BLASTX nr result
ID: Papaver27_contig00055043
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00055043
(1133 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 119 2e-24
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 98 9e-20
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 103 2e-19
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript... 96 4e-19
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 86 8e-19
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 75 1e-17
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 79 1e-17
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 88 1e-16
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A... 93 2e-16
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 87 3e-16
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 91 1e-15
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 86 2e-14
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 86 3e-14
ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp.... 84 8e-14
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 84 1e-13
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop... 84 1e-13
dbj|BAA77394.1| SAE1-S9-protein [Brassica rapa] 83 2e-13
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 68 5e-13
ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308... 80 2e-12
ref|XP_004252416.1| PREDICTED: uncharacterized protein LOC101244... 58 3e-12
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 637
Score = 119 bits (299), Expect = 2e-24
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 8/232 (3%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPND-ASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDL 957
+W WV+KNLI+ FWS++ SW W+++L+Q+ ++ F + G +T D
Sbjct: 124 LWVQWVYKNLIRKETFWSVKENTSLGSWLWKKILKQRDKARLFHQMEVRSGTTTSFWHDH 183
Query: 956 WHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEA--LEEDLSHT--IVQMKEV 789
W P G+L + +L ++ VA +D H A L + +H + Q +
Sbjct: 184 WSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRKRHRADFLNQIENHIELVRQARSQ 243
Query: 788 DCDKSVSDLIAWKP---SSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFITWL 618
+ D+S+ WK S G C W VWF S P+ SF+TWL
Sbjct: 244 ESDRSL-----WKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWL 298
Query: 617 SLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGL 462
+ H RL T ++ KW ATCV CD++ +E +H+F SC + S IWI L
Sbjct: 299 AFHNRLATGDRLYKWNSEARATCVFCDEE--LETRDHLFFSCPYSSQIWIAL 348
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 97.8 bits (242), Expect(2) = 9e-20
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 8/232 (3%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSL-QVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDL 957
+W WV ++L++ FW + Q + SW W++LL+ ++V+K +G+G+ T D
Sbjct: 901 LWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDN 960
Query: 956 WHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEE--DLSHTIVQM--KEV 789
W G+L + + +L S V EE W D+ + I K
Sbjct: 961 WSDLGQLLERTGDRGLIDLGISRRMTV-----EEAWTNRRQRRHRNDVYNVIEDALKKSW 1015
Query: 788 DCDKSVSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCV---WSSLVWFKSHIPRQSFITWL 618
D D + W+ S F W ++WF P+ SF +WL
Sbjct: 1016 DTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWL 1075
Query: 617 SLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGL 462
+ H RL T +++ W C+ C + +E +H+F +C F S IW+ L
Sbjct: 1076 AAHGRLPTGDRMINWANGIATDCIFC--QGTLETRDHLFFTCSFTSVIWVDL 1125
Score = 26.9 bits (58), Expect(2) = 9e-20
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = -3
Query: 447 YTRHLNSCWKDEIDWCVTAFKGQGLVARIKKLILNSFVYHVWRERNNIIFQSKYSSADQV 268
YT H W+ I+ +T + + +++ + + +Y VWRERN ++A Q+
Sbjct: 1134 YTSH----WQSIIE-AITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQL 1188
