BLASTX nr result
ID: Papaver27_contig00047825
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00047825
(1190 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 154 3e-45
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 146 7e-43
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 144 1e-42
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 137 3e-40
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 121 3e-39
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 130 6e-38
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 128 8e-38
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 129 1e-37
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 125 2e-37
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 124 5e-35
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 117 3e-34
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript... 113 9e-33
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 113 1e-31
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 110 4e-31
ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein A... 104 8e-31
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 87 1e-30
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 139 2e-30
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 134 1e-28
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 101 2e-28
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 105 4e-28
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 154 bits (388), Expect(2) = 3e-45
Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 10/295 (3%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP + E+N I FLW+G +L ++ V IC P + GGLGLR + NV LK
Sbjct: 236 LPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKL 295
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDS--SW*WRRILDHRSTATKFVFHLIG 537
IW + SN D++WVK NL+K + + TP S SW W+++L +R TA F +
Sbjct: 296 IWRVTSNDDSLWVKWSKMNLLKQESFWSL-TPNSSLGSWMWKKMLKYRETAKPFSRVEVN 354
Query: 536 DGDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLKNDLDSI 357
+G DNW G G+++ + + + D + S K V AW+ K+ + +
Sbjct: 355 NGARTSFWFDNWSGMGHLMDVTGQRGQID-LGISRNKT----VAEAWSNRRRRKHRTEQL 409
Query: 356 --IEDVKNVK--TENLIDDRVVCTVGKSG----DFVLRDTYNSLRHKETKNKWHKLVWFS 201
IE N K T NL+ + GK F +DT+N +R K + W+K VWFS
Sbjct: 410 NDIEAALNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFS 469
Query: 200 SCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
P+ F W+ ++ +L T +++ W + C+T +E H+FF C Y+
Sbjct: 470 HSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYA 524
Score = 56.6 bits (135), Expect(2) = 3e-45
Identities = 33/86 (38%), Positives = 48/86 (55%)
Frame = -2
Query: 1129 VDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYF 950
V D Y + F +G LP+RYL L L++ RL +D PL ++++ RI +W R L F
Sbjct: 153 VSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSF 212
Query: 949 ARRVLLIKAVLNSMLIHVLCFLRRPS 872
A R+ LI +VL S + + R PS
Sbjct: 213 AGRLNLISSVLWSTMNFWMSAFRLPS 238
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 146 bits (368), Expect(2) = 7e-43
Identities = 88/296 (29%), Positives = 146/296 (49%), Gaps = 11/296 (3%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP++ INE+N I LW+G +L K+ V +IC P K GGLGL+ + N LK
Sbjct: 552 LPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKL 611
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKT-PVDSSW*WRRILDHRSTATKFVFHLIGD 534
IW ++S +D++WVK NL+K + + T SW WRR+L HR A F + +
Sbjct: 612 IWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNN 671
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYL-VDGAWTLNPNLKNDLDSI 357
G N DNW +G ++++ D +S ++ + AW+ ++ ++ +
Sbjct: 672 GVNTSFWFDNWSEKGPLINLTGARGAID------MGISRHMTLAEAWSRRRRKRHRVEIL 725
Query: 356 IE---------DVKNVKTENLIDDRVVCTVGKSGDFVLRDTYNSLRHKETKNKWHKLVWF 204
E +N++ E+ I R V K+ F +DT+N +R + WHK VWF
