BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00016295
         (770 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   170   1e-39
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   168   3e-39
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   164   5e-38
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   162   3e-37
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   149   2e-33
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              149   2e-33
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   149   2e-33
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   149   2e-33
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   149   2e-33
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   5e-33
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   5e-33
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   5e-33
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   148   5e-33
ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF,...   144   9e-32
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   144   9e-32
gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Ambore...   144   9e-32
ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF,...   142   3e-31
gb|KHG01807.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   142   3e-31
gb|KDO48082.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   142   3e-31
gb|KDO48081.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   142   3e-31

>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Nelumbo nucifera]
          Length = 565

 Score =  170 bits (430), Expect = 1e-39
 Identities = 120/263 (45%), Positives = 153/263 (58%), Gaps = 9/263 (3%)
 Frame = -1

Query: 764 PSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL-REE 591
           P + QL+N+   SV +LHE              TRHFPASVL QEQRD  R  L + RE+
Sbjct: 15  PPRTQLKNSSS-SVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIRED 73

Query: 590 KPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR-ENRVSS 414
           K  QA LDR ++++   L +EKK    D+Y + FERQLLY PGLWYL P   + E  + S
Sbjct: 74  KTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS 133

Query: 413 LDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSNLHNANELIPS 249
           +  QS  + T + + V+  D L LAK+AVL SKQAASL  D     ++S+     +L P 
Sbjct: 134 MVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPR 193

Query: 248 FGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKT-SLIDLSD 72
              N I P  +E  VRS RLLERQSK+R  P+   +  E S+ R +D H K     D +D
Sbjct: 194 NLANKI-PLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTND 252

Query: 71  PLRLFLSGAEARQLLTAKEEKEL 3
           PLRLFL G E +QLLT KEE EL
Sbjct: 253 PLRLFLWGPETKQLLTPKEESEL 275


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Nelumbo nucifera]
          Length = 568

 Score =  168 bits (426), Expect = 3e-39
 Identities = 119/265 (44%), Positives = 153/265 (57%), Gaps = 11/265 (4%)
 Frame = -1

Query: 764 PSKHQLRNAHP--LSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL-R 597
           P + QL+N+    + V +LHE              TRHFPASVL QEQRD  R  L + R
Sbjct: 15  PPRTQLKNSSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIR 74

Query: 596 EEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR-ENRV 420
           E+K  QA LDR ++++   L +EKK    D+Y + FERQLLY PGLWYL P   + E  +
Sbjct: 75  EDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPL 134

Query: 419 SSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSNLHNANELI 255
            S+  QS  + T + + V+  D L LAK+AVL SKQAASL  D     ++S+     +L 
Sbjct: 135 LSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLE 194

Query: 254 PSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKT-SLIDL 78
           P    N I P  +E  VRS RLLERQSK+R  P+   +  E S+ R +D H K     D 
Sbjct: 195 PRNLANKI-PLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDT 253

Query: 77  SDPLRLFLSGAEARQLLTAKEEKEL 3
           +DPLRLFL G E +QLLT KEE EL
Sbjct: 254 NDPLRLFLWGPETKQLLTPKEESEL 278


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X3 [Nelumbo nucifera]
          Length = 540

 Score =  164 bits (416), Expect = 5e-38
 Identities = 115/250 (46%), Positives = 145/250 (58%), Gaps = 9/250 (3%)
 Frame = -1

Query: 725 VAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQID 552
           V +LHE              TRHFPASVL QEQRD  R  L + RE+K  QA LDR +++
Sbjct: 2   VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 551 NDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEE 375
           +   L +EKK    D+Y + FERQLLY PGLWYL P   + E  + S+  QS  + T + 
Sbjct: 62  DKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKN 121

Query: 374 LHVKAYDLLALAKQAVLVSKQAASLIVD-----SNSNLHNANELIPSFGMNDISPPEKEN 210
           + V+  D L LAK+AVL SKQAASL  D     ++S+     +L P    N I P  +E 
Sbjct: 122 VDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI-PLREEV 180

Query: 209 IVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKT-SLIDLSDPLRLFLSGAEARQ 33
            VRS RLLERQSK+R  P+   +  E S+ R +D H K     D +DPLRLFL G E +Q
Sbjct: 181 AVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQ 240

Query: 32  LLTAKEEKEL 3
           LLT KEE EL
Sbjct: 241 LLTPKEESEL 250


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X4 [Nelumbo nucifera]
          Length = 525

