BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00046080
         (1984 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   384   e-143
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   374   e-137
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   375   e-137
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   371   e-136
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     365   e-136
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           375   e-136
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   382   e-135
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     371   e-135
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     370   e-134
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   351   e-129
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   370   e-127
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   374   e-127
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   340   e-127
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   351   e-127
gb|AFB73912.1| polyprotein [Citrus sinensis]                          353   e-125
gb|AFB73911.1| polyprotein [Citrus sinensis]                          352   e-125
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             338   e-124
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   370   e-124
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              348   e-124
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              347   e-123

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  384 bits (985), Expect(4) = e-143
 Identities = 192/334 (57%), Positives = 245/334 (73%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QP+GF+V GKE+ VC LK+SLYGLKQSPRQWYKRFD +M    Y
Sbjct: 905  KTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGY 964

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
            T S+YD CVY+ +L D+SFIYL+LYVDDMLIA+K + +IQ+ K  LS+EFEMKDLG ARK
Sbjct: 965  TRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARK 1024

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI RDR    + LSQ+SY++K+  RFG+   +KP+  P A +  L    +P++ EE
Sbjct: 1025 ILGMEIIRDRERRKLFLSQRSYIQKVLARFGM-SSSKPIDTPSAANIHLTAMFAPQSEEE 1083

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
            +  M+ +PY SA GSLMYAMVCTRPD++ AVSVVSR+M  PG     AVK I RY+ GT 
Sbjct: 1084 KEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTS 1143

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
            DVGL +  +  T C V GY +SDYA D+D  RS+TGYVFT     +SW++TLQPTV LST
Sbjct: 1144 DVGLIYGGD--TQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLST 1201

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEYMA+ E  +E +W+KGL  +LG+  ++ +V
Sbjct: 1202 TEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATV 1235



 Score = 88.2 bits (217), Expect(4) = e-143
 Identities = 43/64 (67%), Positives = 52/64 (81%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG   A  V+YKAR+VA+G+ QR+G+DYNE+FSPVV HTSIR+LLA+VA   LEL  LD
Sbjct: 844  KEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLD 903

Query: 1225 VKTA 1214
            VKTA
Sbjct: 904  VKTA 907



 Score = 79.0 bits (193), Expect(4) = e-143
 Identities = 40/67 (59%), Positives = 52/67 (77%)
 Frame = -1

Query: 223  SNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFRH 44
            S I LAK+QV+H RTKHI+VRYH +R    E  I+++KVGTA+NPADM TK V   KF+H
Sbjct: 1241 SAICLAKDQVHHERTKHIDVRYHFLRS---EKRIKVKKVGTADNPADMFTKPVPQSKFQH 1297

Query: 43   CLNLISI 23
            CL+L++I
Sbjct: 1298 CLDLLNI 1304



 Score = 30.0 bits (66), Expect(4) = e-143
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 1509 AAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            AA+ D +ES         +  P G K I CKWV+ KK+
Sbjct: 808  AAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKE 845



 Score =  140 bits (354), Expect = 2e-30
 Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 5/155 (3%)
 Frame = -2

Query: 1902 DSALVAD-----TTEWIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKI 1738
            D ALVAD     +  W++D  ASYH+CPR++WF  +E+ DG  + M N++ CKV G G I
Sbjct: 264  DIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSI 323

Query: 1737 RLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKH 1558
            +++ +DG    L +VR+VP M KNLIS+  LDS+GF  + K GVL+V     +++KG+  
Sbjct: 324  KIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMR 383

Query: 1557 GNLYFLQGNTSVSEGIAAVSDSVESDTTKLCHMRL 1453
            G LYFLQG+T       A S+  + D TKL H+RL
Sbjct: 384  GTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRL 418


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  374 bits (960), Expect(4) = e-137
 Identities = 194/325 (59%), Positives = 240/325 (73%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF V GKE  VC LKRSLYGLKQSPRQW KRFD FM +  +
Sbjct: 931  KTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSF 990

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              S YDSCVY K + + S IYLLLYVDDMLIA+KS++EI + K  LSSEF+MKDLG A+K
Sbjct: 991  KRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI RDR+S  + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+  Q P    E
Sbjct: 1050 ILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSIDAE 1108

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG     AV+WI RY+ GT 
Sbjct: 1109 IEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTT 1168

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               LKF R ++    ++GY +SDYA DLD+ RS+TGYVFT  S  +SWR+TLQ  VALST
Sbjct: 1169 YSCLKFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALST 1225

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             EAEYMA+ E  +E +W+KGL+ EL
Sbjct: 1226 TEAEYMAICEACKELIWLKGLYAEL 1250



 Score = 79.7 bits (195), Expect(4) = e-137
 Identities = 40/64 (62%), Positives = 49/64 (76%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG  S+   +YKARLVA+GY+Q  G+DYN+VFSPVV H+SIR  L++VA   LEL  LD
Sbjct: 870  KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 929

