BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver29_contig00011043
         (2137 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su...   668   0.0  
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su...   668   0.0  
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   639   e-180
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   637   e-180
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   637   e-180
ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV su...   619   e-174
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   615   e-173
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su...   613   e-172
gb|KDP25521.1| hypothetical protein JCGZ_20677 [Jatropha curcas]      613   e-172
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   612   e-172
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   612   e-172
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   610   e-171
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   610   e-171
ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV su...   607   e-170
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su...   607   e-170
emb|CDP09818.1| unnamed protein product [Coffea canephora]            606   e-170
ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV su...   604   e-170
ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV su...   604   e-170
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su...   604   e-170
ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV su...   603   e-169

>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nelumbo nucifera]
          Length = 1373

 Score =  668 bits (1723), Expect = 0.0
 Identities = 363/724 (50%), Positives = 487/724 (67%), Gaps = 40/724 (5%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+    SI+S LV +Y ++ +D LF+AQ++  EWISM GFSVSLSDIY++ +S SR N
Sbjct: 472  SWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRKN 531

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDDD----NRLYDLT 1751
            M++EV  GLQE  +    K  +++   +  L  D E+T     + VD +         L 
Sbjct: 532  MLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLRYDGENTKT-NGYRVDQECPSNQESVVLC 590

Query: 1750 EINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLS 1571
            ++++ ++++ F D+Q L++ YAS +NS+LAM+++GSKG+LLK+V Q LCLGLQH+S PLS
Sbjct: 591  QVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPLS 650

Query: 1570 FRVPSMLSCSTRNH-RDVDTPG---SHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGE 1403
            F++P  LSC++ N+ +  D P    S+I YAV+ENSFL GL+PLEC+VHSVS RD+SFGE
Sbjct: 651  FQIPCKLSCASWNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFGE 710

Query: 1402 NAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTG 1223
            NA++PGTL RK+MFYMRDLY+AYDGTVR AYGNQLVQFSYG   K  S +D   C +  G
Sbjct: 711  NADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCF-KGDSVQDP--CGLFGG 767

Query: 1222 SDRR---CGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQN 1052
            S       GG+PVGSL+ACSISEAAYSALD+P                       +  Q 
Sbjct: 768  SPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQT 827

Query: 1051 VTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFS-EENCQTHLSPWICHF 875
             +LFLSKKL R   G EYGA EVK+HLE+V FS+V+S   ++FS + + Q   SPW+CHF
Sbjct: 828  ASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFSPQRHSQMSASPWVCHF 887

Query: 874  HISKEEMQKKGLNVASISSALEKNCCSNLSK--------------------QKFELPVMH 755
            H+ KE M+++GLN+ SI  AL++N     +K                     K +LP + 
Sbjct: 888  HVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIKLPNLM 947

Query: 754  LDSRSHCSMAGPE---TSCIVGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 584
            + SR    +   E   T CIV  V+I +  S  L  VRD+++PFL  TVIKGF+E + VD
Sbjct: 948  ILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVPFLSRTVIKGFLEFKSVD 1007

Query: 583  IVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSI 410
            I+WNDLP+ S++   SSGEL L+V M+   +  KFWS ++NACLP+MDLIDWERSYP++I
Sbjct: 1008 ILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMDLIDWERSYPDNI 1067

Query: 409  NDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGL--- 239
             ++  AYGI+A W +F RSLK   SDIGK++L EHLLL+A+ LSFTGEFLGL+AKG+   
Sbjct: 1068 YNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGEFLGLSAKGIKRQ 1127

Query: 238  ITQTSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYS 59
            + Q S  SPF QACFS P   F++AAK+ A DDL G LD+V+WGKKVPIGTGG+F+I+YS
Sbjct: 1128 MDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVPIGTGGHFDILYS 1187

Query: 58   QKDY 47
             K +
Sbjct: 1188 GKGF 1191


>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nelumbo nucifera]
          Length = 1489

 Score =  668 bits (1723), Expect = 0.0
 Identities = 363/724 (50%), Positives = 487/724 (67%), Gaps = 40/724 (5%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+    SI+S LV +Y ++ +D LF+AQ++  EWISM GFSVSLSDIY++ +S SR N
Sbjct: 594  SWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRKN 653

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDDD----NRLYDLT 1751
            M++EV  GLQE  +    K  +++   +  L  D E+T     + VD +         L 
Sbjct: 654  MLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLRYDGENTKT-NGYRVDQECPSNQESVVLC 712

Query: 1750 EINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLS 1571
            ++++ ++++ F D+Q L++ YAS +NS+LAM+++GSKG+LLK+V Q LCLGLQH+S PLS
Sbjct: 713  QVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPLS 772

Query: 1570 FRVPSMLSCSTRNH-RDVDTPG---SHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGE 1403
            F++P  LSC++ N+ +  D P    S+I YAV+ENSFL GL+PLEC+VHSVS RD+SFGE
Sbjct: 773  FQIPCKLSCASWNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFGE 832

Query: 1402 NAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTG 1223
            NA++PGTL RK+MFYMRDLY+AYDGTVR AYGNQLVQFSYG   K  S +D   C +  G
Sbjct: 833  NADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCF-KGDSVQDP--CGLFGG 889

Query: 1222 SDRR---CGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQN 1052
            S       GG+PVGSL+ACSISEAAYSALD+P                       +  Q 
Sbjct: 890  SPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQT 949

Query: 1051 VTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFS-EENCQTHLSPWICHF 875
             +LFLSKKL R   G EYGA EVK+HLE+V FS+V+S   ++FS + + Q   SPW+CHF
Sbjct: 950  ASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFSPQRHSQMSASPWVCHF 1009

Query: 874  HISKEEMQKKGLNVASISSALEKNCCSNLSK--------------------QKFELPVMH 755
            H+ KE M+++GLN+ SI  AL++N     +K                     K +LP + 
Sbjct: 1010 HVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIKLPNLM 1069

Query: 754  LDSRSHCSMAGPE---TSCIVGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVD 584
            + SR    +   E   T CIV  V+I +  S  L  VRD+++PFL  TVIKGF+E + VD
Sbjct: 1070 ILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVPFLSRTVIKGFLEFKSVD 1129

Query: 583  IVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSI 410
            I+WNDLP+ S++   SSGEL L+V M+   +  KFWS ++NACLP+MDLIDWERSYP++I
Sbjct: 1130 ILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMDLIDWERSYPDNI 1189

Query: 409  NDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGL--- 239
             ++  AYGI+A W +F RSLK   SDIGK++L EHLLL+A+ LSFTGEFLGL+AKG+   
Sbjct: 1190 YNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGEFLGLSAKGIKRQ 1249

Query: 238  ITQTSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYS 59
            + Q S  SPF QACFS P   F++AAK+ A DDL G LD+V+WGKKVPIGTGG+F+I+YS
Sbjct: 1250 MDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVPIGTGGHFDILYS 1309

Query: 58   QKDY 47
             K +
Sbjct: 1310 GKGF 1313


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  639 bits (1647), Expect = e-180
 Identities = 352/728 (48%), Positives = 483/728 (66%), Gaps = 30/728 (4%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            AWL+D D +++S+LV++   K LD L++AQE+L EW+SMRG SVSLSDIYLS +S SR N
Sbjct: 579  AWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKN 638

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDDDNRLY------- 1760
            M++EV  GL  A Q    K  L++ +  +N L  S +  N +   V D   L+       
Sbjct: 639  MIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQNGVVPDVQSLWYERQGSA 694

Query: 1759 DLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSA 1580
             L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+LLKLV Q LCLGLQHS  
Sbjct: 695  ALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLV 754

Query: 1579 PLSFRVPSMLSCSTRNHRDVDTPG-----------SHILYAVIENSFLSGLDPLECYVHS 1433
            PLSF++P  LSC+  N + V  PG           S+I YAV+ENSFL GL+PLEC+VHS
Sbjct: 755  PLSFKIPHQLSCAAWNKQKV--PGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHS 812

Query: 1432 VSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTE 1253
            V++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGNQLVQFSY +    T ++
Sbjct: 813  VTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSD 872

Query: 1252 --DEKSCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXX 1079
              +E +C          GG+PVGS++AC+ISEAAYSALD+P                   
Sbjct: 873  GINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECG 926

Query: 1078 XXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEEN-CQT 902
              K+   + V+LFLSKKL++  +G EYGA+EVK+HLEK+LFS+++S   IVFS +N  +T
Sbjct: 927  LRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKT 986