Sbjct: 726 NEFEEILLQKYQHRNIELEDAILWRGKEDVFKA-RFSTKDTWNHIRTSSNQRAWHKGVWF 784
Query: 203 SSCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
+ P+ F W+ ++ +L T +++ W + C++ +E H+FF C YS
Sbjct: 785 AHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYS 840
Score = 56.2 bits (134), Expect(2) = 7e-43
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = -2
Query: 1153 RVIFFLFFVDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILS 974
+ +L V D + + F VG LP+RYL L L++ RL D PLID+++ RI
Sbjct: 461 KTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGM 520
Query: 973 WKDRDLYFARRVLLIKAVLNSM 908
W R L FA R+ LI +VL S+
Sbjct: 521 WTSRYLSFAGRLSLINSVLWSI 542
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 144 bits (363), Expect(2) = 1e-42
Identities = 91/303 (30%), Positives = 144/303 (47%), Gaps = 9/303 (2%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP+K I EL + FLW+G ++ + + +C P GGLGLR + N LK
Sbjct: 831 LPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKL 890
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPV-DSSW*WRRILDHRSTATKFVFHLIGD 534
+W I+S+ +++WVK V ++L++N +K V SW W+++L +R A +G+
Sbjct: 891 VWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGN 950
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWT--LNPNLKNDLDS 360
G DNW G +L D + S V+ AWT +ND+ +
Sbjct: 951 GKQTSFWYDNWSDLGQLLERTGDRGLID-LGISRRMT----VEEAWTNRRQRRHRNDVYN 1005
Query: 359 IIEDV--KNVKTENLIDDRVVCTVGKSG----DFVLRDTYNSLRHKETKNKWHKLVWFSS 198
+IED K+ T +D+V+ GKS F RDT++ R + WHK++WFS
Sbjct: 1006 VIEDALKKSWDTRTETEDKVLWR-GKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSH 1064
Query: 197 CVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYSIVM*KH 18
P+ F W+ +L T +++ W + I C LE H+FF C ++ V+
Sbjct: 1065 ATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVD 1124
Query: 17 LIR 9
L R
Sbjct: 1125 LAR 1127
Score = 57.4 bits (137), Expect(2) = 1e-42
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = -2
Query: 1087 FEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLIKAVLNSM 908
F G LP+RYL L L++ RL DC+PL+++++ RI SW R L +A R+ LI +VL S+
Sbjct: 762 FSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSI 821
Query: 907 LIHVLCFLRRP 875
L R P
Sbjct: 822 CNFWLAAFRLP 832
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 137 bits (344), Expect(2) = 3e-40
Identities = 88/296 (29%), Positives = 137/296 (46%), Gaps = 10/296 (3%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LPK I E+ + +FLW+G + + V S +C P GGLG+R N + LK
Sbjct: 95 LPKGCIREIESMCARFLWSGGTDEHHKAKVSWSTVCLPKAEGGLGVRKFTEWNTALNLKL 154
Query: 710 IWNIISNKDTIWVK--CVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFHLIG 537
IW + SN ++WV H + +K SW WR +L R A+KF+F IG
Sbjct: 155 IWLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTDSWNWRCLLRLRPLASKFLFCSIG 214
Query: 536 DGDNKKLSKDNWVGQGNILHIF----PRHMKYD*MNHSEAKVSSYLVDGAWTL-NPNLKN 372
+G D+W G +L PR+ + + KV+ + W L +P N
Sbjct: 215 NGLTASFWADSWTPFGPLLTFIGSDGPRNQRIPLCS----KVADVVNGNRWLLPSPRSSN 270
Query: 371 DLD-SIIEDVKNVKTENLIDDRVVCTVGKSGD--FVLRDTYNSLRHKETKNKWHKLVWFS 201
L+ ++ + L++D + V D F T+N+LRHKE + W VWF
Sbjct: 271 ALNLHAFLTTLSIPLQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEVEKPWVSSVWFK 330
Query: 200 SCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYSI 33
P+ F +W+ Q +L+T+ +++ WG V+PV LC E H+ C +S+
Sbjct: 331 GVTPKNAFNMWITHQDRLRTKLRMIAWGFLVSPVCALCQVGFETRDHLMLSCDFSV 386
Score = 56.6 bits (135), Expect(2) = 3e-40
Identities = 31/89 (34%), Positives = 51/89 (57%)
Frame = -2
Query: 1141 FLFFVDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDR 962
FL VDD+ Y+ GF +LP+RYL L LMS +L + PL+ K+K ++ W +
Sbjct: 9 FLAGVDDV-EYAAVYAYGFPFANLPIRYLGLPLMSRKLKISEFEPLVVKIKAKLNFWAVK 67
Query: 961 DLYFARRVLLIKAVLNSMLIHVLCFLRRP 875
L FA R+ L+ +V++ +++ + R P
Sbjct: 68 SLSFAGRLQLLSSVISGIVVFWMSTFRLP 96