 Score =  162 bits (409), Expect = 3e-37
 Identities = 110/229 (48%), Positives = 139/229 (60%), Gaps = 9/229 (3%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFPASVL QEQRD  R  L + RE+K  QA LDR ++++   L +EKK    D+Y + F
Sbjct: 8   RHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGF 67

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           ERQLLY PGLWYL P   + E  + S+  QS  + T + + V+  D L LAK+AVL SKQ
Sbjct: 68  ERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQ 127

Query: 311 AASLIVD-----SNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSA 147
           AASL  D     ++S+     +L P    N I P  +E  VRS RLLERQSK+R  P+  
Sbjct: 128 AASLAKDYELFGADSHESFLPDLEPRNLANKI-PLREEVAVRSKRLLERQSKRRWIPRPK 186

Query: 146 PLGDEISSLRTTDRHHKT-SLIDLSDPLRLFLSGAEARQLLTAKEEKEL 3
            +  E S+ R +D H K     D +DPLRLFL G E +QLLT KEE EL
Sbjct: 187 VVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESEL 235


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
           vinifera]
          Length = 567

 Score =  149 bits (377), Expect = 2e-33
 Identities = 104/228 (45%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLH-LREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           R FP SVL QEQRD++R     L++E+ +QA L++ Q++   S ++E  +   ++Y+ +F
Sbjct: 53  RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDD-HNQYMVNF 111

Query: 488 ERQLLYSPGLWYLSPPSQ--RENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 315
           ERQLL  PGLWY  P SQ   ++  SS  M+S+ +D +  + VK  D+LALAK+A+  SK
Sbjct: 112 ERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASK 171

Query: 314 QAASLIVDSNSNLHNAN-ELIPSFGMNDISPPE---KENIVRSTRLLERQSKKRRAPKSA 147
           QA SL    N+ L  A+ E  PS  +  IS P    +E  VRSTRLLER+SKKRR PK A
Sbjct: 172 QAVSLY--ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVA 229

Query: 146 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 3
            + +   S R   +       D  DPLRLFL G E R+LLTAKEE EL
Sbjct: 230 -VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESEL 276


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  149 bits (377), Expect = 2e-33
 Identities = 104/228 (45%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLH-LREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           R FP SVL QEQRD++R     L++E+ +QA L++ Q++   S ++E  +   ++Y+ +F
Sbjct: 47  RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDD-HNQYMVNF 105

Query: 488 ERQLLYSPGLWYLSPPSQ--RENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 315
           ERQLL  PGLWY  P SQ   ++  SS  M+S+ +D +  + VK  D+LALAK+A+  SK
Sbjct: 106 ERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASK 165

Query: 314 QAASLIVDSNSNLHNAN-ELIPSFGMNDISPPE---KENIVRSTRLLERQSKKRRAPKSA 147
           QA SL    N+ L  A+ E  PS  +  IS P    +E  VRSTRLLER+SKKRR PK A
Sbjct: 166 QAVSLY--ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVA 223

Query: 146 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 3
            + +   S R   +       D  DPLRLFL G E R+LLTAKEE EL
Sbjct: 224 -VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESEL 270


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530789|gb|ESR41972.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  149 bits (376), Expect = 2e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 49  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 108

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 109 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 168

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 169 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 226

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 227 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 270


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530788|gb|ESR41971.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  149 bits (376), Expect = 2e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 116

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 234

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 278


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530787|gb|ESR41970.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  149 bits (376), Expect = 2e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 46  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 105

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 106 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 165

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 166 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 223

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 224 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 267


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X3 [Citrus sinensis]
          Length = 561

 Score =  148 bits (373), Expect = 5e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 49  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 108

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 109 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 168

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 169 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 226

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 227 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 270


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Citrus sinensis]
          Length = 569

 Score =  148 bits (373), Expect = 5e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 116

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 234

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 278


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Citrus sinensis]
          Length = 570

 Score =  148 bits (373), Expect = 5e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 58  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 117

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 118 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 177

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 178 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 236 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 279


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
           gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
           rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  148 bits (373), Expect = 5e-33
 Identities = 106/249 (42%), Positives = 139/249 (55%), Gaps = 7/249 (2%)
 Frame = -1

