BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00011603
         (1530 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010275247.1| PREDICTED: DNA-directed RNA polymerases IV a...   669   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              645   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerases IV a...   645   0.0  
ref|XP_009605686.1| PREDICTED: DNA-directed RNA polymerases IV a...   631   e-178
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...   629   e-177
ref|XP_009787512.1| PREDICTED: DNA-directed RNA polymerases IV a...   629   e-177
ref|XP_009787511.1| PREDICTED: DNA-directed RNA polymerases IV a...   629   e-177
gb|KDO52429.1| hypothetical protein CISIN_1g001050mg [Citrus sin...   627   e-177
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   620   e-174
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerases IV a...   620   e-174
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   615   e-173
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...   615   e-173
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...   613   e-172
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...   613   e-172
ref|XP_010325603.1| PREDICTED: DNA-directed RNA polymerases IV a...   612   e-172
ref|XP_012076429.1| PREDICTED: DNA-directed RNA polymerases IV a...   612   e-172
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerases IV a...   612   e-172
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   605   e-170
ref|XP_008379016.1| PREDICTED: DNA-directed RNA polymerases IV a...   604   e-170
ref|XP_009363651.1| PREDICTED: DNA-directed RNA polymerases IV a...   603   e-169

>ref|XP_010275247.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Nelumbo nucifera]
          Length = 1201

 Score =  669 bits (1726), Expect = 0.0
 Identities = 327/509 (64%), Positives = 398/509 (78%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT NL+ +DKFKSG++  +Q  V S+D   VV+GRIPVMV+S++CW+N L K+DCDFD 
Sbjct: 164  VYTVNLINSDKFKSGQDKIIQNDVKSDDNYVVVLGRIPVMVRSSLCWMNELGKSDCDFDH 223

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KG EK FIAQEQ+CL RLWV   P+W+V YRS+    K+RRV I++ + P  E 
Sbjct: 224  GGYFLIKGTEKTFIAQEQICLKRLWVSSKPSWMVSYRSNL---KKRRVYIKLIETPKPE- 279

Query: 1168 QYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNAE 989
             Y  GG VL ++F+S  IPLWI+FFALG SSDKEIV+ I++DISDA  VNILL+TI +A+
Sbjct: 280  -YLQGGNVLNVYFLSSTIPLWILFFALGASSDKEIVEMIDLDISDATFVNILLSTICDAD 338

Query: 988  KACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKYL 809
            + C+ F KE +ALK++D  IKNTKFPP + IE+++   LFP L+  ++KA+FLGYMVK L
Sbjct: 339  EKCEGFRKEGKALKHIDELIKNTKFPPTDSIEDILNNSLFPALSSYREKALFLGYMVKCL 398

Query: 808  FLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKPI 629
             L YTGRRKCENRDDFRNK               HI HA+R+M + MQKDLYGDR + PI
Sbjct: 399  LLSYTGRRKCENRDDFRNKRLELAGDLLERELRVHIRHAQRRMTKAMQKDLYGDRALHPI 458

Query: 628  DYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVGY 449
            ++YLDASIITNGL+RAFSTG W+HPF   E+++GVVA LRR NPLQM +D+RKTRQQV Y
Sbjct: 459  EHYLDASIITNGLTRAFSTGAWSHPFNTGERLSGVVATLRRTNPLQMTADMRKTRQQVQY 518

Query: 448  VGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGMEK 269
             GK GDARFPNPSHWGKLCFLSTPDGE CGLVKN+AITGLVSTN +EPL D L +CGMEK
Sbjct: 519  TGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNLAITGLVSTNSVEPLLDILLNCGMEK 578

Query: 268  LVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGEV 89
            LVD    AS  GKDKVF+NG+W+GVC DS  FV DL++ RRSK IP QVEIK D++ GEV
Sbjct: 579  LVDCNSPASVSGKDKVFLNGEWIGVCIDSAKFVRDLRNKRRSKEIPHQVEIKRDQQQGEV 638

Query: 88   RIFSDAGRILRPLLIVENIKKIKLVKGGY 2
            RIFSDAGRILRPLL+VEN++KIK  KGGY
Sbjct: 639  RIFSDAGRILRPLLVVENLRKIKEFKGGY 667


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  645 bits (1665), Expect = 0.0
 Identities = 311/512 (60%), Positives = 400/512 (78%), Gaps = 5/512 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHS-VQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFD 1352
            VYTQ L+++DK+K+GK++  V+K+VI ED RD++IGRIPVMVKS +CW+NG+++ DC++D
Sbjct: 195  VYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYD 254

Query: 1351 QGGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGE 1172
             GGYF++KGAEK FIAQEQ+CL RLWV  +PTW+V YR    + KR+RV ++++  P  +
Sbjct: 255  HGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRP---IWKRKRVYVKLE--PPKD 309

Query: 1171 DQYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            +    G KVLT++F S +IP+WI+FFALG SSDKE+VD I+ +I DA   NIL+A+I+ A
Sbjct: 310  ENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEA 369

Query: 991  EKACQA----FSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGY 824
            ++  +     F ++  A+ ++D  +K+ KFPP E I+E I KYLFP+ +G KQKA FLGY
Sbjct: 370  DREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGY 429

Query: 823  MVKYLFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDR 644
            MVK L   YTGRRKC+NRDDFRNK               HI HA+R+M + MQ++LYGDR
Sbjct: 430  MVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDR 489

Query: 643  PMKPIDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTR 464
             ++PI+ YLDASIITNGLSRAFSTG W+HPFK+ E+I+GVVA LRR NPLQM +D+RKTR
Sbjct: 490  DLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTR 549

Query: 463  QQVGYVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFD 284
            QQV Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+AITGLVST +++PL DKLFD
Sbjct: 550  QQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFD 609