Query: 901  HLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRS-HCSMA 725
            H SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K  LP + + S+     M 
Sbjct: 987  HFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDME 1046

Query: 724  GPETSCIVGTVDI---EEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGS 554
              ++ C   TV I   ++ C   L  VRD+++PFLLG V+KG ++V+KVDI+WND P   
Sbjct: 1047 KEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSD 1105

Query: 553  -RTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEA 377
               SSSG L LRV ++       FW ++ +ACL IMD+IDWERS+P++I+D+   YGI+A
Sbjct: 1106 VLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDA 1165

Query: 376  AWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFN 206
             W +F  SLKS  SDIGK++L EHLLL+A  LS TGEF+GL AKG+  Q   TS  SPF 
Sbjct: 1166 GWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFM 1225

Query: 205  QACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LD 29
            Q CFS P   F++A K    D+L G+LDA+AWGK   +G+GG+F+I+YS K +++ +  D
Sbjct: 1226 QGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPED 1285

Query: 28   IFNTLSTQ 5
            I+  L +Q
Sbjct: 1286 IYKLLGSQ 1293


>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
            vinifera]
          Length = 1354

 Score =  637 bits (1644), Expect = e-180
 Identities = 352/730 (48%), Positives = 482/730 (66%), Gaps = 32/730 (4%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            AWL+D D +++S+LV++   K LD L++AQE+L EW+SMRG SVSLSDIYLS +S SR N
Sbjct: 473  AWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKN 532

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDDDNRLY------- 1760
            M++EV  GL  A Q    K  L++ +  +N L  S +  N +   V D   L+       
Sbjct: 533  MIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQNGVVPDVQSLWYERQGSA 588

Query: 1759 DLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSA 1580
             L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+LLKLV Q LCLGLQHS  
Sbjct: 589  ALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLV 648

Query: 1579 PLSFRVPSMLSCSTRNHRDVDTPG-----------SHILYAVIENSFLSGLDPLECYVHS 1433
            PLSF++P  LSC+  N + V  PG           S+I YAV+ENSFL GL+PLEC+VHS
Sbjct: 649  PLSFKIPHQLSCAAWNKQKV--PGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHS 706

Query: 1432 VSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTE 1253
            V++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGNQLVQFSY +    T ++
Sbjct: 707  VTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSD 766

Query: 1252 --DEKSCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXX 1079
              +E +C          GG+PVGS++AC+ISEAAYSALD+P                   
Sbjct: 767  GINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECG 820

Query: 1078 XXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEEN-CQT 902
              K+   + V+LFLSKKL++  +G EYGA+EVK+HLEK+LFS+++S   IVFS +N  +T
Sbjct: 821  LRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKT 880

Query: 901  HLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSH---CS 731
            H SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K  LP + + S        
Sbjct: 881  HFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSNGRDCFVD 940

Query: 730  MAGPETSCIVGTVDI---EEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR 560
            M   ++ C   TV I   ++ C   L  VRD+++PFLLG V+KG ++V+KVDI+WND P 
Sbjct: 941  MEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPD 999

Query: 559  GS-RTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGI 383
                 SSSG L LRV ++       FW ++ +ACL IMD+IDWERS+P++I+D+   YGI
Sbjct: 1000 SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGI 1059

Query: 382  EAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSP 212
            +A W +F  SLKS  SDIGK++L EHLLL+A  LS TGEF+GL AKG+  Q   TS  SP
Sbjct: 1060 DAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSP 1119

Query: 211  FNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK- 35
            F Q CFS P   F++A K    D+L G+LDA+AWGK   +G+GG+F+I+YS K +++ + 
Sbjct: 1120 FMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARP 1179

Query: 34   LDIFNTLSTQ 5
             DI+  L +Q
Sbjct: 1180 EDIYKLLGSQ 1189


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
            vinifera]
          Length = 1460

 Score =  637 bits (1644), Expect = e-180
 Identities = 352/730 (48%), Positives = 482/730 (66%), Gaps = 32/730 (4%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            AWL+D D +++S+LV++   K LD L++AQE+L EW+SMRG SVSLSDIYLS +S SR N
Sbjct: 579  AWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKN 638

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDDDNRLY------- 1760
            M++EV  GL  A Q    K  L++ +  +N L  S +  N +   V D   L+       
Sbjct: 639  MIDEVFCGLLVAEQTCHFKQLLVDSS--QNFLIGSGE--NNQNGVVPDVQSLWYERQGSA 694

Query: 1759 DLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSA 1580
             L + ++ A++  FRD+Q LVY YA+K+NS+LAM+++GSKG+LLKLV Q LCLGLQHS  
Sbjct: 695  ALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLV 754

Query: 1579 PLSFRVPSMLSCSTRNHRDVDTPG-----------SHILYAVIENSFLSGLDPLECYVHS 1433
            PLSF++P  LSC+  N + V  PG           S+I YAV+ENSFL GL+PLEC+VHS
Sbjct: 755  PLSFKIPHQLSCAAWNKQKV--PGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHS 812

Query: 1432 VSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTE 1253
            V++RDSSF +NA++PGTL R++MF+MRDLY+AYDGTVRNAYGNQLVQFSY +    T ++
Sbjct: 813  VTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSD 872

Query: 1252 --DEKSCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXX 1079
              +E +C          GG+PVGS++AC+ISEAAYSALD+P                   
Sbjct: 873  GINEDTCAYD------MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECG 926

Query: 1078 XXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEEN-CQT 902
              K+   + V+LFLSKKL++  +G EYGA+EVK+HLEK+LFS+++S   IVFS +N  +T
Sbjct: 927  LRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKT 986

Query: 901  HLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSH---CS 731
            H SPW+CHFH+ +E  +K+ L   SI  AL   C S  ++ K  LP + + S        
Sbjct: 987  HFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSNGRDCFVD 1046

Query: 730  MAGPETSCIVGTVDI---EEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR 560
            M   ++ C   TV I   ++ C   L  VRD+++PFLLG V+KG ++V+KVDI+WND P 
Sbjct: 1047 MEKEDSDCFCITVSIVNSKKSCIQ-LDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPD 1105

Query: 559  GS-RTSSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGI 383
                 SSSG L LRV ++       FW ++ +ACL IMD+IDWERS+P++I+D+   YGI
Sbjct: 1106 SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGI 1165

Query: 382  EAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSP 212
            +A W +F  SLKS  SDIGK++L EHLLL+A  LS TGEF+GL AKG+  Q   TS  SP
Sbjct: 1166 DAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSP 1225

Query: 211  FNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK- 35
            F Q CFS P   F++A K    D+L G+LDA+AWGK   +G+GG+F+I+YS K +++ + 
Sbjct: 1226 FMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARP 1285

Query: 34   LDIFNTLSTQ 5
             DI+  L +Q
Sbjct: 1286 EDIYKLLGSQ 1295


>ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324654|ref|XP_010053344.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324662|ref|XP_010053345.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324668|ref|XP_010053346.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324674|ref|XP_010053347.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324680|ref|XP_010053348.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324687|ref|XP_010053349.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|629112658|gb|KCW77618.1| hypothetical protein
            EUGRSUZ_D01929 [Eucalyptus grandis]
          Length = 1473

 Score =  619 bits (1597), Expect = e-174
 Identities = 337/731 (46%), Positives = 490/731 (67%), Gaps = 33/731 (4%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            AWL+D DD+++  L+     + L+IL +AQE+L EW+SMRGFSVSLSD+YL+ +S SR N
Sbjct: 584  AWLRDADDNLFQRLITFCQSRVLNILHAAQEVLCEWLSMRGFSVSLSDLYLASDSFSREN 643

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLT 1751
            M+EE+S GLQEA +    K F+++ +   + L  + +  N   F  +    +  +   L+
Sbjct: 644  MIEEISCGLQEADETCNIKQFMVDSS--RDFLAGNGEEINAMAFNSERLCYEKQKSPALS 701

Query: 1750 EINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLS 1571
            + ++ A++ VFRD+Q L Y YASK+NSM++M +SGSKG+LLK+   S+C+GLQHS  PLS
Sbjct: 702  QASVDAFKRVFRDIQSLAYKYASKDNSMISMFKSGSKGNLLKIAQHSMCVGLQHSLVPLS 761

