BLASTX nr result
ID: Papaver27_contig00048008
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00048008
(1751 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 76 3e-19
gb|ABK28243.1| unknown [Arabidopsis thaliana] 84 2e-17
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 84 2e-17
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript... 83 3e-17
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 84 4e-17
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 83 9e-17
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part... 73 2e-16
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 82 2e-15
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 82 2e-15
ref|NP_174632.1| RNA-directed DNA polymerase (reverse transcript... 77 5e-15
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 87 2e-14
ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcript... 73 7e-14
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204... 72 6e-12
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 79 7e-12
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop... 79 7e-12
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 74 7e-12
ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcr... 79 9e-12
ref|XP_004239601.1| PREDICTED: uncharacterized protein LOC101264... 78 1e-11
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript... 72 2e-11
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 76 4e-11
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 75.9 bits (185), Expect(2) = 3e-19
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Frame = +3
Query: 405 RDKRVADFMMAGQFLIP*CSHFAICTTSSQLQV-------VDYDVRDPDKIIWKVSKSGD 563
+D RV + G + +P A + +SQL + V ++ R D +W+ +
Sbjct: 51 QDARVVEASRNGDWFLP-----AARSDNSQLFLAALTMAPVPHESRGQDSFLWRNAAGSY 105
Query: 564 L---SFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHKRFKTRAKLRSWGLIE 734
L S ++T++ + V W K+VWFK IPR S + W++ +R TR +LR WG+
Sbjct: 106 LPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNI 165
Query: 735 NANCVFCDSGIEDEDHMFLKCLFS 806
++ V C +G E H+F +C FS
Sbjct: 166 PSSWVLCSNGDETHAHLFFECSFS 189
Score = 48.1 bits (113), Expect(2) = 3e-19
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +2
Query: 920 STVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLASKISDVDRPQIR 1099
+T+ KL S +YHVWKERN R+FTS S +R I + + + L+ +D+ P +
Sbjct: 225 TTILKLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRTMRNRLLSFPSADLRSPSLL 284
Query: 1100 SF 1105
F
Sbjct: 285 QF 286
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 83.6 bits (205), Expect(2) = 2e-17
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Frame = +3
Query: 513 DVRDPDKIIWKV---SKSGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLAC 683
D + D +WK + S S T+ L V W K VWFK+++P+H+F+CW+
Sbjct: 91 DCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVA 150
Query: 684 HKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*R 821
R TR +L++WGL A C+ C++ + H+F +C FS + R
Sbjct: 151 WNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWR 196
Score = 34.3 bits (77), Expect(2) = 2e-17
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +2
Query: 917 VSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLASKISDVDRPQI 1096
+ + +L F+S +Y +W+ERN+R+ + +S E + I + + S +P
Sbjct: 226 ICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDPLSRSTAHQPNA 285
Query: 1097 RSFMERW 1117
S + W
Sbjct: 286 LSLLGTW 292
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 83.6 bits (205), Expect(2) = 2e-17
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Frame = +3
Query: 513 DVRDPDKIIWKV---SKSGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLAC 683