Query: 283  CGMEKLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDR 104
            CGMEKLVDD  S    GK+KVF++GDWVGVC+D +SFV +L+  RR K +P QVEIK D 
Sbjct: 610  CGMEKLVDDT-STKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDE 668

Query: 103  KHGEVRIFSDAGRILRPLLIVENIKKIKLVKG 8
            + GEVRIFSDAGRILRPLL+VEN+KK+K  KG
Sbjct: 669  QQGEVRIFSDAGRILRPLLVVENLKKVKTFKG 700


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Vitis vinifera] gi|731386102|ref|XP_010648748.1|
            PREDICTED: DNA-directed RNA polymerases IV and V subunit
            2-like [Vitis vinifera]
          Length = 1198

 Score =  645 bits (1665), Expect = 0.0
 Identities = 311/512 (60%), Positives = 400/512 (78%), Gaps = 5/512 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHS-VQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFD 1352
            VYTQ L+++DK+K+GK++  V+K+VI ED RD++IGRIPVMVKS +CW+NG+++ DC++D
Sbjct: 159  VYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYD 218

Query: 1351 QGGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGE 1172
             GGYF++KGAEK FIAQEQ+CL RLWV  +PTW+V YR    + KR+RV ++++  P  +
Sbjct: 219  HGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRP---IWKRKRVYVKLE--PPKD 273

Query: 1171 DQYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            +    G KVLT++F S +IP+WI+FFALG SSDKE+VD I+ +I DA   NIL+A+I+ A
Sbjct: 274  ENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEA 333

Query: 991  EKACQA----FSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGY 824
            ++  +     F ++  A+ ++D  +K+ KFPP E I+E I KYLFP+ +G KQKA FLGY
Sbjct: 334  DREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGY 393

Query: 823  MVKYLFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDR 644
            MVK L   YTGRRKC+NRDDFRNK               HI HA+R+M + MQ++LYGDR
Sbjct: 394  MVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDR 453

Query: 643  PMKPIDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTR 464
             ++PI+ YLDASIITNGLSRAFSTG W+HPFK+ E+I+GVVA LRR NPLQM +D+RKTR
Sbjct: 454  DLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTR 513

Query: 463  QQVGYVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFD 284
            QQV Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+AITGLVST +++PL DKLFD
Sbjct: 514  QQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFD 573

Query: 283  CGMEKLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDR 104
            CGMEKLVDD  S    GK+KVF++GDWVGVC+D +SFV +L+  RR K +P QVEIK D 
Sbjct: 574  CGMEKLVDDT-STKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDE 632

Query: 103  KHGEVRIFSDAGRILRPLLIVENIKKIKLVKG 8
            + GEVRIFSDAGRILRPLL+VEN+KK+K  KG
Sbjct: 633  QQGEVRIFSDAGRILRPLLVVENLKKVKTFKG 664


>ref|XP_009605686.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Nicotiana tomentosiformis]
          Length = 1220

 Score =  631 bits (1627), Expect = e-178
 Identities = 308/509 (60%), Positives = 392/509 (77%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT+ L+++DKFK+G +  V K+   ED+RDV+IGRIPVMV S +CW+NG+DK DC+FD 
Sbjct: 185  VYTKKLVRSDKFKTGVDQFVDKECEMEDKRDVLIGRIPVMVNSELCWMNGVDKPDCEFDH 244

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQ+CL RLWV  SPTW V YR    V KR RV I++  A T + 
Sbjct: 245  GGYFIVKGAEKTFIAQEQICLKRLWVSNSPTWTVAYRP---VAKRNRVYIKL--AETLKL 299

Query: 1168 QYFHG-GKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            ++  G  K LT++F   ++P+WI+FFALG+SSD+E+VD I+VDI D   VNIL+A+I++A
Sbjct: 300  EHIKGVEKALTVYFSVAEMPIWILFFALGVSSDREVVDLIDVDIEDTNIVNILVASIHDA 359

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +K C+ F K ++AL Y+D  IK  +FPP E +EE I +YLFP+L+G KQKA FLGYMVK 
Sbjct: 360  DKKCEDFRKGKKALAYVDRLIKGCRFPPQESVEECIKQYLFPNLSGLKQKARFLGYMVKS 419

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   + GRRK +NRDDFRNK              AHI HA+R+M + MQ+DLYGDR ++P
Sbjct: 420  LLHAFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMLKAMQRDLYGDRQVQP 479

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA +RR NPLQM +D+RKTRQQV 
Sbjct: 480  IEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATIRRTNPLQMTADMRKTRQQVT 539

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A  GLVST +++PL + L+ CGM+
Sbjct: 540  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTILKPLLETLYRCGMQ 599

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            KLVDD+ + S  GK KV +NGDWVGVC+DS  FV+ L+  RR   +P QVE+K D + GE
Sbjct: 600  KLVDDS-AISLHGKQKVLLNGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQGE 658

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKGG 5
            VRIFSDAGRILRPLL+V N+KKIK +KGG
Sbjct: 659  VRIFSDAGRILRPLLVVSNLKKIKALKGG 687


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score =  629 bits (1622), Expect = e-177
 Identities = 305/508 (60%), Positives = 389/508 (76%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYTQ  + +DKFK+G+E  +QK+V+S++  D++IGRIPVMVKS++CW+ G++K DCDFD 
Sbjct: 158  VYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 217

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KGAEK F+AQEQ+CL RLWV  S  W V Y+S+   NKR R+ + + D    ED
Sbjct: 218  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE---NKRNRLIVRLVDMSKFED 274

Query: 1168 QYFHGG-KVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
                GG KVL+++F+S +IP+WI+FFALG+SSDKEIV+ I+    D   +NIL A+I++A
Sbjct: 275  --IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 332

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +  C  F K R ALKY+D  IK T FPP E  EE +  YLFP L+G KQKA FLGYMVK 
Sbjct: 333  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKC 392