Query: 728 SVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSL--LHL-REEKPYQAALDRT 561
           SV + HE               RHFP SVL QEQRD +R L  LH  +E+K Y  A D+ 
Sbjct: 31  SVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQ 90

Query: 560 QIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYL-SPPSQRENRVSSLDMQSMPSDT 384
           QI+N  SLN+E   +   +    FE++LL  P L  L S     EN  S+ +MQS+ +DT
Sbjct: 91  QIENGASLNEENASNNFGQL--GFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAADT 148

Query: 383 DEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFGMNDISPPEKENIV 204
            E + V+  +++ALAK+A+  SKQAASL  D   +L ++         +   P EKE +V
Sbjct: 149 KEIVDVEPSNIVALAKKALSASKQAASLSEDLKLDLDDSLSNSLGSANSCTLPVEKEEVV 208

Query: 203 --RSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQL 30
             RSTR LERQSK+RR      + +  SS RT  R   +   D +DPLRLFL G E +QL
Sbjct: 209 TVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQL 268

Query: 29  LTAKEEKEL 3
           LTAKEE EL
Sbjct: 269 LTAKEESEL 277


>ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic
           [Amborella trichopoda]
          Length = 581

 Score =  144 bits (362), Expect = 9e-32
 Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 20/240 (8%)
 Frame = -1

Query: 662 RHFPASV-LQEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFPASV L EQRD  RS     +E+K YQ  +DR + +   S+  E K    D+YLKDF
Sbjct: 52  RHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASIGAETKNFEIDQYLKDF 111

Query: 488 ERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEELHVK-------------AYDLL 348
           ERQLLY P LWYLSP       + SL  Q  P +TD E  +K               D+L
Sbjct: 112 ERQLLYWPALWYLSPSRILPKSLLSLPFQCKPLETDIESEIKESRKKQTNCSSLNPMDVL 171

Query: 347 ALAKQAVLVSKQAASLIVDSNSNLHNAN-ELIPSFGMND--ISPPEKE--NIVRSTRLLE 183
            LAK+AV+ SK AA+L+  S+  + N + ++ P  G+ +  I  P+++    +RS R LE
Sbjct: 172 VLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICIQVPDEDMRTTIRSKRHLE 231

Query: 182 RQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 3
           RQ K+RR PK          +       K    D +DPLR FL G   +QLLT KEE EL
Sbjct: 232 RQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKEESEL 291


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Populus euphratica]
          Length = 557

 Score =  144 bits (362), Expect = 9e-32
 Identities = 101/259 (38%), Positives = 148/259 (57%), Gaps = 5/259 (1%)
 Frame = -1

Query: 764 PSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL-REE 591
           P++  L+N+   SV +L E               +HFP SVL QEQRD+FR L ++ +E+
Sbjct: 15  PTRTHLKNSLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKED 74

Query: 590 KPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR-ENRVSS 414
           +P QA LDR + +  TS ++ K     D+ +++FE QL + P  W L PPSQ+ +N   S
Sbjct: 75  RPSQATLDRRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNLLPPSQKGQNPSMS 134

Query: 413 LDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHN-ANELIPSFGMN 237
              QS+   TD+ + V+  D++ LAK+A+  SK AA  + D++++L N A+    SF + 
Sbjct: 135 FTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAA-FLADNSTDLDNLASTSSSSFSLE 193

Query: 236 DISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTSL-IDLSDPLRL 60
           ++       IVRS R L RQS  RR PK+  +  E    ++ D   + S   D +DPLRL
Sbjct: 194 EV------RIVRSRRHLARQSLNRRVPKTKDMIFETYDSKSADVQKRLSQGFDPNDPLRL 247

Query: 59  FLSGAEARQLLTAKEEKEL 3
           FL G E +QLLTAKEE EL
Sbjct: 248 FLWGPETKQLLTAKEEFEL 266


>gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  144 bits (362), Expect = 9e-32
 Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 20/240 (8%)
 Frame = -1

Query: 662 RHFPASV-LQEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFPASV L EQRD  RS     +E+K YQ  +DR + +   S+  E K    D+YLKDF
Sbjct: 44  RHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASIGAETKNFEIDQYLKDF 103

Query: 488 ERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEELHVK-------------AYDLL 348
           ERQLLY P LWYLSP       + SL  Q  P +TD E  +K               D+L
Sbjct: 104 ERQLLYWPALWYLSPSRILPKSLLSLPFQCKPLETDIESEIKESRKKQTNCSSLNPMDVL 163