Query: 1225 VKTA 1214
            VKTA
Sbjct: 930  VKTA 933



 Score = 78.2 bits (191), Expect(4) = e-137
 Identities = 32/69 (46%), Positives = 53/69 (76%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I+L K+Q++H RTKHI+++YH VR ++EEG++++ K+ T +NPADM+TK +   KF 
Sbjct: 1264 QSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFE 1323

Query: 46   HCLNLISIV 20
             C +L+ ++
Sbjct: 1324 LCSSLVGLI 1332



 Score = 29.6 bits (65), Expect(4) = e-137
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I+A+ + ++S         + LPK +K I CKW++ +K+
Sbjct: 833  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 871



 Score =  118 bits (296), Expect = 9e-24
 Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
 Frame = -2

Query: 1977 DANVAEIKFGAIEDDEYDKFSMTVHDSALVADTTEWIMDCAASYHMCPRKDWFVKFEKFD 1798
            D  V+     A +DD  D     V  +  VA   EWI+D A S+H+C +++WF  ++   
Sbjct: 258  DGKVSVASAAASDDDSGD---CLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQ 314

Query: 1797 -GPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMT 1621
             G  V MG++N C + GIG +++K +DG+ + L++VRY+P M +NLIS+  LD+ G++ +
Sbjct: 315  KGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYS 374

Query: 1620 LKGGVLKV*SNELVVMKG-LKHGNLYFLQGNT-SVSEGIAAVSDSVESDTTKLCHMRL 1453
               GVLKV    LV +KG L    LY L+G T + S+  AA   + E   T L HMRL
Sbjct: 375  GSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRL 432


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  375 bits (964), Expect(4) = e-137
 Identities = 195/325 (60%), Positives = 246/325 (75%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM+QP+GF V GKE+ VC LK+SLYGLKQSPRQWYKRFD FM +QK+
Sbjct: 1137 KTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 1196

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              SNYDSCVY  K+ D S IYLLLYVDDMLIA+K + EI + K QLSSEFEMKDLG A+K
Sbjct: 1197 RRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 1255

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI R R S  + LSQK Y++K+ +RF + D AKPV+ PLA HF+L+ +  P++  +
Sbjct: 1256 ILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHD-AKPVSTPLAAHFRLSSDLCPQSDYD 1314

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY+SA GSLMYAMVC+RPD+S A+SVVSRYM NPG     AV+WI RY+ GT 
Sbjct: 1315 IEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTS 1374

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               L+F R+ R G  +VGY +SD+A DLD+ RS+ GYVFT     +SW+++LQ TVALST
Sbjct: 1375 SACLQFGRS-RDG--LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALST 1431

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             EAEYMA+ E  +EA+W++GL+  L
Sbjct: 1432 TEAEYMAISEACKEAIWLRGLYTVL 1456



 Score = 80.9 bits (198), Expect(4) = e-137
 Identities = 40/64 (62%), Positives = 49/64 (76%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG  S+   RYKARL+AKGY+Q  GID+N+VFSPVV H+SIR LL++VA    EL  +D
Sbjct: 1076 KEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMD 1135

Query: 1225 VKTA 1214
            VKTA
Sbjct: 1136 VKTA 1139



 Score = 72.8 bits (177), Expect(4) = e-137
 Identities = 32/66 (48%), Positives = 48/66 (72%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I L K+Q++H RTKHI+VRYH +R ++ EG++++ K+   +NPADM+TK V   KF 
Sbjct: 1470 QSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFE 1529

Query: 46   HCLNLI 29
             C +L+
Sbjct: 1530 LCSSLV 1535



 Score = 31.6 bits (70), Expect(4) = e-137
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I A+ D +ES         ++LPK +K I CKW++ +K+
Sbjct: 1039 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKE 1077



 Score =  133 bits (335), Expect = 3e-28
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
 Frame = -2

Query: 1947 AIEDDEYDKFSMTVHDSALVADTTEWIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNN 1768
            A+  DE     + V  +     + +WI++ A  YHMCP +DWF  +E      V MG++ 
Sbjct: 482  AVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDT 541

Query: 1767 TCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SN 1588
             C+V GIG +++KM DG ++ L DVR++P +K++LIS+  LD +G++ +   G+LKV   
Sbjct: 542  PCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 601

Query: 1587 ELVVMKG-LKHGNLYFLQGNTSVSEGIAAVSDSV-ESDTTKLCHMRL 1453
             LVVMK  +K  NLY L+G T++   +AAVSDS+  SD T L HMRL
Sbjct: 602  SLVVMKADIKSANLYHLRG-TTILGNVAAVSDSLSNSDATNLWHMRL 647


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  371 bits (953), Expect(4) = e-136
 Identities = 193/325 (59%), Positives = 239/325 (73%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF V GKE  VC LKRSLYGLKQSPRQW KRFD FM +  +
Sbjct: 931  KTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSF 990