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   Y+GRRKC+NRDDFRNK               HI HA+++MA+ +Q+DLYGDR ++P
Sbjct: 393  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 452

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I+YYLDASI+TNGLSRAFSTG W+HPFK++E+I+G+VANL R NPLQ   DLR+TRQQV 
Sbjct: 453  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 512

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+ +TGLVST+++EP+ ++LF+ GME
Sbjct: 513  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGME 572

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            KL DDA S S  GK KVFV+GDW+GVC DSLSFV++L+  RR K +P QVEIK D    E
Sbjct: 573  KLADDA-SYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 631

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKG 8
            VRIF DAGRILRPLL+VEN+ KIK ++G
Sbjct: 632  VRIFMDAGRILRPLLVVENMGKIKSLEG 659


>ref|XP_009787512.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 isoform X2
            [Nicotiana sylvestris]
          Length = 1216

 Score =  629 bits (1621), Expect = e-177
 Identities = 305/509 (59%), Positives = 392/509 (77%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT+ L+++DKFK+G +  V K+   ED+RDV+IGRIPVMV S +CW+NG+DK DC+FD 
Sbjct: 181  VYTKKLVRSDKFKTGVDQFVDKECEMEDKRDVLIGRIPVMVNSELCWMNGVDKPDCEFDH 240

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQ+CL RLWV  SPTW V YR    V KR RV I++  A T + 
Sbjct: 241  GGYFIVKGAEKTFIAQEQICLKRLWVSNSPTWTVAYRP---VAKRNRVYIKL--AETLKL 295

Query: 1168 QYFHGG-KVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            ++  G  K LT++F   ++P+WI+FFALG+SSD+E+V+ I+VDI D   VNIL+A+I++A
Sbjct: 296  EHIKGAEKALTVYFSVAEMPIWILFFALGVSSDREVVNLIDVDIEDTNIVNILVASIHDA 355

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +K C+ F K ++AL Y+D  IK  +FPP E +EE I +YLFP+L+G KQKA FLGYMVK 
Sbjct: 356  DKKCEDFRKGKKALAYVDRLIKGCRFPPQESVEECIQQYLFPNLSGLKQKARFLGYMVKS 415

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   + GRRK +NRDDFRNK              AHI HA+R+M + MQ+DLYGDR ++P
Sbjct: 416  LLHAFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMLKAMQRDLYGDRQVQP 475

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA +RR NPLQM +D+RKTRQQV 
Sbjct: 476  IEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATIRRTNPLQMTADMRKTRQQVT 535

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A  GLVST +++PL + L+ CGM+
Sbjct: 536  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTILKPLLETLYRCGMQ 595

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            KLVDD+ + S  GK KV +NGDWVG+C+DS  FV+ L+  RR   +P QVE+K D + GE
Sbjct: 596  KLVDDS-ATSLHGKQKVLLNGDWVGICEDSAFFVSKLRRKRRRNEVPHQVEVKRDEQQGE 654

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKGG 5
            VR+FSDAGRILRPLL+V N+KKIK +KGG
Sbjct: 655  VRMFSDAGRILRPLLVVSNLKKIKALKGG 683


>ref|XP_009787511.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 isoform X1
            [Nicotiana sylvestris]
          Length = 1226

 Score =  629 bits (1621), Expect = e-177
 Identities = 305/509 (59%), Positives = 392/509 (77%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT+ L+++DKFK+G +  V K+   ED+RDV+IGRIPVMV S +CW+NG+DK DC+FD 
Sbjct: 191  VYTKKLVRSDKFKTGVDQFVDKECEMEDKRDVLIGRIPVMVNSELCWMNGVDKPDCEFDH 250

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQ+CL RLWV  SPTW V YR    V KR RV I++  A T + 
Sbjct: 251  GGYFIVKGAEKTFIAQEQICLKRLWVSNSPTWTVAYRP---VAKRNRVYIKL--AETLKL 305

Query: 1168 QYFHGG-KVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            ++  G  K LT++F   ++P+WI+FFALG+SSD+E+V+ I+VDI D   VNIL+A+I++A
Sbjct: 306  EHIKGAEKALTVYFSVAEMPIWILFFALGVSSDREVVNLIDVDIEDTNIVNILVASIHDA 365

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +K C+ F K ++AL Y+D  IK  +FPP E +EE I +YLFP+L+G KQKA FLGYMVK 
Sbjct: 366  DKKCEDFRKGKKALAYVDRLIKGCRFPPQESVEECIQQYLFPNLSGLKQKARFLGYMVKS 425

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   + GRRK +NRDDFRNK              AHI HA+R+M + MQ+DLYGDR ++P
Sbjct: 426  LLHAFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMLKAMQRDLYGDRQVQP 485

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA +RR NPLQM +D+RKTRQQV 
Sbjct: 486  IEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATIRRTNPLQMTADMRKTRQQVT 545

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A  GLVST +++PL + L+ CGM+
Sbjct: 546  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTILKPLLETLYRCGMQ 605

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            KLVDD+ + S  GK KV +NGDWVG+C+DS  FV+ L+  RR   +P QVE+K D + GE
Sbjct: 606  KLVDDS-ATSLHGKQKVLLNGDWVGICEDSAFFVSKLRRKRRRNEVPHQVEVKRDEQQGE 664

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKGG 5
            VR+FSDAGRILRPLL+V N+KKIK +KGG
Sbjct: 665  VRMFSDAGRILRPLLVVSNLKKIKALKGG 693


>gb|KDO52429.1| hypothetical protein CISIN_1g001050mg [Citrus sinensis]
          Length = 1173