D + D +WK + S S T+ L V W K VWFK+++P+H+F+CW+
Sbjct: 91 DCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVA 150
Query: 684 HKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*R 821
R TR +L++WGL A C+ C++ + H+F +C FS + R
Sbjct: 151 WNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWR 196
Score = 34.3 bits (77), Expect(2) = 2e-17
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +2
Query: 917 VSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLASKISDVDRPQI 1096
+ + +L F+S +Y +W+ERN+R+ + +S E + I + + S +P
Sbjct: 226 ICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDPLSRSTAHQPNA 285
Query: 1097 RSFMERW 1117
S + W
Sbjct: 286 LSLLGTW 292
>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 323
Score = 82.8 bits (203), Expect(2) = 3e-17
Identities = 44/119 (36%), Positives = 62/119 (52%)
Frame = +3
Query: 555 SGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHKRFKTRAKLRSWGLIE 734
S S +T+ L+ V W K VWFK IP+H+F+CW+A KR TR +L WGL
Sbjct: 133 SNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNI 192
Query: 735 NANCVFCDSGIEDEDHMFLKCLFSNFI*RGLLLKMGVVRDPSDAWDAKLQWCQVHFSSE 911
CV C+ E DH+F +C FSN I +++ G+ P + L W + SS+
Sbjct: 193 PTVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIRAGMT--PPHLFGPILLWLKSASSSK 249
Score = 34.3 bits (77), Expect(2) = 3e-17
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +2
Query: 917 VSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDV 1045
+S + KL F + +Y +W+ERN R+ T+ ++P TI+++V
Sbjct: 251 LSLIIKLLFQASVYLIWRERNCRIHTTHSRTPP----TIIKEV 289
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 83.6 bits (205), Expect(2) = 4e-17
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Frame = +3
Query: 513 DVRDPDKIIWKV---SKSGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLAC 683
D + D +WK + S S T+ L V W K VWFK+++P+H+F+CW+
Sbjct: 91 DCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVA 150
Query: 684 HKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*R 821
R TR +L++WGL A C+ C++ + H+F +C FS + R
Sbjct: 151 WNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWR 196
Score = 33.1 bits (74), Expect(2) = 4e-17
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +2
Query: 917 VSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSL 1051
+ + +L F+S +Y +W+ERN+R+ + +S E +I++D+ L
Sbjct: 226 ICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTE----SILKDIQL 266
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 82.8 bits (203), Expect(2) = 9e-17
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Frame = +3
Query: 513 DVRDPDKIIWKV---SKSGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLAC 683
D D +WK+ + S S +T+ L + V W K VWFK ++P+ +F+CW+
Sbjct: 948 DCPHDDTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVA 1007
Query: 684 HKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI 815
H R TR +LR WG CV C+ E +H+F +C FS+ I
Sbjct: 1008 HNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSEI 1051
Score = 32.7 bits (73), Expect(2) = 9e-17
Identities = 11/45 (24%), Positives = 29/45 (64%)
Frame = +2
Query: 917 VSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSL 1051
++ + KL F++ +Y +W+ERN R+ ++ ++ + I++++ L
Sbjct: 1083 ITLITKLLFHASVYFIWRERNLRIHSNSVRP----AHLIIKEIQL 1123
>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
gi|482569649|gb|EOA33837.1| hypothetical protein
CARUB_v10021318mg, partial [Capsella rubella]
Length = 290
Score = 73.2 bits (178), Expect(2) = 2e-16
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Frame = +3
Query: 522 DPDKIIWKVSKS---GDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHKR 692