Query: 267 GYAILSEVKVKMLSRSCKVGD 205
I +++ LS C GD
Sbjct: 1189 VGWIDKQIR-NQLSSICLKGD 1208
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 103 bits (256), Expect = 2e-19
Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 5/229 (2%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPND-ASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDL 957
+W WV+K+LI+ FWS++ SW WR++L+Q+ ++ F + G T D
Sbjct: 1048 LWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDH 1107
Query: 956 WHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQMKEVDCDK 777
W P G+L + +L ++ VA ++ H A + L+ Q++ D+
Sbjct: 1108 WCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRA--DFLNQIKSQIELARQDR 1165
Query: 776 SVS-DLIAWKPSSLGFXXXXXXXXXXXXXXXL---CVWSSLVWFKSHIPRQSFITWLSLH 609
S D WK F + C W VWF + P+ SF+TWL+ H
Sbjct: 1166 STDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFH 1225
Query: 608 ERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGL 462
RL T KI KW CV C ++ +E +H+F SC + S +W L
Sbjct: 1226 NRLTTSDKICKWNSGARYDCVFCGEE--LETRDHLFFSCPYSSHVWFSL 1272
>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 323
Score = 96.3 bits (238), Expect(2) = 4e-19
Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 7/219 (3%)
Frame = -1
Query: 1088 FWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDLWHPKGKLTDWVSQDSI 909
FW+L + SW WR+L + + +++ F + IG GE+ D W +G L D +
Sbjct: 10 FWTLNPYSSGSWIWRKLCKLRPLARPFLVCEIGSGETASFWQDNWTGQGPLIDLTGTNGP 69
Query: 908 NELCFSSDCKVAYFVDEEGWYFHEALEED----LSHTIVQMKEVDCDKSVSDLIAWKP-- 747
+ + V + + W+ + + L +++ E + D+ WKP
Sbjct: 70 RSVGMPLNAVVRDALRGDNWWLSSSRSRNPSIALLKSVLPSSESMIECQHDDVYKWKPDH 129
Query: 746 -SSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFITWLSLHERLKTRAKIVKWG 570
+ L W VWFK IP+ +FI W++ +RL TR ++ +WG
Sbjct: 130 HAPSNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWG 189
Query: 569 IMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGLLLK 453
+ CVLC+ D E +H+F C F + IW +++
Sbjct: 190 LNIPTVCVLCNVVD--ETHDHLFFQCQFSNEIWSFFMIR 226
Score = 26.6 bits (57), Expect(2) = 4e-19
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 405 WCVTAFKGQGLVARIKKLILNSFVYHVWRERN 310
W +A + L + I KL+ + VY +WRERN
Sbjct: 241 WLKSASSSKNL-SLIIKLLFQASVYLIWRERN 271
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 85.5 bits (210), Expect(2) = 8e-19
Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 12/232 (5%)
Frame = -1
Query: 1130 WTDWVHKNL-IKGRDFWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDLW 954
+T W ++L GR LQ+ N W WR+L + + ++ F + +G G + D W
Sbjct: 834 FTSWTARHLSFAGR----LQLLN---WIWRKLCKLRPFARPFIICEVGSGVTASFWHDNW 886
Query: 953 HPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQM------KE 792
G L + V + ++ W + + T++Q
Sbjct: 887 TDHGPLLHLTGPAGPLLAGLPLNSVVRDALRDDTWRISSSRSRNPVITLLQRVLPSAASL 946
Query: 791 VDCDKSVSDLIAWK-----PSSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFI 627
+DC D WK PS+ +W VWFK H+P+Q+FI
Sbjct: 947 IDCPHD--DTYLWKIGHHAPSNR--FSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFI 1002
Query: 626 TWLSLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIW 471
W+ H RL TR ++ +WG TCVLC+D D E H+F C F S IW
Sbjct: 1003 CWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLD--ESREHLFFRCQFSSEIW 1052
Score = 36.2 bits (82), Expect(2) = 8e-19
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = -3
Query: 405 WCVTAFKGQGLVARIKKLILNSFVYHVWRERNNIIFQSKYSSADQVGYAILSEVKVKM-- 232
W +TA + + + I KL+ ++ VY +WRERN I + A + I V+ ++
Sbjct: 1073 WTLTASRDRNITL-ITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIVRARLDP 1131
Query: 231 LSRSCKVGDSPQS 193
LSRS +V P S
Sbjct: 1132 LSRSSRVVSQPGS 1144
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 75.5 bits (184), Expect(2) = 1e-17
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 5/195 (2%)
Frame = -1