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              S YDSCVY K + + S IYLLLYVDDMLIA+KS++EI + K  LSSEF+MKDLG A+K
Sbjct: 991  KRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            IL MEI RDR+S  + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+  Q P T  E
Sbjct: 1050 ILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSTDAE 1108

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG      V+WI RY+ GT 
Sbjct: 1109 IEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTT 1168

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               LKF R ++    ++GY +SDYA DLD+ RS+TGYVFT  S  +SWR+TLQ  VALST
Sbjct: 1169 YSCLKFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALST 1225

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             EAEYMA+ E  +E +W+KGL+ EL
Sbjct: 1226 TEAEYMAICEACKELIWLKGLYAEL 1250



 Score = 79.7 bits (195), Expect(4) = e-136
 Identities = 40/64 (62%), Positives = 49/64 (76%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG  S+   +YKARLVA+GY+Q  G+DYN+VFSPVV H+SIR  L++VA   LEL  LD
Sbjct: 870  KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 929

Query: 1225 VKTA 1214
            VKTA
Sbjct: 930  VKTA 933



 Score = 78.2 bits (191), Expect(4) = e-136
 Identities = 32/69 (46%), Positives = 53/69 (76%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I+L K+Q++H RTKHI+++YH VR ++EEG++++ K+ T +NPADM+TK +   KF 
Sbjct: 1264 QSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFE 1323

Query: 46   HCLNLISIV 20
             C +L+ ++
Sbjct: 1324 LCSSLVGLI 1332



 Score = 29.6 bits (65), Expect(4) = e-136
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I+A+ + ++S         + LPK +K I CKW++ +K+
Sbjct: 833  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 871



 Score =  118 bits (296), Expect = 9e-24
 Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
 Frame = -2

Query: 1977 DANVAEIKFGAIEDDEYDKFSMTVHDSALVADTTEWIMDCAASYHMCPRKDWFVKFEKFD 1798
            D  V+     A +DD  D     V  +  VA   EWI+D A S+H+C +++WF  ++   
Sbjct: 258  DGKVSVASAAASDDDSGD---CLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQ 314

Query: 1797 -GPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMT 1621
             G  V MG++N C + GIG +++K +DG+ + L++VRY+P M +NLIS+  LD+ G++ +
Sbjct: 315  KGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYS 374

Query: 1620 LKGGVLKV*SNELVVMKG-LKHGNLYFLQGNT-SVSEGIAAVSDSVESDTTKLCHMRL 1453
               GVLKV    LV +KG L    LY L+G T + S+  AA   + E   T L HMRL
Sbjct: 375  GSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRL 432


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  365 bits (938), Expect(4) = e-136
 Identities = 183/334 (54%), Positives = 235/334 (70%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHGDLEE IYM QPEGF   GKE+ VC LK+SLYGLKQSPRQWYK FD +M    Y
Sbjct: 896  KTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGY 955

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
            T   YD CVY+   +D   I LLLYVDDMLIA +  ++IQ+ K +L +EF+MKDLG A+K
Sbjct: 956  TRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQK 1015

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILG+EI RDR +  I LSQ+ Y+ K+ +RF + + AK V+ PLA HF+L+ EQ P   +E
Sbjct: 1016 ILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAE-AKVVSIPLAAHFRLSAEQRPSDQKE 1074

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGTL---AVKWILRYI*GTV 513
              +M  +PY SA G LMYAM+CTRPD++QA+SVVS+YM NPG     AVKWI +Y+  T 
Sbjct: 1075 IDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTR 1134

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
             +G+ F R +   C V G+ +SD+A DLD+ RS  GYVFT   GP+SW++TLQ   ALST
Sbjct: 1135 QLGIMFERRQGEAC-VAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALST 1193

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEYMA+ E  +EA+W+ GL  +LG+ QE + V
Sbjct: 1194 TEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVV 1227



 Score = 84.0 bits (206), Expect(4) = e-136
 Identities = 38/64 (59%), Positives = 52/64 (81%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG      + YKARLVAKGY+Q++G+DY+E+FSPVV HTSIR+LL++ AQ+ +E+  +D
Sbjct: 835  KEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMD 894

Query: 1225 VKTA 1214
            VKTA
Sbjct: 895  VKTA 898



 Score = 77.0 bits (188), Expect(4) = e-136
 Identities = 38/59 (64%), Positives = 46/59 (77%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKF 50
            QS IHLAKNQV+HARTKHI+ RYH++R  VE G I +EKV T +N AD LTK V+ EK+
Sbjct: 1232 QSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEKY 1290



 Score = 31.6 bits (70), Expect(4) = e-136
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I A+++ +ES         +  PK  K +GCKWV+ KK+
Sbjct: 798  IGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKE 836



 Score =  100 bits (249), Expect = 2e-18
 Identities = 54/141 (38%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            W +D A ++H C  +DWF  +++ +   V MGN++  ++ GIG ++++M+DG+V+ L +V
Sbjct: 263  WTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNV 322