Query: 1570 FRVPSMLSCSTRNH---RDVDT------PGSHILYAVIENSFLSGLDPLECYVHSVSNRD 1418
            F +P  LS ++ N    R++D       P S I +AV++NSFLSGL+PLEC+VHSV+NR 
Sbjct: 762  FDIPHHLSNASYNSHKGRNIDRTHDFPFPQSFIPFAVVKNSFLSGLNPLECFVHSVTNRA 821

Query: 1417 SSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGV---SDKVTSTEDE 1247
            SSF ENAE+PGTL RK+MF+MRDLY++YDGTVR+AYGNQL++FSYG+   S    S +D 
Sbjct: 822  SSFSENAEVPGTLHRKLMFFMRDLYVSYDGTVRSAYGNQLIEFSYGIEKQSSTPCSRKDS 881

Query: 1246 KSCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKT 1067
             SC+ +  S    GG+PVGS++AC+ISEAAYSALD+P                     K+
Sbjct: 882  LSCE-NAKSGEGMGGQPVGSMSACAISEAAYSALDQPISLLEMSPLLNLKNVLESGTKKS 940

Query: 1066 AEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENCQTHLSPW 887
               Q ++LFLSK+L +  +G EYGA+ VK HLE++ FS+++S T I+FS EN   +LSPW
Sbjct: 941  NSCQTMSLFLSKQLAKHRHGLEYGALAVKDHLERMFFSDIVSTTMIIFSPENYNQNLSPW 1000

Query: 886  ICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGPETS- 710
            +CHFHI K+ + ++GL + S+  +L++ C + L + + +LP + + + + CS+ G E   
Sbjct: 1001 VCHFHIRKDIITRRGLILHSVIGSLKRRCHAFLKELRVDLPPLQI-TINDCSLTGEERED 1059

Query: 709  -----CIVGTVDIEEG---CSNP--LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR 560
                 CI  T+ +EE     + P  L  +++ ++P LL TVIKGF+E++KVDI+W++  +
Sbjct: 1060 AANIFCITLTM-VEESKKVATQPTLLKKLQEHVIPCLLETVIKGFMEIKKVDILWSESGK 1118

Query: 559  GSRTS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYG 386
             S++   S+GEL LRVSM+   + +K WS++ N C+PIMD IDW RS+P++I + S A G
Sbjct: 1119 LSKSKPVSTGELYLRVSMSAHSEKMKLWSVLMNNCVPIMDAIDWSRSHPDNIREFSLANG 1178

Query: 385  IEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPS 215
            I+A W +F  SL S  SD GK++L EHL+L+A+ LS +GEF+GL  KG+  Q   +S  S
Sbjct: 1179 IDAGWKYFLNSLGSAVSDTGKTVLPEHLVLLANCLSTSGEFVGLNPKGMSRQREISSVAS 1238

Query: 214  PFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK 35
            PF QACFS P   F++AAK    D L G+LDA+AWGK   +GTGG FEIIYS K +++ K
Sbjct: 1239 PFVQACFSNPGPCFIKAAKAGTVDSLQGSLDALAWGKVPSLGTGGLFEIIYSGKGHELAK 1298

Query: 34   LD-IFNTLSTQ 5
             + ++N L  +
Sbjct: 1299 PESVYNLLGNK 1309


>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Prunus mume]
          Length = 1452

 Score =  615 bits (1585), Expect = e-173
 Identities = 340/727 (46%), Positives = 482/727 (66%), Gaps = 29/727 (3%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+DT  +++ +LV ++  + LD LF+AQE+L EW+SMRG SVSL+D+YL+ +S SR N
Sbjct: 572  SWLRDTGGNLFQSLVNHFQGQVLDFLFAAQEVLCEWLSMRGLSVSLADLYLASDSGSRNN 631

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLT 1751
            ++EE+S GLQEA QA   K  L++  C E L+  +E+  +  TF+ +    +  +   L+
Sbjct: 632  LMEEISCGLQEAEQACIFKQLLVDN-CQEFLMGCAEENRSPLTFDAEYFCHEKQKSAALS 690

Query: 1750 EINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLS 1571
            ++   A++ +FRD+Q L + YA K+NS+L M+++GSKG+L KLV  S+CLGLQHS  PLS
Sbjct: 691  QVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLS 750

Query: 1570 FRVPSMLSCSTRNHRDV-----------DTPGSHILYAVIENSFLSGLDPLECYVHSVSN 1424
            FR+P+ LSC+  N++             +   S+I  AV+E+SFL+GL+PLEC+VHSV++
Sbjct: 751  FRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIPSAVVESSFLTGLNPLECFVHSVTS 810

Query: 1423 RDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVS-DKVTSTEDE 1247
            RDSSF  NA++PGTL RK+MF MRDLY AYDGTVRNAYGNQLVQFSY +  DK  ST   
Sbjct: 811  RDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRNAYGNQLVQFSYDIDMDKSDST--S 868

Query: 1246 KSCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKT 1067
             S   ST +    GG+PVGSL+AC++SEAAYSALD+P                     K+
Sbjct: 869  TSYAKSTTACDGIGGQPVGSLSACALSEAAYSALDQPVSLLETSPLLNLKNILECGSKKS 928

Query: 1066 AEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVF-SEENCQTHLSP 890
            +  Q ++LFLS+KL R  +G EYGA+EVK+HL  + FS+++S   I+F S+ N Q   SP
Sbjct: 929  SAKQTMSLFLSEKLGRRRHGFEYGALEVKNHLVGLTFSDIVSTVMIIFSSQNNSQKRFSP 988

Query: 889  WICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMA----- 725
            W+ HFHI KE ++K+ L V S+  +L   C S   + K  L  + + S+  CS A     
Sbjct: 989  WVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKVVLRSLLITSKG-CSAAQTCNG 1047

Query: 724  GPETSCIVGTV-DIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRT 548
              +T CI  T+ +  +  S  L   RD+++PFLLGTV+KGF+EV+KVDI+WND PR S+ 
Sbjct: 1048 DDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRESKK 1107

Query: 547  --SSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAA 374
               SSGEL LRVSM+ K    + WS++ + CL IM+LIDW RS+P++++D   AYGI+A 
Sbjct: 1108 IHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMNLIDWSRSHPDNVHDYCIAYGIDAG 1167

Query: 373  WAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQ 203
            W +F  +L++  +DIGK IL +HL+L+AD LS TGEF+GL AKG+  Q    S  SPF Q
Sbjct: 1168 WKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGHASVSSPFVQ 1227

Query: 202  ACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDI 26
            ACFS P   F++AAK    D+L G+++A+AWG   P GTG  F+I+YS++   + K L+ 
Sbjct: 1228 ACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNP 1287

Query: 25   FNTLSTQ 5
            ++ L +Q
Sbjct: 1288 YDLLGSQ 1294


>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
          Length = 1453

 Score =  613 bits (1580), Expect = e-172
 Identities = 340/718 (47%), Positives = 479/718 (66%), Gaps = 21/718 (2%)
 Frame = -1

Query: 2095 WLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNM 1916
            WL+DTD +++ +L+++   + LD L +AQE+L EW+SMRG SVSLSD+YL  +S +  NM
Sbjct: 588  WLRDTDGNLFQSLIKHCQSQVLDFLCTAQEVLCEWLSMRGLSVSLSDLYLCPDSYAWKNM 647

Query: 1915 VEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTE 1748
            + EVS GLQ+A      K F+++ +C + L  + ED  +    +V+    +  R   L++
Sbjct: 648  MCEVSYGLQDADHTCNIKQFMVD-SCRDFLAGNGEDDEHPMGLDVEHLCYEKQRSAALSQ 706

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             ++ A++ VFRD+Q L Y YASK+N+++ M ++GSKG+LLKLV  S+CLGLQHS  PLSF
Sbjct: 707  ASVDAFKHVFRDIQILAYKYASKDNALMTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSF 766

Query: 1567 RVPSMLSCSTRNHRDVDTPGS----HILYAVIENSFLSGLDPLECYVHSVSNRDSSFGEN 1400
            R+P  LSC   N +  D        +I  AV+++SFL+GL+PLEC+VHSV++RDSSF +N
Sbjct: 767  RMPHQLSCDAWNKQKDDNATECAKCYIPSAVVKSSFLTGLNPLECFVHSVTSRDSSFSDN 826

Query: 1399 AEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGS 1220
            A++PGTL R++MF+MRD++ AYDGT+RNAYGNQLVQFSY  + + TS     S QI    
Sbjct: 827  ADLPGTLTRRLMFFMRDIHAAYDGTIRNAYGNQLVQFSY-YNREETSCPTNCSGQIIDTF 885

