRGGE+ F F F + GI+
Sbjct: 529 SEKSNALDMFKVYKTEVENQLDSKIKVVRSDRGGEFYGRFDEKGRNPGPFAKFLQEEGIV 588
Query: 137 HQF 129
Q+
Sbjct: 589 AQY 591
Score = 57.0 bits (136), Expect(3) = 5e-59
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = -3
Query: 123 PDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
P TPQ+NGVAERRNRTL++M RS++ S+L WGEAL T
Sbjct: 594 PGTPQQNGVAERRNRTLIEMIRSLMCCSKLPKFLWGEALKT 634
Score = 50.8 bits (120), Expect(3) = 5e-59
Identities = 67/330 (20%), Positives = 120/330 (36%), Gaps = 8/330 (2%)
Frame = -2
Query: 1867 AVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRC-YERF 1691
+V+H + E L GSN++ W+ + L E VI+ P EP A + Y ++
Sbjct: 4 SVNH--NSIETLIGSNYTKWREDVEIALGLLDYEMVIEEEAPAEPAATASAEAKAKYAKW 61
Query: 1690 LEDDKIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRM 1511
+ +K+ M + P + K +++ + + E K I L+ + +
Sbjct: 62 TKANKMAILIMRRSISPSVRGSITPSDNAKKFIDSIAEKFQESKKAEIGTLMAQLTDAKY 121
Query: 1510 KEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLP---RSLESVVVAINMSGRD 1340
+ V H + M I + A+ + + M V ++SLP + L S VA
Sbjct: 122 NGEKCVRTHILNMLEIGNKLQALKVNVDENMMVHFAINSLPSTFKHLRSTYVA------Q 175
Query: 1339 VNMITLPMLLGV---EAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXX 1169
+ T+ L+G+ E Q +K ++
Sbjct: 176 KEIWTVTDLIGICVQEEQNMKKDKAEERVNMVHNFKPKKDFGKGKIAWKKNKEEKGSKGL 235
Query: 1168 XXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDI-VCVVSESLLDDCDTNAWWIDYY 992
CY C++ GH NC K V V ES + +++WW+D
Sbjct: 236 EPEGFKCYFCKKFGHMKRNCDRYKCWLDKQKAKGKSSQVNVCFESNAIEISSDSWWLD-S 294
Query: 991 VSSRHVEKSRDCFVNIKEIKTGEHRVYMGN 902
++ HV F + E +V++GN
Sbjct: 295 GATVHVANCLQGFKTKRLPSKAEMKVFVGN 324
>emb|CAN81793.1| hypothetical protein VITISV_020571 [Vitis vinifera]
Length = 1193
Score = 184 bits (466), Expect(3) = 5e-59
Identities = 92/233 (39%), Positives = 145/233 (62%), Gaps = 1/233 (0%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 642
+ V P+ R+NL+SV CLD GY +G VS+ + I+ G+ D +Y LN K+++
Sbjct: 218 ETFVVPSFRRNLISVSCLDKFGYCCSFGNGMVSLYLNSNIIGIGSLTDKLYKLNIKATNG 277
Query: 641 NKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI-DFNICEPC 465
N+ ++SS Y + ++ + S++WH RLGH++ ++ + G++ + DF +C C
Sbjct: 278 NETLHSSNYGIK-RKLMNENSSMLWHKRLGHISNQQIQRLVLEGILDPLDFSDFQVCIEC 336
Query: 464 VMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISK 285
+ GK + A R +D+L++IH+DICGP + G YFITF DDYSR+GY+YLI++
Sbjct: 337 IKGKQTNMRKKNANRCSDVLELIHTDICGPFPTPSWNGQQYFITFIDDYSRYGYLYLINE 396
Query: 284 KSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQFL 126
KS +LD+F ++K EVENQL +KIK +R DRGGEY + G + G ++L
Sbjct: 397 KSQSLDVFKNFKAEVENQLSKKIKAVRSDRGGEYYGRYDGSGEQRPGPFAKYL 449
Score = 64.3 bits (155), Expect(3) = 5e-59
Identities = 30/42 (71%), Positives = 32/42 (76%)
Frame = -3
Query: 126 MPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
MP TP +NGVAERRNRTL DM RSMISHS L WGEA+ T
Sbjct: 460 MPGTPSQNGVAERRNRTLKDMVRSMISHSTLPESLWGEAIKT 501
Score = 31.6 bits (70), Expect(3) = 5e-59