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKG-LKHGNLYFLQGNTSVSE 1516
            R+ P + +NLIS+  +D  GF    + GVLKV   ++V MKG ++  N+Y L G+T   E
Sbjct: 323  RHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGST--VE 380

Query: 1515 GIAAVSDSVESDTTKLCHMRL 1453
            G A V    E D T+L   RL
Sbjct: 381  GGAGV--CTEEDKTELWRRRL 399


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  375 bits (963), Expect(4) = e-136
 Identities = 194/325 (59%), Positives = 241/325 (74%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF V GKE  VC LKRSLYGLKQSPRQW KRFD FM +  +
Sbjct: 933  KTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSF 992

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              S YDSCVY K + + S IYLLLYVDDMLIA+KS++EI + K  LSSEF+MKDLG A+K
Sbjct: 993  KRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1051

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI RDR+S  + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+  Q P T  E
Sbjct: 1052 ILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSTDAE 1110

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG     A++WI RY+ GT 
Sbjct: 1111 IEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTT 1170

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               LKF R ++    ++GY +SDYA DLD+ RS+TGYVFT  S  +SWR+TLQ  VALST
Sbjct: 1171 YSCLKFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALST 1227

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             EAEYMA+ E  +E +W+KGL+ EL
Sbjct: 1228 TEAEYMAICEACKELIWLKGLYAEL 1252



 Score = 77.0 bits (188), Expect(4) = e-136
 Identities = 32/69 (46%), Positives = 53/69 (76%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I+L K+Q++H RTKHI+++YH VR ++EEG++++ K+ T +NPADM+TK +   KF 
Sbjct: 1266 QSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFE 1325

Query: 46   HCLNLISIV 20
             C +L+ ++
Sbjct: 1326 LCSSLVGLI 1334



 Score = 75.1 bits (183), Expect(4) = e-136
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KE    +   +YKARLVA+GY+Q  G+DYN+VFSPVV H+SIR  L++VA   LEL  LD
Sbjct: 872  KEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 931

Query: 1225 VKTA 1214
            VKTA
Sbjct: 932  VKTA 935



 Score = 29.6 bits (65), Expect(4) = e-136
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I+A+ + ++S         + LPK +K I CKW++ +K+
Sbjct: 835  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 873



 Score =  117 bits (292), Expect = 3e-23
 Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
 Frame = -2

Query: 1947 AIEDDEYDKFSMTVHDSALVADTTEWIMDCAASYHMCPRKDWFVKFEKFD-GPRVFMGNN 1771
            A+ DD  D     V  +  VA   EWI+D A S+H+C +++WF  ++    G  V MG++
Sbjct: 269  AVSDD--DSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDD 326

Query: 1770 NTCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*S 1591
            N C + GIG +++K +DG+ + L++VRY+P M +NLIS+  LD+ G++ +   GVLKV  
Sbjct: 327  NPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSK 386

Query: 1590 NELVVMKG-LKHGNLYFLQGNT-SVSEGIAAVSDSVESDTTKLCHMRL 1453
              LV +KG L    LY L+G T   S+  AA   + E   T L HMRL
Sbjct: 387  GSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRL 434


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  382 bits (982), Expect(4) = e-135
 Identities = 200/322 (62%), Positives = 242/322 (75%), Gaps = 3/322 (0%)
 Frame = -3

Query: 1214 FLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKYTSS 1035
            FLHG+LEE IYM QPEGF V GKED VC LKRSLYGLKQSPRQWYKRFD FM +  +  S
Sbjct: 923  FLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRS 982

Query: 1034 NYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARKILG 855
             +DSCVY  K  + S IYLLLYVDDMLIA+KS+ +I   K QLSSEF+MKDLG A+KILG
Sbjct: 983  EFDSCVYI-KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILG 1041

Query: 854  MEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEEQRL 675
            MEI RDR S  + LSQ+SY+KK+ +RF + D AKPV+ P+A HFKL+  Q   T E+   
Sbjct: 1042 MEITRDRNSGLLFLSQQSYIKKVLQRFNMHD-AKPVSTPIAPHFKLSALQCASTDEDVEY 1100

Query: 674  MAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTVDVG 504
            M+ +PY+SA GSLMYAMVC+ PD+S A+S+VSRYM NPG     AV+WI RY+ GT D  
Sbjct: 1101 MSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADAC 1160

Query: 503  LKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPEA 324
            LKF R ++    +VGY +SD+A DLDK RS+TGYVFT  S  +SW++TLQP VA ST EA
Sbjct: 1161 LKFGRIDK---GLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEA 1217