Query: 1219 DRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLF 1040
            D   GG PVGSLAAC+ISEAAYSALD+P                     K+   ++VTLF
Sbjct: 886  DG-IGGRPVGSLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSVTLF 944

Query: 1039 LSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFS-EENCQTHLSPWICHFHISK 863
            LS KL R  +G EYGA+EV++HLE++LFS+++S + I+ S + + +T  SPW+CHFH+ K
Sbjct: 945  LSDKLGRRRHGFEYGALEVQNHLERLLFSDIVSISRIIHSPQSDSKTRFSPWVCHFHVDK 1004

Query: 862  EEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAG-----PETSCIVG 698
            E M+K+ L++ SI  AL K C     K +  LP + +  +  CS+A       +T CI  
Sbjct: 1005 EIMKKRSLSIHSIIDALYKQC-----KSQTILPNVQITCKD-CSVADNHREIEDTLCITV 1058

Query: 697  TV-DIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR--GSRTSSSGELC 527
            TV +  +  S  L  +RD+++PFLL TV+KG +E+EKVDI+WN+ PR   S   S GEL 
Sbjct: 1059 TVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEKVDILWNERPRIQKSHNRSYGELY 1118

Query: 526  LRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLK 347
            LRVSM+ +    + W+++ + CLPIMD+IDW RS+ ++I D   AYGI+A W  F  +LK
Sbjct: 1119 LRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSDNIRDFCLAYGIDAGWEFFLNNLK 1178

Query: 346  SVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFN 176
            S  SD+GKS+L EHL+L+A+ LS TGEF+GL AKG   Q    S  SPF QACFS P   
Sbjct: 1179 SAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWKRQREHASVLSPFVQACFSSPGSC 1238

Query: 175  FVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLSTQ 5
            F++AAK    DDL G+LDA+AWGK  P+GT G F+IIYS K +++ K +D+++ L +Q
Sbjct: 1239 FIKAAKGGVMDDLRGSLDALAWGKTPPVGT-GQFDIIYSGKGFELSKPVDVYDLLGSQ 1295


>gb|KDP25521.1| hypothetical protein JCGZ_20677 [Jatropha curcas]
          Length = 942

 Score =  613 bits (1580), Expect = e-172
 Identities = 340/718 (47%), Positives = 479/718 (66%), Gaps = 21/718 (2%)
 Frame = -1

Query: 2095 WLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNM 1916
            WL+DTD +++ +L+++   + LD L +AQE+L EW+SMRG SVSLSD+YL  +S +  NM
Sbjct: 77   WLRDTDGNLFQSLIKHCQSQVLDFLCTAQEVLCEWLSMRGLSVSLSDLYLCPDSYAWKNM 136

Query: 1915 VEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTE 1748
            + EVS GLQ+A      K F+++ +C + L  + ED  +    +V+    +  R   L++
Sbjct: 137  MCEVSYGLQDADHTCNIKQFMVD-SCRDFLAGNGEDDEHPMGLDVEHLCYEKQRSAALSQ 195

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             ++ A++ VFRD+Q L Y YASK+N+++ M ++GSKG+LLKLV  S+CLGLQHS  PLSF
Sbjct: 196  ASVDAFKHVFRDIQILAYKYASKDNALMTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSF 255

Query: 1567 RVPSMLSCSTRNHRDVDTPGS----HILYAVIENSFLSGLDPLECYVHSVSNRDSSFGEN 1400
            R+P  LSC   N +  D        +I  AV+++SFL+GL+PLEC+VHSV++RDSSF +N
Sbjct: 256  RMPHQLSCDAWNKQKDDNATECAKCYIPSAVVKSSFLTGLNPLECFVHSVTSRDSSFSDN 315

Query: 1399 AEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGS 1220
            A++PGTL R++MF+MRD++ AYDGT+RNAYGNQLVQFSY  + + TS     S QI    
Sbjct: 316  ADLPGTLTRRLMFFMRDIHAAYDGTIRNAYGNQLVQFSY-YNREETSCPTNCSGQIIDTF 374

Query: 1219 DRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLF 1040
            D   GG PVGSLAAC+ISEAAYSALD+P                     K+   ++VTLF
Sbjct: 375  DG-IGGRPVGSLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSVTLF 433

Query: 1039 LSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFS-EENCQTHLSPWICHFHISK 863
            LS KL R  +G EYGA+EV++HLE++LFS+++S + I+ S + + +T  SPW+CHFH+ K
Sbjct: 434  LSDKLGRRRHGFEYGALEVQNHLERLLFSDIVSISRIIHSPQSDSKTRFSPWVCHFHVDK 493

Query: 862  EEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAG-----PETSCIVG 698
            E M+K+ L++ SI  AL K C     K +  LP + +  +  CS+A       +T CI  
Sbjct: 494  EIMKKRSLSIHSIIDALYKQC-----KSQTILPNVQITCKD-CSVADNHREIEDTLCITV 547

Query: 697  TV-DIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR--GSRTSSSGELC 527
            TV +  +  S  L  +RD+++PFLL TV+KG +E+EKVDI+WN+ PR   S   S GEL 
Sbjct: 548  TVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEKVDILWNERPRIQKSHNRSYGELY 607

Query: 526  LRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLK 347
            LRVSM+ +    + W+++ + CLPIMD+IDW RS+ ++I D   AYGI+A W  F  +LK
Sbjct: 608  LRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSDNIRDFCLAYGIDAGWEFFLNNLK 667

Query: 346  SVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFN 176
            S  SD+GKS+L EHL+L+A+ LS TGEF+GL AKG   Q    S  SPF QACFS P   
Sbjct: 668  SAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWKRQREHASVLSPFVQACFSSPGSC 727

Query: 175  FVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLSTQ 5
            F++AAK    DDL G+LDA+AWGK  P+GT G F+IIYS K +++ K +D+++ L +Q
Sbjct: 728  FIKAAKGGVMDDLRGSLDALAWGKTPPVGT-GQFDIIYSGKGFELSKPVDVYDLLGSQ 784


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  612 bits (1579), Expect = e-172
 Identities = 336/701 (47%), Positives = 472/701 (67%), Gaps = 20/701 (2%)
 Frame = -1

Query: 2095 WLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNM 1916
            WL+DTD +++ +L++   D+ LD L+ AQE+L EW+SMRG SVSLSD+YL  +S SR NM
Sbjct: 585  WLRDTDGNLFQSLIKQCQDQVLDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENM 644

Query: 1915 VEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTE 1748
            ++EV  GLQ+A      K F+++ +C + L    ED      F+V+    +  R   L++
Sbjct: 645  MDEVLFGLQDAKGTCNMKQFMVD-SCRDFLASIDEDEQYSVNFDVEHLCHEKQRSAALSQ 703

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             ++ A++ VFRD+Q L Y YASK+N+++AM +SGSKG+LLK+V  S+CLGLQHS  PLSF
Sbjct: 704  ASVDAFKHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSF 763

Query: 1567 RVPSMLSCSTRNHRD----VDTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGEN 1400
            R+P  LSC   N +     V+   S+I  AV+E  FL+GL+PLEC+VHSV++R+SSF +N
Sbjct: 764  RMPLQLSCDAWNKQKAENAVECARSYIPSAVVEGCFLTGLNPLECFVHSVTSRESSFSDN 823

Query: 1399 AEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGS 1220
            A++PGTL R++MF+MRD++ AYDG+VR+AYGNQL+QFSY + D+  S E   + +I    
Sbjct: 824  ADLPGTLTRRLMFFMRDVHAAYDGSVRSAYGNQLIQFSYNI-DEGRSAETYGTAKIVDNY 882

Query: 1219 DRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLF 1040
            D    G+PVGSLAACSISEAAYSALD+P                     K+   ++++LF
Sbjct: 883  D-GMAGKPVGSLAACSISEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSMSLF 941

Query: 1039 LSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEEN-CQTHLSPWICHFHISK 863
            LS+KL R  +G EYGA++V+ HLE++LFS+++S + I+FS ++  +T  SPW+CHFH+ K
Sbjct: 942  LSEKLGRRRHGFEYGALKVQDHLERLLFSDIVSVSRIIFSSQSESKTCFSPWVCHFHVYK 1001