Identities = 26/99 (26%), Positives = 40/99 (40%)
Frame = -2
Query: 1156 ITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRH 977
ITC+ ++ GH C + + VC SE L T+ WWID ++ H
Sbjct: 112 ITCFFYKKAGHMKKTCTKYAAWREKKGTLL-NFVC--SEINLAVVPTDTWWIDTGATT-H 167
Query: 976 VEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 860
+ + + + GE +Y+GN V I RL
Sbjct: 168 ISVTMQGCLRSRMPIDGERYIYVGNGNKAAVKAIGLFRL 206
>emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]
Length = 1180
Score = 170 bits (431), Expect(3) = 2e-58
Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 10/236 (4%)
Frame = -1
Query: 806 PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 627
P++ +NLVS+ LD GY V SG++S+ + G DG+Y + ++
Sbjct: 330 PSISRNLVSLSKLDATGYXVLFSSGQLSLMLNSVTXGSGILCDGLYKIXLNHEFAQALIT 389
Query: 626 SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI-DFNICEPCVMGKM 450
+ ++ + S++WH RLGH++++ + + G++ + DF++C C+ GK
Sbjct: 390 LHSNVGSKRGLINENSSILWHRRLGHISREXIERLVKEGILQNLDFTDFHVCVDCIKGKQ 449
Query: 449 SRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYAL 270
++ A RSN+LL+IIH+DICGPL+V G YFITF DD SR+GYVYL+ +KS A+
Sbjct: 450 TKHTKKGATRSNELLEIIHTDICGPLSVPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAI 509
Query: 269 DIFISYKNEVENQLGRKIKVLRCDRGGEYKSEF---------FGDFCKNHGIIHQF 129
DIF + EVE QL +KIK++R DRGGEY + F F + HGI Q+
Sbjct: 510 DIFEMFITEVERQLDKKIKIVRSDRGGEYYGRYDESGQNPGPFAKFLEKHGIRAQY 565
Score = 60.1 bits (144), Expect(3) = 2e-58
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = -3
Query: 126 MPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
MP TPQ+NGVAERRNRTL++M RSM+S+S + WGE L T
Sbjct: 567 MPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEXLKT 608
Score = 47.4 bits (111), Expect(3) = 2e-58
Identities = 60/329 (18%), Positives = 118/329 (35%), Gaps = 5/329 (1%)
Frame = -2
Query: 1831 NGSNFSTWKRRIRHIL--FHEKVEYVIDVPIPDEPDNPNPAVGRCYERFLEDDKIDRSTM 1658
+GSNFS W R++ L + + D P P+ D+ P + + + +++ M
Sbjct: 5 DGSNFSEWYERVQFSLGVLDLDLALISDKP-PEATDDSTPEQVEQSKAWXKSNRLSLMFM 63
Query: 1657 LTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVVDHCI 1478
+ +++ + ++V + + K+ L+ + T + + + H +
Sbjct: 64 RMTIANNIKTSLXQTEFASEFLKSVEERFKRADKSLAGTLMXELTTMKYDGQKGIQQHIL 123
Query: 1477 RMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLLGVEA 1298
MT A + A+G + + V +L+SLP + N + N+ L E
Sbjct: 124 NMTEKAAKLKALGMGMDESFLVQFVLNSLPSXFAPFKIHYNTNSDQWNLNELTSKCIQEE 183
Query: 1297 QRREKRGESSPSHVTEEVA---XXXXXXXXXXXXXXXXXXXXXXXXXXXNITCYQCRQKG 1127
R + G + VT V ++CY C +KG
Sbjct: 184 VRLRQEGHNXAXXVTHGVTKKKGKFKKGXNFPPKKSXPGEGSQSHDGKFTVSCYFCGKKG 243
Query: 1126 HY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVEKSRDCFVN 947
H + C+ ++ + N ++ Y + V F+
Sbjct: 244 HVKKD-------------------CIKRKAWFEKRGINLSFVCYESNLAEVSFKYLGFLT 284
Query: 946 IKEIKTGEHRVYMGNNTYCDVLGIRNVRL 860
++ K E +YMGN +V+ + RL
Sbjct: 285 TRKPKESEKFLYMGNRLKXEVVAVGTYRL 313
>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 167 bits (424), Expect(3) = 3e-58