+ D +W+ S + G S +T+ + V W K VWFK IP+H+F+ W+ R
Sbjct: 78 ESDFFLWRNSPNEPPGVFSTSKTWISTHPAGPLVPWFKSVWFKERIPKHAFISWVVIRNR 137
Query: 693 FKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSN 809
TR +LR WG+ + C+ C S E H+F +C +S+
Sbjct: 138 LTTRDRLRGWGMNVPSECLLCTSSAESRLHLFFECAYSH 176
Score = 41.2 bits (95), Expect(2) = 2e-16
Identities = 20/59 (33%), Positives = 37/59 (62%)
Frame = +2
Query: 923 TVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLASKISDVDRPQIR 1099
T+ KL F + +Y +W+ERN R+ TS KSP I++++ L + +K++ +D Q++
Sbjct: 211 TICKLIFQAVVYGLWRERNSRLHTSSFKSPA----IIIKEIQL-VMRAKLAGLDHCQLQ 264
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 81.6 bits (200), Expect(2) = 2e-15
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Frame = +3
Query: 525 PDKIIWKVSK--SGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHKRFK 698
PD +W V S T++ + DWTK VWFK ++P+H+F W++ R
Sbjct: 889 PDTFVWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLP 948
Query: 699 TRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*RGLLLKMGVVRDPSDAWDAK 878
TR +L +WG+ +C C S E DH+ L C+FS I + + ++ + ++W
Sbjct: 949 TRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSWAEL 1008
Query: 879 LQWCQVHFS 905
L W +++ S
Sbjct: 1009 LSWTRINSS 1017
Score = 29.6 bits (65), Expect(2) = 2e-15
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 914 AVSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDV 1045
A S ++K+ + ++H+WK+RN + S SP V + I +++
Sbjct: 1019 APSLLRKIAAQASVFHLWKQRNNVLHNSIFISPATVFHFIDREL 1062
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 82.4 bits (202), Expect(2) = 2e-15
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Frame = +3
Query: 513 DVRDPDKIIWKVSKSGDLSFKETYKT---LSGTVEDVDWTKLVWFKHNIPRHSFVCWLAC 683
D + D IWK + T KT L V W K VWFK+++P+H+F+CW+
Sbjct: 113 DCQHDDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVA 172
Query: 684 HKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*R 821
R TR +LRSWGL A C+ C+S E H+F +C F + R
Sbjct: 173 WNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWR 218
Score = 28.5 bits (62), Expect(2) = 2e-15
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 932 KLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLA-----SKISDVDRPQI 1096
+L F +++Y +W+ERN + T + V ++++D+ L A S+I+++ P
Sbjct: 253 RLAFQAYVYAIWRERNLCLHTGVAR----VFDSVLKDIQLTIRARLDPISRITEL-HPSA 307
Query: 1097 RSFMERW 1117
S + W
Sbjct: 308 PSVLRTW 314
>ref|NP_174632.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193496|gb|AEE31617.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 210
Score = 77.0 bits (188), Expect(2) = 5e-15
Identities = 41/136 (30%), Positives = 62/136 (45%)
Frame = +3
Query: 480 TTSSQLQVVDYDVRDPDKIIWKVSKSGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRH 659
T S +L V D+ V D S +T+ L + V W K VWFK P+H
Sbjct: 10 TLSGELDVYDWVVED--------KLCNGFSSAKTWAALRPRSDVVSWAKTVWFKGATPKH 61
Query: 660 SFVCWLACHKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*RGLLLKM 839
+F W+ R T+ +L SWG+ C C IED DH+FL C F+ F+ + +++
Sbjct: 62 AFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSVRL 121
Query: 840 GVVRDPSDAWDAKLQW 887
+ W+ + W
Sbjct: 122 ELPAFSFVVWNDLMDW 137
Score = 32.7 bits (73), Expect(2) = 5e-15
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 923 TVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLASKISDVDRPQIRS 1102
T++KL S +Y +WK+RN + E P V TI +++ A ++ + + R
Sbjct: 148 TLRKLIVQSVLYAIWKQRNNFLHNHETILPSVVFKTIDREIKNSITARRL----KKRFRR 203
Query: 1103 FMERW 1117
M W
Sbjct: 204 LMTLW 208
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 87.0 bits (214), Expect = 2e-14
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Frame = +3