Query: 862  EEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAG-----PETSCIVG 698
            E M+K+ LNV SI + L   C SN +     LP + +  +S CS+A       ET CI  
Sbjct: 1002 EIMKKRNLNVDSIINILNGRCKSNTN-----LPNVQISCKS-CSIADNHREKEETLCITV 1055

Query: 697  T-VDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRTSSS--GELC 527
            T V+  +  S  LA ++D+M+PFLL TV+KG +E+ KVDI+W D PR S+T +   GEL 
Sbjct: 1056 TIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEINKVDILWKDWPRISKTHNQPYGELY 1115

Query: 526  LRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLK 347
            LRVSM+   +  + W+++ + CLPIMD+IDW  S P+++ D S AYGI+A W  F + L+
Sbjct: 1116 LRVSMSADSEKTRLWNLLMDYCLPIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFLQRLE 1175

Query: 346  SVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFN 176
            S  SD+GKS+L EH+LL+A+ LS TGEF+GL AKG   Q    S  SPF QACFS P   
Sbjct: 1176 SAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQREDASVSSPFVQACFSSPGNC 1235

Query: 175  FVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQK 53
            F++AAK   KDDL G+LDA+AWGK   +GT G F+I+YS K
Sbjct: 1236 FIKAAKAGVKDDLQGSLDALAWGKVPSVGT-GQFDIVYSGK 1275


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  612 bits (1579), Expect = e-172
 Identities = 329/726 (45%), Positives = 473/726 (65%), Gaps = 30/726 (4%)
 Frame = -1

Query: 2095 WLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNM 1916
            WL+D D +++ +L+++Y  K LD L++AQE+L EW+SMRG SVSLSD+YLS +S S+ NM
Sbjct: 594  WLRDADGNLFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSDSNSQKNM 653

Query: 1915 VEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTE 1748
            ++E+  GLQE  Q    K  +++    + L+   E+  +    +V+    +  R   L++
Sbjct: 654  MDEIFCGLQEIEQTCNFKQLMVDSN-HDFLVGHDEEVDSFMALDVEQMCYEKQRSAALSQ 712

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             ++ +++ VFRD+Q L+Y YA+K+NS+L M ++GSKG+LLKLV  SLCLGLQHS  PLSF
Sbjct: 713  ASVDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSF 772

Query: 1567 RVPSMLSCSTRNHRD-----------VDTPGSHILYAVIENSFLSGLDPLECYVHSVSNR 1421
            R P  LSC+  N++             ++  ++I YAV+E+SF++GL+PLE +VHSV++R
Sbjct: 773  RFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFVHSVTSR 832

Query: 1420 DSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKS 1241
            DSSF +NA++PGTL R++MF+MRDLY AYDGTVRN+YG+ +VQF Y +    +S      
Sbjct: 833  DSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAH 892

Query: 1240 CQISTGSD--RRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKT 1067
              IS  S      GG+PVGSL+AC+ISEAAYSALD+P                     ++
Sbjct: 893  GLISESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNLKRVVECGSKRS 952

Query: 1066 AEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENC-QTHLSP 890
               Q +TLFLS KL R  +GSEY A+EVK+HLE++ FS++++  +I+FS +   + H +P
Sbjct: 953  NADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSIIFSPQMYRENHFTP 1012

Query: 889  WICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSR----SHCSMAG 722
            W+CHFH+ K+ M+++ L V SI  +L  +C +  +  K  LP M + S     SH  M  
Sbjct: 1013 WVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDMQITSNGRACSHIDMPN 1072

Query: 721  PE-TSCIVGT-VDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRT 548
             + T CI  T V+  +     L  +RD+++P+LL  VIKGF E++KVDI+W D  + S+ 
Sbjct: 1073 EDDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKP 1132

Query: 547  --SSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAA 374
              SS GEL LRV ++  F   K W ++ N CL IMD+IDW RS+P++IN +  AYGI+A 
Sbjct: 1133 HKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAG 1192

Query: 373  WAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQTS---TPSPFNQ 203
            W  F  +LKS  SD GK+IL EHLL++A+ LS TGEF+GL +KGL  Q       SPF Q
Sbjct: 1193 WKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQ 1252

Query: 202  ACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQV-DKLDI 26
            ACFS P  +FV+AAK  A DDL GT+DA+AWG+   IGTGG F+IIYS KD ++ + +D+
Sbjct: 1253 ACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDV 1312

Query: 25   FNTLST 8
            +  L +
Sbjct: 1313 YKLLGS 1318


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  610 bits (1574), Expect = e-171
 Identities = 336/721 (46%), Positives = 474/721 (65%), Gaps = 26/721 (3%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+D  D+++ +LV+++G  TLD+L++AQ +L EW+SMRG SVSLSD+Y+S +S SR N
Sbjct: 352  SWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSDSYSREN 411

Query: 1918 MVEEVSMGLQEATQAFRTKDFLI--NRTCMENLLRDSEDTHNCE-TFEVDDDNRLYDLTE 1748
            M++EV  GLQEA +    +  +I  N+  +   L +S+++   +  F      +   L++
Sbjct: 412  MIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSMGFDFEFMSIMQQKSASLSQ 471

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV  S+CLGLQ S  P+SF
Sbjct: 472  ASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSF 531

Query: 1567 RVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSFLSGLDPLECYVHSVSNR 1421
            R+P  LSC   N           H+  + PGS+I  AV+++SFL+GL+PLEC+VHS++ R
Sbjct: 532  RMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTR 591

Query: 1420 DSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKS 1241
            DSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQFSY  ++K+ ST+    
Sbjct: 592  DSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGD 651

Query: 1240 CQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAE 1061
               S   +   GG PVGSLAAC+ISEAAYSALD+P                       + 
Sbjct: 652  ALES--HNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSG 709

Query: 1060 VQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENCQ-THLSPWI 884
             +  ++FLSK+L R  +G EYGA+EVK HLE++L SEV+S   I FS E  + TH  PW+
Sbjct: 710  EKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWV 769

Query: 883  CHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSM--AGPETS 710
            CHFHI KE ++ + L + SI  AL     +  +K   +LP +H+  +  CS+  A  E S
Sbjct: 770  CHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHITCKD-CSVAEARKEKS 828

Query: 709  CIVGTVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS-- 545
             I  TV + E   +P   L  +RDV++PFLL TVIKGF   +KVDI+W +LP  S++S  
Sbjct: 829  EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRG 888

Query: 544  SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAH 365
            S+GEL L+V M+     +KFW+ + ++CL I DLIDWERSYP+ ++D++ AYGI+ AW +
Sbjct: 889  STGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEY 948

Query: 364  FFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQTSTP---SPFNQACF 194
            F   L S  S+ GK IL EHL+L AD L+ TGEF+ L+AKGL  Q       SPF QACF
Sbjct: 949  FLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACF 1008

Query: 193  SRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQ-VDKLDIFNT 17
            S P  +FV+AAK    D+L G+L+++AWGK   IGTG +F+IIYS K Y+  + +D++  
Sbjct: 1009 SNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTL 1068

Query: 16   L 14
            L
Sbjct: 1069 L 1069


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  610 bits (1574), Expect = e-171
 Identities = 336/721 (46%), Positives = 474/721 (65%), Gaps = 26/721 (3%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+D  D+++ +LV+++G  TLD+L++AQ +L EW+SMRG SVSLSD+Y+S +S SR N
Sbjct: 565  SWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSDSYSREN 624

Query: 1918 MVEEVSMGLQEATQAFRTKDFLI--NRTCMENLLRDSEDTHNCE-TFEVDDDNRLYDLTE 1748
            M++EV  GLQEA +    +  +I  N+  +   L +S+++   +  F      +   L++
Sbjct: 625  MIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSMGFDFEFMSIMQQKSASLSQ 684

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             +  A++ VFRD+Q LVY+YAS +NS+LAM+++GSKG+LLKLV  S+CLGLQ S  P+SF
Sbjct: 685  ASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSF 744

Query: 1567 RVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSFLSGLDPLECYVHSVSNR 1421
            R+P  LSC   N           H+  + PGS+I  AV+++SFL+GL+PLEC+VHS++ R
Sbjct: 745  RMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTR 804

Query: 1420 DSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKS 1241
            DSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQFSY  ++K+ ST+    
Sbjct: 805  DSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGD 864

Query: 1240 CQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAE 1061
               S   +   GG PVGSLAAC+ISEAAYSALD+P                       + 
Sbjct: 865  ALES--HNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSG 922