Identities = 101/233 (43%), Positives = 134/233 (57%), Gaps = 3/233 (1%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKS--S 648
+VL P +R+NLVS L+ G+ + S V + K+G + G DG++ LN +
Sbjct: 384 NVLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNGMYVGKGYVNDGLFKLNVMTLKP 443
Query: 647 DFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKIDF-NICE 471
N SSAY E SN +WH RLGHVN + L + + I +ID + C+
Sbjct: 444 TINNKATSSAYLLESSN--------IWHGRLGHVNFNSLRKLINMKHIPNFQIDLKHKCK 495
Query: 470 PCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLI 291
CV K++R F R+++ LD+IHSDIC +++T G YFITF DD +++ YVYL+
Sbjct: 496 TCVEAKLTRSSFQIIQRNSEPLDLIHSDICDFKSIQTRGGNKYFITFIDDCTKYCYVYLL 555
Query: 290 SKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
K ALD FI YKNEVENQL RKIK LR DRGGEY F C+ GIIHQ
Sbjct: 556 KSKDEALDKFILYKNEVENQLNRKIKELRSDRGGEYVVPFM-SLCEQSGIIHQ 607
Score = 62.8 bits (151), Expect(3) = 3e-58
Identities = 64/353 (18%), Positives = 136/353 (38%), Gaps = 9/353 (2%)
Frame = -2
Query: 1846 KTECLNGSNFSTWKRRIRHILFHEKVEYVI--DVPIPDEPDNPNPAVGRCYERFLEDDKI 1673
+ E NG NF W++++ L + + D P P E + + V + + D +
Sbjct: 41 RPEKFNGQNFKRWQQKMFFYLTTLNLARFLTKDAPKPKEGET-DIQVASAIDAWHHSDFL 99
Query: 1672 DRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESV 1493
++ ++ + L +Y G + K ++E++ + Y + + ++G+F +M + ++V
Sbjct: 100 CKNYVMNGLSDSLYNVYIGKKTAKELWESLDRKYKTEDAGTKKFVVGRFLDFKMVDSKTV 159
Query: 1492 VDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPML 1313
+ + +I I A G + + QV+ ++ LP + + + +++N+ L +
Sbjct: 160 ISQVQELQIILSEILAEGMHLSETFQVAAIIEKLPPAWKDFKSYLKHKQKEMNIEGLVVK 219
Query: 1312 LGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNITCYQCRQ 1133
L +E + R ++ A CY C +
Sbjct: 220 LRIE---EDNRNAERIGAISMAKANFVEHGPKKKKKKLGPKGGISKKQTKFQGKCYNCDK 276
Query: 1132 KGHY*SNC-------PEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHV 974
GH S+C ++ VV E + + WWID ++RHV
Sbjct: 277 MGHKASDCRLPKKKREANVVENITQHVSDINLSAVVLEVNMVGSNPREWWID-TGATRHV 335
Query: 973 EKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVPTILMY 815
+ F + E + +++MGN+ ++ G V L L ++Y
Sbjct: 336 CSDKGLFTSF-EAASNREKLFMGNSATSEIEGQGKVALKMTSGKELTLNNVLY 387
Score = 47.0 bits (110), Expect(3) = 3e-58
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = -3
Query: 153 ESWYYSSIFMPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEAL 7
+S + P +PQ NG+AER+NRTL +M +M+ S L + WGEA+
Sbjct: 601 QSGIIHQVTAPYSPQSNGIAERKNRTLKEMMNAMLISSGLPQNMWGEAV 649
>ref|XP_011624299.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94, partial [Amborella trichopoda]
Length = 747
Score = 159 bits (402), Expect(3) = 7e-58
Identities = 89/241 (36%), Positives = 144/241 (59%), Gaps = 6/241 (2%)
Frame = -1
Query: 830 YYTDVL---VAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKV--DGMYH 666
YY D++ V P+ R+NLVSV CLD GY + S+ + + G+ + D +Y
Sbjct: 340 YYLDLIDTFVVPSFRRNLVSVSCLDKLGYCCSFGNNCFSLSINSNTVGTGSLMVYDNLYL 399
Query: 665 LNQKSSDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI- 489