Query: 323  EYMAVVEGIREAVWMKGLFEEL 258
            EYMA+ E  +E+VW+KGLF EL
Sbjct: 1218 EYMAIAEACKESVWLKGLFAEL 1239



 Score = 72.8 bits (177), Expect(4) = e-135
 Identities = 33/69 (47%), Positives = 50/69 (72%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I L K+Q++H RTKHI+++YH VR IV +G++++ K+   +NPADM+TK +   KF 
Sbjct: 1253 QSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFE 1312

Query: 46   HCLNLISIV 20
             C +L+ IV
Sbjct: 1313 LCSSLVGIV 1321



 Score = 70.9 bits (172), Expect(4) = e-135
 Identities = 35/63 (55%), Positives = 44/63 (69%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG   +   R+K RLVAKG++Q  G+DYN+VFSPVV H+SIR   ++V    LEL  LD
Sbjct: 859  KEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLD 918

Query: 1225 VKT 1217
            VKT
Sbjct: 919  VKT 921



 Score = 29.3 bits (64), Expect(4) = e-135
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I+A+ + ++S         + LPK +K + CKW++ +K+
Sbjct: 822  ISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKE 860



 Score =  114 bits (284), Expect = 2e-22
 Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 2/148 (1%)
 Frame = -2

Query: 1890 VADTTEWIMDCAASYHMCPRKDWFVKFEKFDGPRVF-MGNNNTCKVEGIGKIRLKMNDGV 1714
            VA   EWI+D A S+H+C  +DWF  ++      V  MG++N  ++ GIG +++K +DG+
Sbjct: 286  VASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGM 345

Query: 1713 VQELEDVRYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKG-LKHGNLYFLQ 1537
             + L+DVR++P M +NLIS+  LD+ G++ +  GGV+KV    LV M G +   NLY L+
Sbjct: 346  TRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLR 405

Query: 1536 GNTSVSEGIAAVSDSVESDTTKLCHMRL 1453
            G+T      AA     E   T L HMRL
Sbjct: 406  GSTLHGSVTAAAVTKDEPSKTNLWHMRL 433


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  371 bits (952), Expect(4) = e-135
 Identities = 192/325 (59%), Positives = 242/325 (74%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM+QPEGF V GKE+ VC LK+SLYGLKQSPRQWYKRFD FM +QK+
Sbjct: 839  KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 898

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              SNYDSCVY  K+ D S IYLLLYVDDMLIA+K + EI + K QLSSEFEMKDLG A+K
Sbjct: 899  RRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 957

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI R+R S  + LSQK Y++K+  RF + D AK V+  LA HF+L+ +  P++  +
Sbjct: 958  ILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHD-AKLVSTLLAAHFRLSSDLCPQSAYD 1016

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY+SA  SLMYAMVC+RPD+S A+SVVSRYM NPG     AV+WI RY+ GT 
Sbjct: 1017 IEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTS 1076

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               L+F R+      +VGY +SD+A DLD+ RS+TGYVFT     +SW+++LQ TVALST
Sbjct: 1077 SACLQFGRSSD---GLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALST 1133

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             EAEYMA+ E  +E +W++GL+ EL
Sbjct: 1134 TEAEYMAISEACKEVIWLRGLYTEL 1158



 Score = 79.7 bits (195), Expect(4) = e-135
 Identities = 40/64 (62%), Positives = 48/64 (75%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG   +   RYKARLVAKGY+Q  GID+N+VFSPVV H+SIR LL++VA    EL  +D
Sbjct: 778  KEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMD 837

Query: 1225 VKTA 1214
            VKTA
Sbjct: 838  VKTA 841



 Score = 73.6 bits (179), Expect(4) = e-135
 Identities = 31/68 (45%), Positives = 49/68 (72%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I L K+Q++H RTKHI++RYH +R ++ EG++++ K+ T +NP DM+TK V   KF 
Sbjct: 1172 QSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFE 1231

Query: 46   HCLNLISI 23
             C +L+ +
Sbjct: 1232 LCSSLVGV 1239



 Score = 30.0 bits (66), Expect(4) = e-135
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I A+ D +ES          +LPK +K I CKW++ +K+
Sbjct: 741  ITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKE 779



 Score =  140 bits (352), Expect = 3e-30
 Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
 Frame = -2

Query: 1947 AIEDDEYDKFSMTVHDSALVADTTEWIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNN 1768
            A+  DE     + V  +     + +WI+D A +YHMCP +DWF  +E   G  V MG++ 
Sbjct: 184  AVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDT 243

Query: 1767 TCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SN 1588
             C+V GIG +++KM DG ++ L DVR++P +K++LIS+  LD +G++ +   G+LKV   
Sbjct: 244  PCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 303

Query: 1587 ELVVMKG-LKHGNLYFLQGNTSVSEGIAAVSDSV-ESDTTKLCHMRL 1453
             LVVMK  +K+ NLY L+G T++   +AAVSDS+  SD T L HMRL
Sbjct: 304  SLVVMKADIKYANLYHLRG-TTILGNVAAVSDSLSNSDATNLWHMRL 349