Query: 1060 VQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENCQ-THLSPWI 884
             +  ++FLSK+L R  +G EYGA+EVK HLE++L SEV+S   I FS E  + TH  PW+
Sbjct: 923  EKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWV 982

Query: 883  CHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSM--AGPETS 710
            CHFHI KE ++ + L + SI  AL     +  +K   +LP +H+  +  CS+  A  E S
Sbjct: 983  CHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGNDLPNLHITCKD-CSVAEARKEKS 1041

Query: 709  CIVGTVDIEEGCSNP---LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS-- 545
             I  TV + E   +P   L  +RDV++PFLL TVIKGF   +KVDI+W +LP  S++S  
Sbjct: 1042 EICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRG 1101

Query: 544  SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAH 365
            S+GEL L+V M+     +KFW+ + ++CL I DLIDWERSYP+ ++D++ AYGI+ AW +
Sbjct: 1102 STGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEY 1161

Query: 364  FFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQTSTP---SPFNQACF 194
            F   L S  S+ GK IL EHL+L AD L+ TGEF+ L+AKGL  Q       SPF QACF
Sbjct: 1162 FLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACF 1221

Query: 193  SRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQ-VDKLDIFNT 17
            S P  +FV+AAK    D+L G+L+++AWGK   IGTG +F+IIYS K Y+  + +D++  
Sbjct: 1222 SNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTL 1281

Query: 16   L 14
            L
Sbjct: 1282 L 1282


>ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nicotiana tomentosiformis]
          Length = 1211

 Score =  607 bits (1565), Expect = e-170
 Identities = 332/711 (46%), Positives = 463/711 (65%), Gaps = 26/711 (3%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+D  ++++ +LV+++G  TLD+L++AQ +L EW+SMRG SVSLSD+Y+S +  SR N
Sbjct: 325  SWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSDPYSREN 384

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDD----DNRLYDLT 1751
            M++EV  GLQEA +    +  L++R   + L    E +     F ++       +   L+
Sbjct: 385  MIDEVFCGLQEAERLSYIQ-LLMSRYNHDFLAGSLEVSQKAMGFNLEFMSIMQQKSASLS 443

Query: 1750 EINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLS 1571
            + ++ +++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKLV  S+CLGLQ S  PLS
Sbjct: 444  QASVSSFKHVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLS 503

Query: 1570 FRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSFLSGLDPLECYVHSVSN 1424
            FR+P  LSC   N           H   + PG +I  AV+ENSFL+GL+PLEC+VHS++ 
Sbjct: 504  FRMPRRLSCDAWNNHKAHLPFEKAHNVPERPGPYIPCAVVENSFLAGLNPLECFVHSLTT 563

Query: 1423 RDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEK 1244
            RDSSF  +A++ GTL RK+MF+MRDLY  YDGTVRNAYGNQ+VQFSY  +D+++ST +  
Sbjct: 564  RDSSFSGHADVSGTLNRKLMFFMRDLYSGYDGTVRNAYGNQIVQFSYYSADQISSTYNRA 623

Query: 1243 SCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTA 1064
            S  I        GG PVGSLAAC+ISEAAYSALD P                       +
Sbjct: 624  SHAI--------GGHPVGSLAACAISEAAYSALDLPVGALEPSPLLNLKKILEAGVKSNS 675

Query: 1063 EVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENCQ-THLSPW 887
              +  TLFLS++L R  +G EYGAIEVK HLE++L S+++S   I FS E C+ TH SPW
Sbjct: 676  SEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTVMICFSPETCKSTHSSPW 735

Query: 886  ICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGPETS- 710
            +CHFHI KE ++ + L + S+  AL     S   +   +LP +H+  +  CS A  + + 
Sbjct: 736  VCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHITCKD-CSAAEMQKAN 794

Query: 709  ---CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS- 545
               CI V  V+  +   + L  +RD+++PFLL TVIKGF   +KVDI+W +LP  S++S 
Sbjct: 795  SKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVDILWRELPSTSKSSR 854

Query: 544  -SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWA 368
             S+GEL L+V M+       FW+ + ++CL IMDLIDWE+S+P++++D++ AYG++ AW 
Sbjct: 855  GSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEQSHPDNVHDLTVAYGVDVAWK 914

Query: 367  HFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQAC 197
            +F R+L S  S+ GK IL EHL+L AD L+ TGEF+ L  KGL  Q       SPF QAC
Sbjct: 915  YFLRNLNSAVSETGKKILLEHLVLAADCLTATGEFVPLNTKGLAQQRKCAGVISPFMQAC 974

Query: 196  FSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQ 44
            FS P  +FV+AAK E  DDL G+L+A+AWGK    GTG +F+IIYS K Y+
Sbjct: 975  FSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDIIYSGKGYE 1025


>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1447

 Score =  607 bits (1565), Expect = e-170
 Identities = 332/711 (46%), Positives = 463/711 (65%), Gaps = 26/711 (3%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+D  ++++ +LV+++G  TLD+L++AQ +L EW+SMRG SVSLSD+Y+S +  SR N
Sbjct: 561  SWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSDPYSREN 620

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDD----DNRLYDLT 1751
            M++EV  GLQEA +    +  L++R   + L    E +     F ++       +   L+
Sbjct: 621  MIDEVFCGLQEAERLSYIQ-LLMSRYNHDFLAGSLEVSQKAMGFNLEFMSIMQQKSASLS 679

Query: 1750 EINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLS 1571
            + ++ +++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKLV  S+CLGLQ S  PLS
Sbjct: 680  QASVSSFKHVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLS 739

Query: 1570 FRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSFLSGLDPLECYVHSVSN 1424
            FR+P  LSC   N           H   + PG +I  AV+ENSFL+GL+PLEC+VHS++ 
Sbjct: 740  FRMPRRLSCDAWNNHKAHLPFEKAHNVPERPGPYIPCAVVENSFLAGLNPLECFVHSLTT 799

Query: 1423 RDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEK 1244
            RDSSF  +A++ GTL RK+MF+MRDLY  YDGTVRNAYGNQ+VQFSY  +D+++ST +  
Sbjct: 800  RDSSFSGHADVSGTLNRKLMFFMRDLYSGYDGTVRNAYGNQIVQFSYYSADQISSTYNRA 859

Query: 1243 SCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTA 1064
            S  I        GG PVGSLAAC+ISEAAYSALD P                       +
Sbjct: 860  SHAI--------GGHPVGSLAACAISEAAYSALDLPVGALEPSPLLNLKKILEAGVKSNS 911

Query: 1063 EVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENCQ-THLSPW 887
              +  TLFLS++L R  +G EYGAIEVK HLE++L S+++S   I FS E C+ TH SPW
Sbjct: 912  SEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTVMICFSPETCKSTHSSPW 971

Query: 886  ICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGPETS- 710
            +CHFHI KE ++ + L + S+  AL     S   +   +LP +H+  +  CS A  + + 
Sbjct: 972  VCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHITCKD-CSAAEMQKAN 1030

Query: 709  ---CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS- 545
               CI V  V+  +   + L  +RD+++PFLL TVIKGF   +KVDI+W +LP  S++S 
Sbjct: 1031 SKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVDILWRELPSTSKSSR 1090

Query: 544  -SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWA 368
             S+GEL L+V M+       FW+ + ++CL IMDLIDWE+S+P++++D++ AYG++ AW 
Sbjct: 1091 GSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEQSHPDNVHDLTVAYGVDVAWK 1150

Query: 367  HFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQAC 197
            +F R+L S  S+ GK IL EHL+L AD L+ TGEF+ L  KGL  Q       SPF QAC
Sbjct: 1151 YFLRNLNSAVSETGKKILLEHLVLAADCLTATGEFVPLNTKGLAQQRKCAGVISPFMQAC 1210

Query: 196  FSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQ 44
            FS P  +FV+AAK E  DDL G+L+A+AWGK    GTG +F+IIYS K Y+
Sbjct: 1211 FSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDIIYSGKGYE 1261


>emb|CDP09818.1| unnamed protein product [Coffea canephora]
          Length = 1511

 Score =  606 bits (1563), Expect = e-170
 Identities = 345/727 (47%), Positives = 464/727 (63%), Gaps = 30/727 (4%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+D D +++ +LVR   ++ L  L +AQE+L EW++MRG SVSLSD+YL+ ++ SR N
Sbjct: 618  SWLRDNDGNLFHSLVRCCKNEVLGFLCAAQEVLCEWLAMRGLSVSLSDLYLTSDAYSRQN 677