L+ +S +N+ +N + + + S SL WH RLGH++++++ + S G++ I
Sbjct: 400 LDTVAS-YNETLNVESRGTKRKMDNEKSSSL-WHKRLGHISRNRVERLVSDGILDSIDFS 457
Query: 488 DFNICEPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRF 309
DF++C C+ GK ++ A R+ D+L++IH+DICGP + G YF++F DDYSR+
Sbjct: 458 DFDVCIECIKGKQTKTKKLGAKRAIDVLELIHTDICGPFPTPSWNGQRYFVSFIDDYSRY 517
Query: 308 GYVYLISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQF 129
Y++L+ +KS LD+F S+K EVENQL ++IK +R DRGGEY + G + G ++
Sbjct: 518 AYLFLLHEKSQVLDVFKSFKAEVENQLSKRIKQVRSDRGGEYYGRYDGSGEQRPGPFARY 577
Query: 128 L 126
L
Sbjct: 578 L 578
Score = 62.8 bits (151), Expect(3) = 7e-58
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = -3
Query: 126 MPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
MP +P NGVAERRNRTL DM RSMISHS L WGEAL T
Sbjct: 589 MPGSPSMNGVAERRNRTLKDMVRSMISHSTLPESLWGEALKT 630
Score = 53.9 bits (128), Expect(3) = 7e-58
Identities = 65/344 (18%), Positives = 127/344 (36%), Gaps = 8/344 (2%)
Frame = -2
Query: 1867 AVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDE-PDNPNPAVGRCYERF 1691
+VS L+ LNG+NF WK I +L ++ + + P D R YE++
Sbjct: 3 SVSANLNSVPVLNGNNFKDWKENIFIVLGCMDLDLALRMDRPASLTDTSTSEQRRIYEKW 62
Query: 1690 LEDDKIDRSTMLTFM-------DPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIG 1532
DRS ++ M + + E + + + + K L+
Sbjct: 63 ------DRSNRMSLMIIKRGIPEAFRGAVSEEVTDATTFLAEIEKRFAKSDKAETSTLLK 116
Query: 1531 KFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINM 1352
K + + K E++ ++ + M+ +A + A+ + D + V +L SLP V+ N
Sbjct: 117 KLISMKFKGKENIREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPPQFSQFKVSYNC 176
Query: 1351 SGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXX 1172
R+ + + V+ + R K+ ++ +H+ +
Sbjct: 177 Q-REKWTLNELISFCVQEEERLKQEKTESAHLA-STSKDKGKKRKNEAAKDKGPAHKKQT 234
Query: 1171 XXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYY 992
+ C+ C KGH C + + V SE L N WW+D
Sbjct: 235 QTNSDDGCFFCNMKGHMKKECAKYIAWRAKKGTF---LTLVCSEVNLASVPRNTWWLDSG 291
Query: 991 VSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 860
++ + C ++ ++ E +Y+G+ +V I + RL
Sbjct: 292 ATTNISVSMQGC-LSYRKPNDAERSIYVGDGKSVNVEAIGHFRL 334
>emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
Length = 1356
Score = 153 bits (387), Expect(3) = 3e-57
Identities = 85/236 (36%), Positives = 138/236 (58%), Gaps = 4/236 (1%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMY---HLNQKS 651
D P+ R+NL+SV LD GY + + ++ + + GT + +Y +L +
Sbjct: 351 DTFXVPSFRRNLISVSVLDKSGYCCSFGNNKFTLSINSNAV--GTGLLNVYDNLYLLETV 408
Query: 650 SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI-DFNIC 474
+N+ ++ + + + D S SL WH RLGH++K ++ + S G++ + DF+IC
Sbjct: 409 PSYNETLHVESRGTKRKLNKDNSASL-WHKRLGHISKSRVERLVSDGILDSLDFSDFDIC 467
Query: 473 EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 294
C+ GK ++ A R+ D+L++IH+DICGP + G YFITF DDYSR+GY++L
Sbjct: 468 VECIKGKQTKTKKLGANRATDVLELIHTDICGPYPTASWNGQQYFITFIDDYSRYGYLFL 527
Query: 293 ISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQFL 126