Query: 347 ALAKQAVLVSKQAASLIVDSNSNLHNAN-ELIPSFGMND--ISPPEKE--NIVRSTRLLE 183
            LAK+AV+ SK AA+L+  S+  + N + ++ P  G+ +  I  P+++    +RS R LE
Sbjct: 164 VLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICIQVPDEDMRTTIRSKRHLE 223

Query: 182 RQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 3
           RQ K+RR PK          +       K    D +DPLR FL G   +QLLT KEE EL
Sbjct: 224 RQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKEESEL 283


>ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Gossypium raimondii]
          Length = 562

 Score =  142 bits (357), Expect = 3e-31
 Identities = 101/228 (44%), Positives = 134/228 (58%), Gaps = 8/228 (3%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSL---LHLREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLK 495
           RHFP SVL QEQRD  R L    + +E+K Y    D+ Q++N T+L++ K  +       
Sbjct: 54  RHFPTSVLSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEGKASN------- 106

Query: 494 DFERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 315
           +FE+Q+L  P L  LS     EN  SSL+MQS+ +DT+E ++V+   +LALAK A+  SK
Sbjct: 107 NFEQQMLQWPDL-RLSVLELGENPSSSLNMQSVAADTEETMNVEPSTILALAKNALSASK 165

Query: 314 QAASLIVDSNSNLHNANELIPSFGMNDIS--PPEKENI--VRSTRLLERQSKKRRAPKSA 147
           QA +L  D   +L ++  L  S G  + S  P E+E    VRSTR LERQSK+RR P   
Sbjct: 166 QALALAEDLKLDLDDS--LSNSLGSANSSTLPVEEEEAPTVRSTRRLERQSKRRRMPSKF 223

Query: 146 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 3
            + D  S  +T  R   +   D +DPLRLFL G E  QLLTAKEE EL
Sbjct: 224 MISDTYSLRKTNVRKKVSGSYDPNDPLRLFLRGPETTQLLTAKEESEL 271


>gb|KHG01807.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 564

 Score =  142 bits (357), Expect = 3e-31
 Identities = 100/229 (43%), Positives = 135/229 (58%), Gaps = 9/229 (3%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSL---LHLREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLK 495
           RHFP SVL QEQRD  R L    + +E+K Y    D+ Q++N T+L++EK  +       
Sbjct: 54  RHFPTSVLSQEQRDDCRPLPILQYFKEDKAYPGPTDKQQVENGTTLHEEKASN------- 106

Query: 494 DFERQLLYSPGL-WYLSPPSQRENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVS 318
           +FE+Q+L  P L   LS     EN  SSL MQS+ +DT+E ++V+   +LALAK A+  S
Sbjct: 107 NFEQQMLQWPDLRQLLSVLELGENPSSSLYMQSVAADTEEIMNVEPSTILALAKNALSAS 166

Query: 317 KQAASLIVDSNSNLHNANELIPSFGM-NDISPPEKEN---IVRSTRLLERQSKKRRAPKS 150
           KQA +L  D   +L ++  +  S G  N  + P +E+    VRSTR LERQSK+RR P  
Sbjct: 167 KQALALAEDLKLDLDDS--ISNSLGSANSFTLPVEEDEAPTVRSTRRLERQSKRRRIPSK 224

Query: 149 APLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + +  SS +T  R   +   D +DPLRLFL G E  QLLTAKEE EL
Sbjct: 225 FMISETYSSRKTNVRKKASGSYDPNDPLRLFLRGPETTQLLTAKEESEL 273


>gb|KDO48082.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 532

 Score =  142 bits (357), Expect = 3e-31
 Identities = 95/224 (42%), Positives = 128/224 (57%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   I+ +    +EK     D+ ++D 
Sbjct: 20  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDL 79

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 80  EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 139

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+       R LER+SKKR+  K      E
Sbjct: 140 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 197

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 198 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 241


>gb|KDO48081.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 378

 Score =  142 bits (357), Expect = 3e-31
 Identities = 95/224 (42%), Positives = 128/224 (57%), Gaps = 4/224 (1%)
 Frame = -1

Query: 662 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 489
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   I+ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDL 116

Query: 488 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 312
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 311 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 132
           AASL    N  L+ A     S   +   P E+       R LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234

Query: 131 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 3
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 278