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 121 bits (304), Expect(2) = 3e-39
Identities = 80/290 (27%), Positives = 129/290 (44%), Gaps = 5/290 (1%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LPK + E+ +F FLW+G DL K+ + S++C + GGLGL+ + N LK
Sbjct: 978 LPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKL 1037
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVD-SSW*WRRILDHRSTATKFVFHLIGD 534
IW I+S +D++WVK V+++LI+ + +K SW WR+IL R A F +
Sbjct: 1038 IWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRS 1097
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLKNDLDSII 354
G D+W G + D + A V+ V + + L+ I
Sbjct: 1098 GTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAE--VMNTHRRKRHRADFLNQIK 1155
Query: 353 EDVKNVKTENLID-DRVVCTVGK---SGDFVLRDTYNSLRHKETKNKWHKLVWFSSCVPR 186
++ + + D DR + + F T+ +R + W++ VWFS+ P+
Sbjct: 1156 SQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPK 1215
Query: 185 QCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
F+ W+ +L T K+ W + C LE H+FF C YS
Sbjct: 1216 YSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYS 1265
Score = 68.6 bits (166), Expect(2) = 3e-39
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = -2
Query: 1108 SIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLI 929
SI Q FE+G+LP++YL L L++ R+ D +PL++K++ RI SW +R L FA R+ LI
Sbjct: 902 SILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLI 961
Query: 928 KAVLNSMLIHVLCFLRRP 875
K+VL+S+ L R P
Sbjct: 962 KSVLSSITNFWLSVFRLP 979
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 130 bits (328), Expect(2) = 6e-38
Identities = 82/291 (28%), Positives = 136/291 (46%), Gaps = 11/291 (3%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP+ I E+ + FLW+G +L K+ + +++C P GGLGLR + N LK
Sbjct: 384 LPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKL 443
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVD-SSW*WRRILDHRSTATKFVFHLIGD 534
+W IIS+ D++WVK V NL+K + +K + SW W++IL +R A +F +G+
Sbjct: 444 VWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGN 503
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTL------NPNLKN 372
G++ D+W G ++ + D M S + V AWT + N
Sbjct: 504 GESTSFWFDDWSLLGRLIDVAGIRGTID-MGISR----TMSVADAWTSRRRRHHRQEILN 558
Query: 371 DLDSIIEDVKNVKTENLIDDRVVCTVGKS----GDFVLRDTYNSLRHKETKNKWHKLVWF 204
++ ++ +T+ RV+ GK+ F ++T+N LR + WHK VWF
Sbjct: 559 TIEEVLSTQHQKRTQQQQQGRVLWK-GKNDIYKDKFSTKNTWNYLRTTSNEVAWHKGVWF 617
Query: 203 SSCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFF 51
P+ F +W+ +L T +++ W C +E H+FF
Sbjct: 618 PHATPKYSFCLWLAAHDRLATGARMIKWNRGETGDCTFCRQGIETRDHLFF 668
Score = 55.1 bits (131), Expect(2) = 6e-38
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = -2
Query: 1087 FEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLIKAVL 917
FEVG LP+RYL L L++ RL D PLI++++ RI SW R L FA R LI +++
Sbjct: 315 FEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSII 371
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 128 bits (322), Expect(2) = 8e-38
Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 10/295 (3%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP++ I E++ + FLW+G +++ + + +C P GGLGLR + N LK
Sbjct: 478 LPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKL 537
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVD-SSW*WRRILDHRSTATKFVFHLIGD 534
+W IISN +++W K V E LI+ + + +K SW WR+IL R A F +G+
Sbjct: 538 VWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGN 597
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLKND---LD 363
G++ D+W G ++ D EA V+ AWT ++ L+
Sbjct: 598 GESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVAD-----AWTRRSRRRHRTSLLN 652
Query: 362 SIIEDVKNVKTENLIDDRVVCTVGKSG----DFVLRDTYNSLRHKETKNKWHKLVWFSSC 195
I E + + + + V GK+ F RDT++ ++ + WHK VWF
Sbjct: 653 EIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHA 712
Query: 194 VPRQCFIVWMCVQRKLKTRFKVLFWGM--NVNPVFILCNTMLEDDFHMFFGCRYS 36
