BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00013935
         (2253 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010660973.1| PREDICTED: chloroplastic group IIA intron sp...   572   0.0  
ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron sp...   572   0.0  
emb|CBI34982.3| unnamed protein product [Vitis vinifera]              572   0.0  
ref|XP_007217083.1| hypothetical protein PRUPE_ppa000515mg [Prun...   558   0.0  
ref|XP_008230670.1| PREDICTED: chloroplastic group IIA intron sp...   553   0.0  
ref|XP_008230671.1| PREDICTED: chloroplastic group IIA intron sp...   553   0.0  
ref|XP_010255197.1| PREDICTED: chloroplastic group IIA intron sp...   530   0.0  
ref|XP_009614930.1| PREDICTED: chloroplastic group IIA intron sp...   548   0.0  
ref|XP_009762860.1| PREDICTED: chloroplastic group IIA intron sp...   546   0.0  
ref|XP_002517407.1| conserved hypothetical protein [Ricinus comm...   540   0.0  
ref|XP_012082313.1| PREDICTED: chloroplastic group IIA intron sp...   543   0.0  
ref|XP_012082320.1| PREDICTED: chloroplastic group IIA intron sp...   543   0.0  
ref|XP_012082331.1| PREDICTED: chloroplastic group IIA intron sp...   543   0.0  
ref|XP_008341495.1| PREDICTED: LOW QUALITY PROTEIN: chloroplasti...   551   0.0  
ref|XP_011098529.1| PREDICTED: chloroplastic group IIA intron sp...   542   0.0  
ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron sp...   536   0.0  
ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron sp...   536   0.0  
ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron sp...   541   0.0  
ref|XP_010100925.1| Chloroplastic group IIA intron splicing faci...   536   0.0  
gb|KCW56123.1| hypothetical protein EUGRSUZ_I01877 [Eucalyptus g...   545   0.0  

>ref|XP_010660973.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Vitis vinifera]
          Length = 1044

 Score =  572 bits (1474), Expect(2) = 0.0
 Identities = 286/425 (67%), Positives = 338/425 (79%), Gaps = 6/425 (1%)
 Frame = -3

Query: 1324 VKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEP 1145
            VKS  P+ +N+ A  +L++GVG P +VRF LPGEAQ+ EEADR+LDGLGPRF DWWG +P
Sbjct: 316  VKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDP 375

Query: 1144 LPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGL 965
            LPIDADLLPA+VPGYRRPFRLLPYG+KPKLT+DEMT+LRRLGRPLPCHFALGRN+ LQGL
Sbjct: 376  LPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGL 435

Query: 964  AASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLP 785
            AAS++KLWEKCEIAKIAVKRGVQNTNS MMAEELK LTGGTLLSRD+EFI  YRGKDFLP
Sbjct: 436  AASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDFLP 495

Query: 784  PAVSTAIEDRRKPRIHRDKHTTHGH------SSTEISPSLASKAENSTSAGEFHEKSVRK 623
            PAVS+AIE RRK  IHR K     H        +E+  S  +  ++     +    S+ K
Sbjct: 496  PAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTDDQKTNSLSK 555

Query: 622  ERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLK 443
             R  +S  AV+E T+ KL                       ++PE+D+EG+TEEERYML+
Sbjct: 556  RRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLR 615

Query: 442  KVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGG 263
            KVGLRMKPFLLLGRRG+FDGT+ENMHLHWKYRELVKI+++ R  ED++GVA+TLEAESGG
Sbjct: 616  KVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGG 675

Query: 262  ILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLA 83
            ILVAVERV +GYAII+YRGKNY+RPA LRPQTLLNK++A+KRSLEAQR ESLKLHVL+L 
Sbjct: 676  ILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLT 735

Query: 82   QNIDD 68
            +NID+
Sbjct: 736  RNIDE 740



 Score =  274 bits (701), Expect(2) = 0.0
 Identities = 149/268 (55%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
 Frame = -2

Query: 2171 MLLHQYHLSSPFPINTLNSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAETVSKTA 1992
            + L ++H   P P  T  SS      S     +P  SK F+  +SN      A+T+ KTA
Sbjct: 27   LTLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNPKPSK-FILRASNPD----AQTLPKTA 81

Query: 1991 IERIAEKLRNLGYI---EENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSWS 1821
            I+RIAEKLR+LGY+   E  K     K  N  G+AGEIF+P    LPK RVG+TID SWS
Sbjct: 82   IQRIAEKLRSLGYVDGDESRKVLSSDKPAN--GSAGEIFVPLPNQLPKHRVGHTIDQSWS 139

Query: 1820 TPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRRI 1641
             PENPVP PG+G  I+RF                      +E+ PTLAELT+P+ ELRR+
Sbjct: 140  LPENPVPEPGTGGVITRFHELRKEVKREKKLVRK-----EDERAPTLAELTLPEEELRRL 194

Query: 1640 RKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTG 1461
            + +GI+++KKLKVG AGITEGIVNGIHERWRR+EVVKI+CED+ KLNMKRTHD+LERKTG
Sbjct: 195  KGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTG 254

Query: 1460 GLVVWRSGSIIILYRGANYVYPYFLTTN 1377
            GLV+WRSGS IILYRGANY YPYFL+ N
Sbjct: 255  GLVIWRSGSYIILYRGANYKYPYFLSDN 282


>ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Vitis vinifera]
            gi|731419290|ref|XP_010660972.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X1 [Vitis vinifera]
          Length = 1044

 Score =  572 bits (1474), Expect(2) = 0.0
 Identities = 286/425 (67%), Positives = 338/425 (79%), Gaps = 6/425 (1%)
 Frame = -3

Query: 1324 VKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEP 1145
            VKS  P+ +N+ A  +L++GVG P +VRF LPGEAQ+ EEADR+LDGLGPRF DWWG +P
Sbjct: 316  VKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDP 375

Query: 1144 LPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGL 965
            LPIDADLLPA+VPGYRRPFRLLPYG+KPKLT+DEMT+LRRLGRPLPCHFALGRN+ LQGL
Sbjct: 376  LPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGL 435

Query: 964  AASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLP 785
            AAS++KLWEKCEIAKIAVKRGVQNTNS MMAEELK LTGGTLLSRD+EFI  YRGKDFLP
Sbjct: 436  AASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDFLP 495

Query: 784  PAVSTAIEDRRKPRIHRDKHTTHGH------SSTEISPSLASKAENSTSAGEFHEKSVRK 623
            PAVS+AIE RRK  IHR K     H        +E+  S  +  ++     +    S+ K
Sbjct: 496  PAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTDDQKTNSLSK 555

Query: 622  ERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLK 443
             R  +S  AV+E T+ KL                       ++PE+D+EG+TEEERYML+
Sbjct: 556  RRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLR 615

Query: 442  KVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGG 263
            KVGLRMKPFLLLGRRG+FDGT+ENMHLHWKYRELVKI+++ R  ED++GVA+TLEAESGG
Sbjct: 616  KVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGG 675

Query: 262  ILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLA 83
            ILVAVERV +GYAII+YRGKNY+RPA LRPQTLLNK++A+KRSLEAQR ESLKLHVL+L 
Sbjct: 676  ILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLT 735

Query: 82   QNIDD 68
            +NID+
Sbjct: 736  RNIDE 740



 Score =  274 bits (701), Expect(2) = 0.0
 Identities = 149/268 (55%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
 Frame = -2

Query: 2171 MLLHQYHLSSPFPINTLNSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAETVSKTA 1992
            + L ++H   P P  T  SS      S     +P  SK F+  +SN      A+T+ KTA
Sbjct: 27   LTLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNPKPSK-FILRASNPD----AQTLPKTA 81

Query: 1991 IERIAEKLRNLGYI---EENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSWS 1821
            I+RIAEKLR+LGY+   E  K     K  N  G+AGEIF+P    LPK RVG+TID SWS
Sbjct: 82   IQRIAEKLRSLGYVDGDESRKVLSSDKPAN--GSAGEIFVPLPNQLPKHRVGHTIDQSWS 139

Query: 1820 TPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRRI 1641
             PENPVP PG+G  I+RF                      +E+ PTLAELT+P+ ELRR+
Sbjct: 140  LPENPVPEPGTGGVITRFHELRKEVKREKKLVRK-----EDERAPTLAELTLPEEELRRL 194

Query: 1640 RKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTG 1461
            + +GI+++KKLKVG AGITEGIVNGIHERWRR+EVVKI+CED+ KLNMKRTHD+LERKTG
Sbjct: 195  KGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTG 254

Query: 1460 GLVVWRSGSIIILYRGANYVYPYFLTTN 1377
            GLV+WRSGS IILYRGANY YPYFL+ N
Sbjct: 255  GLVIWRSGSYIILYRGANYKYPYFLSDN 282


>emb|CBI34982.3| unnamed protein product [Vitis vinifera]
          Length = 1028

 Score =  572 bits (1474), Expect(2) = 0.0
 Identities = 286/425 (67%), Positives = 338/425 (79%), Gaps = 6/425 (1%)
 Frame = -3

Query: 1324 VKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEP 1145
            VKS  P+ +N+ A  +L++GVG P +VRF LPGEAQ+ EEADR+LDGLGPRF DWWG +P
Sbjct: 316  VKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDP 375

Query: 1144 LPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGL 965
            LPIDADLLPA+VPGYRRPFRLLPYG+KPKLT+DEMT+LRRLGRPLPCHFALGRN+ LQGL
Sbjct: 376  LPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGL 435

Query: 964  AASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLP 785
            AAS++KLWEKCEIAKIAVKRGVQNTNS MMAEELK LTGGTLLSRD+EFI  YRGKDFLP
Sbjct: 436  AASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDFLP 495

Query: 784  PAVSTAIEDRRKPRIHRDKHTTHGH------SSTEISPSLASKAENSTSAGEFHEKSVRK 623
            PAVS+AIE RRK  IHR K     H        +E+  S  +  ++     +    S+ K
Sbjct: 496  PAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTDDQKTNSLSK 555

Query: 622  ERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLK 443
             R  +S  AV+E T+ KL                       ++PE+D+EG+TEEERYML+
Sbjct: 556  RRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLR 615

Query: 442  KVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGG 263
            KVGLRMKPFLLLGRRG+FDGT+ENMHLHWKYRELVKI+++ R  ED++GVA+TLEAESGG
Sbjct: 616  KVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGG 675

Query: 262  ILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLA 83
            ILVAVERV +GYAII+YRGKNY+RPA LRPQTLLNK++A+KRSLEAQR ESLKLHVL+L 
Sbjct: 676  ILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLT 735

Query: 82   QNIDD 68
            +NID+
Sbjct: 736  RNIDE 740



 Score =  274 bits (701), Expect(2) = 0.0
 Identities = 149/268 (55%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
 Frame = -2

Query: 2171 MLLHQYHLSSPFPINTLNSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAETVSKTA 1992
            + L ++H   P P  T  SS      S     +P  SK F+  +SN      A+T+ KTA
Sbjct: 27   LTLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNPKPSK-FILRASNPD----AQTLPKTA 81