 Score =  627 bits (1617), Expect = e-177
 Identities = 304/508 (59%), Positives = 389/508 (76%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYTQ  + +DKFK+G+E  +QK+V+S++  +++IGRIPVMVKS++CW+ G++K DCDFD 
Sbjct: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KGAEK F+AQEQ+CL RLWV  S  W V Y+S+   NKR R+ + + D    ED
Sbjct: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE---NKRNRLIVRLVDMSKFED 249

Query: 1168 QYFHGG-KVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
                GG KVL+++F+S +IP+WI+FFALG+SSDKEIV+ I+    D   +NIL A+I++A
Sbjct: 250  --IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +  C  F K R ALKY+D  IK T FPP E  EE +  YLFP L+G KQKA FLGYMVK 
Sbjct: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKC 367

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   Y+GRRKC+NRDDFRNK               HI HA+++MA+ +Q+DLYGDR ++P
Sbjct: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 427

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I+YYLDASI+TNGLSRAFSTG W+HPFK++E+I+G+VANL R NPLQ   DLR+TRQQV 
Sbjct: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+ +TGLVST+++EP+ ++LF+ GME
Sbjct: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGME 547

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            KL DDA S S  GK KVFV+GDW+GVC DSLSFV++L+  RR K +P QVEIK D    E
Sbjct: 548  KLADDA-SYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKG 8
            VRIF DAGRILRPLL+VEN+ KIK ++G
Sbjct: 607  VRIFMDAGRILRPLLVVENMGKIKSLEG 634


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score =  620 bits (1599), Expect = e-174
 Identities = 301/508 (59%), Positives = 387/508 (76%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT+ L+++DKFK+G +  V K+   ED+RDV+IGRIPVMV S +CW+NG+DK DC+FD 
Sbjct: 183  VYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDH 242

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQLCL RLWV  +PTW+V YR      KR+RV I++ +  T + 
Sbjct: 243  GGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGE---KRKRVYIKLTE--TLKL 297

Query: 1168 QYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNAE 989
            ++  GG+     ++  ++P+W++FFALG+SSD+E+V+ I+VDI D   VNIL+A+I+ A+
Sbjct: 298  EHIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEAD 357

Query: 988  KACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKYL 809
            K C+ F K ++AL Y+D  IKN KFPP E +EE I  YLFP+L+G KQKA FLGYMVK L
Sbjct: 358  KNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCL 417

Query: 808  FLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKPI 629
               + GRRK +NRDDFRNK              AHI HA+R+M + MQ+DLYGDR ++PI
Sbjct: 418  LHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPI 477

Query: 628  DYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVGY 449
            ++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA LRR NPLQM +D+RK+RQQV Y
Sbjct: 478  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTY 537

Query: 448  VGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGMEK 269
             GK GDAR+P+PSHWGKLCFLSTPDGE CGLVKN+A  GLVST +++P  + LF CGM+K
Sbjct: 538  TGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQK 597

Query: 268  LVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGEV 89
            LVDD  + S  GK KV ++G+WVGVC+DS  FV+ L+  RR   +P QVE+K D   GEV
Sbjct: 598  LVDDC-ATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 656

Query: 88   RIFSDAGRILRPLLIVENIKKIKLVKGG 5
            RIFSD+GRILRPLL+V N+KKIK +KGG
Sbjct: 657  RIFSDSGRILRPLLVVSNLKKIKALKGG 684


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Solanum
            lycopersicum]
          Length = 1217

 Score =  620 bits (1598), Expect = e-174
 Identities = 302/508 (59%), Positives = 386/508 (75%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT+ L+++DKFK+G +  V K+   ED+RDV+IGRIPVMV S +CW+NG+DK DC+FD 
Sbjct: 183  VYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDH 242

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQLCL RLWV  +PTW+V YR      KR+RV I++ +  T + 
Sbjct: 243  GGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGE---KRKRVYIKLTE--TLKL 297

Query: 1168 QYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNAE 989
            ++  GG+     ++  ++P+W++FFALG+SSD+E+V+ I+VDI D   VNIL+A+I+ A+
Sbjct: 298  EHIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEAD 357

Query: 988  KACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKYL 809
            K C+ F K ++AL Y+D  IKN KFPP E +EE I  YLFP+L+G KQKA FLGYMVK L
Sbjct: 358  KNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCL 417

Query: 808  FLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKPI 629
               + GRRK +NRDDFRNK              AHI HA+R+M + MQ+DLYGDR ++PI
Sbjct: 418  LHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPI 477

Query: 628  DYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVGY 449
            ++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA LRR NPLQM +D+RK+RQQV Y
Sbjct: 478  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTY 537

Query: 448  VGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGMEK 269
             GK GDAR+P+PSHWGKLCFLSTPDGE CGLVKN+A  GLVST +++P  + LF CGM+K
Sbjct: 538  TGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQK 597

Query: 268  LVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGEV 89
            LVDD  S S  GK KV ++G+WVGVC+DS  FV+ L+  RR   +P QVE+K D   GEV
Sbjct: 598  LVDDC-STSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 656

Query: 88   RIFSDAGRILRPLLIVENIKKIKLVKGG 5
            RIFSD GRILRPLL+V N+KKIK +KGG
Sbjct: 657  RIFSDPGRILRPLLVVSNLKKIKALKGG 684


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  615 bits (1587), Expect = e-173
 Identities = 300/508 (59%), Positives = 384/508 (75%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT+ L+++DKFK+G +  V K+   E +RDV+IGRIPVMV S +CW+NG+DK DC+FD 
Sbjct: 177  VYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDH 236

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+ KGAEK FIAQEQLCL RLWV  +PTW+V YR      KR+RV I++ +  T + 
Sbjct: 237  GGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGE---KRKRVYIKLTE--TLKL 291

Query: 1168 QYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNAE 989
            ++  GG+     ++  ++P+W++FFALG+SSD+E+V+ I+VDI D   VNIL+A+I+ A+
Sbjct: 292  EHIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEAD 351