I +KS +LD+F ++K EVE QL ++IK +R DRGGEY + G + G ++L
Sbjct: 528 IHEKSQSLDVFKTFKAEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQRPGPFAKYL 583
Score = 62.8 bits (151), Expect(3) = 3e-57
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = -3
Query: 126 MPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
MP +P NGVAERRNRTL DM RSMISHS L WGEAL T
Sbjct: 594 MPGSPSMNGVAERRNRTLKDMVRSMISHSTLPEKLWGEALKT 635
Score = 57.8 bits (138), Expect(3) = 3e-57
Identities = 64/347 (18%), Positives = 132/347 (38%), Gaps = 7/347 (2%)
Frame = -2
Query: 1879 MASKAVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRCY 1700
+++ ++S ++ LNG+NF WK + +L ++ + +P PDE + + Y
Sbjct: 5 ISTTSISANINNVPMLNGTNFKDWKENMMILLGCMDIDLALRMPKPDELNEXSTQEDEVY 64
Query: 1699 ERFLEDDKIDRSTMLT--FMDPDLEIIYEGYQITKV-----MFEAVTQSYGEQSKTYIQL 1541
K +RS L+ M + + G +V + + + + K
Sbjct: 65 W-----GKWERSNRLSLMIMKRGIPEAFRGAVTDEVTNASDFLAEIXKRFAKNDKAETST 119
Query: 1540 LIGKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVA 1361
L+ + + K +V ++ + M+ +A + A+ + D + V +L SLP V+
Sbjct: 120 LLASLISMKYKGKGNVREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPAQFNQFKVS 179
Query: 1360 INMSGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXX 1181
N +D + + V+ + R K+ ++ +H+
Sbjct: 180 YNCQ-KDKWTLNELISFCVQEEERLKQDKTESAHLAS--TSKDKGKRKNKDNKVAASNGP 236
Query: 1180 XXXXXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWI 1001
+TC+ C + GH C + + V SE L N WW+
Sbjct: 237 EQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKKGMF---LTLVCSEVNLASVSRNTWWL 293
Query: 1000 DYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 860
D ++ H+ S ++ ++ E +Y+G+ +V I + RL
Sbjct: 294 DSGATT-HICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRL 339
>emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]
Length = 1354
Score = 153 bits (387), Expect(3) = 2e-56
Identities = 85/236 (36%), Positives = 139/236 (58%), Gaps = 4/236 (1%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMY---HLNQKS 651
D + P+ RQNL+SV LD GY + + ++ + + GT + +Y +L +
Sbjct: 396 DTFIVPSFRQNLISVSVLDKSGYCCSFGNNKFTLSINSNAV--GTGLLNVYDNLYLLETV 453
Query: 650 SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI-DFNIC 474
+N+ ++ + + + D S SL WH RLGH++K ++ + S G++ + DF+IC
Sbjct: 454 PSYNETLHVESRGTKRKLNKDNSASL-WHKRLGHISKSRVERLVSDGILDSLDFSDFDIC 512
Query: 473 EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 294
C+ GK ++ A R+ D+L++IH+DI GP + G YFITF DDYSR+GY++L
Sbjct: 513 VECIKGKQTKTKKLGANRATDVLELIHTDIXGPYPTASWNGQXYFITFIDDYSRYGYLFL 572
Query: 293 ISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQFL 126
I +KS +LD+F ++K EVE QL ++IK +R DRGGEY + G ++ G ++L
Sbjct: 573 IHEKSQSLDVFKTFKXEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQHPGPFAKYL 628
Score = 60.5 bits (145), Expect(3) = 2e-56
Identities = 29/42 (69%), Positives = 30/42 (71%)
Frame = -3
Query: 126 MPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
MP +P NGVAERRNR L DM RSMISHS L WGEAL T