Query: 1991 IERIAEKLRNLGYI---EENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSWS 1821
            I+RIAEKLR+LGY+   E  K     K  N  G+AGEIF+P    LPK RVG+TID SWS
Sbjct: 82   IQRIAEKLRSLGYVDGDESRKVLSSDKPAN--GSAGEIFVPLPNQLPKHRVGHTIDQSWS 139

Query: 1820 TPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRRI 1641
             PENPVP PG+G  I+RF                      +E+ PTLAELT+P+ ELRR+
Sbjct: 140  LPENPVPEPGTGGVITRFHELRKEVKREKKLVRK-----EDERAPTLAELTLPEEELRRL 194

Query: 1640 RKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTG 1461
            + +GI+++KKLKVG AGITEGIVNGIHERWRR+EVVKI+CED+ KLNMKRTHD+LERKTG
Sbjct: 195  KGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTG 254

Query: 1460 GLVVWRSGSIIILYRGANYVYPYFLTTN 1377
            GLV+WRSGS IILYRGANY YPYFL+ N
Sbjct: 255  GLVIWRSGSYIILYRGANYKYPYFLSDN 282


>ref|XP_007217083.1| hypothetical protein PRUPE_ppa000515mg [Prunus persica]
            gi|462413233|gb|EMJ18282.1| hypothetical protein
            PRUPE_ppa000515mg [Prunus persica]
          Length = 1117

 Score =  558 bits (1438), Expect(2) = 0.0
 Identities = 287/420 (68%), Positives = 332/420 (79%), Gaps = 5/420 (1%)
 Frame = -3

Query: 1312 LPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEPLPID 1133
            +P  +N  A   LVKGVG  ++VRF LPGEAQ+ EEAD ML+GLGPRF DWWG EPLP+D
Sbjct: 294  IPSTTNERAQPMLVKGVGLQDRVRFQLPGEAQLTEEADHMLEGLGPRFTDWWGYEPLPVD 353

Query: 1132 ADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGLAASI 953
            ADLLPAIVPGYR+PFRLLPYG+KPKLTDDEMT +RRLGRPLPCHFALGRN+NLQGLA+SI
Sbjct: 354  ADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLASSI 413

Query: 952  VKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLPPAVS 773
            VKLWEKCEIAKIAVKRGVQNTN+ +MAEELKRLTGGTLL+RD+EFI LYRGKDFLPPAVS
Sbjct: 414  VKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIVLYRGKDFLPPAVS 473

Query: 772  TAIEDRRKPRIHRDKH-TTHGHSST---EISPSLASKAENSTSAGEFHEKSV-RKERKPK 608
            +AIE+RRK  IH +K    HG S T   E+ P   ++ EN       H+  +   +RK K
Sbjct: 474  SAIEERRKYAIHAEKQIAEHGTSVTTRQELEP--RTEPENKHEWTNDHKMGLPSAKRKLK 531

Query: 607  STNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLKKVGLR 428
            S   V+  TS KL                       ++PE+D+EG+T+EERYML+KVGLR
Sbjct: 532  SAEVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPEIDKEGITKEERYMLRKVGLR 591

Query: 427  MKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGGILVAV 248
            MKPFLL+GRRGVFDGTIENMHLHWKYRELVKI+ + +  E V  VA+TLEAESGGILVAV
Sbjct: 592  MKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGILVAV 651

Query: 247  ERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLAQNIDD 68
            ERV +GYAIIVYRGKNY RPA LRPQTLLNK++AMKRS+EAQR ESLKLHVL+L +NID+
Sbjct: 652  ERVSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNENIDE 711



 Score =  267 bits (682), Expect(2) = 0.0
 Identities = 155/266 (58%), Positives = 185/266 (69%), Gaps = 4/266 (1%)
 Frame = -2

Query: 2171 MLLHQYHL-SSPFPINTLNSSQNLFLFSKSNKTSPNFS-KP--FVTNSSNTSITTKAETV 2004
            MLL   HL +SPFP   L + Q+L  F    KT P+ + KP  F   SS T   T A   
Sbjct: 1    MLLPLTHLPASPFPPKIL-TDQSLSPFFSFPKTLPSQNPKPSKFAIRSSTTGTKTLAP-- 57

Query: 2003 SKTAIERIAEKLRNLGYIEENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSW 1824
             K+AI+RIAEKLR+LG+ E N E P+ + +  T  AGEIF+P  Q LPK RVG+T+D+SW
Sbjct: 58   -KSAIQRIAEKLRSLGFTENN-EKPQPQPD--TKYAGEIFVPLPQRLPKYRVGHTLDSSW 113

Query: 1823 STPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRR 1644
            STPENPVP PG+G AI+RF                     +EE+VPTLAEL++ + ELRR
Sbjct: 114  STPENPVPEPGTGRAIARFHELRREVKKQKELEKTGK---KEERVPTLAELSLGKGELRR 170

Query: 1643 IRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKT 1464
            +  VGI L+KKLK+G AGITEGIVNGIHE WRRSEVVKI CEDL ++NMKRTHD+LERKT
Sbjct: 171  LTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLERKT 230

Query: 1463 GGLVVWRSGSIIILYRGANYVYPYFL 1386
            GGLVVWRSGS I+LYRG NY YPYFL
Sbjct: 231  GGLVVWRSGSKIVLYRGVNYKYPYFL 256



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
 Frame = -2

Query: 1688 PTLAELTIPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLS 1509
            P + +  I + E   +RKVG+ +K  L +G  G+ +G +  +H  W+  E+VKI C + S
Sbjct: 570  PEIDKEGITKEERYMLRKVGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKS 629

Query: 1508 KLNMKRTHDLLERKTGGLVV----WRSGSIIILYRGANYVYPYFLTTNT 1374
               +++    LE ++GG++V       G  II+YRG NY  P  L   T
Sbjct: 630  IEAVQQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQT 678


>ref|XP_008230670.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Prunus mume]
          Length = 1122

 Score =  553 bits (1426), Expect(2) = 0.0
 Identities = 283/418 (67%), Positives = 327/418 (78%), Gaps = 3/418 (0%)
 Frame = -3

Query: 1312 LPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEPLPID 1133
            +P  +N  A   LVKGVG  ++VRF LPGEAQ+ EEADRML+GLGPRF DWWG EPLP+D
Sbjct: 294  IPSTTNERAQPMLVKGVGLQDRVRFQLPGEAQLTEEADRMLEGLGPRFTDWWGYEPLPVD 353

Query: 1132 ADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGLAASI 953
            ADLLPAIVPGYR+PFRLLPYG+KPKLTDDEMT +RRLGRPLPCHFALGRN+NLQGLA+SI
Sbjct: 354  ADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLASSI 413

Query: 952  VKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLPPAVS 773
            VKLWEKCEIAKIAVKRGVQNTN+ +MAEELKRLTGGTLL+RD+EFI LYRGKDFLP AVS
Sbjct: 414  VKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIVLYRGKDFLPSAVS 473

Query: 772  TAIEDRRKPRIHRDKHTTHGHSSTEISPSL--ASKAENSTSAGEFHEKSV-RKERKPKST 602
            +AIE+RRK  IH +K      +S      L   ++ EN       H+  +   +RK KS 
Sbjct: 474  SAIEERRKYAIHAEKQIAERGTSVTTRQELEPRTEPENKHEWTNDHKMGLPSAKRKLKSA 533

Query: 601  NAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLKKVGLRMK 422
              V+  TS KL                       ++PE D+EG+T+EERYML+KVGLRMK
Sbjct: 534  EVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPETDKEGITKEERYMLRKVGLRMK 593

Query: 421  PFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGGILVAVER 242
            PFLL+GRRGVFDGTIENMHLHWKYRELVKI+ + +  E V  VA+TLEAESGGILVAVER
Sbjct: 594  PFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGILVAVER 653

Query: 241  VDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLAQNIDD 68
            V +GYAIIVYRGKNY RPA LRPQTLLNK++AMKRS+EAQR ESLKLHVL+L +NID+
Sbjct: 654  VSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNENIDE 711



 Score =  267 bits (683), Expect(2) = 0.0
 Identities = 153/266 (57%), Positives = 182/266 (68%), Gaps = 4/266 (1%)
 Frame = -2

Query: 2171 MLLHQYHL-SSPFPINTLNSSQNLFLFSKSNKTSPNFS-KP--FVTNSSNTSITTKAETV 2004
            MLL   HL +SPFP   L + Q+L  F    KT P+ + KP  F   SS T   T A   
Sbjct: 1    MLLPLTHLPASPFPPKIL-TDQSLSPFFSFPKTLPSQNPKPSKFAIRSSTTGTKTLAP-- 57

Query: 2003 SKTAIERIAEKLRNLGYIEENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSW 1824
             K+AI+RIAEKLR+LG+ E N++        H   AGEIF+P  Q LPK RVG+T+D+SW
Sbjct: 58   -KSAIQRIAEKLRSLGFTENNEKPQPQPDTKH---AGEIFVPLPQRLPKYRVGHTLDSSW 113

Query: 1823 STPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRR 1644
            STPENPVP PG+G AI+RF                     +EE+VPTLAEL++ + ELRR
Sbjct: 114  STPENPVPEPGTGRAIARFHELRREVKKQKELEKTGK---KEERVPTLAELSLGKGELRR 170

Query: 1643 IRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKT 1464
            +  VGI L+KKLK+G AGITEGIVNGIHE WRRSEVVKI CEDL ++NMKRTHD+LERKT
Sbjct: 171  LTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLERKT 230

Query: 1463 GGLVVWRSGSIIILYRGANYVYPYFL 1386
            GGLVVWRSGS I+LYRG NY YPYFL
Sbjct: 231  GGLVVWRSGSKIVLYRGVNYKYPYFL 256



 Score = 61.6 bits (148), Expect = 3e-06
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
 Frame = -2

Query: 1667 IPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRT 1488
            I + E   +RKVG+ +K  L +G  G+ +G +  +H  W+  E+VKI C + S   +++ 
Sbjct: 577  ITKEERYMLRKVGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQV 636

Query: 1487 HDLLERKTGGLVV----WRSGSIIILYRGANYVYPYFLTTNT 1374
               LE ++GG++V       G  II+YRG NY  P  L   T
Sbjct: 637  AQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQT 678


>ref|XP_008230671.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Prunus mume]
          Length = 1109

 Score =  553 bits (1426), Expect(2) = 0.0
 Identities = 283/418 (67%), Positives = 327/418 (78%), Gaps = 3/418 (0%)
 Frame = -3

Query: 1312 LPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEPLPID 1133
            +P  +N  A   LVKGVG  ++VRF LPGEAQ+ EEADRML+GLGPRF DWWG EPLP+D
Sbjct: 294  IPSTTNERAQPMLVKGVGLQDRVRFQLPGEAQLTEEADRMLEGLGPRFTDWWGYEPLPVD 353