Query: 988  KACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKYL 809
            K C+ F K ++AL Y+D  IKN KFPP E +EE I  YLFP+L+G KQKA FLGYMVK L
Sbjct: 352  KNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCL 411

Query: 808  FLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKPI 629
               + GRRK +NRDDFRNK              AHI HA+R+M + MQ+DLYGDR ++PI
Sbjct: 412  LHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPI 471

Query: 628  DYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVGY 449
            ++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA LRR NPLQM +D+RK+RQQV Y
Sbjct: 472  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTY 531

Query: 448  VGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGMEK 269
             GK GDAR+P+PSHWGKLCFLSTPDGE CGLVKN+A  GLVST +++P  + LF CGM+K
Sbjct: 532  TGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQK 591

Query: 268  LVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGEV 89
            LVDD  S S  GK KV ++G+WVGVC+DS  FV+ L+  RR   +P QVE+K D   GEV
Sbjct: 592  LVDDC-STSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 650

Query: 88   RIFSDAGRILRPLLIVENIKKIKLVKGG 5
            RIFSD GRILRPLL+V N+KKIK +KGG
Sbjct: 651  RIFSDPGRILRPLLVVSNLKKIKALKGG 678


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score =  615 bits (1585), Expect = e-173
 Identities = 299/509 (58%), Positives = 390/509 (76%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            V+T+ L+++DKFK+G E  V K+ + ED+RDV IGRIPVMV S +CW++G D+ DCDFD 
Sbjct: 181  VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDH 240

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQ+CL RLWV    TW+V YRS     KR RV +++ +  T + 
Sbjct: 241  GGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGE---KRNRVYLKLTE--TLKH 295

Query: 1168 QYFHG-GKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            ++  G  K L+++F++ ++P+W++FFALG+SSD+EIVD I+VDI D   +NIL+A+I++A
Sbjct: 296  EHIKGEAKALSVYFLA-EMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDA 354

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +K C+ F K ++AL Y+D  IK+ KFPP E +EE I +YLFP+L+G KQKA FLGYMVK 
Sbjct: 355  DKNCEDFRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKC 414

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L L Y GRRK +NRDDFRNK              AHI HA+R+M + +Q+DL GDR ++P
Sbjct: 415  LLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQP 474

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            +++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA LRR NPLQM +DLRKTRQQV 
Sbjct: 475  LEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVT 534

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A  GLVST +++PL + LF CGM+
Sbjct: 535  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQ 594

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            KLVDD+ + S  GK KV ++GDWVGVC+DS  FV+ L+  RR   +P QVE+K D +  E
Sbjct: 595  KLVDDS-ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDE 653

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKGG 5
            VRIFSDAGRI+RPLL+V N+K IK +K G
Sbjct: 654  VRIFSDAGRIMRPLLVVSNLKNIKSLKDG 682


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1073

 Score =  613 bits (1580), Expect = e-172
 Identities = 297/508 (58%), Positives = 383/508 (75%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT   +K+DKFK+G+E  V+++V+ +D RD++IGRIPVMV+S++CW+N ++K DCDFD 
Sbjct: 148  VYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCDFDH 207

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KG EK FIAQEQ+ + RLW+  S  W + YRS+    KR R+ I + +    + 
Sbjct: 208  GGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEV---KRNRLIIRLVE--NSKV 262

Query: 1168 QYFHGG-KVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            +Y  GG KVLT++F+S +IP+W++FFALG+SSDKE+V+ I+ + +D+   NIL A+I NA
Sbjct: 263  EYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNA 322

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +  C  F + R A+ Y+   +K+T+FPP E IEE +  YLFP L   KQKA FLGYMVK 
Sbjct: 323  DGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKC 382

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   YTGR KC+NRDDFRNK               HI HA+R+MA+ +Q+DLY DR ++P
Sbjct: 383  LLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRP 442

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I++YLDASI+TNGLSRAFSTG W+HP+K+ E+I+GVVANL R NPLQ   DLRKTRQQV 
Sbjct: 443  IEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQ 502

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A TGLVSTN+ME + DKLFD GME
Sbjct: 503  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGME 562

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            +LV+D  S S  GKDKVF+NG+WVGVC+DSLSF  +++  RRSK  P QVEIK D   GE
Sbjct: 563  ELVNDTCS-SLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGE 621

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKG 8
            VRIFSD GRILRPLL+V+N+ +IK  KG
Sbjct: 622  VRIFSDGGRILRPLLVVDNLNRIKAFKG 649


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  613 bits (1580), Expect = e-172
 Identities = 297/508 (58%), Positives = 383/508 (75%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYT   +K+DKFK+G+E  V+++V+ +D RD++IGRIPVMV+S++CW+N ++K DCDFD 
Sbjct: 148  VYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCDFDH 207

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KG EK FIAQEQ+ + RLW+  S  W + YRS+    KR R+ I + +    + 
Sbjct: 208  GGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEV---KRNRLIIRLVE--NSKV 262

Query: 1168 QYFHGG-KVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
            +Y  GG KVLT++F+S +IP+W++FFALG+SSDKE+V+ I+ + +D+   NIL A+I NA
Sbjct: 263  EYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNA 322

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            +  C  F + R A+ Y+   +K+T+FPP E IEE +  YLFP L   KQKA FLGYMVK 
Sbjct: 323  DGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKC 382

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   YTGR KC+NRDDFRNK               HI HA+R+MA+ +Q+DLY DR ++P
Sbjct: 383  LLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRP 442

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I++YLDASI+TNGLSRAFSTG W+HP+K+ E+I+GVVANL R NPLQ   DLRKTRQQV 
Sbjct: 443  IEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQ 502

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A TGLVSTN+ME + DKLFD GME
Sbjct: 503  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGME 562