Sbjct: 639 MPGSPSMNGVAERRNRILKDMVRSMISHSTLPEKLWGEALKT 680
Score = 57.4 bits (137), Expect(3) = 2e-56
Identities = 66/351 (18%), Positives = 134/351 (38%), Gaps = 11/351 (3%)
Frame = -2
Query: 1879 MASKAVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRCY 1700
+++ ++S ++ LNG+NF WK + +L ++ + +P PDE + +
Sbjct: 50 ISTTSISANINNVPMLNGTNFKDWKENMMILLGCMDIDLALRMPKPDELNEQSTQ----- 104
Query: 1699 ERFLEDD----KIDRSTMLT--FMDPDLEIIYEGYQITKV-----MFEAVTQSYGEQSKT 1553
EDD K +RS L+ M + + G +V + + + + K
Sbjct: 105 ----EDDVYWGKWERSNRLSLMIMKRGIPEAFRGAVTDEVTNASDFLAEIQKRFAKNDKA 160
Query: 1552 YIQLLIGKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLES 1373
L+ + + K +V ++ + M+ +A + A+ + D + V +L SLP
Sbjct: 161 ETSTLLASLISMKYKGKGNVREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPAQFNQ 220
Query: 1372 VVVAINMSGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXX 1193
V+ N +D + + V+ + R K+ ++ +H+
Sbjct: 221 FKVSYNCQ-KDKWTLNELISFCVQEEERLKQDKTESAHLAS--TSKDKGKRKNKDNKVAA 277
Query: 1192 XXXXXXXXXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTN 1013
+TC+ C + GH C + + V SE L N
Sbjct: 278 SNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKKGMF---LTLVCSEVNLASVSRN 334
Query: 1012 AWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 860
WW+D ++ H+ S ++ ++ E +Y+G+ +V I + RL
Sbjct: 335 TWWLDSGATT-HICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRL 384
>gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 152 bits (383), Expect(3) = 8e-53
Identities = 84/217 (38%), Positives = 126/217 (58%), Gaps = 4/217 (1%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 642
DVL P+M++NLVSV LDN GY + + + + + +Y ++ + +
Sbjct: 381 DVLYVPSMKRNLVSVSRLDNDGYYCTFGNNRCIIMHDNKEVGLAVGWEQLYQISVCDATY 440
Query: 641 NKVVNSSAYFYECSNSLDF-SDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI---DFNIC 474
N +S+A D + S +WH RLGH+++ ++ + +++ + D + C
Sbjct: 441 NVDSSSNANISTKQKHNDNETSSKLWHYRLGHISRGRIERLIKENILYPLDFSDADIDHC 500
Query: 473 EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 294
C+ GK S++ A RS +L+IIH+DICGP N K+ G FITFTDDYSR+GY+Y
Sbjct: 501 IDCIKGKYSKQIKKGANRSMGILEIIHTDICGPFNEKSVDGFDSFITFTDDYSRYGYIYP 560
Query: 293 ISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEY 183
I ++S ALD F +K EVENQ RKIK++R DRGGEY
Sbjct: 561 IKERSEALDKFKIFKAEVENQHDRKIKIVRSDRGGEY 597
Score = 59.7 bits (143), Expect(3) = 8e-53
Identities = 30/51 (58%), Positives = 34/51 (66%)
Frame = -3
Query: 153 ESWYYSSIFMPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
ES + P PQ+NGVAERRNRTL+DM RSM+SHS L W EAL T
Sbjct: 617 ESGIKAQYSAPGEPQQNGVAERRNRTLMDMVRSMLSHSTLPVKLWMEALKT 667
Score = 47.4 bits (111), Expect(3) = 8e-53
Identities = 31/98 (31%), Positives = 44/98 (44%)
Frame = -2
Query: 1150 CYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVE 971
CY C + GH +C DI+ V ESL D TN+WWID ++ HV
Sbjct: 277 CYFCGKSGHRQKDC---IGFMRWLSKKGTDIISFVDESLNIDYATNSWWID-SGATFHVA 332
Query: 970 KSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLS 857