Query: 1132 ADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGLAASI 953
            ADLLPAIVPGYR+PFRLLPYG+KPKLTDDEMT +RRLGRPLPCHFALGRN+NLQGLA+SI
Sbjct: 354  ADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLASSI 413

Query: 952  VKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLPPAVS 773
            VKLWEKCEIAKIAVKRGVQNTN+ +MAEELKRLTGGTLL+RD+EFI LYRGKDFLP AVS
Sbjct: 414  VKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIVLYRGKDFLPSAVS 473

Query: 772  TAIEDRRKPRIHRDKHTTHGHSSTEISPSL--ASKAENSTSAGEFHEKSV-RKERKPKST 602
            +AIE+RRK  IH +K      +S      L   ++ EN       H+  +   +RK KS 
Sbjct: 474  SAIEERRKYAIHAEKQIAERGTSVTTRQELEPRTEPENKHEWTNDHKMGLPSAKRKLKSA 533

Query: 601  NAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLKKVGLRMK 422
              V+  TS KL                       ++PE D+EG+T+EERYML+KVGLRMK
Sbjct: 534  EVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPETDKEGITKEERYMLRKVGLRMK 593

Query: 421  PFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGGILVAVER 242
            PFLL+GRRGVFDGTIENMHLHWKYRELVKI+ + +  E V  VA+TLEAESGGILVAVER
Sbjct: 594  PFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGILVAVER 653

Query: 241  VDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLAQNIDD 68
            V +GYAIIVYRGKNY RPA LRPQTLLNK++AMKRS+EAQR ESLKLHVL+L +NID+
Sbjct: 654  VSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNENIDE 711



 Score =  267 bits (683), Expect(2) = 0.0
 Identities = 153/266 (57%), Positives = 182/266 (68%), Gaps = 4/266 (1%)
 Frame = -2

Query: 2171 MLLHQYHL-SSPFPINTLNSSQNLFLFSKSNKTSPNFS-KP--FVTNSSNTSITTKAETV 2004
            MLL   HL +SPFP   L + Q+L  F    KT P+ + KP  F   SS T   T A   
Sbjct: 1    MLLPLTHLPASPFPPKIL-TDQSLSPFFSFPKTLPSQNPKPSKFAIRSSTTGTKTLAP-- 57

Query: 2003 SKTAIERIAEKLRNLGYIEENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSW 1824
             K+AI+RIAEKLR+LG+ E N++        H   AGEIF+P  Q LPK RVG+T+D+SW
Sbjct: 58   -KSAIQRIAEKLRSLGFTENNEKPQPQPDTKH---AGEIFVPLPQRLPKYRVGHTLDSSW 113

Query: 1823 STPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRR 1644
            STPENPVP PG+G AI+RF                     +EE+VPTLAEL++ + ELRR
Sbjct: 114  STPENPVPEPGTGRAIARFHELRREVKKQKELEKTGK---KEERVPTLAELSLGKGELRR 170

Query: 1643 IRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKT 1464
            +  VGI L+KKLK+G AGITEGIVNGIHE WRRSEVVKI CEDL ++NMKRTHD+LERKT
Sbjct: 171  LTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLERKT 230

Query: 1463 GGLVVWRSGSIIILYRGANYVYPYFL 1386
            GGLVVWRSGS I+LYRG NY YPYFL
Sbjct: 231  GGLVVWRSGSKIVLYRGVNYKYPYFL 256



 Score = 61.6 bits (148), Expect = 3e-06
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
 Frame = -2

Query: 1667 IPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRT 1488
            I + E   +RKVG+ +K  L +G  G+ +G +  +H  W+  E+VKI C + S   +++ 
Sbjct: 577  ITKEERYMLRKVGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQV 636

Query: 1487 HDLLERKTGGLVV----WRSGSIIILYRGANYVYPYFLTTNT 1374
               LE ++GG++V       G  II+YRG NY  P  L   T
Sbjct: 637  AQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQT 678


>ref|XP_010255197.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nelumbo nucifera]
          Length = 1034

 Score =  530 bits (1366), Expect(2) = 0.0
 Identities = 272/415 (65%), Positives = 317/415 (76%), Gaps = 5/415 (1%)
 Frame = -3

Query: 1300 SNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEPLPIDADLL 1121
            SN  A   LV GVGSP+KVRF L GE +  EEAD +LDGLGPRF DWWG +PLP+DADLL
Sbjct: 290  SNGIACPPLVHGVGSPDKVRFQLQGEIEFAEEADCLLDGLGPRFTDWWGYDPLPVDADLL 349

Query: 1120 PAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGLAASIVKLW 941
            PA+VPGYR+PFRLLPYGI+PKLT+DEMTILRRL RPLPCHFALGRN+ LQGLA S+VKLW
Sbjct: 350  PAVVPGYRKPFRLLPYGIQPKLTNDEMTILRRLSRPLPCHFALGRNRKLQGLAVSMVKLW 409

Query: 940  EKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLPPAVSTAIE 761
            EKCEIAKIAVKRGVQNTNS +MAEELKRLTGG LLSRD EFI  YRGKDFLPP+VSTAIE
Sbjct: 410  EKCEIAKIAVKRGVQNTNSELMAEELKRLTGGILLSRDVEFIVFYRGKDFLPPSVSTAIE 469

Query: 760  DRRKPRIHRDKHTTHGHSSTEISPSLASKAENSTSAGEF-----HEKSVRKERKPKSTNA 596
            +RRK    R K      S  +  P    K     SA +F      ++++  ++  +S+ +
Sbjct: 470  ERRKHGTGRSKQRVENSSLIDNMPETDIKTAGHPSANKFEGGYDQKRNLISDKTKESSKS 529

Query: 595  VMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLKKVGLRMKPF 416
             +   ++KL                       ++ E DREG+TEEERYML+KVGLRMKPF
Sbjct: 530  AIYRITTKLSLALEKKTKAEKLLADLEKAVEPQKQESDREGITEEERYMLRKVGLRMKPF 589

Query: 415  LLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGGILVAVERVD 236
            LLLGRRGVFDGT+ENMHLHWKYRELVK+++S R  EDV   A+TLEAESGGILVAVERV+
Sbjct: 590  LLLGRRGVFDGTVENMHLHWKYRELVKVISSERSIEDVQRTARTLEAESGGILVAVERVN 649

Query: 235  RGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLAQNID 71
            +G AIIVYRGKNYQRP DLRP+TLLNKK AMKRSLEAQR +SLKLH+L+L ++ID
Sbjct: 650  KGCAIIVYRGKNYQRPVDLRPRTLLNKKAAMKRSLEAQRHKSLKLHILRLTRDID 704



 Score =  289 bits (740), Expect(2) = 0.0
 Identities = 158/261 (60%), Positives = 181/261 (69%)
 Frame = -2

Query: 2171 MLLHQYHLSSPFPINTLNSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAETVSKTA 1992
            MLL  YHL   F   TL+S+  LF  S S K    F  P        S      TVSKTA
Sbjct: 1    MLLPPYHLIPSFSTKTLDSAP-LFFPSPSPKILI-FQNPKPPKFLLQSYAADVRTVSKTA 58

Query: 1991 IERIAEKLRNLGYIEENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSWSTPE 1812
            I+RI+EKLR+LGY+E+N    +    NH G+AGEIF+PF+  LPK RVGYTID+SWSTPE
Sbjct: 59   IQRISEKLRSLGYLEDNSRESQQPETNH-GSAGEIFIPFSHELPKYRVGYTIDSSWSTPE 117

Query: 1811 NPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRRIRKV 1632
            NPVP PGSG A+SRF                     +EE+ PTLAELTIP+ EL+R+  +
Sbjct: 118  NPVPHPGSGAALSRFQELKRKVEKQKRSTK------KEERAPTLAELTIPEQELKRLITI 171

Query: 1631 GIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTGGLV 1452
            GI LKKKLKVG AGITEGIVNGIHERWRRSE+VKI+ EDL  +NMKRTHD+LERKTGGLV
Sbjct: 172  GIGLKKKLKVGKAGITEGIVNGIHERWRRSELVKIRFEDLCSMNMKRTHDILERKTGGLV 231

Query: 1451 VWRSGSIIILYRGANYVYPYF 1389
            VWRSGS IILYRGANY YPYF
Sbjct: 232  VWRSGSTIILYRGANYEYPYF 252



 Score = 62.8 bits (151), Expect = 1e-06
 Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
 Frame = -2

Query: 1667 IPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRT 1488
            I + E   +RKVG+ +K  L +G  G+ +G V  +H  W+  E+VK+   + S  +++RT
Sbjct: 571  ITEEERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVISSERSIEDVQRT 630

Query: 1487 HDLLERKTGGLVV----WRSGSIIILYRGANYVYPYFLTTNT 1374
               LE ++GG++V       G  II+YRG NY  P  L   T
Sbjct: 631  ARTLEAESGGILVAVERVNKGCAIIVYRGKNYQRPVDLRPRT 672


>ref|XP_009614930.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana tomentosiformis]
          Length = 1051

 Score =  548 bits (1411), Expect(2) = 0.0
 Identities = 272/429 (63%), Positives = 338/429 (78%), Gaps = 3/429 (0%)
 Frame = -3

Query: 1348 TNLVCTDSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRF 1169
            TN    D++KS     S+R++   +++GVGSP++VRF LPGEA++ EEAD++L+GLGPRF
Sbjct: 291  TNSSDMDAIKSD---ASDRKSPTRVIQGVGSPDRVRFQLPGEAELTEEADKLLEGLGPRF 347

Query: 1168 IDWWGVEPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALG 989
             DWWG EPLPIDAD LPA+VPGY++PFRLLPYG+KPKLT+DEMT L+RLGRPLPCHFALG
Sbjct: 348  TDWWGCEPLPIDADFLPAVVPGYKKPFRLLPYGVKPKLTNDEMTTLKRLGRPLPCHFALG 407

Query: 988  RNKNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIAL 809
            RN+ LQGLAA+IVKLWEKCEIAK+AVKRGVQNTNS +MAEELK LTGGTLLSRDKEFI  
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKEFIVF 467

Query: 808  YRGKDFLPPAVSTAIEDRRKPRIHRDKHTTHGHS---STEISPSLASKAENSTSAGEFHE 638
            YRGKDFLP AVS+AI +RRK  +  +K ++   S   + E   S A    +   A +  +
Sbjct: 468  YRGKDFLPSAVSSAIAERRKQVVEEEKKSSFSSSVANTKERKKSTARSVSDDEHANQNDQ 527

Query: 637  KSVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEE 458
            K V +++K  S  A ++ T+ KL T                     ++P++D+EG+TEEE
Sbjct: 528  KGVHEKKKLTSMEAAIKRTADKLATAIEKKAKAEKLLVELEEDEMPQQPDMDKEGITEEE 587

Query: 457  RYMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLE 278
            R+ML+K+GLRMKPFLLLGRRGVFDGT+ENMHLHWKYRELVK++   +G E+V  +A+ LE
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKGIEEVNQIARMLE 647

Query: 277  AESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLH 98
            AESGGILVAVERV++GYAIIVYRGKNY+RPA LRPQTLL+K++AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 97   VLKLAQNID 71
            VLKLAQNI+
Sbjct: 708  VLKLAQNIE 716



 Score =  263 bits (673), Expect(2) = 0.0
 Identities = 144/274 (52%), Positives = 179/274 (65%), Gaps = 10/274 (3%)
 Frame = -2

Query: 2165 LHQYHLSSPFPINTLNSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAETVS---KT 1995
            L  +H  +P P   L  S +L  FS    T P   KPF + SS     T     S   ++
Sbjct: 5    LCNFHPLNP-PKTLLYPSPSLPFFST---THPLSLKPFFSRSSIPVFATSPNNTSPLPES 60

Query: 1994 AIERIAEKLRNLGYIEENKENPEHKI-------NNHTGTAGEIFLPFTQNLPKQRVGYTI 1836
            AI+RIA KLR+LGYI EN +N E  +       N ++ + G+IF+P    LPK RVG+T+
Sbjct: 61   AIQRIANKLRSLGYITENPKNQETTLEENSLSPNPNSSSPGQIFVPLPNQLPKYRVGHTL 120

Query: 1835 DTSWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQH 1656
            D SWSTPENPVP PG GN+I +F                     ++E+ P+LAELT+P  
Sbjct: 121  DVSWSTPENPVPHPGLGNSIQKFHELRSNFLKEKEKERLKNKDNKKERAPSLAELTLPAE 180

Query: 1655 ELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLL 1476
            ELRR+R +GI L+KKLK+G AGITEGIVNGIHERWRR E+VKI CEDL +LNMKRTH+LL
Sbjct: 181  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDLCRLNMKRTHELL 240

Query: 1475 ERKTGGLVVWRSGSIIILYRGANYVYPYFLTTNT 1374
            ERKTGGLV+WRSGS IILYRGA+Y YPYF  +N+
Sbjct: 241  ERKTGGLVIWRSGSNIILYRGADYKYPYFSESNS 274


>ref|XP_009762860.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana sylvestris]
          Length = 1051

 Score =  546 bits (1406), Expect(2) = 0.0
 Identities = 271/429 (63%), Positives = 338/429 (78%), Gaps = 3/429 (0%)
 Frame = -3

Query: 1348 TNLVCTDSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRF 1169
            TN    D++KS     S+R++   +++GVGSP++VRF LPGEA++ EEAD++L+GLGPRF
Sbjct: 291  TNSSDMDAIKSD---ASDRKSPTRVIQGVGSPDRVRFQLPGEAELTEEADKLLEGLGPRF 347

Query: 1168 IDWWGVEPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALG 989
             DWWG EPLPIDADLLPA+VPGY++PFRLLPYG+KPKLT+DEMT L+RLGRPLPCHFALG
Sbjct: 348  TDWWGCEPLPIDADLLPAVVPGYKKPFRLLPYGVKPKLTNDEMTTLKRLGRPLPCHFALG 407

Query: 988  RNKNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIAL 809
            RN+ LQGLAA+IVKLWEKCEIAK+AVKRGVQNTNS +MAEELK LTGGTLLSRDKEFI  
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKEFIVF 467

Query: 808  YRGKDFLPPAVSTAIEDRRKPRIHRDKHTTHGHS---STEISPSLASKAENSTSAGEFHE 638
            YRGKDFLP AVS+AI +RRK  +  +K ++   S   + E   S      +   A +  +
Sbjct: 468  YRGKDFLPSAVSSAIAERRKQVVEEEKKSSFSSSVANTKEQKKSTVRSVSDDEHANQNDQ 527

Query: 637  KSVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEE 458
            K V++++K  S  A ++ T+ KL T                     ++P++D+EG+TEEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLATAIEKKAKAEQLLVELEEDEMPQQPDLDKEGITEEE 587

Query: 457  RYMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLE 278
            R+ML+K+GLRMKPFLLLGRRGVFDGT+ENMHLHWKYRELVK++A  +  E+V  +A+ LE
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVIAGRKSIEEVNQIARMLE 647

Query: 277  AESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLH 98
            AESGGILVAVERV++GYAIIVYRGKNY+RPA LRPQTLL+K++AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 97   VLKLAQNID 71
            VLKL QNI+
Sbjct: 708  VLKLTQNIE 716



 Score =  261 bits (666), Expect(2) = 0.0
 Identities = 143/272 (52%), Positives = 182/272 (66%), Gaps = 13/272 (4%)
 Frame = -2

Query: 2165 LHQYHLSSPFPINTLNSSQNLFLFSKSNKTS--PNFSK----PFVTNSSNTSITTKAETV 2004
            L  +H  +P P   L  S +L  FS ++  S  P FS+     F T+ +NTS       +
Sbjct: 5    LCNFHPLNP-PKTLLYPSPSLPFFSTTHPLSLKPFFSRFSIPVFATSPNNTS------PL 57

Query: 2003 SKTAIERIAEKLRNLGYIEENKENPEHKI-------NNHTGTAGEIFLPFTQNLPKQRVG 1845
             ++AI+RIA KLR+LGYI EN +N E  +       N ++ + G+IF+P    LPK RVG
Sbjct: 58   PESAIQRIANKLRSLGYITENPKNQETTLEENSLSPNPNSSSPGQIFVPLPNQLPKYRVG 117

Query: 1844 YTIDTSWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTI 1665
            +T+D SWSTPENPVP+PG GN+I +F                     ++E+ P+LAELT+
Sbjct: 118  HTLDVSWSTPENPVPQPGLGNSIQKFHELRGNFLKEKEKERLKNKDSKKERAPSLAELTL 177

Query: 1664 PQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTH 1485
            P  ELRR+R +GI L+KKLK+G AGITEGIVNGIHERWRR E+VKI CEDL +LNMKRTH
Sbjct: 178  PDEELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDLCRLNMKRTH 237

Query: 1484 DLLERKTGGLVVWRSGSIIILYRGANYVYPYF 1389
            +LLERKTGGLV+WRSGS IILYRGA+Y YPYF
Sbjct: 238  ELLERKTGGLVIWRSGSNIILYRGADYKYPYF 269


>ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
            gi|223543418|gb|EEF44949.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1009

 Score =  540 bits (1392), Expect(2) = 0.0
 Identities = 277/429 (64%), Positives = 328/429 (76%), Gaps = 8/429 (1%)
 Frame = -3

Query: 1330 DSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGV 1151
            D VK   P  +N+    AL++GVG PN+VRF LPGEAQ+ EE D +L+GLGPRF DWWG 
Sbjct: 285  DGVKFSGPSPTNKAVRPALIQGVGLPNRVRFQLPGEAQLAEEVDSLLEGLGPRFSDWWGY 344

Query: 1150 EPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQ 971
            EPLP+DADLLPAIVPGY++PFRLLPYGIKP LT+DEMT L+RLGRPLPCHF LGRN+ LQ
Sbjct: 345  EPLPVDADLLPAIVPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQ 404

Query: 970  GLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDF 791
            GLAASI+KLWEKCEIAKIAVKRGVQNTNS MMAEELKRLTGGTLLSRD+EFI LYRGKDF
Sbjct: 405  GLAASIIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRDREFIVLYRGKDF 464

Query: 790  LPPAVSTAIEDRRKPRIHRDKHTTHGHSSTEI---SPSLASKAENSTSAGEFHEKS---- 632
            LP AVS+AI++RR    +  K  T   +S E    +  +     NS S  EFH  +    
Sbjct: 465  LPSAVSSAIKERRNHVFNVAKERTDNSTSAETAKEAEDVEDGTSNSGSQDEFHGNNEQSY 524

Query: 631  -VRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEER 455
             + K+RK   T   ++ TS +L                      +++PE+D+EG+T+EER
Sbjct: 525  DLSKQRKLSFTKEAIKRTSIRLSMALEKKAKAVKLLAEIENSEMSQQPEIDKEGITDEER 584

Query: 454  YMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEA 275
            YML+KVGL+MKPFLL+GRRGVFDGTIENMHLHWKYRELVKI+   R    V+ VA++LEA
Sbjct: 585  YMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEA 644

Query: 274  ESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHV 95
            ESGGILVAVERV +GYAI+VYRGKNYQRPA LRP TLL+K++AMKRSLEAQR ESLKLHV
Sbjct: 645  ESGGILVAVERVSKGYAIVVYRGKNYQRPALLRPPTLLSKREAMKRSLEAQRRESLKLHV 704

Query: 94   LKLAQNIDD 68
            L+L +NI+D
Sbjct: 705  LRLTRNIND 713



 Score =  263 bits (673), Expect(2) = 0.0
 Identities = 135/225 (60%), Positives = 161/225 (71%)
 Frame = -2

Query: 2048 TNSSNTSITTKAETVSKTAIERIAEKLRNLGYIEENKENPEHKINNHTGTAGEIFLPFTQ 1869
            + SS T   + ++TV  +AI+RIA+KLR+LG+ E N E             GEIF+P   
Sbjct: 37   SKSSITIHCSNSKTVPSSAIQRIADKLRSLGFAEHNPEPHTRNSAETKQREGEIFIPLPN 96

Query: 1868 NLPKQRVGYTIDTSWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKV 1689
             L K RVG+T+D SWSTPENPVPRPGSGNAI R+                     RE KV
Sbjct: 97   ELSKYRVGHTLDPSWSTPENPVPRPGSGNAILRYHELRKQVKKEREDKK------REAKV 150

Query: 1688 PTLAELTIPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLS 1509
            PTLAEL++ + ELRR+R++GI  K+KLKVG AGITEGIVNGIHERWRRSEVVKI CEDL 
Sbjct: 151  PTLAELSLSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLC 210

Query: 1508 KLNMKRTHDLLERKTGGLVVWRSGSIIILYRGANYVYPYFLTTNT 1374
            ++NMKRTHDLLERKTGGLVVWR+GS I+LYRG NY+YPYFL+ NT
Sbjct: 211  RMNMKRTHDLLERKTGGLVVWRAGSKIVLYRGVNYIYPYFLSDNT 255



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
 Frame = -2

Query: 1688 PTLAELTIPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLS 1509
            P + +  I   E   +RKVG+++K  L +G  G+ +G +  +H  W+  E+VKI C++ S
Sbjct: 572  PEIDKEGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERS 631

Query: 1508 KLNMKRTHDLLERKTGGLVV----WRSGSIIILYRGANYVYPYFLTTNT 1374
               +      LE ++GG++V       G  I++YRG NY  P  L   T
Sbjct: 632  LNAVHEVAQSLEAESGGILVAVERVSKGYAIVVYRGKNYQRPALLRPPT 680


>ref|XP_012082313.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Jatropha curcas]
            gi|643739679|gb|KDP45417.1| hypothetical protein
            JCGZ_09666 [Jatropha curcas]
          Length = 1142

 Score =  543 bits (1399), Expect(2) = 0.0
 Identities = 276/429 (64%), Positives = 329/429 (76%), Gaps = 8/429 (1%)
 Frame = -3