Query: 1040 LLEQKKVSKDFFMHIIGDGESTWILSDLWHPKGKLTDWVSQDSINELCFSSDCKVAYFVD 861
+++ K +F +G+GES D W G+L ++ +L D +V
Sbjct: 1 MIQLKPSIVEFMRCDMGNGESASFWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASR 60
Query: 860 EEGWYFHEALEED--LSHTIVQMKEVDCDKSVSDLIAWKPSS---LGFXXXXXXXXXXXX 696
W+ A ++ L + M V + D W+ ++ L
Sbjct: 61 NGDWFLPAARSDNSQLFLAALTMAPVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRV 120
Query: 695 XXXLCVWSSLVWFKSHIPRQSFITWLSLHERLKTRAKIVKWGIMQVATCVLCDDKDCVED 516
W+ +VWFK +IPR S ITW+S ERL TR ++ WG+ ++ VLC + D E
Sbjct: 121 HSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGD--ET 178
Query: 515 GNHIFHSCDFVSTIW 471
H+F C F IW
Sbjct: 179 HAHLFFECSFSLAIW 193
Score = 42.4 bits (98), Expect(2) = 1e-17
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3
Query: 363 IKKLILNSFVYHVWRERNNIIFQSKYSSADQVGYAILSEVKVKMLS 226
I KL+L S VYHVW+ERN IF S SSA + AI ++ ++LS
Sbjct: 227 ILKLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRTMRNRLLS 272
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 79.3 bits (194), Expect(2) = 1e-17
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 7/234 (2%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDLW 954
+W W H N ++ +FW+ + + SW W+ +L + ++K F +G+G+ D W
Sbjct: 893 LWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHW 952
Query: 953 HPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEE-----DLSHTIVQMKEV 789
G L + + V GW A +L T++
Sbjct: 953 SNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAP 1012
Query: 788 DCDKSVSDLIAW--KPSSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFITWLS 615
D+ D W + SS +W++ VW+K IP+ +F W++
Sbjct: 1013 SGDRG-EDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVA 1071
Query: 614 LHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGLLLK 453
RL RA+ W + + C +C + E +H+F C S IW +L +
Sbjct: 1072 HLNRLPVRARTTHWSTNRPSLCCVCQRE--TETRDHLFIHCTLGSLIWQQVLAR 1123
Score = 38.1 bits (87), Expect(2) = 1e-17
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -3
Query: 423 WKDEIDWCVTAFKGQGLVA-RIKKLILNSFVYHVWRERNNIIFQSKYSSADQVGYAILSE 247
WKD I+W ++ QG + +KKL + + ++H+W+ERN+ + + +S + I
Sbjct: 1133 WKDIIEWMLS---NQGSFSGTLKKLAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRS 1189
Query: 246 VKVKMLSR 223
++ +L+R
Sbjct: 1190 IRDSILAR 1197
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 87.8 bits (216), Expect(2) = 1e-16
Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 4/234 (1%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPND-ASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDL 957
+W W+ +I+ FWS + SW W++LL+ ++++K + +G ST D
Sbjct: 1198 LWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDH 1257
Query: 956 WHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQMKEVDCDK 777
W G+L D + +L + + + H A + + +Q + +
Sbjct: 1258 WSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQERE 1317
Query: 776 SVSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCV---WSSLVWFKSHIPRQSFITWLSLHE 606
+ D+ W+ F W VWF P+ SF+ WL++
Sbjct: 1318 AGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQN 1377
Query: 605 RLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGLLLKMVT 444
RL T +I W Q+ TC LC++ + E +H+F SC + S +W L ++++
Sbjct: 1378 RLSTGDRIKAWNSGQLVTCTLCNNAE--ETRDHLFFSCQYTSYVWEALTQRLLS 1429
Score = 26.2 bits (56), Expect(2) = 1e-16
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 357 KLILNSFVYHVWRERN 310
+ + + +YH+WRERN
Sbjct: 1457 RYVFQASIYHIWRERN 1472
>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 288
Score = 93.2 bits (230), Expect = 2e-16
Identities = 58/228 (25%), Positives = 98/228 (42%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDLW 954
+W WV ++KGR W + V SW +R +L ++ + K +G+G+ + D
Sbjct: 49 LWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPR 108