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  370 bits (949), Expect(4) = e-134
 Identities = 192/325 (59%), Positives = 244/325 (75%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM+QPEGF V GKE+ V  LK+SLYGLKQSPRQWYKRFD FM +QK+
Sbjct: 809  KTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKF 868

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              SNYDSCVY  K+ D S IYLLLYVDDMLIA+K + EI++ K QLSSEFEMKDLG A+K
Sbjct: 869  RRSNYDSCVYL-KVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKK 927

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI R+R S  + LSQK Y++K+ +RF + D AKPV+ PLA HF+L+ +  P++  +
Sbjct: 928  ILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHD-AKPVSTPLAAHFRLSSDLCPQSDYD 986

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY S  GSLMYAMVC+R D+S A+SVVSRYM NPG      V+WI +Y+ GT 
Sbjct: 987  IEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYLRGTS 1046

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               L+F R+ R G  +VGY +SD+A DLD+ RS+TGYVFT     +SW+++LQ TVALST
Sbjct: 1047 SACLQFGRS-RDG--LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALST 1103

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             E EYMA+ E  +EA+W++GL+ EL
Sbjct: 1104 TEVEYMAISEACKEAIWLRGLYTEL 1128



 Score = 76.3 bits (186), Expect(4) = e-134
 Identities = 38/64 (59%), Positives = 48/64 (75%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            K+G   +   RYKARLVAKGY+Q  GID+N+VFSPV+ H+SIR LL++VA    EL  +D
Sbjct: 748  KKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMD 807

Query: 1225 VKTA 1214
            VKTA
Sbjct: 808  VKTA 811



 Score = 73.9 bits (180), Expect(4) = e-134
 Identities = 32/68 (47%), Positives = 49/68 (72%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I   K+Q++H RTKHI+VRYH +R ++ EG++++ K+ T +NPADM+TK V   KF 
Sbjct: 1142 QSAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFE 1201

Query: 46   HCLNLISI 23
             C +L+ +
Sbjct: 1202 LCSSLVGV 1209



 Score = 31.2 bits (69), Expect(4) = e-134
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 1524 VSEG----IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKK 1399
            VS+G    I A+ D +ES         ++LPK +K I CKW++ +K
Sbjct: 703  VSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 748



 Score =  128 bits (322), Expect = 8e-27
 Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
 Frame = -2

Query: 1947 AIEDDEYDKFSMTVHDSALVADTTEWIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNN 1768
            A+  DE     + V  +     + +WI+D A +YHMC  +DWF  +E   G  V MG++ 
Sbjct: 275  AVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDT 334

Query: 1767 TCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SN 1588
             C+V G+  +++KM DG ++ L DVR++P +K++LIS+  LD + ++ +   G+LKV   
Sbjct: 335  PCEVAGVETVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKG 394

Query: 1587 ELVVMKG-LKHGNLYFLQGNTSVSEGIAAVSDSV-ESDTTKLCHMRL 1453
             LVVMK  +K  NLY ++G T++   IAAVSDS+  SD T L HMRL
Sbjct: 395  SLVVMKADIKSANLYHVRG-TTILGNIAAVSDSLYNSDATNLWHMRL 440


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  351 bits (900), Expect(4) = e-129
 Identities = 181/334 (54%), Positives = 236/334 (70%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHGDLEE IYM+QPEGFEVAGK+  VC L +SLYGLKQ+PRQWY +FD FMK+Q Y
Sbjct: 924  KTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTY 983

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              +  D CVYFK+  + +FI LLLYVDDMLI  K +  I + K  LS  F+MKDLG A++
Sbjct: 984  LKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQ 1043

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGM+I R+R S  + LSQ+ Y++++ +RF + + AKPV+ PLA H KL+ +  P TVEE
Sbjct: 1044 ILGMKIVRERTSRKLWLSQEKYIERVLERFNMKN-AKPVSTPLAGHLKLSKKMCPTTVEE 1102

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
            +  MA++PY+SA GSLMYAMVCTRPDI+ AV VVSR++ NPG     AVKWILRY+ GT 
Sbjct: 1103 KGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTT 1162

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               L F  ++     + GY ++D A D+D  +S TGY+FT   G ISW+S LQ  VALST
Sbjct: 1163 GDCLCFGGSDPI---LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALST 1219

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEY+A  E  +E +W+K   +ELG+ Q++  V
Sbjct: 1220 TEAEYIAATETGKEMIWLKRFLQELGLHQKEYVV 1253



 Score = 79.0 bits (193), Expect(4) = e-129
 Identities = 36/68 (52%), Positives = 50/68 (73%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I L+KN +YHARTKHI+VRYH +R++V++  +++ K+ T  NPADMLTKVV   KF 
Sbjct: 1258 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

Query: 46   HCLNLISI 23
             C  L+ +
Sbjct: 1318 LCKELVGM 1325



 Score = 73.2 bits (178), Expect(4) = e-129
 Identities = 36/55 (65%), Positives = 44/55 (80%)
 Frame = -1