Query: 513 DVRDPDKIIWKVSK---SGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLAC 683
D D +WKV S S +T++ L V W K VWF + +P+H+F+ W+
Sbjct: 544 DCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQVPKHAFISWVTA 603
Query: 684 HKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI 815
R TR +LRSWGLI A CV C+ E DH+F C FS+ I
Sbjct: 604 WNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFACRFSSRI 647
>ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana] gi|3184287|gb|AAC18934.1|
putative non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana] gi|330250497|gb|AEC05591.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis
thaliana]
Length = 211
Score = 73.2 bits (178), Expect(2) = 7e-14
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +3
Query: 549 SKSGDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHKRFKTRAKLRSWGL 728
+K DL T+ L+ E VDW K +WFK IP+H+F+ W+ R T+ ++ SWG
Sbjct: 20 NKEIDLEATATWLHLNPIGERVDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGF 79
Query: 729 IENANCVFCDSGIEDEDHMFLKCLFS 806
I C+FC++ E H+F C F+
Sbjct: 80 IFPPLCLFCNTHDETRQHLFFDCEFA 105
Score = 32.7 bits (73), Expect(2) = 7e-14
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 917 VSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLASKISDVDR--P 1090
V+T+ +L ++ +Y +WKERN R+ S + P ++ V ++C +S R P
Sbjct: 140 VTTILRLSHHASVYTIWKERNARLHDSASR-PAAALILEIKSV-IRCHLDPLSRAQRLGP 197
Query: 1091 QIRSFMERW 1117
SF+ W
Sbjct: 198 NRISFLATW 206
>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
Length = 282
Score = 72.4 bits (176), Expect(2) = 6e-12
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 2/162 (1%)
Frame = +3
Query: 408 DKRVADFM-MAGQFLIP*CSHFAICTTSSQLQVVDYDVRDPDKIIWKVSKSGDLSFKETY 584
D R+ DFM G + P + + ++Q V D+ +W S +
Sbjct: 56 DARLVDFMGRDGDWRWP-LVYLDLMDIWDRVQGVRLSPSVEDRWVWVPGSHDSFSITSAW 114
Query: 585 KTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHKRFKTRAKLRSWGLIENANCVFCDSG 764
+T+ V W+ L+W NIP+HSF WLA R TR +L W +C+ C
Sbjct: 115 ETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLGTRGRLSRWDRSIPLSCLLCGGN 174
Query: 765 IEDEDHMFLKCLFS-NFI*RGLLLKMGVVRDPSDAWDAKLQW 887
E DH+F C F R LLLK R + W +L W
Sbjct: 175 YESRDHLFFSCHFGWEIWSRILLLKSSSHR--TGYWGVELSW 214
Score = 26.9 bits (58), Expect(2) = 6e-12
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 932 KLCFNSFIYHVWKERNKRVFTSEIKSP 1012
+L + + IY +W+ERN R+ I+ P
Sbjct: 230 RLLWCATIYFIWQERNHRLHGGSIREP 256
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 79.0 bits (193), Expect = 7e-12
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = +3
Query: 519 RDPDKIIWKVSKS---GDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHK 689
++ D+ +WK + G S +T++ + + +W + VWF + P++SFV WLA H
Sbjct: 243 QESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHN 302
Query: 690 RFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI 815
R T +L W A CVFCD +E DH+F C +S+ I
Sbjct: 303 RLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQI 344
>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 278
Score = 79.0 bits (193), Expect = 7e-12
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = +3
Query: 519 RDPDKIIWKVSKS---GDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHK 689
++ D+ +WK + G S +T++ + + +W + VWF + P++SFV WLA H
Sbjct: 75 QESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHN 134
Query: 690 RFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI 815
R T +L W A CVFCD +E DH+F C +S+ I
Sbjct: 135 RLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQI 176
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 74.3 bits (181), Expect(2) = 7e-12