P+ W+ + +L T ++L W +V+ +LC + H+FF C Y+
Sbjct: 713 TPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYA 767
Score = 57.0 bits (136), Expect(2) = 8e-38
Identities = 35/85 (41%), Positives = 46/85 (54%)
Frame = -2
Query: 1129 VDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYF 950
V I I F+VG LP+RYL L L++ RL D PL++++K RI +W R F
Sbjct: 395 VSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSF 454
Query: 949 ARRVLLIKAVLNSMLIHVLCFLRRP 875
A R LIK+VL S+ L R P
Sbjct: 455 AGRFNLIKSVLWSICNFWLAAFRLP 479
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 129 bits (325), Expect(2) = 1e-37
Identities = 85/292 (29%), Positives = 140/292 (47%), Gaps = 7/292 (2%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP I E++ I FLW+G +L K+ V S +C P GGLG+R + N LK
Sbjct: 87 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKL 146
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVD-SSW*WRRILDHRSTATKFVFHLIGD 534
IW ++S+ ++WV+ + L++ + SW W++IL HR+ A+ FV H I +
Sbjct: 147 IWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHN 205
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLKNDLDSII 354
G N DNW G ++ + D A V+ +V+ + ++D I
Sbjct: 206 GSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRH---RHDTLLRI 262
Query: 353 EDV-KNVKTENLIDDRVVCTVGKSGD-----FVLRDTYNSLRHKETKNKWHKLVWFSSCV 192
EDV V+ + L +GD F ++T+ + R + K W+K VWFS
Sbjct: 263 EDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHAT 322
Query: 191 PRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
P+ + W+ ++ +L T ++L W + +LC+ ++E H+FF C YS
Sbjct: 323 PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 374
Score = 55.1 bits (131), Expect(2) = 1e-37
Identities = 31/86 (36%), Positives = 47/86 (54%)
Frame = -2
Query: 1129 VDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYF 950
V D I F G+LP+RYL L L++ ++ D PL++K++ RI W R L F
Sbjct: 4 VKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSF 63
Query: 949 ARRVLLIKAVLNSMLIHVLCFLRRPS 872
A R+ LI +V++S+ + R PS
Sbjct: 64 AGRLQLISSVIHSLTNFWMSAFRLPS 89
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
[Arabidopsis thaliana]
Length = 657
Score = 125 bits (315), Expect(2) = 2e-37
Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 12/301 (3%)
Frame = -1
Query: 902 SCSVLPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDV 723
S +LP + +++L + FLW+G + ++ + +C + GGLGL+ +++ N +
Sbjct: 368 SIFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGLKRLSSWNKVL 427
Query: 722 YLKHIWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFHL 543
LK IW + + ++WV V W WR++ R A FV
Sbjct: 428 ALKLIWLLFTASGSLWVSWVR-------------------WVWRKLCKLREVARPFVICE 468
Query: 542 IGDGDNKKLSKDNWVGQGNILHIF----PRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLK 375
+G G + +DNW G G ++H+ P+ + ++ + + D W + +
Sbjct: 469 VGSGITARFWQDNWTGHGPLIHLTGLTGPQLVG---LSITSVVRDAIRNDDWWIASSRSR 525
Query: 374 ND----LDSIIEDVKN-VKTENLIDDRVVCTVGK---SGDFVLRDTYNSLRHKETKNKWH 219
N L S++ V N V E+ DD + VG S F DT+ +L+ WH
Sbjct: 526 NPVILLLKSLLPPVGNLVDCEH--DDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWH 583
Query: 218 KLVWFSSCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRY 39
K VWF++ VP+ FI W+ +L TR ++ WG+ V +LCN + E H+FF CR+
Sbjct: 584 KAVWFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFACRF 643
Query: 38 S 36
S
Sbjct: 644 S 644
Score = 58.5 bits (140), Expect(2) = 2e-37
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = -2
Query: 1093 LGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLIKAVLN 914
LG GSLP+RYL + LMS ++ D PL+D++ +R SW R L FA R+ L+K+V+
Sbjct: 301 LGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIY 360
Query: 913 SML 905
S +
Sbjct: 361 STI 363
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 124 bits (310), Expect(2) = 5e-35