Query: 1378 VRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLDVKTA 1214
            VRYKARLV KG+ Q+KGID++E+FSPVV  TSIR +L+L A   LE+  LDVKTA
Sbjct: 872  VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTA 926



 Score = 31.6 bits (70), Expect(4) = e-129
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 1506 AVSDSVESDTTKLCHMRLELPKGEKAIGCKWVY-TKKD 1396
            A+ + +ES      +  +ELPKG++ + CKWV+  KKD
Sbjct: 829  AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKD 866



 Score = 87.0 bits (214), Expect = 3e-14
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
 Frame = -2

Query: 1878 TEWIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELE 1699
            +EW++D AAS+H  P +D F ++   D   V MGN +  K+ GIG I +K N G    L+
Sbjct: 292  SEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLK 351

Query: 1698 DVRYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKHGNLYFLQGNTSVS 1519
            DVR+VP+++ NLIS   LD  G+E        ++    LV+ KG+  G LY  + N  + 
Sbjct: 352  DVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLY--RTNAEIC 409

Query: 1518 EG-IAAVSDSVESDTTKLCHMRL 1453
            +G + A  D +  D   L H R+
Sbjct: 410  QGELNAAQDEISVD---LWHKRM 429


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  370 bits (950), Expect(4) = e-127
 Identities = 190/331 (57%), Positives = 238/331 (71%), Gaps = 3/331 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYMKQPEGF  + K D VC LK+SLYGLKQSPRQWYKRFD FM + ++
Sbjct: 1229 KTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEF 1288

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              + YDSCVYFK L D SFIYLLLYVDDMLIA+K+  EI + K  LSSEFEMKDLG A+K
Sbjct: 1289 MRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKK 1348

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI RDR +  + +SQ+ Y++KL + F + D +KPV+ PLA+HFK +    P T EE
Sbjct: 1349 ILGMEIWRDRDAGLLYVSQQKYIEKLMQAFHM-DHSKPVSTPLAQHFKFDHSTLPSTDEE 1407

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGTL---AVKWILRYI*GTV 513
               M  +PY+S  GSLMYAMVCTRPD++ AVSVVSR+M NPG     AVKWI+RY+ G+ 
Sbjct: 1408 VEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSS 1467

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
             V L +  N      +VG+ +SD+  DL K RS+T Y+FT     ISWR++LQPTVALST
Sbjct: 1468 SVCLVYG-NGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALST 1526

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEK 240
             EAEYM++ EG++E +W+ G    LG+   K
Sbjct: 1527 TEAEYMSLTEGVKEGMWLNGFLGSLGLNLSK 1557



 Score = 77.8 bits (190), Expect(4) = e-127
 Identities = 38/65 (58%), Positives = 47/65 (72%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS + LAKN VYH RTKHI+VR + +R ++EE    +EKV T  NPADMLTK +T EKF+
Sbjct: 1565 QSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTKPITTEKFK 1624

Query: 46   HCLNL 32
            H L L
Sbjct: 1625 HSLGL 1629



 Score = 53.9 bits (128), Expect(4) = e-127
 Identities = 33/64 (51%), Positives = 39/64 (60%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            K+G       +YK+RLVAK            VFSPVV H SIR+LLA+V+ F LEL  LD
Sbjct: 1180 KDGISEDEPPKYKSRLVAK------------VFSPVVKHKSIRVLLAMVSVFNLELDQLD 1227

Query: 1225 VKTA 1214
            VKTA
Sbjct: 1228 VKTA 1231



 Score = 26.9 bits (58), Expect(4) = e-127
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 1449 LPKGEKAIGCKWVYTKKD 1396
            LP+G K + CKW++  KD
Sbjct: 1164 LPEGVKPVDCKWLFKIKD 1181



 Score =  101 bits (251), Expect = 1e-18
 Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            WI+D  ASYHM   +D F  F++++G  V +G++    V+G G +++KM DG+V+ L + 
Sbjct: 620  WILDTGASYHMAYSRDLFTTFKEWNGS-VKLGDDGELGVKGSGSVQIKMYDGLVRTL-NA 677

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKG-LKHGNLYFLQGNTSVSE 1516
             YVP ++KNLISVG LD  G+  +  GGVL+V    LVVMKG L+HG +Y L G++ +  
Sbjct: 678  WYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHG-IYTLMGSSVL-- 734

Query: 1515 GIAAVSDSVESDTTKLCHMRL 1453
            G AAV    E + T+L H RL
Sbjct: 735  GTAAVE---EDNCTELWHRRL 752


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  374 bits (960), Expect(4) = e-127
 Identities = 194/325 (59%), Positives = 240/325 (73%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF V GKE  VC LKRSLYGLKQSPRQW KRFD FM +  +
Sbjct: 931  KTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSF 990