Query: 1918 MVEEVSMGLQEAT--------QAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDDDNRL 1763
            M+EEVS GLQEA              +DFL+  T       D  + H      +   N  
Sbjct: 678  MIEEVSCGLQEAELLSSIRLLMMGSNQDFLVESTEANKRSVDFGEQH---LSSIQQQNSS 734

Query: 1762 YDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSS 1583
              L+E ++ A++ VF DVQ LVYHY SK+NS L+M+ +GSKG+LLKLV  S+CLGLQHS 
Sbjct: 735  V-LSEASVSAFKQVFLDVQHLVYHYVSKDNSFLSMLMAGSKGNLLKLVQHSMCLGLQHSV 793

Query: 1582 APLSFRVPSMLSCSTRN---------HRDVDTPGSHILYAVIENSFLSGLDPLECYVHSV 1430
             PLSF +P  LSC+T N         H  +D  GS+I +AVIENSFL+GL+P+EC+VHS+
Sbjct: 794  VPLSFSIPHQLSCATWNYHKISVHESHGTLDHSGSYIPFAVIENSFLTGLNPMECFVHSL 853

Query: 1429 SNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTED 1250
            + RDSSF  +A++ GTL RK+MF+MRDL + YDGTVRN+YGNQL+QFSY   D +T    
Sbjct: 854  TTRDSSFSGHADVSGTLTRKLMFFMRDLSIGYDGTVRNSYGNQLIQFSYNSRDTLTPCNC 913

Query: 1249 EKSCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXK 1070
                   T S    GG PVG+LAAC+ISEAAYSALD P                     K
Sbjct: 914  NDESPSETISAYDVGGHPVGALAACAISEAAYSALDLPISALESSPLLNLKKILDCGVKK 973

Query: 1069 TAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENC-QTHLS 893
            ++  +  ++FL KKL R  YG EYGA+EVK HLE+++  +V+S + I +S+E C ++ +S
Sbjct: 974  SSGDKTASIFLCKKLGRQTYGLEYGALEVKDHLERLMLEDVVSSSMISYSKEKCSRSQIS 1033

Query: 892  PWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGPET 713
            PWICHFHISKE +++K L V SI  AL     S   K K  LP + +  ++ CS+A  + 
Sbjct: 1034 PWICHFHISKEIIKRKRLRVQSIIDALNMAWRSAKVKLKINLPDLQITGKA-CSLALKQN 1092

Query: 712  S-----CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSR 551
                  C+ V  ++  +  S  L  +R+++MPFLLGTVIKGF E +KVDI+W D    S+
Sbjct: 1093 EKDTKICLTVSILEKSKKSSLRLDILRNMVMPFLLGTVIKGFPEFKKVDIMWKDCRNSSK 1152

Query: 550  TS--SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEA 377
            +S  S G + LRV M+ K    KFWS++ + CL I DLIDWERS+P+ I+D++ AYGI+A
Sbjct: 1153 SSKGSLGGVYLRVFMSEKCDRTKFWSVLVDNCLRIRDLIDWERSHPDDIHDMAPAYGIDA 1212

Query: 376  AWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFN 206
            A  HF  SL S  SD GK+IL EHL+L AD LS TGEF+ L AKGL  Q   T+  SPF 
Sbjct: 1213 AVNHFLSSLNSAISDTGKTILPEHLVLTADCLSATGEFVALNAKGLAQQRKETAVSSPFL 1272

Query: 205  QACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LD 29
            QACFS P   FV+AAK    D+L GT+DA+AWG    IGTG  F+IIYS K ++  K +D
Sbjct: 1273 QACFSSPGDCFVRAAKTGIVDNLQGTVDALAWGMVPSIGTGARFDIIYSGKGHEPAKSID 1332

Query: 28   IFNTLST 8
            +++ L +
Sbjct: 1333 VYDLLGS 1339


>ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
            [Cucumis sativus]
          Length = 1361

 Score =  604 bits (1558), Expect = e-170
 Identities = 326/725 (44%), Positives = 467/725 (64%), Gaps = 28/725 (3%)
 Frame = -1

Query: 2095 WLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNM 1916
            WL+D+  +++  L+ +   KTLD L  AQ +L EW+S RG SVSLSD+YLS +S S  NM
Sbjct: 483  WLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENM 542

Query: 1915 VEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTE 1748
            ++++  GLQEA +    K  +++ +  E L+ + ED  +  +  V+    +  +   L +
Sbjct: 543  MDDIFCGLQEAEETCNLKQLMVD-SHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQ 601

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             ++ A++ VFRD+Q LVY Y+ K+NS+L M ++GSKG+L+KLV  S+CLGLQHS   LSF
Sbjct: 602  ASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSF 661

Query: 1567 RVPSMLSCSTRNHRDV----------DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRD 1418
             +P  LSC+  N + +          D   S I YAV+ENSFLSGL+P EC+ HSV+NRD
Sbjct: 662  SLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRD 721

Query: 1417 SSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSC 1238
            SSF +NAE+PGTL RK+ F MRD+Y AYDGTVRNAYGNQLVQF Y +    + +E E   
Sbjct: 722  SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESE--- 778

Query: 1237 QISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEV 1058
              +   DR  GG PVGSLAAC+ISEAAYSALD+P                     + +  
Sbjct: 779  --NNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTK 836

Query: 1057 QNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSE-ENCQTHLSPWIC 881
            Q  +LFLS+KL + +YG EYGA+ VK+HLE+V+F +++S   I+FS   + + H SPW+C
Sbjct: 837  QTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVC 896

Query: 880  HFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGP-----E 716
            HFH+ KE ++K+ L + S+  +L   C S   + +  LP + + ++  C +A       +
Sbjct: 897  HFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQD-CPLADSLTEDGD 955

Query: 715  TSCIVGTVDIEEGCSN---PLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSR-T 548
            T C+  TV I E   N    L  ++D+++ FLLGTVI+GF E+++VDI WND P+  +  
Sbjct: 956  TVCL--TVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPR 1013

Query: 547  SSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWA 368
             S GEL LRV+M+ +  N +FW+ + N CLPIMDLIDW RS+P++ + +  AYGI++ W 
Sbjct: 1014 CSHGELYLRVTMSGE-GNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWK 1072

Query: 367  HFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQTS---TPSPFNQAC 197
            +F  SL+S T D+GK+I  EHLLL+++ LS TGEF+GL  KGL  Q       +PF QAC
Sbjct: 1073 YFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQAC 1132

Query: 196  FSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFN 20
            FS P    ++AAK   KD+LSG+LDA+AWG+   +GTGG F+I+YS K ++++K +D++N
Sbjct: 1133 FSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYN 1192

Query: 19   TLSTQ 5
             L  Q
Sbjct: 1193 LLGGQ 1197


>ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Cucumis sativus]
          Length = 1362

 Score =  604 bits (1558), Expect = e-170
 Identities = 326/725 (44%), Positives = 467/725 (64%), Gaps = 28/725 (3%)
 Frame = -1

Query: 2095 WLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNM 1916
            WL+D+  +++  L+ +   KTLD L  AQ +L EW+S RG SVSLSD+YLS +S S  NM
Sbjct: 484  WLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENM 543

Query: 1915 VEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTE 1748
            ++++  GLQEA +    K  +++ +  E L+ + ED  +  +  V+    +  +   L +
Sbjct: 544  MDDIFCGLQEAEETCNLKQLMVD-SHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQ 602

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             ++ A++ VFRD+Q LVY Y+ K+NS+L M ++GSKG+L+KLV  S+CLGLQHS   LSF
Sbjct: 603  ASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSF 662

Query: 1567 RVPSMLSCSTRNHRDV----------DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRD 1418
             +P  LSC+  N + +          D   S I YAV+ENSFLSGL+P EC+ HSV+NRD
Sbjct: 663  SLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRD 722

Query: 1417 SSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSC 1238
            SSF +NAE+PGTL RK+ F MRD+Y AYDGTVRNAYGNQLVQF Y +    + +E E   
Sbjct: 723  SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESE--- 779

Query: 1237 QISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEV 1058
              +   DR  GG PVGSLAAC+ISEAAYSALD+P                     + +  
Sbjct: 780  --NNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTK 837