Query: 1330 DSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGV 1151
            +S++S     +N+     LV+GVGSP++VRF LPGEAQ+ EE D +LDGLGPRF DWWG 
Sbjct: 292  NSLRSSGSSETNKMVRPTLVQGVGSPDRVRFELPGEAQLAEEIDSLLDGLGPRFTDWWGY 351

Query: 1150 EPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQ 971
            EPLP+DADLLPAIVPGYR+PFRLLPYG+ PKLTDDEMT LRRLGRPLPCHFALGRN+ LQ
Sbjct: 352  EPLPVDADLLPAIVPGYRKPFRLLPYGVMPKLTDDEMTALRRLGRPLPCHFALGRNRKLQ 411

Query: 970  GLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDF 791
            GLAASIVKLWEKCEIAKIAVKRGVQNTNS MMAEELK LTGGTLLSRD+EFI LYRGKDF
Sbjct: 412  GLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKWLTGGTLLSRDREFIVLYRGKDF 471

Query: 790  LPPAVSTAIEDRRKPRIHRDKHTTH----GHSSTEIS----PSLASKAENSTSAGEFHEK 635
            LP AVS+ I++RRK  IH DK   H    G +  E       +++S + +  ++      
Sbjct: 472  LPSAVSSVIKERRKYLIHGDKQRRHQSIAGETLKEAEDIKIETISSGSNDEFNSDNEQSS 531

Query: 634  SVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEER 455
             + K++K +S  A ++ TS +L                       ++P +D+EG+TEEER
Sbjct: 532  DLLKDKKLRSLEAAIKRTSIRLSMALENKAKAEKLLAELENLEMPQQPAIDKEGITEEER 591

Query: 454  YMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEA 275
            YML+K+GL+MKPFLLLGRRGVFDGTIENMHLHWKYRELVKI+   R  E  Y VA+TLE 
Sbjct: 592  YMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKERSLEAAYEVARTLEV 651

Query: 274  ESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHV 95
            ESGGILVAVERV +GYAI+VYRGKNY+RPA LRP TLL+K++A+KRSLEAQR ESLKLHV
Sbjct: 652  ESGGILVAVERVSKGYAIVVYRGKNYRRPARLRPPTLLSKREALKRSLEAQRRESLKLHV 711

Query: 94   LKLAQNIDD 68
            LKL +N++D
Sbjct: 712  LKLTRNVND 720



 Score =  260 bits (665), Expect(2) = 0.0
 Identities = 146/271 (53%), Positives = 178/271 (65%), Gaps = 6/271 (2%)
 Frame = -2

Query: 2171 MLLHQYHLSSPFPINTLNS-SQNLFLFSKSN--KTSPNFSKPFVTNSSNTSITTKAETVS 2001
            MLL    L    P  TL+  S +LF  SK+   +   N  KPF+      S T  ++T+ 
Sbjct: 1    MLLSLPRLYPSPPSKTLHKPSSSLFSISKTLILQNPRNPLKPFI----RCSATPDSKTLP 56

Query: 2000 KTAIERIAEKLRNLGYIEENKENPE---HKINNHTGTAGEIFLPFTQNLPKQRVGYTIDT 1830
             +AI+RIA+KLR+LG+ E N + PE    ++   T   GEIF+P    LPK RVG+T+D 
Sbjct: 57   HSAIKRIADKLRSLGFTEHNPKLPETLNSELERETKQVGEIFIPLPNQLPKYRVGHTLDP 116

Query: 1829 SWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHEL 1650
            SWSTPENPVP PG+G AI+R+                     RE KVPTLA L++P  EL
Sbjct: 117  SWSTPENPVPIPGAGKAIARYHELRKEVKKEREAKK------REPKVPTLAVLSLPAEEL 170

Query: 1649 RRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLER 1470
            RR+R +GI  K+KLKVG AGITEGIVNGIHERWRR+EVVKI CEDL ++NMKRTHD+LER
Sbjct: 171  RRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRAEVVKIVCEDLCRMNMKRTHDMLER 230

Query: 1469 KTGGLVVWRSGSIIILYRGANYVYPYFLTTN 1377
            KTGGLVVWRSGS I+LYRG NY YPYF   N
Sbjct: 231  KTGGLVVWRSGSKIVLYRGVNYKYPYFSPNN 261


>ref|XP_012082320.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Jatropha curcas]
          Length = 1139

 Score =  543 bits (1399), Expect(2) = 0.0
 Identities = 276/429 (64%), Positives = 329/429 (76%), Gaps = 8/429 (1%)
 Frame = -3

Query: 1330 DSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGV 1151
            +S++S     +N+     LV+GVGSP++VRF LPGEAQ+ EE D +LDGLGPRF DWWG 
Sbjct: 292  NSLRSSGSSETNKMVRPTLVQGVGSPDRVRFELPGEAQLAEEIDSLLDGLGPRFTDWWGY 351

Query: 1150 EPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQ 971
            EPLP+DADLLPAIVPGYR+PFRLLPYG+ PKLTDDEMT LRRLGRPLPCHFALGRN+ LQ
Sbjct: 352  EPLPVDADLLPAIVPGYRKPFRLLPYGVMPKLTDDEMTALRRLGRPLPCHFALGRNRKLQ 411

Query: 970  GLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDF 791
            GLAASIVKLWEKCEIAKIAVKRGVQNTNS MMAEELK LTGGTLLSRD+EFI LYRGKDF
Sbjct: 412  GLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKWLTGGTLLSRDREFIVLYRGKDF 471

Query: 790  LPPAVSTAIEDRRKPRIHRDKHTTH----GHSSTEIS----PSLASKAENSTSAGEFHEK 635
            LP AVS+ I++RRK  IH DK   H    G +  E       +++S + +  ++      
Sbjct: 472  LPSAVSSVIKERRKYLIHGDKQRRHQSIAGETLKEAEDIKIETISSGSNDEFNSDNEQSS 531

Query: 634  SVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEER 455
             + K++K +S  A ++ TS +L                       ++P +D+EG+TEEER
Sbjct: 532  DLLKDKKLRSLEAAIKRTSIRLSMALENKAKAEKLLAELENLEMPQQPAIDKEGITEEER 591

Query: 454  YMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEA 275
            YML+K+GL+MKPFLLLGRRGVFDGTIENMHLHWKYRELVKI+   R  E  Y VA+TLE 
Sbjct: 592  YMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKERSLEAAYEVARTLEV 651

Query: 274  ESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHV 95
            ESGGILVAVERV +GYAI+VYRGKNY+RPA LRP TLL+K++A+KRSLEAQR ESLKLHV
Sbjct: 652  ESGGILVAVERVSKGYAIVVYRGKNYRRPARLRPPTLLSKREALKRSLEAQRRESLKLHV 711

Query: 94   LKLAQNIDD 68
            LKL +N++D
Sbjct: 712  LKLTRNVND 720



 Score =  260 bits (665), Expect(2) = 0.0
 Identities = 146/271 (53%), Positives = 178/271 (65%), Gaps = 6/271 (2%)
 Frame = -2

Query: 2171 MLLHQYHLSSPFPINTLNS-SQNLFLFSKSN--KTSPNFSKPFVTNSSNTSITTKAETVS 2001
            MLL    L    P  TL+  S +LF  SK+   +   N  KPF+      S T  ++T+ 
Sbjct: 1    MLLSLPRLYPSPPSKTLHKPSSSLFSISKTLILQNPRNPLKPFI----RCSATPDSKTLP 56

Query: 2000 KTAIERIAEKLRNLGYIEENKENPE---HKINNHTGTAGEIFLPFTQNLPKQRVGYTIDT 1830
             +AI+RIA+KLR+LG+ E N + PE    ++   T   GEIF+P    LPK RVG+T+D 
Sbjct: 57   HSAIKRIADKLRSLGFTEHNPKLPETLNSELERETKQVGEIFIPLPNQLPKYRVGHTLDP 116

Query: 1829 SWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHEL 1650
            SWSTPENPVP PG+G AI+R+                     RE KVPTLA L++P  EL
Sbjct: 117  SWSTPENPVPIPGAGKAIARYHELRKEVKKEREAKK------REPKVPTLAVLSLPAEEL 170

Query: 1649 RRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLER 1470
            RR+R +GI  K+KLKVG AGITEGIVNGIHERWRR+EVVKI CEDL ++NMKRTHD+LER
Sbjct: 171  RRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRAEVVKIVCEDLCRMNMKRTHDMLER 230

Query: 1469 KTGGLVVWRSGSIIILYRGANYVYPYFLTTN 1377
            KTGGLVVWRSGS I+LYRG NY YPYF   N
Sbjct: 231  KTGGLVVWRSGSKIVLYRGVNYKYPYFSPNN 261


>ref|XP_012082331.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Jatropha curcas]
          Length = 1097

 Score =  543 bits (1399), Expect(2) = 0.0
 Identities = 276/429 (64%), Positives = 329/429 (76%), Gaps = 8/429 (1%)
 Frame = -3

Query: 1330 DSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGV 1151
            +S++S     +N+     LV+GVGSP++VRF LPGEAQ+ EE D +LDGLGPRF DWWG 
Sbjct: 292  NSLRSSGSSETNKMVRPTLVQGVGSPDRVRFELPGEAQLAEEIDSLLDGLGPRFTDWWGY 351

Query: 1150 EPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQ 971
            EPLP+DADLLPAIVPGYR+PFRLLPYG+ PKLTDDEMT LRRLGRPLPCHFALGRN+ LQ
Sbjct: 352  EPLPVDADLLPAIVPGYRKPFRLLPYGVMPKLTDDEMTALRRLGRPLPCHFALGRNRKLQ 411

Query: 970  GLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDF 791
            GLAASIVKLWEKCEIAKIAVKRGVQNTNS MMAEELK LTGGTLLSRD+EFI LYRGKDF
Sbjct: 412  GLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKWLTGGTLLSRDREFIVLYRGKDF 471

Query: 790  LPPAVSTAIEDRRKPRIHRDKHTTH----GHSSTEIS----PSLASKAENSTSAGEFHEK 635
            LP AVS+ I++RRK  IH DK   H    G +  E       +++S + +  ++      
Sbjct: 472  LPSAVSSVIKERRKYLIHGDKQRRHQSIAGETLKEAEDIKIETISSGSNDEFNSDNEQSS 531

Query: 634  SVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEER 455
             + K++K +S  A ++ TS +L                       ++P +D+EG+TEEER
Sbjct: 532  DLLKDKKLRSLEAAIKRTSIRLSMALENKAKAEKLLAELENLEMPQQPAIDKEGITEEER 591

Query: 454  YMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEA 275
            YML+K+GL+MKPFLLLGRRGVFDGTIENMHLHWKYRELVKI+   R  E  Y VA+TLE 
Sbjct: 592  YMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKERSLEAAYEVARTLEV 651

Query: 274  ESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHV 95
            ESGGILVAVERV +GYAI+VYRGKNY+RPA LRP TLL+K++A+KRSLEAQR ESLKLHV
Sbjct: 652  ESGGILVAVERVSKGYAIVVYRGKNYRRPARLRPPTLLSKREALKRSLEAQRRESLKLHV 711