S F + +K GE R+ + N +V I + L+
Sbjct: 333 NSLQGFAMRRTLKRGERRIRVANGVETEVEAIGDFTLT 370
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 172 bits (437), Expect(2) = 1e-52
Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 2/227 (0%)
Frame = -1
Query: 806 PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 627
P + +N++SV CLD +G+ I++ S + +G++ LNQ +N +
Sbjct: 12 PAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQSMPIYN--IR 69
Query: 626 SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKID-FNICEPCVMGKM 450
+ + S D + + +WH RLGH+N+ + + S GL++ + + CE C++GKM
Sbjct: 70 TKKF-----KSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKM 124
Query: 449 SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 273
++ PF G + R++DLL +IH+D+CGP++ YFITFTDD+SR+GYVYL+ KS +
Sbjct: 125 TKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKS 184
Query: 272 LDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
+ F ++NEV+NQ G+ IK LR DRGGEY S+ F D + GI+ Q
Sbjct: 185 FENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQ 231
Score = 65.1 bits (157), Expect(2) = 1e-52
Identities = 31/46 (67%), Positives = 36/46 (78%)
Frame = -3
Query: 138 SSIFMPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
S + P TPQ NGV+ERRNRTLLDM RSM+SH++L S FWG AL T
Sbjct: 230 SQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALET 275
>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
Length = 1303
Score = 172 bits (436), Expect(2) = 3e-52
Identities = 90/230 (39%), Positives = 139/230 (60%), Gaps = 4/230 (1%)
Frame = -1
Query: 809 APNMRQNLVSVPCLDNKGYEVRIRS--GEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNK 636
+P M +N++S L +G+ + G +SV K+G + F DG+Y + +
Sbjct: 339 SPEMARNIISFHALFRQGFHFSFDNNIGSISVFKNGILNFTAYPCDGVYETVECVDNLGH 398
Query: 635 VVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKIDFN-ICEPCVM 459
VN + + ++ ++ + +WH RLGH++K +++ + G++ + + +CE C++
Sbjct: 399 SVN----YIDSTSGVE--KACLWHSRLGHISKKRIAQLQKDGVLESFDLKSDDVCESCLL 452
Query: 458 GKMSRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKK 282
GKM++ PF G R LLDIIH+D+CGP T G +++TFTDD+SR+GY+YLI K
Sbjct: 453 GKMTKSPFKGSFERGEGLLDIIHTDVCGPFRSTTKDGTRFYVTFTDDFSRYGYIYLIKHK 512
Query: 281 SYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEFFGDFCKNHGIIHQ 132
S + F +KNEVENQLGRKIK+LR DRGGEY S F D+ K GI+ Q
Sbjct: 513 SDTFEKFKEFKNEVENQLGRKIKMLRSDRGGEYLSIEFLDYLKECGIVSQ 562
Score = 63.9 bits (154), Expect(2) = 3e-52
Identities = 31/46 (67%), Positives = 34/46 (73%)
Frame = -3
Query: 138 SSIFMPDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
S + P TPQ NGVAERRNRTLLDM RSM+S + L HFWG AL T
Sbjct: 561 SQLTPPRTPQLNGVAERRNRTLLDMVRSMMSRASLPIHFWGYALET 606
Score = 64.7 bits (156), Expect = 4e-07
Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Frame = -2
Query: 1786 LFHEKVEYVIDVPIPD-EPDNPNPAVGRCYERFLEDDKIDRSTMLTFMDPDLEIIYEGYQ 1610
L +E EYV++ + D +P+ P Y++ +D M+ M+P+L+ IYE Y
Sbjct: 3 LRYENKEYVLETELVDVDPETATPEEIASYQKHSDDATKVACIMIATMNPELQRIYEDYW 62