Query: 1057 QNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSE-ENCQTHLSPWIC 881
            Q  +LFLS+KL + +YG EYGA+ VK+HLE+V+F +++S   I+FS   + + H SPW+C
Sbjct: 838  QTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVC 897

Query: 880  HFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGP-----E 716
            HFH+ KE ++K+ L + S+  +L   C S   + +  LP + + ++  C +A       +
Sbjct: 898  HFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQD-CPLADSLTEDGD 956

Query: 715  TSCIVGTVDIEEGCSN---PLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSR-T 548
            T C+  TV I E   N    L  ++D+++ FLLGTVI+GF E+++VDI WND P+  +  
Sbjct: 957  TVCL--TVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPR 1014

Query: 547  SSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWA 368
             S GEL LRV+M+ +  N +FW+ + N CLPIMDLIDW RS+P++ + +  AYGI++ W 
Sbjct: 1015 CSHGELYLRVTMSGE-GNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWK 1073

Query: 367  HFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQTS---TPSPFNQAC 197
            +F  SL+S T D+GK+I  EHLLL+++ LS TGEF+GL  KGL  Q       +PF QAC
Sbjct: 1074 YFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQAC 1133

Query: 196  FSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFN 20
            FS P    ++AAK   KD+LSG+LDA+AWG+   +GTGG F+I+YS K ++++K +D++N
Sbjct: 1134 FSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYN 1193

Query: 19   TLSTQ 5
             L  Q
Sbjct: 1194 LLGGQ 1198


>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Cucumis sativus] gi|778675671|ref|XP_011650448.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Cucumis sativus]
            gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
            gi|700200830|gb|KGN55963.1| hypothetical protein
            Csa_3G039340 [Cucumis sativus]
          Length = 1483

 Score =  604 bits (1558), Expect = e-170
 Identities = 326/725 (44%), Positives = 467/725 (64%), Gaps = 28/725 (3%)
 Frame = -1

Query: 2095 WLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNM 1916
            WL+D+  +++  L+ +   KTLD L  AQ +L EW+S RG SVSLSD+YLS +S S  NM
Sbjct: 605  WLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENM 664

Query: 1915 VEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTE 1748
            ++++  GLQEA +    K  +++ +  E L+ + ED  +  +  V+    +  +   L +
Sbjct: 665  MDDIFCGLQEAEETCNLKQLMVD-SHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQ 723

Query: 1747 INIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSF 1568
             ++ A++ VFRD+Q LVY Y+ K+NS+L M ++GSKG+L+KLV  S+CLGLQHS   LSF
Sbjct: 724  ASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSF 783

Query: 1567 RVPSMLSCSTRNHRDV----------DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRD 1418
             +P  LSC+  N + +          D   S I YAV+ENSFLSGL+P EC+ HSV+NRD
Sbjct: 784  SLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRD 843

Query: 1417 SSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSC 1238
            SSF +NAE+PGTL RK+ F MRD+Y AYDGTVRNAYGNQLVQF Y +    + +E E   
Sbjct: 844  SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESE--- 900

Query: 1237 QISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEV 1058
              +   DR  GG PVGSLAAC+ISEAAYSALD+P                     + +  
Sbjct: 901  --NNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTK 958

Query: 1057 QNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSE-ENCQTHLSPWIC 881
            Q  +LFLS+KL + +YG EYGA+ VK+HLE+V+F +++S   I+FS   + + H SPW+C
Sbjct: 959  QTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVC 1018

Query: 880  HFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGP-----E 716
            HFH+ KE ++K+ L + S+  +L   C S   + +  LP + + ++  C +A       +
Sbjct: 1019 HFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQD-CPLADSLTEDGD 1077

Query: 715  TSCIVGTVDIEEGCSN---PLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSR-T 548
            T C+  TV I E   N    L  ++D+++ FLLGTVI+GF E+++VDI WND P+  +  
Sbjct: 1078 TVCL--TVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPR 1135

Query: 547  SSSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWA 368
             S GEL LRV+M+ +  N +FW+ + N CLPIMDLIDW RS+P++ + +  AYGI++ W 
Sbjct: 1136 CSHGELYLRVTMSGE-GNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWK 1194

Query: 367  HFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQTS---TPSPFNQAC 197
            +F  SL+S T D+GK+I  EHLLL+++ LS TGEF+GL  KGL  Q       +PF QAC
Sbjct: 1195 YFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQAC 1254

Query: 196  FSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFN 20
            FS P    ++AAK   KD+LSG+LDA+AWG+   +GTGG F+I+YS K ++++K +D++N
Sbjct: 1255 FSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYN 1314

Query: 19   TLSTQ 5
             L  Q
Sbjct: 1315 LLGGQ 1319


>ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nicotiana sylvestris]
          Length = 1254

 Score =  603 bits (1554), Expect = e-169
 Identities = 331/711 (46%), Positives = 463/711 (65%), Gaps = 26/711 (3%)
 Frame = -1

Query: 2098 AWLQDTDDSIYSTLVRNYGDKTLDILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGN 1919
            +WL+D  ++++ +LV+++G  TLD+L++AQ +L EW+SMRG SVSLSD+Y+S +  SR N
Sbjct: 368  SWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSDPYSREN 427

Query: 1918 MVEEVSMGLQEATQAFRTKDFLINRTCMENLLRDSEDTHNCETFEVDDDNRLYD----LT 1751
            M++EV  GLQEA +    +  L+ R   + L    E +     F+++  + +      L+
Sbjct: 428  MIDEVFCGLQEAERLSYVQ-LLMTRYNHDFLAGSLEVSQKAMGFDLEFMSIMLQKSASLS 486

Query: 1750 EINIGAYQDVFRDVQRLVYHYASKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLS 1571
            + ++ A++ VFRD+Q LVY+YASKENS LAM+++GSKG+LLKLV  S+CLGLQ S  PLS
Sbjct: 487  QASVTAFKQVFRDIQNLVYNYASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLS 546

Query: 1570 FRVPSMLSCSTRN-----------HRDVDTPGSHILYAVIENSFLSGLDPLECYVHSVSN 1424
            FR+P  LSC   N           H   + PGS+I  AV+ENSFL+GL+PLEC+VHS++ 
Sbjct: 547  FRMPRQLSCDAWNNHKAHLPFEKAHNVPERPGSYIPCAVVENSFLAGLNPLECFVHSLTT 606

Query: 1423 RDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEK 1244
            RDSSF  +A++ GTL RK+MF+MRDLY+ YDGTVRNAYGNQ+VQFSY  +D++ ST +  
Sbjct: 607  RDSSFSGHADVSGTLNRKLMFFMRDLYIGYDGTVRNAYGNQIVQFSYYNTDQIASTYNRA 666

Query: 1243 SCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTA 1064
            S  I        GG PVGSLAAC+ISEAAYSALD P                       +
Sbjct: 667  SHAI--------GGHPVGSLAACAISEAAYSALDLPIGALEPSPLLNLKKILEAGVKSNS 718

Query: 1063 EVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEKVLFSEVISDTAIVFSEENCQ-THLSPW 887
              +  +LFLSK+L R  +G EYGA+EVK HLE++L S+++S   I FS    + TH SPW
Sbjct: 719  SEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTVMICFSPGTYKSTHSSPW 778

Query: 886  ICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGPETS- 710
            +CHFHI KE ++ + L + S+  AL     S   +   +LP +H+  +  CS+A  + + 
Sbjct: 779  VCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHITCKD-CSVAEMQKAN 837

Query: 709  ---CI-VGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS- 545
               CI V  V+  +   + L  +RD+++PFLL TVIKGF   +KVDI+W +LP  S++S 
Sbjct: 838  SKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVDILWRELPSTSKSSR 897

Query: 544  -SSGELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWA 368
             S+GEL L+V M+       FW+ + ++CL IMDLIDWE S+P++++D++ AYG++ AW 
Sbjct: 898  GSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEWSHPDNVHDLTVAYGVDVAWK 957

Query: 367  HFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQAC 197
            +F R+L S  S+ GK IL EHL+L AD L+ TGEF+ L  KGL  Q       SPF QAC
Sbjct: 958  YFLRNLNSAVSETGKKILPEHLVLAADCLTATGEFVPLNTKGLAQQRKCAGVISPFMQAC 1017

Query: 196  FSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQ 44
            FS P  +FV+AAK E  DDL G+L+A+AWGK    GTG +F+IIYS K Y+
Sbjct: 1018 FSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDIIYSGKGYE 1068