Identities = 83/289 (28%), Positives = 132/289 (45%), Gaps = 11/289 (3%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP+ I E++ + +LW+G +L + + + +C P + GGLGLR + N LK
Sbjct: 161 LPRDCIREIDKMCSAYLWSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEANDVCCLKL 220
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVD-SSW*WRRILDHRSTATKFVFHLIGD 534
IW IIS+ D++WVK + +L+K ++ SW WR+IL R A I +
Sbjct: 221 IWRIISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINN 280
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAW---TLNPNLKNDLD 363
G D+W G ++ D + A V AW + N L+
Sbjct: 281 GAQTSFWYDDWSDLGRLIESAGDRGAIDLGINKHATVVE-----AWGNRRRRRHRANFLN 335
Query: 362 SIIED-VKNVKTENLIDDRVVCTVGKSGD------FVLRDTYNSLRHKETKNKWHKLVWF 204
+ E V + + N +D C + K + F +DT+N +R K W+K VWF
Sbjct: 336 RVEERLVLSWNSRNQAED---CALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWF 392
Query: 203 SSCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHM 57
+ +P+ F +W+ V +L T ++ W M V+ ILCN LE H+
Sbjct: 393 AQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNNALESRDHL 441
Score = 52.4 bits (124), Expect(2) = 5e-35
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = -2
Query: 1141 FLFFVDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDR 962
+L + T + F VG+LP+RYL L L++ + D +PLID +K +I SW R
Sbjct: 74 YLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPLIDHIKQKICSWSAR 133
Query: 961 DLYFARRVLLIKAVLNSM 908
L + R+ LI ++L S+
Sbjct: 134 FLSYTGRLNLISSILWSI 151
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 117 bits (293), Expect(2) = 3e-34
Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 10/299 (3%)
Frame = -1
Query: 902 SCSVLPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDV 723
S +LP I ++ + +FLW+ V S++C P GG+GLR A +N +
Sbjct: 717 SSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTL 776
Query: 722 YLKHIWNIISNKDTIWVKCVHENLI-KNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFH 546
YL+ IW + SN ++WV ++ + K+ + SW W+ +L R A +F+
Sbjct: 777 YLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRC 836
Query: 545 LIGDGDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTL-NPNLKND 369
+G+G + DNW G ++ D H AK+S W++ +P
Sbjct: 837 NVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQA 896
Query: 368 LD--------SIIEDVKNVKTENLIDDRVVCTVGKSGDFVLRDTYNSLRHKETKNKWHKL 213
L S+ D +++ + + + D VC F T+++LR W +
Sbjct: 897 LSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQ-----GFSAAATWSALRPSSAPVPWARA 951
Query: 212 VWFSSCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
VWF P+ F +W +L T+ ++ WGM ++ LC+ E H+F C ++
Sbjct: 952 VWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFA 1010
Score = 56.2 bits (134), Expect(2) = 3e-34
Identities = 32/74 (43%), Positives = 46/74 (62%)
Frame = -2
Query: 1126 DDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFA 947
D + SY GF++GSLP+RYL L LMS +L + PLI+K+ R SW R L FA
Sbjct: 645 DSMASY------GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFA 698
Query: 946 RRVLLIKAVLNSML 905
RV L+ +V++ ++
Sbjct: 699 GRVQLLASVISGIV 712
>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 746
Score = 113 bits (283), Expect(2) = 9e-33
Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 6/291 (2%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP I E++ I FLW+G +L K+ V S +C P GGLG+R + N +
Sbjct: 87 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSF--- 143
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFHLIGDG 531
W+I N SW W++IL HR+ A+ FV H I +G
Sbjct: 144 -WSISGNTTL------------------------GSWMWKKILKHRALASGFVKHDIHNG 178
Query: 530 DNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLKNDLDSIIE 351
N DNW G ++ + D A V+ +V+ + ++D IE
Sbjct: 179 SNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRH---RHDTLLRIE 235
Query: 350 DV-KNVKTENLIDDRVVCTVGKSGD-----FVLRDTYNSLRHKETKNKWHKLVWFSSCVP 189
DV V+ + L +GD F ++T+ + R + K W+K VWFS P