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            +LV+D  S S  GKDKVF+NG+WVGVC+DSLSF  +++  RRSK  P QVEIK D   GE
Sbjct: 563  ELVNDTCS-SLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGE 621

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKG 8
            VRIFSD GRILRPLL+V+N+ +IK  KG
Sbjct: 622  VRIFSDGGRILRPLLVVDNLNRIKAFKG 649


>ref|XP_010325603.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            isoform X1 [Solanum lycopersicum]
          Length = 1225

 Score =  612 bits (1577), Expect = e-172
 Identities = 298/508 (58%), Positives = 383/508 (75%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            V+T+ L+++DKFK+G E  V K+ + ED+RDV IGRIPVMV S +CW++G D+ DC+FD 
Sbjct: 187  VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDH 246

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQ+CL RLWV    TW+V YRS     KR RV +++ +    E 
Sbjct: 247  GGYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGE---KRNRVYLKLTETLKHE- 302

Query: 1168 QYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNAE 989
            Q     K L+++F++ ++P+W++FFALG+SSD+E+VD I+VDI D + +NIL+A+I++A+
Sbjct: 303  QIKGEAKSLSVYFLA-EMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDAD 361

Query: 988  KACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKYL 809
            K C+ F K + AL Y+D  IK+ KFPP E +EE I +YLFP+L+G KQKA FLGYMVK L
Sbjct: 362  KNCEDFRKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCL 421

Query: 808  FLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKPI 629
             L Y GRRK +NRDDFRNK               HI HA+R+M + +Q+DL GDR + PI
Sbjct: 422  LLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPI 481

Query: 628  DYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVGY 449
            ++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA LRR NPLQM +DLRKTRQQV Y
Sbjct: 482  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTY 541

Query: 448  VGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGMEK 269
             GK GDAR+PNPSHWGK+CFLSTPDGE CGLVKN+A  GLVST ++ PL + LF CGM+K
Sbjct: 542  TGKVGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMPLLETLFRCGMQK 601

Query: 268  LVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGEV 89
            LVDD  + S  GK KV ++GDWVGVC+DS  FV+ L+  RR   +P QVE+K D +  EV
Sbjct: 602  LVDDC-ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEV 660

Query: 88   RIFSDAGRILRPLLIVENIKKIKLVKGG 5
            RIFSDAGRI+RPLL+V N+K IK + GG
Sbjct: 661  RIFSDAGRIMRPLLVVSNLKNIKALNGG 688


>ref|XP_012076429.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Jatropha curcas] gi|802626342|ref|XP_012076430.1|
            PREDICTED: DNA-directed RNA polymerases IV and V subunit
            2-like [Jatropha curcas] gi|643724314|gb|KDP33515.1|
            hypothetical protein JCGZ_07086 [Jatropha curcas]
          Length = 1209

 Score =  612 bits (1577), Expect = e-172
 Identities = 300/509 (58%), Positives = 385/509 (75%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VYTQ ++++DKFK+GK+  V K V+S D RD++IGRIPVMVKS++CW+   +++DCDFD 
Sbjct: 174  VYTQKVIRSDKFKTGKDQFVDKVVLSTDNRDIIIGRIPVMVKSDLCWMKTAERSDCDFDH 233

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KGAEK FIAQEQ+CL RLW+    +W V Y+S+    KR R+ + + D    ED
Sbjct: 234  GGYFLIKGAEKVFIAQEQVCLKRLWISNIQSWTVSYKSEI---KRNRLIVRLVDLSKVED 290

Query: 1168 QYFHGGKV-LTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
                G K  L ++F+S +IPLWI+FFALG++SDKE++D I+ +  DA  VNI  A+I++A
Sbjct: 291  --IKGEKKGLNVYFLSTEIPLWILFFALGITSDKEVIDLIDYNTEDASIVNIFFASIHDA 348

Query: 991  EKACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKY 812
            ++ C+ F  +REAL Y+  QI+ T+FPP  E E+ I  YLFP L+ P+QKA FLGYMVK 
Sbjct: 349  DEKCEGFRNDREALGYVIKQIQGTRFPP-GETEDCISLYLFPSLHSPRQKARFLGYMVKC 407

Query: 811  LFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKP 632
            L   Y+G+RKC+NRD FRNK               HI HA+R+MA+ +QKDLYGDR ++P
Sbjct: 408  LLQAYSGQRKCDNRDSFRNKRFELAGELLDRELKVHIAHARRRMAKALQKDLYGDRDVRP 467

Query: 631  IDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVG 452
            I++YLDASI+TNGLSRAFSTG W+HPFK+ E+I+GVVANL R NPLQ   DLRKTRQQV 
Sbjct: 468  IEHYLDASIVTNGLSRAFSTGAWSHPFKRMERISGVVANLGRTNPLQTMVDLRKTRQQVQ 527

Query: 451  YVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGME 272
            Y GK GDAR+P+PSHWG++CFLSTPDGE CGLVKN+AITGLVST ++EPL D LFDCGM+
Sbjct: 528  YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAITGLVSTEILEPLIDILFDCGMD 587

Query: 271  KLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGE 92
            KLVDD  +     K KVF+NG+WVGVC+DS  FV +L+  RR K++P QVEIK D +  E
Sbjct: 588  KLVDDTHT-KLDEKYKVFLNGEWVGVCEDSNLFVAELRRLRRRKKLPRQVEIKRDEQQKE 646

Query: 91   VRIFSDAGRILRPLLIVENIKKIKLVKGG 5
            VRIF+DAGRILRPLL+VEN+ KIK  KGG
Sbjct: 647  VRIFADAGRILRPLLVVENLHKIKAFKGG 675


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            isoform X2 [Solanum lycopersicum]
          Length = 1219

 Score =  612 bits (1577), Expect = e-172
 Identities = 298/508 (58%), Positives = 383/508 (75%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            V+T+ L+++DKFK+G E  V K+ + ED+RDV IGRIPVMV S +CW++G D+ DC+FD 
Sbjct: 181  VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDH 240