Query: 94   LKLAQNIDD 68
            LKL +N++D
Sbjct: 712  LKLTRNVND 720



 Score =  260 bits (665), Expect(2) = 0.0
 Identities = 146/271 (53%), Positives = 178/271 (65%), Gaps = 6/271 (2%)
 Frame = -2

Query: 2171 MLLHQYHLSSPFPINTLNS-SQNLFLFSKSN--KTSPNFSKPFVTNSSNTSITTKAETVS 2001
            MLL    L    P  TL+  S +LF  SK+   +   N  KPF+      S T  ++T+ 
Sbjct: 1    MLLSLPRLYPSPPSKTLHKPSSSLFSISKTLILQNPRNPLKPFI----RCSATPDSKTLP 56

Query: 2000 KTAIERIAEKLRNLGYIEENKENPE---HKINNHTGTAGEIFLPFTQNLPKQRVGYTIDT 1830
             +AI+RIA+KLR+LG+ E N + PE    ++   T   GEIF+P    LPK RVG+T+D 
Sbjct: 57   HSAIKRIADKLRSLGFTEHNPKLPETLNSELERETKQVGEIFIPLPNQLPKYRVGHTLDP 116

Query: 1829 SWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHEL 1650
            SWSTPENPVP PG+G AI+R+                     RE KVPTLA L++P  EL
Sbjct: 117  SWSTPENPVPIPGAGKAIARYHELRKEVKKEREAKK------REPKVPTLAVLSLPAEEL 170

Query: 1649 RRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLER 1470
            RR+R +GI  K+KLKVG AGITEGIVNGIHERWRR+EVVKI CEDL ++NMKRTHD+LER
Sbjct: 171  RRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRAEVVKIVCEDLCRMNMKRTHDMLER 230

Query: 1469 KTGGLVVWRSGSIIILYRGANYVYPYFLTTN 1377
            KTGGLVVWRSGS I+LYRG NY YPYF   N
Sbjct: 231  KTGGLVVWRSGSKIVLYRGVNYKYPYFSPNN 261


>ref|XP_008341495.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
            splicing facilitator CRS1, chloroplastic [Malus
            domestica]
          Length = 1090

 Score =  551 bits (1419), Expect(2) = 0.0
 Identities = 283/413 (68%), Positives = 328/413 (79%)
 Frame = -3

Query: 1312 LPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGVEPLPID 1133
            +P  S   A  ALV+GVG P +VRF LPGEAQ+ EE D ML+GLGPRF DWWG EPLPID
Sbjct: 305  VPSTSYERAQPALVQGVGLPGRVRFQLPGEAQLSEENDSMLEGLGPRFTDWWGCEPLPID 364

Query: 1132 ADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQGLAASI 953
            ADLLPAIVPGYR+PFRLLPYG+  KLTDDEMT +RRLGRPLPCHFALGRN+NLQGLAASI
Sbjct: 365  ADLLPAIVPGYRKPFRLLPYGLNSKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAASI 424

Query: 952  VKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDFLPPAVS 773
            VKLWEKCEIAKIAVKRGVQNTNS MMAEELKRLTGGTLL+RD+EFI LYRGKDFLPPAVS
Sbjct: 425  VKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLARDREFIVLYRGKDFLPPAVS 484

Query: 772  TAIEDRRKPRIHRDKHTTHGHSSTEISPSLASKAENSTSAGEFHEKSVRKERKPKSTNAV 593
            +AIE+RR+  I R + +T   +  ++ P   ++ EN     + H+  +   RK KST A 
Sbjct: 485  SAIEERRRHAI-RVERSTSVPTRQDLEP--RTEPENKHGWIBDHKMGLPSARKLKSTEAA 541

Query: 592  MENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLKKVGLRMKPFL 413
            ++ TS KL                       ++PE+D+EG+T+EERYML+KVGLRMKPFL
Sbjct: 542  VDRTSIKLSMALEKRVKAEKLLADLENAATPQQPEIDKEGITKEERYMLRKVGLRMKPFL 601

Query: 412  LLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGGILVAVERVDR 233
            L+GRRGVFDGTIENMHLHWKYRELVKI+++ +  E V+ VA+TLEAESGGILVAVERV +
Sbjct: 602  LMGRRGVFDGTIENMHLHWKYRELVKIISNEKSIETVHQVAQTLEAESGGILVAVERVSK 661

Query: 232  GYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLAQNI 74
            GYAIIVYRGKNY RPA LRPQTLL K++AMKRS+EAQR ESLKLHVLKL +NI
Sbjct: 662  GYAIIVYRGKNYSRPASLRPQTLLTKREAMKRSIEAQRRESLKLHVLKLNENI 714



 Score =  252 bits (644), Expect(2) = 0.0
 Identities = 144/269 (53%), Positives = 176/269 (65%), Gaps = 4/269 (1%)
 Frame = -2

Query: 2171 MLLHQYHLSS-PFPINTLNSSQNLFLFSKSNKTSPNF---SKPFVTNSSNTSITTKAETV 2004
            M L   HL++  FP  T+    +L  F    +T P+    S  F   SS     T A   
Sbjct: 5    MSLSATHLTTCRFPPKTITDHPSLSPFFSFPRTLPSQNPKSSKFTIRSSAADTKTLAP-- 62

Query: 2003 SKTAIERIAEKLRNLGYIEENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSW 1824
             K+AI+RIAEKLR+LG+ E   +NP+ + +  +  AGEIF+P  + LPK RVG+T+D SW
Sbjct: 63   -KSAIQRIAEKLRSLGFTEST-QNPDRQPDKKS--AGEIFVPIPEKLPKYRVGHTLDASW 118

Query: 1823 STPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRR 1644
            STPENPVP PG+G AI+RF                     +  +VPTLAEL++ + ELRR
Sbjct: 119  STPENPVPEPGTGGAIARFHELRREVKKQKELEREERKG-KGGRVPTLAELSLGKGELRR 177

Query: 1643 IRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKT 1464
            +  VG+ L+KKLK+G AGITEGIVNGIHE WRRSEVVKI CEDL +LNMKRTHDLLERKT
Sbjct: 178  LTTVGLGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRLNMKRTHDLLERKT 237

Query: 1463 GGLVVWRSGSIIILYRGANYVYPYFLTTN 1377
            GGLV WR+GS IILYRG NY YPYFL  N
Sbjct: 238  GGLVXWRAGSKIILYRGVNYKYPYFLRDN 266


>ref|XP_011098529.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 1054

 Score =  542 bits (1396), Expect(2) = 0.0
 Identities = 280/426 (65%), Positives = 331/426 (77%), Gaps = 4/426 (0%)
 Frame = -3

Query: 1333 TDSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWG 1154
            TD+V+S         +   L++GVG PN+VRF LPGEA++ +E D +L+GLGPRF DWWG
Sbjct: 299  TDAVESRRLNSGTHISHLPLIQGVGLPNRVRFQLPGEAELADEVDTLLEGLGPRFSDWWG 358

Query: 1153 VEPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNL 974
             +PLP+DADLLPA+VPGY+RPFRLLPYG+KPKLT+DEMT LRRLGRPLPCHFALGRN+ L
Sbjct: 359  CDPLPVDADLLPAVVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFALGRNRKL 418

Query: 973  QGLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKD 794
            QGLAA+IVKLWEKCEIAKIA+KRGVQNTNS +MAEELK LTGGTLLSRD EFIA YRGKD
Sbjct: 419  QGLAAAIVKLWEKCEIAKIAIKRGVQNTNSELMAEELKWLTGGTLLSRDNEFIAFYRGKD 478

Query: 793  FLPPAVSTAIEDRRKPRIHRDKHTTHGHS----STEISPSLASKAENSTSAGEFHEKSVR 626
            FLP AVS+AIE+RRK  I   K T  G+S    + EI       A  +    E ++KS  
Sbjct: 479  FLPAAVSSAIEERRKYGIDMSK-TRTGNSPILDAKEIKHGTKEYAAEAEHDEECNQKS-- 535

Query: 625  KERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYML 446
            +ERK K + A ME TS+KL                       + PE+D+EG+TEEERYML
Sbjct: 536  EERKLKFSQAAMERTSTKLSMALAKKARAEKLLAELEKEEMPQPPEIDKEGITEEERYML 595

Query: 445  KKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESG 266
            +KVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVK+    R  ++++ +A+TLEAESG
Sbjct: 596  RKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKVCIGRRNIKEIHEIARTLEAESG 655

Query: 265  GILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKL 86
            GILVAVERV +GYAIIVYRGKNY RPA LRPQTLL+K++AM+RSLEAQR ESLKLHVLKL
Sbjct: 656  GILVAVERVSKGYAIIVYRGKNYTRPASLRPQTLLSKREAMRRSLEAQRRESLKLHVLKL 715

Query: 85   AQNIDD 68
            ++NID+
Sbjct: 716  SRNIDE 721



 Score =  260 bits (665), Expect(2) = 0.0
 Identities = 137/235 (58%), Positives = 170/235 (72%), Gaps = 5/235 (2%)
 Frame = -2

Query: 2072 PNFS-KPFVTNSSNTSITTKAE--TVSKTAIERIAEKLRNLGYIEENK-ENPEHKINNHT 1905
            PNF  KPF   +S +   + A+  T+  +AI RIAEKLR+LGY+EE+  +N +  +    
Sbjct: 33   PNFLFKPFRRRASISVAASGADSQTLPASAIHRIAEKLRSLGYVEESSNDNDDETLPPGP 92

Query: 1904 GTAGEIFLPFTQNLPKQRVGYTIDTSWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXX 1725
             + GEIF+PF   LPK RVG+T+D SWSTPENP+P PGSGNAI RF              
Sbjct: 93   NSPGEIFIPFPTRLPKFRVGHTLDPSWSTPENPIPDPGSGNAIRRFHELRRGVLEEEEKE 152

Query: 1724 XXXXXKL-REEKVPTLAELTIPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWR 1548
                 +  ++E  P+LAELT+P+ ELRR+R +GI LKK+LK G AGITEGIVNGIHERWR
Sbjct: 153  RIRKRREGKKESAPSLAELTLPKDELRRLRSIGIGLKKELKAGKAGITEGIVNGIHERWR 212

Query: 1547 RSEVVKIKCEDLSKLNMKRTHDLLERKTGGLVVWRSGSIIILYRGANYVYPYFLT 1383
            RSE+VKI CED+ +LNMKRTH+LLERKTGGLV+WRSGS IILYRG++Y YPYFLT
Sbjct: 213  RSELVKITCEDICRLNMKRTHELLERKTGGLVIWRSGSNIILYRGSDYKYPYFLT 267



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 10/121 (8%)
 Frame = -2

Query: 1706 LREEKVPTLAELT---IPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEV 1536
            L +E++P   E+    I + E   +RKVG+ +K  L +G  G+ +G +  +H  W+  E+
Sbjct: 571  LEKEEMPQPPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYREL 630