Sbjct: 236 DVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATP 295
Query: 188 RQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
+ + W+ ++ +L T ++L W + +LC+ ++E H+FF C YS
Sbjct: 296 KYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 346
Score = 55.1 bits (131), Expect(2) = 9e-33
Identities = 31/86 (36%), Positives = 47/86 (54%)
Frame = -2
Query: 1129 VDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYF 950
V D I F G+LP+RYL L L++ ++ D PL++K++ RI W R L F
Sbjct: 4 VKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSF 63
Query: 949 ARRVLLIKAVLNSMLIHVLCFLRRPS 872
A R+ LI +V++S+ + R PS
Sbjct: 64 AGRLQLISSVIHSLTNFWMSAFRLPS 89
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 113 bits (283), Expect(2) = 1e-31
Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 4/289 (1%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP I E+ + FLW+G L K+ + S IC P K GGLG++ +A N LK
Sbjct: 1128 LPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKL 1187
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVD-SSW*WRRILDHRSTATKFVFHLIGD 534
IW ++S + ++WV + +I+ SW W+++L +R A + +
Sbjct: 1188 IWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRN 1247
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLN-PNLKNDLDSI 357
G + D+W G +L I D E + + L + + N +++
Sbjct: 1248 GSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAE 1307
Query: 356 IEDVKNVKTENLIDDRVVCTVGKSGD--FVLRDTYNSLRHKETKNKWHKLVWFSSCVPRQ 183
I+ ++ + E D + ++ + F+ + T+N++R + + W+K VWF P+
Sbjct: 1308 IQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKY 1367
Query: 182 CFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
F++W+ VQ +L T ++ W LCN E H+FF C+Y+
Sbjct: 1368 SFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYT 1416
Score = 51.2 bits (121), Expect(2) = 1e-31
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = -2
Query: 1087 FEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLIKAVLNSM 908
F G LP+RYL L L++ ++ D PLI+ +KT+I SW R L +A R+ L+ +V+ S+
Sbjct: 1059 FANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSI 1118
Query: 907 LIHVLCFLRRPS 872
+ R P+
Sbjct: 1119 ANFWMSAYRLPA 1130
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 110 bits (275), Expect(2) = 4e-31
Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 9/298 (3%)
Frame = -1
Query: 902 SCSVLPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDV 723
S +LPK I + + +FLW+G K V + +C P GGLGLR + N +
Sbjct: 820 STFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTL 879
Query: 722 YLKHIWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFHL 543
++ IW + KD++W H + + ++ SW W+R+L R A +F+
Sbjct: 880 SMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCK 939
Query: 542 IGDGDNKKLSKDNWVGQGNILHIF----PRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLK 375
+G+G DNW G + I P ++ + AKV+S + W L +
Sbjct: 940 VGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLL----AKVASAFSEDGWRLPVSRS 995
Query: 374 NDLDSIIEDVKNVKTENLID---DRVVCTVG--KSGDFVLRDTYNSLRHKETKNKWHKLV 210
I + + V + DR +V F T+ ++R K T W +
Sbjct: 996 APAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSI 1055
Query: 209 WFSSCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
WF VP+ F +W+ +L TR ++ WG + +LC+ E H+ C +S
Sbjct: 1056 WFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFS 1113
Score = 52.8 bits (125), Expect(2) = 4e-31
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = -2
Query: 1090 GFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLIKAVL 917
GF +G+LP+RYL L LM+ +L + PL++K+ R SW ++ L FA R+ LI +V+
Sbjct: 754 GFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVI 811
>ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
[Cucumis sativus]
Length = 647
Score = 104 bits (259), Expect(2) = 8e-31
Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 3/288 (1%)
Frame = -1