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Frame = +3
Query: 528 DKIIWKVSKS---GDLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLACHKRFK 698
DK++W+ S ++T+ T V W K++WF H P++SF WLA H R
Sbjct: 1023 DKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLP 1082
Query: 699 TRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI 815
T ++ +W +C+FC +E DH+F C F++ I
Sbjct: 1083 TGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVI 1121
Score = 24.6 bits (52), Expect(2) = 7e-12
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 926 VKKLCFNSFIYHVWKERNKR 985
+++ F + IY VW+ERN R
Sbjct: 1157 LRRYVFQATIYIVWRERNGR 1176
>ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|98962153|gb|ABF59406.1| unknown protein [Arabidopsis
thaliana] gi|332004916|gb|AED92299.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 209
Score = 78.6 bits (192), Expect = 9e-12
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Frame = +3
Query: 477 CTTSSQLQVVDYDVRDPDKIIWKVSKSG---DLSFKETYKTLSGTVEDVDWTKLVWFKHN 647
C S + + D D D +WKV S S T+ L+ E VDW K +WFK
Sbjct: 95 CLPLSSVVNLQVDAED-DLFMWKVGGSEASVGFSSAATWIHLNPVGEKVDWHKAIWFKGR 153
Query: 648 IPRHSFVCWLACHKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI 815
IP+H+F+ W+ R TR KL SWGL + C+ C++ E H+F C+F+ I
Sbjct: 154 IPKHAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFFDCVFAGEI 209
>ref|XP_004239601.1| PREDICTED: uncharacterized protein LOC101264932 [Solanum
lycopersicum]
Length = 296
Score = 77.8 bits (190), Expect = 1e-11
Identities = 34/92 (36%), Positives = 57/92 (61%)
Frame = +1
Query: 19 RVGGAEVTPSHYQEFWECTHEAHIFDLRYSGCFYTWSNKQGGDCRTASKIDRVLINMEWL 198
R+ G VT + ++ EC + + +L+++G +YTW+NKQ G R +S+IDR N EW+
Sbjct: 24 RLAGVPVTTNEIKDLGECVRDMGVIELQWTGNYYTWTNKQCGKDRISSRIDRAFGNDEWM 83
Query: 199 EMFHESNVEFLLPCISDHSPGIFSIFDGKQHG 294
+ + NV++ +P ISDHS + + +QHG
Sbjct: 84 DKWGHVNVDYGIPSISDHSSMVLVLQKTQQHG 115
>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 289
Score = 71.6 bits (174), Expect(2) = 2e-11
Identities = 42/148 (28%), Positives = 67/148 (45%)
Frame = +3
Query: 465 HFAICTTSSQLQVVDYDVRDPDKIIWKVSKSGDLSFKETYKTLSGTVEDVDWTKLVWFKH 644
H + TT S + D D ++ V G S T+ + ++DW K VWFK
Sbjct: 81 HISTITTPSPATIED----SFDWVVGGVVCQG-FSSARTWDAIRPRAPELDWAKAVWFKG 135
Query: 645 NIPRHSFVCWLACHKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*RG 824
+P+H+F W++ R TR +L SWG I++ +C C E DH+ C F+ + R
Sbjct: 136 AVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWRL 195
Query: 825 LLLKMGVVRDPSDAWDAKLQWCQVHFSS 908
++ + +W L W + SS
Sbjct: 196 AFSRLCPRQRLFCSWAELLSWMRSSSSS 223
Score = 25.8 bits (55), Expect(2) = 2e-11
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +2
Query: 914 AVSTVKKLCFNSFIYHVWKERNKRVFTSEIKSPEGVRYTIVQDVSLKCLASKISDVDRPQ 1093
A S ++K+ ++ IY++W++RN V + ++ + + IV D ++ + S S R +
Sbjct: 224 APSLLRKVSAHAIIYNIWRQRN-NVLHNNLRIAPIIIFKIV-DREIRNIIS--SRYHRKR 279
Query: 1094 IRSFMERW 1117
R+ M W
Sbjct: 280 WRNLMVLW 287
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 76.3 bits (186), Expect = 4e-11
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 4/160 (2%)
Frame = +3
Query: 516 VRDPDKIIWKVSKSG----DLSFKETYKTLSGTVEDVDWTKLVWFKHNIPRHSFVCWLAC 683
V D ++WK K G S KET+ +W + +WF H P++SF+ WLA
Sbjct: 238 VETEDVVLWK-GKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATPKYSFITWLAT 296
Query: 684 HKRFKTRAKLRSWGLIENANCVFCDSGIEDEDHMFLKCLFSNFI*RGLLLKMGVVRDPSD 863
R T ++ SW N +CVFC E +H+F C +S + GL K+ + R S
Sbjct: 297 KNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKL-LTRHYST 355
Query: 864 AWDAKLQWCQVHFSSEGQFQQLRSSVLIVLFTMFGRKGTK 983
W L+ + LR + I++++++ + ++
Sbjct: 356 DWTTILKLLTDKTLGNNRLFLLRYAFQILVYSIWKERNSR 395