Query: 953 HPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQMKEVDCDKS 774
G + + I + D ++ F+ +G + + DL +++ V S
Sbjct: 109 IQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPS 168
Query: 773 VSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFITWLSLHERLKT 594
V D+ P S WS L+W +IP+ SF TWL++ +RL T
Sbjct: 169 VEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGT 228
Query: 593 RAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGLLLKM 450
R ++ +W +C+LC E +H+F C F IW +LL M
Sbjct: 229 RDRLSRWDSSIPLSCILCGRN--YESRDHLFFPCPFGWEIWSRILLFM 274
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 86.7 bits (213), Expect(2) = 3e-16
Identities = 57/214 (26%), Positives = 89/214 (41%)
Frame = -1
Query: 1112 KNLIKGRDFWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDLWHPKGKLT 933
+N + R+FW+L SW WRRL + ++V++ F + +G G + D W G L
Sbjct: 32 ENFLGQRNFWTLNSTTSDSWIWRRLCKLREVARPFVVCDVGSGVTAKFWHDNWTGHGPLI 91
Query: 932 DWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQMKEVDCDKSVSDLIAW 753
D V V +D G D H + + D + S++ +
Sbjct: 92 DLVGP--------LGPQTVGLPIDAVGLI-------DCQHDDSFIWKTDLH-APSNIFST 135
Query: 752 KPSSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFITWLSLHERLKTRAKIVKW 573
+SL W VWFK+H+P+ +FI W+ RL TR ++ W
Sbjct: 136 AKTSLALHPQNHIVP----------WYKAVWFKNHVPKHAFICWVVAWNRLHTRDRLRSW 185
Query: 572 GIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIW 471
G+ A C+LC+ D E H+F C F +W
Sbjct: 186 GLSIPAVCLLCNSHD--ESRAHLFFECPFCGAVW 217
Score = 26.2 bits (56), Expect(2) = 3e-16
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = -3
Query: 363 IKKLILNSFVYHVWRERNNIIFQSKYSSADQVGYAILSEVKVKMLSR 223
I +L ++VY +WRERN + ++ +V ++L ++++ + +R
Sbjct: 251 IIRLAFQAYVYAIWRERNLCL----HTGVARVFDSVLKDIQLTIRAR 293
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 90.5 bits (223), Expect = 1e-15
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 7/228 (3%)
Frame = -1
Query: 1133 IWTDW--VHKNLIKGRDFWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSD 960
+W W H +FW ++ SW WR LL + ++ F IG+G + +D
Sbjct: 165 LWVAWHLFHNLSTSVSNFWLIKEGTTDSWNWRCLLRLRPLASKFLFCSIGNGLTASFWAD 224
Query: 959 LWHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLS--HTIVQMKEVD 786
W P G L ++ D KVA V+ W + H + +
Sbjct: 225 SWTPFGPLLTFIGSDGPRNQRIPLCSKVADVVNGNRWLLPSPRSSNALNLHAFLTTLSIP 284
Query: 785 CDKSVSDLIAWKP---SSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFITWLS 615
V D WK S +GF W S VWFK P+ +F W++
Sbjct: 285 LQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEVEK-PWVSSVWFKGVTPKNAFNMWIT 343
Query: 614 LHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIW 471
+RL+T+ +++ WG + C LC + E +H+ SCDF ++W
Sbjct: 344 HQDRLRTKLRMIAWGFLVSPVCALC--QVGFETRDHLMLSCDFSVSVW 389
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana] gi|93007380|gb|ABE97193.1| hypothetical protein
At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 86.3 bits (212), Expect(2) = 2e-14
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSL-QVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDL 957
+W DWV K+L++G W++ + + SW W++LL+ + +K F + +GEST D
Sbjct: 60 LWVDWVKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDS 119
Query: 956 WHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQMKEVDCDK 777
W G L D + ++ D ++ + H + T +Q ++
Sbjct: 120 WSSLGCLYDKFGERGCIDMGIPKDSTLSSAIMTTRRRKHRQPLLNAVETEIQKQKQSRIV 179
Query: 776 SVSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCVWSSL------------VWFKSHIPRQS 633
+ D+ WK GF WS + +WF + P+ +
Sbjct: 180 TERDVALWKGKEDGFHPTFLSKE---------TWSQIRNTQPEMQGYRGIWFSNATPKYA 230
Query: 632 FITWLSLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWIGLL 459
+TWL + R+ T K+ W +C+ C K+ E H+F C + +W GL+
Sbjct: 231 LLTWLMVRNRIATGEKMGLWNQNTDTSCIFC--KNPNETREHLFFQCVYTRKVWNGLI 286
Score = 20.4 bits (41), Expect(2) = 2e-14