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF+VKGAEK FIAQEQ+CL RLWV    TW+V YRS     KR RV +++ +    E 
Sbjct: 241  GGYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGE---KRNRVYLKLTETLKHE- 296

Query: 1168 QYFHGGKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNAE 989
            Q     K L+++F++ ++P+W++FFALG+SSD+E+VD I+VDI D + +NIL+A+I++A+
Sbjct: 297  QIKGEAKSLSVYFLA-EMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDAD 355

Query: 988  KACQAFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKYL 809
            K C+ F K + AL Y+D  IK+ KFPP E +EE I +YLFP+L+G KQKA FLGYMVK L
Sbjct: 356  KNCEDFRKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCL 415

Query: 808  FLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKPI 629
             L Y GRRK +NRDDFRNK               HI HA+R+M + +Q+DL GDR + PI
Sbjct: 416  LLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPI 475

Query: 628  DYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVGY 449
            ++YLDASIITNGLSRAFSTGHW HP+K+ E+++GVVA LRR NPLQM +DLRKTRQQV Y
Sbjct: 476  EHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTY 535

Query: 448  VGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGMEK 269
             GK GDAR+PNPSHWGK+CFLSTPDGE CGLVKN+A  GLVST ++ PL + LF CGM+K
Sbjct: 536  TGKVGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMPLLETLFRCGMQK 595

Query: 268  LVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGEV 89
            LVDD  + S  GK KV ++GDWVGVC+DS  FV+ L+  RR   +P QVE+K D +  EV
Sbjct: 596  LVDDC-ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEV 654

Query: 88   RIFSDAGRILRPLLIVENIKKIKLVKGG 5
            RIFSDAGRI+RPLL+V N+K IK + GG
Sbjct: 655  RIFSDAGRIMRPLLVVSNLKNIKALNGG 682


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  605 bits (1559), Expect = e-170
 Identities = 296/489 (60%), Positives = 373/489 (76%)
 Frame = -3

Query: 1471 VQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQGGYFVVKGAEKAFIAQEQL 1292
            V K  ISED RDV+IGRIPVM+KS++CW+NG++K+DCDFD GGYF++KGAEK FIAQEQ+
Sbjct: 3    VDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQI 62

Query: 1291 CLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGEDQYFHGGKVLTMHFMSCKIP 1112
            CL RLWV  SP+W V YR   +V+KR+RV I+++  P   +    G KVL+++F + + P
Sbjct: 63   CLKRLWVSNSPSWTVAYR---DVSKRKRVYIKLE--PPKREHIRGGEKVLSVYFSAVEFP 117

Query: 1111 LWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNAEKACQAFSKEREALKYMDGQ 932
            +WI+FFALG SSDKE+V+ I+ D  D+R VN+L+A+I +A++ C+ F + R A+  +  +
Sbjct: 118  IWILFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKK 177

Query: 931  IKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGYMVKYLFLCYTGRRKCENRDDFRNK 752
            I+N KFPP E IE  +  YLFP+L+G +QKA FLGYMVK L   YTGRRK +NRDDFRNK
Sbjct: 178  IENCKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNK 237

Query: 751  XXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDRPMKPIDYYLDASIITNGLSRAFST 572
                           H+ HA+R+M + MQ+DLYG+R +  I++YLDASIITNGLSRAFST
Sbjct: 238  RLELAGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFST 297

Query: 571  GHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTRQQVGYVGKGGDARFPNPSHWGKLC 392
            G W+HP+KK E+I+GVVA LRR NPLQ  +D+RKTRQQV Y GK GDAR+P+PSHWGK+C
Sbjct: 298  GAWSHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKIC 357

Query: 391  FLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFDCGMEKLVDDAFSASWKGKDKVFVN 212
            FLSTPDGE CGLVKN+AITGLVSTN+ E   DKL D GMEKLVDD  S    GK KVF++
Sbjct: 358  FLSTPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDT-STLLSGKVKVFLD 416

Query: 211  GDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDRKHGEVRIFSDAGRILRPLLIVENI 32
            G+WVGVC DS+SFV  L+  RR K +P QVEIK D +H EVR+FSDAGRILRPLL+VEN+
Sbjct: 417  GNWVGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENL 476

Query: 31   KKIKLVKGG 5
             KIK  KGG
Sbjct: 477  GKIKASKGG 485


>ref|XP_008379016.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Malus domestica] gi|657945275|ref|XP_008379020.1|
            PREDICTED: DNA-directed RNA polymerases IV and V subunit
            2-like [Malus domestica]
          Length = 1203

 Score =  604 bits (1558), Expect = e-170
 Identities = 302/513 (58%), Positives = 382/513 (74%), Gaps = 5/513 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VY Q L+ +DKFK+GKE  + K+++S D RD+ +G +PVMVKS++CW+  ++K DCDFD 
Sbjct: 163  VYNQRLVSSDKFKTGKERFLDKEILSTDTRDITVGSVPVMVKSDLCWMKDVEKGDCDFDH 222

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KGAEK FIAQEQ CL +L +  +    V YRS+    KR R+ I +      E+
Sbjct: 223  GGYFIIKGAEKTFIAQEQSCLKKLLITNNQGLTVAYRSEV---KRHRLIIRLVGISKLEN 279

Query: 1168 QYFHG-GKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
                G  KVLT++FMS +IP+W+ FFALG+SSD+E++D I+    DA  +NIL A+I +A
Sbjct: 280  --IEGVEKVLTVYFMSTEIPVWVWFFALGVSSDREVIDLIDYGSEDASILNILFASIRDA 337