Query: 1535 VKIKCEDLSKLNMKRTHDL---LERKTGGLVV----WRSGSIIILYRGANYVYPYFLTTN 1377
            VK+ C  + + N+K  H++   LE ++GG++V       G  II+YRG NY  P  L   
Sbjct: 631  VKV-C--IGRRNIKEIHEIARTLEAESGGILVAVERVSKGYAIIVYRGKNYTRPASLRPQ 687

Query: 1376 T 1374
            T
Sbjct: 688  T 688


>ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Solanum tuberosum]
          Length = 1049

 Score =  536 bits (1381), Expect(2) = 0.0
 Identities = 271/429 (63%), Positives = 332/429 (77%), Gaps = 3/429 (0%)
 Frame = -3

Query: 1348 TNLVCTDSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRF 1169
            TN   TD VK   P  S+R++   +++GVGSP++VRF LPGEA+  EEAD++L+GLGPRF
Sbjct: 291  TNSSGTDVVK---PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRF 347

Query: 1168 IDWWGVEPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALG 989
             DWWG EPLPIDADLLPAIVPGY+RPFRLLPYG+KPKLT+DEMT LRRLGRPLPCHF LG
Sbjct: 348  TDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLG 407

Query: 988  RNKNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIAL 809
            RN+ LQGLAA+IVKLWEKCEIAK+AVKRGVQNTNS +MAEELK LTGGTLLSRD+EFI  
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVF 467

Query: 808  YRGKDFLPPAVSTAIEDRRKPRIHRDKHTTHGHS---STEISPSLASKAENSTSAGEFHE 638
            YRGKDFLP AVS+AIE+RRK     +K      S   + E   S      +   A   ++
Sbjct: 468  YRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNNQ 527

Query: 637  KSVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEE 458
            K V++++K  S  A ++ T+ KL T                     ++ ++D+EG+TEEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGITEEE 587

Query: 457  RYMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLE 278
            R+ML+K+GLRMKPFLLLGRRGVFDGT+ENMHLHWKYRELVK++   +  E+V+ +A+ LE
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIARMLE 647

Query: 277  AESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLH 98
            AESGGILVAVE V++G+AIIVYRGKNY+RPA LRPQTLL+K++AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 97   VLKLAQNID 71
            VLKL QNI+
Sbjct: 708  VLKLTQNIE 716



 Score =  264 bits (674), Expect(2) = 0.0
 Identities = 141/260 (54%), Positives = 184/260 (70%), Gaps = 11/260 (4%)
 Frame = -2

Query: 2135 PINT----LNSSQNLFLFSKSNKTSPNFS-KPFVTNSSNTSITTKAET--VSKTAIERIA 1977
            PIN     LN S +  LFS    T+P+FS KPF   ++     T  +T  + ++AI RIA
Sbjct: 10   PINPSKTLLNPSPSHSLFS----TTPSFSLKPFFPRNTLPVFATSPDTEALPESAIRRIA 65

Query: 1976 EKLRNLGYIEE--NKENPEHKINNH--TGTAGEIFLPFTQNLPKQRVGYTIDTSWSTPEN 1809
            +KLR+LG++EE  N+E  E+ ++++    + G+IF+P    LPK RVG+T+DTSWSTPEN
Sbjct: 66   DKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPEN 125

Query: 1808 PVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRRIRKVG 1629
            PVP+PG GN+I +F                   + ++E+ P+LAELT+P  ELRR+R VG
Sbjct: 126  PVPQPGLGNSIQKFHELRDEFLKEKEKERLKNKEYKKERAPSLAELTLPAEELRRLRTVG 185

Query: 1628 IELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTGGLVV 1449
            I L+KKLK+G AGITEGIVNGIHERWRR E+VKI CED+ +LNMKRTH+LLE+KTGGLV+
Sbjct: 186  IALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMKRTHELLEKKTGGLVI 245

Query: 1448 WRSGSIIILYRGANYVYPYF 1389
            WRSGS IILYRGA+Y YPYF
Sbjct: 246  WRSGSNIILYRGADYKYPYF 265


>ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 878

 Score =  536 bits (1381), Expect(2) = 0.0
 Identities = 271/429 (63%), Positives = 332/429 (77%), Gaps = 3/429 (0%)
 Frame = -3

Query: 1348 TNLVCTDSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRF 1169
            TN   TD VK   P  S+R++   +++GVGSP++VRF LPGEA+  EEAD++L+GLGPRF
Sbjct: 291  TNSSGTDVVK---PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRF 347

Query: 1168 IDWWGVEPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALG 989
             DWWG EPLPIDADLLPAIVPGY+RPFRLLPYG+KPKLT+DEMT LRRLGRPLPCHF LG
Sbjct: 348  TDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLG 407

Query: 988  RNKNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIAL 809
            RN+ LQGLAA+IVKLWEKCEIAK+AVKRGVQNTNS +MAEELK LTGGTLLSRD+EFI  
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVF 467

Query: 808  YRGKDFLPPAVSTAIEDRRKPRIHRDKHTTHGHS---STEISPSLASKAENSTSAGEFHE 638
            YRGKDFLP AVS+AIE+RRK     +K      S   + E   S      +   A   ++
Sbjct: 468  YRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNNQ 527

Query: 637  KSVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEE 458
            K V++++K  S  A ++ T+ KL T                     ++ ++D+EG+TEEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGITEEE 587

Query: 457  RYMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLE 278
            R+ML+K+GLRMKPFLLLGRRGVFDGT+ENMHLHWKYRELVK++   +  E+V+ +A+ LE
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIARMLE 647

Query: 277  AESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLH 98
            AESGGILVAVE V++G+AIIVYRGKNY+RPA LRPQTLL+K++AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 97   VLKLAQNID 71
            VLKL QNI+
Sbjct: 708  VLKLTQNIE 716



 Score =  264 bits (674), Expect(2) = 0.0
 Identities = 141/260 (54%), Positives = 184/260 (70%), Gaps = 11/260 (4%)
 Frame = -2

Query: 2135 PINT----LNSSQNLFLFSKSNKTSPNFS-KPFVTNSSNTSITTKAET--VSKTAIERIA 1977
            PIN     LN S +  LFS    T+P+FS KPF   ++     T  +T  + ++AI RIA
Sbjct: 10   PINPSKTLLNPSPSHSLFS----TTPSFSLKPFFPRNTLPVFATSPDTEALPESAIRRIA 65

Query: 1976 EKLRNLGYIEE--NKENPEHKINNH--TGTAGEIFLPFTQNLPKQRVGYTIDTSWSTPEN 1809
            +KLR+LG++EE  N+E  E+ ++++    + G+IF+P    LPK RVG+T+DTSWSTPEN
Sbjct: 66   DKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPEN 125

Query: 1808 PVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRRIRKVG 1629
            PVP+PG GN+I +F                   + ++E+ P+LAELT+P  ELRR+R VG
Sbjct: 126  PVPQPGLGNSIQKFHELRDEFLKEKEKERLKNKEYKKERAPSLAELTLPAEELRRLRTVG 185

Query: 1628 IELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTGGLVV 1449
            I L+KKLK+G AGITEGIVNGIHERWRR E+VKI CED+ +LNMKRTH+LLE+KTGGLV+
Sbjct: 186  IALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMKRTHELLEKKTGGLVI 245

Query: 1448 WRSGSIIILYRGANYVYPYF 1389
            WRSGS IILYRGA+Y YPYF
Sbjct: 246  WRSGSNIILYRGADYKYPYF 265


>ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Solanum lycopersicum]
          Length = 1049

 Score =  541 bits (1395), Expect(2) = 0.0
 Identities = 272/429 (63%), Positives = 332/429 (77%), Gaps = 3/429 (0%)
 Frame = -3

Query: 1348 TNLVCTDSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRF 1169
            TN    D+VKS     S+R++   +++GVGSP++VRF LPGEA+  EEAD++L+GLGPRF
Sbjct: 291  TNSSGIDAVKSD---ASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRF 347

Query: 1168 IDWWGVEPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALG 989
             DWWG EPLPIDADLLPAIVPGY+RPFRLLPYG+KPKLT+DEMT LRRLGRPLPCHF LG
Sbjct: 348  TDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLG 407

Query: 988  RNKNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIAL 809
            RN+ LQGLAA+IVKLWEKCEIAK+AVKRGVQNTNS +M EELK LTGGTLLSRD+EFI  
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMVEELKWLTGGTLLSRDREFIVF 467

Query: 808  YRGKDFLPPAVSTAIEDRRKPRIHRDKHTTHGHSSTEISPSLASKAENSTSAGEFH---E 638
            YRGKDFLP AVS+AIE+RRK     +K      S         S  E+ +  G  H   +
Sbjct: 468  YRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTESVSDDGHAHRNNQ 527

Query: 637  KSVRKERKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEE 458
            K V++++K  S  A ++ T+ KL T                     ++ ++D+EG+TEEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLTTALEKKAEAEKLLLELEEDEVPQQSDMDKEGITEEE 587

Query: 457  RYMLKKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLE 278
            R+ML+K+GLRMKPFLLLGRRGVFDGT+ENMHLHWKYRELVK++   +  E+V+ +A+ LE
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKNIEEVHQIARMLE 647

Query: 277  AESGGILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLH 98
            AESGGILVAVERV++GYAIIVYRGKNY+RPA LRPQTLL+K++AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 97   VLKLAQNID 71
            VLKL QNI+
Sbjct: 708  VLKLTQNIE 716



 Score =  256 bits (653), Expect(2) = 0.0
 Identities = 136/259 (52%), Positives = 177/259 (68%), Gaps = 10/259 (3%)
 Frame = -2

Query: 2135 PINT----LNSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAET--VSKTAIERIAE 1974
            PIN     L  S +  LFS +   SP   KPF    S        +T  + ++AI RIA+
Sbjct: 10   PINPSKTLLKPSPSHSLFSSTPSLSP---KPFFPRDSLPVFAASPDTEALPESAIRRIAD 66

Query: 1973 KLRNLGYIEE--NKENPEHKINNH--TGTAGEIFLPFTQNLPKQRVGYTIDTSWSTPENP 1806
            KLR+LG++E+  N+E  E+ ++++    + G+IF+P    LPK RVG+T+DTSWSTPENP
Sbjct: 67   KLRSLGFVEQPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPENP 126

Query: 1805 VPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKVPTLAELTIPQHELRRIRKVGI 1626
            VP+PG G +I +F                   + ++E+ P+LAELT+P  ELRR+R VGI
Sbjct: 127  VPQPGLGKSIQKFHELRDEFLKEKDKERLKNKEYKKERAPSLAELTLPAEELRRLRTVGI 186

Query: 1625 ELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTGGLVVW 1446
             L+KKLK+G AGITEGIVNGIHERWRR E+VKI CED+ +LNMKRTH+LLE+KTGGLV+W
Sbjct: 187  ALRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDICRLNMKRTHELLEKKTGGLVIW 246