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = -3
Query: 351 ILNSFVYHVWRERNN 307
+L + ++ +WRER++
Sbjct: 321 VLQNSIHSIWRERDD 335
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 85.9 bits (211), Expect = 3e-14
Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 9/230 (3%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPND-ASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDL 957
+W W+ NL+K FW ++ SW W++LL+ ++V+K F + +G+ T D
Sbjct: 1125 LWVKWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSKIEVHNGQRTSFWYDD 1184
Query: 956 WHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQMKEVDCD- 780
W G++ +++ I +L D VA E W H + ++ + Q++ V
Sbjct: 1185 WSCMGRIMNFIGDKGIIDLGIKRDKLVA-----EVWDTHRS-RRHITDYLNQVENVIATS 1238
Query: 779 ----KSVSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCV---WSSLVWFKSHIPRQSFITW 621
K +D + W+ + + W VWF P+ SF W
Sbjct: 1239 KANRKEKADDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGVWFYQATPKFSFCVW 1298
Query: 620 LSLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIW 471
L+ +RL T ++ W + +CV C+ + +H+F +C + S +W
Sbjct: 1299 LAALDRLSTGDRMANWKGVSSGSCVFCNHP--TKSRDHLFFNCPYSSEVW 1346
>ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323307|gb|EFH53728.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 328
Score = 84.3 bits (207), Expect = 8e-14
Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 5/226 (2%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPNDA-SWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDL 957
+W W+ + W+L N + S +R+LL+ + FF IG+ +ST+ D
Sbjct: 44 LWVAWIRSKYLFTSPLWTLNGKNASYSRIFRKLLQLRPKVLKFFSIKIGNSDSTFFWWDP 103
Query: 956 WHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEED--LSHTIVQMKEVDC 783
W P G L ++ D L S VA E+GW A E L H+ + +
Sbjct: 104 WTPFGSLYHFLGSDGPTHLGISLFSTVAELRIEDGWSLPNARSEKQVLLHSFISTISIS- 162
Query: 782 DKSVSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCV--WSSLVWFKSHIPRQSFITWLSLH 609
S +D + W + + V W+ LVW K+ IPR +WL +
Sbjct: 163 --SSNDTLVWAVDGIPYKHFSSKAVWNAVRISKPVNYWAPLVWHKAAIPRHVITSWLFIL 220
Query: 608 ERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIW 471
R T ++ WG C+LC E NH+F +C F +W
Sbjct: 221 NRNPTLDRLSSWGYDVELDCLLCGLAH--ESRNHLFFNCVFSVEVW 264
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 84.0 bits (206), Expect = 1e-13
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 7/229 (3%)
Frame = -1
Query: 1133 IWTDWVHK--NLIKGRDFWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSD 960
+W W HK +L K FW+ SW W+ LL + V++ F +G+G D
Sbjct: 791 LWVAW-HKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFD 849
Query: 959 LWHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYF-----HEALEEDLSHTIVQMK 795
W P G L ++ + +L + K++ EGW +AL T + M
Sbjct: 850 NWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISMP 909
Query: 794 EVDCDKSVSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKSHIPRQSFITWLS 615
D D + GF + W+ VWFK P+ +F W +
Sbjct: 910 SDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPV-PWARAVWFKGATPKHAFHLWTA 968
Query: 614 LHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIWI 468
+RL T+ ++ WG+ TC LC E +H+F SCDF + + I
Sbjct: 969 HLDRLPTKVRLASWGMQIDTTCGLCSLHP--ETRDHLFLSCDFANFLCI 1015
>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 278
Score = 83.6 bits (205), Expect = 1e-13
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Frame = -1
Query: 995 IGDGESTWILSDLWHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEA--LEED 822
+ G +T D W P G+L + +L ++ VA +D H A L +
Sbjct: 3 VRSGTTTSFWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRKRHRADFLNQI 62
Query: 821 LSHT--IVQMKEVDCDKSVSDLIAWKP---SSLGFXXXXXXXXXXXXXXXLCVWSSLVWF 657
+H + Q + + D+S+ WK S G C W VWF
Sbjct: 63 ENHIELVRQARSQESDRSL-----WKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWF 117
Query: 656 KSHIPRQSFITWLSLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVST 477
S P+ SF+TWL+ H RL T ++ KW ATCV CD++ +E +H+F SC + S
Sbjct: 118 PSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEE--LETRDHLFFSCPYSSQ 175
Query: 476 IWIGL 462
IWI L
Sbjct: 176 IWIAL 180
>dbj|BAA77394.1| SAE1-S9-protein [Brassica rapa]
Length = 255
Score = 82.8 bits (203), Expect = 2e-13
Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 8/199 (4%)
Frame = -1
Query: 1040 LLEQKKVSKDFFMHIIGDGESTWILSDLWHPKGKLTDWVSQDSINELCFSSDCKVAYFVD 861
+L+ K D+ IGDG + D W G L +L + VA V
Sbjct: 1 MLQLKDSLSDYLRCGIGDGRTASFWFDYWTELGPLFSLFGSTGPRQLRIPLNASVADAVQ 60
Query: 860 EEGWYFHEALEE--DLSHTIVQMKEVDCDKSVSDLIAWKPSSLGFXXXXXXXXXXXXXXX 687
WY A E + I+ D + D+ W+ G
Sbjct: 61 NGHWYLPPARSEFAETLQIILSTITPPTDNNDIDIFYWRGGPTG--GFTNKFSSKVTWEL 118
Query: 686 LCV------WSSLVWFKSHIPRQSFITWLSLHERLKTRAKIVKWGIMQVATCVLCDDKDC 525
LCV W S V FK +PR +FITWL++ ERL TR +++ WG+ +CVLC+
Sbjct: 119 LCVPSPEVTWHSTVGFKEEVPRCTFITWLAMLERLPTRDRLISWGLTVPNSCVLCNGG-- 176
Query: 524 VEDGNHIFHSCDFVSTIWI 468
VE +H+F C F +W+
Sbjct: 177 VESHSHLFFECSFAVGVWL 195
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 68.2 bits (165), Expect(2) = 5e-13
Identities = 43/177 (24%), Positives = 62/177 (35%), Gaps = 4/177 (2%)
Frame = -1
Query: 989 DGESTWILSDLWHPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHT 810
DG+ D W P G L LC KVA + GW +
Sbjct: 814 DGKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALAL 873
Query: 809 IVQMKEV--DCDKSVSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCV--WSSLVWFKSHIP 642
++ + + C S D W V W+ VWFK +P
Sbjct: 874 LIHLTTIALPCFDSSPDTFVWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVP 933
Query: 641 RQSFITWLSLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIFHSCDFVSTIW 471
+ +F W+S RL TR ++ WG+ C LC + E +H+ C F + IW
Sbjct: 934 KHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRP--ESRDHLLLYCVFSAVIW 988
Score = 33.9 bits (76), Expect(2) = 5e-13
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -3
Query: 423 WKDEIDWCVTAFKGQGLVARIKKLILNSFVYHVWRERNNIIFQSKYSSADQVGYAILSEV 244
W + + W T + ++K+ + V+H+W++RNN++ S + S V + I E+
Sbjct: 1005 WAELLSW--TRINSSKAPSLLRKIAAQASVFHLWKQRNNVLHNSIFISPATVFHFIDREL 1062
Query: 243 K 241
+
Sbjct: 1063 E 1063
>ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308407 [Fragaria vesca
subsp. vesca]
Length = 177
Score = 80.1 bits (196), Expect = 2e-12
Identities = 40/161 (24%), Positives = 70/161 (43%)
Frame = -1
Query: 1133 IWTDWVHKNLIKGRDFWSLQVPNDASWYWRRLLEQKKVSKDFFMHIIGDGESTWILSDLW 954
+W+ W+ N ++ + FW + P SW WR+LL+ + + HIIGDG+ST+ D W
Sbjct: 15 LWSSWIKVNFLRDKSFWMVSTPQICSWNWRKLLKIRDFIRPSIKHIIGDGKSTYFWHDYW 74
Query: 953 HPKGKLTDWVSQDSINELCFSSDCKVAYFVDEEGWYFHEALEEDLSHTIVQMKEVDCDKS 774
HP G L + ++ S+ V+ V E W + + + ++ + + S
Sbjct: 75 HPFGPLLPRLGPGAMINSGIPSNALVSSIVKGESWCWPLSTNSAILRVASNVEGLIPNSS 134
Query: 773 VSDLIAWKPSSLGFXXXXXXXXXXXXXXXLCVWSSLVWFKS 651
D W PS+ G + W+ +V +S
Sbjct: 135 CKDSCIWLPSTSGIFSTASTMDQIWIHHPVVDWAKIVLLES 175
>ref|XP_004252416.1| PREDICTED: uncharacterized protein LOC101244351 [Solanum
lycopersicum]
Length = 169
Score = 57.8 bits (138), Expect(2) = 3e-12
Identities = 24/74 (32%), Positives = 43/74 (58%)
Frame = -1
Query: 680 VWSSLVWFKSHIPRQSFITWLSLHERLKTRAKIVKWGIMQVATCVLCDDKDCVEDGNHIF 501
+W+ L++ + P+ F W+ +++RL T ++ KWG+ TCVLC++++ E H+F
Sbjct: 8 IWTCLMFNNAARPKAYFTMWIMMNQRLVTVDRLAKWGVEVEKTCVLCENEE--ETAEHVF 65
Query: 500 HSCDFVSTIWIGLL 459
C F +W LL
Sbjct: 66 IQCSFARGLWGRLL 79
Score = 42.0 bits (97), Expect(2) = 3e-12
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 423 WKDEIDWCVTAFKGQGLVARIKKLILNSFVYHVWRERNNIIFQSKYSSADQV 268
W+ + WC+ KG+ A K IL +Y +W ERN+ +F+ K + DQ+
Sbjct: 92 WEHFVQWCIIHGKGKRAKAMKFKTILAEGIYGLWMERNSRVFEHKSKTEDQL 143