Query: 902 SCSVLPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDV 723
S +LP K +++ I R +LW G + V ++C P GGL + ++ N
Sbjct: 279 SVFMLPMKVHKDVDKILRSYLWRGKEEGRGGAKVAWDEVCLPFDEGGLAICDGSSWNKAS 338
Query: 722 YLKHIWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFHL 543
LK +W ++ ++WV V ++K + L + SW +R IL R V
Sbjct: 339 TLKILWLLLVKSGSLWVAWVEAYILKGRSLWEIDAGAGRSWCFRAILRKRDILKAHVEMK 398
Query: 542 IGDGDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYL-VDGAWTLNPNLKNDL 366
+G+ ++ D W+ G I+ +F + YD + +A++ ++ DG W + + DL
Sbjct: 399 LGNVRKCRMLLDAWIQGGMIIQLFGERVIYDAGSRRDARLMDFMGGDGDWRWS-LVSLDL 457
Query: 365 DSIIEDVKNVKTENLIDDRVVCTVGKSGDFVLRDTYNSLRHKETKNKWHKLVWFSS--CV 192
I + ++ V+ +DDR V G+ F + + ++R ++ W L+W V
Sbjct: 458 MDIWDMIQGVRLSPSVDDRWVWVSGRLDSFSIVSAWETIRPNSSRVGWSGLLWGGGNITV 517
Query: 191 PRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFG 48
R F W+ ++ +L TR ++ +W + +LC E H+ G
Sbjct: 518 GRVYFCAWLAIRDRLGTRDRLSWWDRFIPLSCMLCGGNYESRDHLLIG 565
Score = 57.8 bits (138), Expect(2) = 8e-31
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = -2
Query: 1093 LGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLIKAVLN 914
+GF +G L +RYL L L+S RL DC PLI + +RI SW R L FA + L++ VL
Sbjct: 212 MGFSIGHLLIRYLGLPLLSRRLRSSDCDPLIQCITSRIRSWSARVLSFASSLQLVRLVLR 271
Query: 913 SMLIH 899
S+ ++
Sbjct: 272 SLQVY 276
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 86.7 bits (213), Expect(2) = 1e-30
Identities = 45/131 (34%), Positives = 64/131 (48%)
Frame = -1
Query: 893 VLPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLK 714
+LPKK + ++ R FLWAG V S+IC P GGLG++ + N + +
Sbjct: 652 ILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMIS 711
Query: 713 HIWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFHLIGD 534
HIWN++S+ W V L+K + P SW WR++L R F ++IGD
Sbjct: 712 HIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGD 771
Query: 533 GDNKKLSKDNW 501
G L DNW
Sbjct: 772 GRATSLWFDNW 782
Score = 75.1 bits (183), Expect(2) = 1e-30
Identities = 36/81 (44%), Positives = 60/81 (74%)
Frame = -2
Query: 1141 FLFFVDDITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDR 962
FL VD +S S+ QV F +G+ P+RYL + L++++L QDC PL+D+++TRI SW+++
Sbjct: 566 FLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENK 625
Query: 961 DLYFARRVLLIKAVLNSMLIH 899
L FA R+ LI++VL+S+ ++
Sbjct: 626 VLSFAGRLQLIQSVLSSIQVY 646
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 139 bits (351), Expect = 2e-30
Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 6/291 (2%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP I E++ + FLW+G +L K+ V + +C P + GGLGLR + N LK
Sbjct: 51 LPNACIKEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKL 110
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMK-TPVDSSW*WRRILDHRSTATKFVFHLIGD 534
IW ++S+ ++WV+ + + +I+ ++ T SW WR++L +R A+ F + I +
Sbjct: 111 IWRLLSSS-SLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRN 169
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLKNDLDSII 354
G DNW G ++ I D A V+ L + N +++ +
Sbjct: 170 GKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADHLNQMEAQL 229
Query: 353 EDVKNVKTENLID-DRVVCTVGKSG----DFVLRDTYNSLRHKETKNKWHKLVWFSSCVP 189
E+++ T+ L++ + VV GK G F ++T+ R ++ +N+W++ +WFS P
Sbjct: 230 EELR---TKGLVETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATP 286
Query: 188 RQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
+ FI W+ + +L T +++ W VN + C E H+FF CRYS
Sbjct: 287 KYSFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYS 337
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 134 bits (336), Expect = 1e-28
Identities = 86/294 (29%), Positives = 137/294 (46%), Gaps = 9/294 (3%)
Frame = -1
Query: 890 LPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDVYLKH 711
LP+ I E++ + +LW+G +L + + + +C P + GGLGLR + N LK
Sbjct: 80 LPRDCIREIDKMCSAYLWSGGELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDVCCLKL 139