Query: 991  EKACQ----AFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGY 824
            +KA +     F + + ALKY+D  IK T FPP E IEE I  YLFP+L G KQKA FLGY
Sbjct: 338  DKATEKVDGGFRRGKNALKYVDDVIKKTAFPPGESIEECISLYLFPNLRGLKQKARFLGY 397

Query: 823  MVKYLFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDR 644
            MVK L     GRRKC+NRDDFRNK              AHI HA+R+MA+ +Q+DLYGDR
Sbjct: 398  MVKSLLQASAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDR 457

Query: 643  PMKPIDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTR 464
             ++PI++YLDASI+TNG+SRAFSTG W HPFK+ E+++GVVAN+ R NPLQ   D+RKTR
Sbjct: 458  VVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVANVGRANPLQTMIDMRKTR 517

Query: 463  QQVGYVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFD 284
            QQV Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A TGLVSTN++E L  +L  
Sbjct: 518  QQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLESLLPELSL 577

Query: 283  CGMEKLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDR 104
            CGMEKLVDD  S S +GK KVF+NGDWVGVC+DSLSFV++L+  RR K++PPQVEIK D 
Sbjct: 578  CGMEKLVDDT-STSLQGKLKVFLNGDWVGVCEDSLSFVSELRRMRRRKKLPPQVEIKRDE 636

Query: 103  KHGEVRIFSDAGRILRPLLIVENIKKIKLVKGG 5
            K GEVR++SDAGRILRPLL+VEN+ KIK  KGG
Sbjct: 637  KQGEVRVYSDAGRILRPLLVVENLNKIKAFKGG 669


>ref|XP_009363651.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Pyrus x bretschneideri] gi|694312758|ref|XP_009363658.1|
            PREDICTED: DNA-directed RNA polymerases IV and V subunit
            2-like [Pyrus x bretschneideri]
            gi|694312760|ref|XP_009363667.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Pyrus x
            bretschneideri] gi|694312763|ref|XP_009363676.1|
            PREDICTED: DNA-directed RNA polymerases IV and V subunit
            2-like [Pyrus x bretschneideri]
          Length = 1203

 Score =  603 bits (1556), Expect = e-169
 Identities = 303/513 (59%), Positives = 381/513 (74%), Gaps = 5/513 (0%)
 Frame = -3

Query: 1528 VYTQNLMKTDKFKSGKEHSVQKQVISEDERDVVIGRIPVMVKSNMCWLNGLDKNDCDFDQ 1349
            VY Q L+ +DKFK+GKE  + K+++S D RD+ IG +PVMVKS++CW+  ++K DCDFD 
Sbjct: 163  VYNQRLVSSDKFKTGKERFLDKEILSTDTRDITIGSVPVMVKSDLCWMKDVEKGDCDFDH 222

Query: 1348 GGYFVVKGAEKAFIAQEQLCLNRLWVYQSPTWLVQYRSDSEVNKRRRVKIEIDDAPTGED 1169
            GGYF++KGAEK FIAQEQ CL +L +  +    V YRS+    KR R+ I +      E+
Sbjct: 223  GGYFIIKGAEKTFIAQEQSCLKKLLITNNQGLTVAYRSEV---KRHRLIIRLVGISKLEN 279

Query: 1168 QYFHG-GKVLTMHFMSCKIPLWIVFFALGMSSDKEIVDTIEVDISDARTVNILLATINNA 992
                G  KVLT++FMS +IP+W+ FFALG+SSD+E++D I+    DA  +NIL A+I +A
Sbjct: 280  --IEGVEKVLTVYFMSTEIPVWVWFFALGVSSDREVIDLIDYGSEDASILNILFASIRDA 337

Query: 991  EKACQ----AFSKEREALKYMDGQIKNTKFPPVEEIEEVIGKYLFPHLNGPKQKAVFLGY 824
            +KA +     F + + ALKY+D  IK T FPP E IEE I  YLFP+L G KQKA FLGY
Sbjct: 338  DKATEKVDGGFRRGKNALKYVDDVIKKTAFPPGESIEECISLYLFPNLRGLKQKARFLGY 397

Query: 823  MVKYLFLCYTGRRKCENRDDFRNKXXXXXXXXXXXXXXAHINHAKRKMARDMQKDLYGDR 644
            MVK L     GRRKC+NRDDFRNK              AHI HA+R MA+ +Q+DLYGDR
Sbjct: 398  MVKSLLQASAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRGMAKALQRDLYGDR 457

Query: 643  PMKPIDYYLDASIITNGLSRAFSTGHWTHPFKKSEKIAGVVANLRRLNPLQMASDLRKTR 464
             ++PI++YLDASI+TNG+SRAFSTG W HPFK+ E+++GVVAN+ R NPLQ   D+RKTR
Sbjct: 458  VVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVANVGRANPLQTMIDMRKTR 517

Query: 463  QQVGYVGKGGDARFPNPSHWGKLCFLSTPDGEKCGLVKNMAITGLVSTNLMEPLKDKLFD 284
            QQV Y GK GDAR+P+PSHWGK+CFLSTPDGE CGLVKN+A TGLVSTN++E L  +L  
Sbjct: 518  QQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNILESLLPELSL 577

Query: 283  CGMEKLVDDAFSASWKGKDKVFVNGDWVGVCDDSLSFVTDLKHSRRSKRIPPQVEIKWDR 104
            CGMEKLVDD  S S +GK KVF+NGDWVGVC+DSLSFV++L+  RR K++PPQVEIK D 
Sbjct: 578  CGMEKLVDDT-STSLQGKLKVFLNGDWVGVCEDSLSFVSELRRMRRRKKLPPQVEIKRDE 636

Query: 103  KHGEVRIFSDAGRILRPLLIVENIKKIKLVKGG 5
            K GEVR++SDAGRILRPLL+VEN+ KIK  KGG
Sbjct: 637  KQGEVRVYSDAGRILRPLLVVENLNKIKAFKGG 669