Query: 1609 ITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPI 1430
+ M + + + + +Q + ++ F ++ K+ ES+ H RM + + + P+
Sbjct: 63 PFE-MHKELAEKFRKQERIERCEVVKDFTNSKPKDGESICAHVQRMQGYVERLRKLAMPV 121
Query: 1429 PDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLLGVEAQRREKRGESSPS 1262
P+ + V +L+SLP S + +A +++ N+ L +L V +G+S PS
Sbjct: 122 PEELAVDIVLNSLPSSYDQFRLAYHLNNNQANLTELHRMLRVAED--GMKGKSVPS 175
>gb|AAD12997.1| gag-pol polyprotein [Zea mays]
Length = 1406
Score = 145 bits (366), Expect(3) = 4e-52
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 15/246 (6%)
Frame = -1
Query: 821 DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 642
DVL P++R+NL+SV LD++ + ++ + + + D +Y L+Q SD
Sbjct: 361 DVLYVPSLRRNLISVSRLDDQHIHCHFGDRQCVIQFDNKDVGLAIRRDMLYLLSQ--SDV 418
Query: 641 NKVVN-----SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIHKIKI-DFN 480
V++ ++ + S + S +WH RLGH+++ ++ + ++H + D
Sbjct: 419 VNVLDIPENDPASSGRKRKRSDGETSSKLWHYRLGHISRGRIESLVKEQILHPLDFTDLE 478
Query: 479 ICEPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYV 300
C C+ GK +++ A S +L+IIH+DICGP V+T G FITFTDDYSR+GY+
Sbjct: 479 QCRGCIKGKFAKQIKKDAKHSTRVLEIIHTDICGPFPVRTVDGFNSFITFTDDYSRYGYI 538
Query: 299 YLISKKSYALDIFISYKNEVENQLGRKIKVLRCDRGGEYKSEF---------FGDFCKNH 147
Y I ++S ALD F +K EVENQ KIK++R DRGGEY F F + +
Sbjct: 539 YPIKERSEALDKFKQFKAEVENQHDLKIKIVRSDRGGEYYGRHTEYGQVPGPFARFLREN 598
Query: 146 GIIHQF 129
GI+ Q+
Sbjct: 599 GIVAQY 604
Score = 57.0 bits (136), Expect(3) = 4e-52
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = -3
Query: 123 PDTPQKNGVAERRNRTLLDMTRSMISHSELGSHFWGEALST 1
P PQ+NGVAERRNRTL+DM RSM+S+S L W EAL T
Sbjct: 607 PGEPQQNGVAERRNRTLMDMVRSMLSYSNLPLGLWMEALKT 647
Score = 54.3 bits (129), Expect(3) = 4e-52
Identities = 72/351 (20%), Positives = 131/351 (37%), Gaps = 19/351 (5%)
Frame = -2
Query: 1855 ELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRCYERFLEDD- 1679
++++ + L+GSN+ +W+ I I +++Y + P EP P + ++ D
Sbjct: 5 QIAQMKPLDGSNYHSWREDIDMITTVGEIDYALRFDKPVEPTVGTPNYDHRWMQYSIDKV 64
Query: 1678 KIDRST------MLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTT 1517
K +RS + + L+ + K E V + SK Y L+ +F
Sbjct: 65 KWERSNDKCMIILKRSIKEPLKSSIPECETAKEYLERVASHHQGSSKAYACSLMTEFVNA 124
Query: 1516 RM--KEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGR 1343
+ + + I +++AK +G+P+ + V ++ SLP+ E+ + N S
Sbjct: 125 KYDGNGVRPFIQKMI--SIVAKINKYLGSPLHEEFVVFMIMKSLPKEFETFHIQYNTSVT 182
Query: 1342 DVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXX 1163
D I + V+ + R K+ S + + V
Sbjct: 183 DKWNIDQLLAQCVQEEERLKQTGDSVNLIKGNVPRQNKNSKKKFKKQGKQNNQASSSNNN 242
Query: 1162 XNI----------TCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTN 1013
TC C++ GHY CPE KD V V+ESL + +
Sbjct: 243 QPRQGGGFSVPPDTCLYCKKTGHYKRKCPE---FLQYLLESGKDQVTFVNESLYLEYPSY 299
Query: 1012 AWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 860
+WWID ++ HV S + + G + + N V I ++ L
Sbjct: 300 SWWID-SSATVHVANSLQGLRTSQRLPKGRRTIRVANGVEAAVEAIGDIHL 349