Query: 1445 RSGSIIILYRGANYVYPYF 1389
            RSGS IILYRGA+Y YPYF
Sbjct: 247  RSGSNIILYRGADYKYPYF 265


>ref|XP_010100925.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis] gi|587959642|gb|EXC45069.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 966

 Score =  536 bits (1380), Expect(2) = 0.0
 Identities = 276/425 (64%), Positives = 324/425 (76%), Gaps = 4/425 (0%)
 Frame = -3

Query: 1330 DSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGV 1151
            D V++  P   N+    +L++GVG PN+VRF LPGEAQ+ EEADR+LDGLGPRF DWWG 
Sbjct: 289  DGVETVAPTPGNKLVQPSLIQGVGLPNRVRFQLPGEAQLAEEADRLLDGLGPRFTDWWGY 348

Query: 1150 EPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQ 971
            +P P+DADLL  IV GYRRPFRLLPYG+ PKLTDDEMT LRRL RPLPCHFALGRN+NLQ
Sbjct: 349  DPQPVDADLLRPIVHGYRRPFRLLPYGVLPKLTDDEMTTLRRLARPLPCHFALGRNRNLQ 408

Query: 970  GLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDF 791
            GLA+S+VKLWEKCE+AKIA+KRGVQNTNS MMAEELK LTGGTLL+RD+EFI LYRGKDF
Sbjct: 409  GLASSVVKLWEKCEVAKIAIKRGVQNTNSEMMAEELKSLTGGTLLARDREFIVLYRGKDF 468

Query: 790  LPPAVSTAIEDRRKPRIHRDK-HTTHGHSSTEISPSLASKAENSTSAGEF--HEKSVRKE 620
            LP AVS+AIE+RRK  I   K  T H  S       L S    ++   E   H+K +  E
Sbjct: 469  LPSAVSSAIEERRKYVIQAKKLKTEHQTSVKTEQDQLGSVVCGASELREINGHKKRLPSE 528

Query: 619  -RKPKSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLK 443
             RKP      ++ TS KL                       ++PE+D+EG+T+EERYML+
Sbjct: 529  QRKPSVAETSVKGTSIKLSMALEKKAKAEQLLAELEKAESRQQPEIDKEGITKEERYMLR 588

Query: 442  KVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGG 263
            K+GLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVK++++ +  E V+ VA+TLEAESGG
Sbjct: 589  KIGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKVISNEKSIEAVHQVAQTLEAESGG 648

Query: 262  ILVAVERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLA 83
            ILVAVER  +GYAIIVYRGKNY+RPA LRPQTLL K+ AMKRS+EAQR +SLKLHVLKL 
Sbjct: 649  ILVAVERESKGYAIIVYRGKNYERPASLRPQTLLTKRAAMKRSIEAQRRQSLKLHVLKLT 708

Query: 82   QNIDD 68
            +NIDD
Sbjct: 709  KNIDD 713



 Score =  259 bits (662), Expect(2) = 0.0
 Identities = 146/257 (56%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
 Frame = -2

Query: 2147 SSPFPINTL-NSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAETVSKTAIERIAEK 1971
            +SP P   L + S  LF FS    T+P   K F   SSN    T    + K+AI+RI+EK
Sbjct: 10   TSPLPPKLLTHRSPPLFFFSSPFSTTPKPLK-FTVRSSNADAQT---LLPKSAIQRISEK 65

Query: 1970 LRNLGYIEENKENPEHKINNHTGTAGEIFLPFTQNLPKQRVGYTIDTSWSTPENPVPRPG 1791
            LR+LG+ +EN  +PE +      +AGEIF+P    LPKQRVG+TID SWS+PENPVP PG
Sbjct: 66   LRSLGFTDENP-SPEPE----RSSAGEIFVPLPHRLPKQRVGHTIDASWSSPENPVPEPG 120

Query: 1790 SGNAISRFXXXXXXXXXXXXXXXXXXXK-LREEK--VPTLAELTIPQHELRRIRKVGIEL 1620
            SG AI RF                      REE+  VPTLAEL +P  ELRR+R +GI L
Sbjct: 121  SGTAIKRFRELKTEVRRQRREERKESAANAREERERVPTLAELRLPPEELRRLRTLGIGL 180

Query: 1619 KKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMKRTHDLLERKTGGLVVWRS 1440
            +KK+KVG AGITEGIVNGIHERWR+SEVVKI+CED+ ++NMKRTHDLLE+KTGGLVVWRS
Sbjct: 181  RKKVKVGKAGITEGIVNGIHERWRQSEVVKIECEDICRMNMKRTHDLLEKKTGGLVVWRS 240

Query: 1439 GSIIILYRGANYVYPYF 1389
            GS I+LYRG  Y YPYF
Sbjct: 241  GSKIVLYRGIKYKYPYF 257


>gb|KCW56123.1| hypothetical protein EUGRSUZ_I01877 [Eucalyptus grandis]
          Length = 1070

 Score =  545 bits (1405), Expect(2) = 0.0
 Identities = 274/420 (65%), Positives = 324/420 (77%)
 Frame = -3

Query: 1330 DSVKSGLPIVSNREAGKALVKGVGSPNKVRFLLPGEAQILEEADRMLDGLGPRFIDWWGV 1151
            D V++  P  ++      L+ GVGSP+KVRF LPGE ++ EEA+++LDGLGPRF DWWG 
Sbjct: 300  DGVEATRPTPADEAGHPTLIYGVGSPDKVRFQLPGERELAEEAEQLLDGLGPRFADWWGY 359

Query: 1150 EPLPIDADLLPAIVPGYRRPFRLLPYGIKPKLTDDEMTILRRLGRPLPCHFALGRNKNLQ 971
            EPLP+DADLLPA+VPGYRRPFRLLPYG+KPKLT+DEMTILRRL RPLPC FALGRN+NLQ
Sbjct: 360  EPLPVDADLLPAVVPGYRRPFRLLPYGVKPKLTNDEMTILRRLSRPLPCQFALGRNRNLQ 419

Query: 970  GLAASIVKLWEKCEIAKIAVKRGVQNTNSLMMAEELKRLTGGTLLSRDKEFIALYRGKDF 791
            GLAASI+KLWEKCEIAKIAVKRGVQNTNS MMAEEL+RLTGGTLLSRD+EFI LYRGKD+
Sbjct: 420  GLAASIIKLWEKCEIAKIAVKRGVQNTNSEMMAEELRRLTGGTLLSRDREFIVLYRGKDY 479

Query: 790  LPPAVSTAIEDRRKPRIHRDKHTTHGHSSTEISPSLASKAENSTSAGEFHEKSVRKERKP 611
            LPPAVSTAIE+RRK  I  +K     H  T     L++  ++     +       +E+KP
Sbjct: 480  LPPAVSTAIEERRKGGIVMEKAVESRHGLT-----LSASGDDDADTDKQTRIPPSEEKKP 534

Query: 610  KSTNAVMENTSSKLFTVXXXXXXXXXXXXXXXXXXXAREPEVDREGVTEEERYMLKKVGL 431
             S   V+  T  KL                        +P+VD+EG+T+EERYML+KVGL
Sbjct: 535  VSVEGVIRTTGIKLSLALEKKAKAEKLLAELGNAENPEQPDVDKEGITQEERYMLRKVGL 594

Query: 430  RMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIMASARGREDVYGVAKTLEAESGGILVA 251
            RMKPF+L+GRRGV+ GT+ENMHLHWKYRELVKI+   +  E V+ +A+TLEAESGGILVA
Sbjct: 595  RMKPFVLMGRRGVYAGTVENMHLHWKYRELVKIICKEKSIESVHQIAQTLEAESGGILVA 654

Query: 250  VERVDRGYAIIVYRGKNYQRPADLRPQTLLNKKQAMKRSLEAQRCESLKLHVLKLAQNID 71
            VERV +GYAIIVYRGKNY+RPA +RP TLLNKK AMKRSLEAQR ESLKLHVLKL++NID
Sbjct: 655  VERVSKGYAIIVYRGKNYERPACIRPDTLLNKKAAMKRSLEAQRRESLKLHVLKLSENID 714



 Score =  248 bits (632), Expect(2) = 0.0
 Identities = 142/280 (50%), Positives = 179/280 (63%), Gaps = 14/280 (5%)
 Frame = -2

Query: 2171 MLLHQYHLS-----SPFPINTLNSSQNLFLFSKSNKTSPNFSKPFVTNSSNTSITTKAET 2007
            ML+ Q HL+     SPFP  TL    + F  +   +  P  S   +   S  +    A  
Sbjct: 1    MLVPQCHLNLHPPPSPFPPQTLAPPHSPFPAAPFLRNHPRPSTGLLPRFS-AAPRGDAAA 59

Query: 2006 VSKTAIERIAEKLRNLGYIEENK------ENPEHKINNHTGTAGEIFLPFTQNLPKQRVG 1845
            V ++AI+RIAEKLR+LG+ E +       + P  K +   G+AGEIF+P    LPK RVG
Sbjct: 60   VPQSAIQRIAEKLRSLGFKENDGGGGAGGDGPAPKPS--PGSAGEIFVPLPTRLPKHRVG 117

Query: 1844 YTIDTSWSTPENPVPRPGSGNAISRFXXXXXXXXXXXXXXXXXXXKLREEKV---PTLAE 1674
            +TIDTSWSTPENPVP PGSG  + R+                     REEK    PTLAE
Sbjct: 118  HTIDTSWSTPENPVPEPGSGGFVERYGQLRRKARKERDLERERGR--REEKAAAAPTLAE 175

Query: 1673 LTIPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLSKLNMK 1494
            L + + ELRR+R +G++L K+L++G AGITEGIVNGIHERWR++EVVKI CEDL +LNMK
Sbjct: 176  LRLSEEELRRLRGIGVKLNKRLRIGKAGITEGIVNGIHERWRKTEVVKITCEDLCRLNMK 235

Query: 1493 RTHDLLERKTGGLVVWRSGSIIILYRGANYVYPYFLTTNT 1374
            RTHDLLERKTGGLVVWRSG  ++LYRGA+Y YPYFL  ++
Sbjct: 236  RTHDLLERKTGGLVVWRSGGNMVLYRGADYRYPYFLADDS 275



 Score = 61.6 bits (148), Expect = 3e-06
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
 Frame = -2

Query: 1688 PTLAELTIPQHELRRIRKVGIELKKKLKVGVAGITEGIVNGIHERWRRSEVVKIKCEDLS 1509
            P + +  I Q E   +RKVG+ +K  + +G  G+  G V  +H  W+  E+VKI C++ S
Sbjct: 574  PDVDKEGITQEERYMLRKVGLRMKPFVLMGRRGVYAGTVENMHLHWKYRELVKIICKEKS 633

Query: 1508 KLNMKRTHDLLERKTGGLVV----WRSGSIIILYRGANYVYPYFLTTNT 1374
              ++ +    LE ++GG++V       G  II+YRG NY  P  +  +T
Sbjct: 634  IESVHQIAQTLEAESGGILVAVERVSKGYAIIVYRGKNYERPACIRPDT 682