Query: 710 IWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVD-SSW*WRRILDHRSTATKFVFHLIGD 534
IW IIS+ D++WVK + +L+K ++ SW WR+IL R A I +
Sbjct: 140 IWRIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINN 199
Query: 533 GDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAW---TLNPNLKNDLD 363
G D+W G ++ D + A V AW + N L+
Sbjct: 200 GARTSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATVVE-----AWGNRRRRRHRTNFLN 254
Query: 362 SIIED-VKNVKTENLIDDRVVCTVGKSGD----FVLRDTYNSLRHKETKNKWHKLVWFSS 198
+ E + + + N +DR + GK F +DT+N +R K W+K VWF+
Sbjct: 255 RVEERLILSWNSRNQAEDRALWK-GKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQ 313
Query: 197 CVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
+P+ F +W+ V +L T ++ W M V+ ILCN LE H+FF C ++
Sbjct: 314 AIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFA 367
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 101 bits (252), Expect(2) = 2e-28
Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 4/293 (1%)
Frame = -1
Query: 902 SCSVLPKKAINELNFIFRKFLWAGIDLTYKQPSVKCSKICHPIKYGGLGLRFIATTNVDV 723
S +LPK I ++ + KFLWAG K V C P GGLG R N +
Sbjct: 680 STFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTL 739
Query: 722 YLKHIWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFHL 543
L+ IW + ++W + + + + + W W+ +L+ R A KF+
Sbjct: 740 LLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAK 799
Query: 542 IGDGDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKVSSYLVDGAWTLNPNLKNDLD 363
+G+G D W G ++ AKV+ + W L + D
Sbjct: 800 VGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTAD 859
Query: 362 SIIEDVKNVKTEN--LIDDRVVCTVG--KSGDFVLRDTYNSLRHKETKNKWHKLVWFSSC 195
SI+ + ++ + ++ D V F T+ LR + +W K VWF
Sbjct: 860 SILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKGA 919
Query: 194 VPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGCRYS 36
VP+ F W +L TR +++ WG+ + LC+ E H+ C +S
Sbjct: 920 VPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFS 972
Score = 52.4 bits (124), Expect(2) = 2e-28
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = -2
Query: 1123 DITSYSIKQVLGFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFAR 944
D++ GF G+ P+RYL L LM +L D PL++KL R+ SW + L FA
Sbjct: 603 DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAG 662
Query: 943 RVLLIKAVLNSML 905
R LI +V+ ++
Sbjct: 663 RTQLISSVIFGLI 675
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 105 bits (263), Expect(2) = 4e-28
Identities = 76/294 (25%), Positives = 125/294 (42%), Gaps = 8/294 (2%)
Frame = -1
Query: 902 SCSVLPKKAINELNFIFRKFLWAGIDLTYKQP-SVKCSKICHPIKYGGLGLRFIATTNVD 726
S +LPK + + + +FLW G D+T + V C P GGLGLR T N
Sbjct: 819 SSFILPKCCLKTIEQMCNRFLW-GNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKT 877
Query: 725 VYLKHIWNIISNKDTIWVKCVHENLIKNQDLRHMKTPVDSSW*WRRILDHRSTATKFVFH 546
+ L+ IW + + +D++WV H N +++ + + + SW W+ IL R A +F+
Sbjct: 878 LNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRG 937
Query: 545 LIGDGDNKKLSKDNWVGQGNILHIFPRHMKYD*MNHSEAKV------SSYLVDGAWTLNP 384
+G+G D+W G ++ H A V + +++ A T N
Sbjct: 938 AVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNA 997
Query: 383 NLKNDLDSIIEDVKNVKTENLIDDRVVCTVGKSG-DFVLRDTYNSLRHKETKNKWHKLVW 207
+L N L S + + + D G S F + T+ LR ++T W VW
Sbjct: 998 SLAN-LRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVW 1056
Query: 206 FSSCVPRQCFIVWMCVQRKLKTRFKVLFWGMNVNPVFILCNTMLEDDFHMFFGC 45
+ C+P+ F W+ +L R + W N + +C E H+F C
Sbjct: 1057 YKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHC 1110
Score = 47.0 bits (110), Expect(2) = 4e-28
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = -2
Query: 1090 GFEVGSLPMRYLDLSLMSTRLFHQDCMPLIDKLKTRILSWKDRDLYFARRVLLIKAVLNS 911
GF G+ P RYL L L+ +L D LIDK+ R W + L FA R+ LI +V+ S
Sbjct: 753 GFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYS 812