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              S YDSCVY K + + S IYLLLYVDDMLIA+KS++EI + K  LSSEF+MKDLG A+K
Sbjct: 991  KRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI RDR+S  + LSQ +Y+KK+ +RF + + AK V+ P+A HFKL+  Q P    E
Sbjct: 1050 ILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQN-AKAVSTPIAPHFKLSAAQCPSIDAE 1108

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG     AV+WI RY+ GT 
Sbjct: 1109 IEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTT 1168

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
               LKF R ++    ++GY +SDYA DLD+ RS+TGYVFT  S  +SWR+TLQ  VALST
Sbjct: 1169 YSCLKFGRTDK---GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALST 1225

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             EAEYMA+ E  +E +W+KGL+ EL
Sbjct: 1226 TEAEYMAICEACKELIWLKGLYAEL 1250



 Score = 79.7 bits (195), Expect(4) = e-127
 Identities = 40/64 (62%), Positives = 49/64 (76%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG  S+   +YKARLVA+GY+Q  G+DYN+VFSPVV H+SIR  L++VA   LEL  LD
Sbjct: 870  KEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLD 929

Query: 1225 VKTA 1214
            VKTA
Sbjct: 930  VKTA 933



 Score = 45.4 bits (106), Expect(4) = e-127
 Identities = 17/34 (50%), Positives = 28/34 (82%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGE 125
            +S I+L K+Q++H RTKHI+++YH VR ++EE +
Sbjct: 1264 ESAIYLTKDQMFHERTKHIDIKYHFVRDVIEEDD 1297



 Score = 29.6 bits (65), Expect(4) = e-127
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 1512 IAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            I+A+ + ++S         + LPK +K I CKW++ +K+
Sbjct: 833  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKE 871



 Score =  117 bits (293), Expect = 2e-23
 Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
 Frame = -2

Query: 1977 DANVAEIKFGAIEDDEYDKFSMTVHDSALVADTTEWIMDCAASYHMCPRKDWFVKFEKFD 1798
            D  V+     A +DD  D     V  +  VA   EWI+D A S+H+C +++WF  ++   
Sbjct: 258  DGKVSVASAAASDDDSGD---CLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQ 314

Query: 1797 -GPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVGELDSRGFEMT 1621
             G  V MG++N C + GIG +++K +DG+ + L++VRY+P M +NLIS+  LD+ G++ +
Sbjct: 315  KGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYS 374

Query: 1620 LKGGVLKV*SNELVVMKG-LKHGNLYFLQGNT-SVSEGIAAVSDSVESDTTKLCHMRL 1453
               GVLKV    LV +KG +    LY L+G T + S+  AA   + E   T L HMRL
Sbjct: 375  GSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRL 432


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  340 bits (871), Expect(4) = e-127
 Identities = 170/335 (50%), Positives = 232/335 (69%), Gaps = 3/335 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+L+E I M QPEG+E     ++VC LK+SLYGLKQSPRQW +RFD FM    Y
Sbjct: 937  KTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGY 996

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              S Y+ CVY ++L D S+IYLLLYVDDMLIAS+++ +IQ+ K  L+ EFEMKDLG ARK
Sbjct: 997  QRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARK 1056

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI R+R    ++LSQ  Y+  + + FG+ D++K    PL  HFKL          +
Sbjct: 1057 ILGMEITRNREQGILDLSQSEYVAGVLRAFGM-DQSKVSQTPLGAHFKLRAANEKTLARD 1115

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M  +PY +A GS+MY+M+ +RPD++  V VVSR+M  P      AVKW++RY+ GT 
Sbjct: 1116 AEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQ 1175

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
            D  L+F ++++   ++ GYC+SDYA DLD+ RSITG+VFTA    ISW+S LQ  VALST
Sbjct: 1176 DTCLRFKKDDK--FEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALST 1233

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSVL 228
             EAEYMA+ E ++EA+W++GL  E+G +Q+ + V+
Sbjct: 1234 TEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVM 1268



 Score = 85.5 bits (210), Expect(4) = e-127
 Identities = 42/64 (65%), Positives = 49/64 (76%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            K G P     RYKARLVAKG++QR+GIDY E+FSPVV H SIR LL++V QF +EL  LD
Sbjct: 876  KAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLD 935

Query: 1225 VKTA 1214
            VKTA
Sbjct: 936  VKTA 939



 Score = 72.8 bits (177), Expect(4) = e-127
 Identities = 34/68 (50%), Positives = 47/68 (69%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I L+KN V+H RTKHI+VRYH +R+ + +GEIQ+ K+ T  NPAD+ TK V   K +
Sbjct: 1272 QSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQ 1331

Query: 46   HCLNLISI 23
              L L+ +
Sbjct: 1332 EALKLLRV 1339



 Score = 30.0 bits (66), Expect(4) = e-127
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -2

Query: 1455 LELPKGEKAIGCKWVYTKK 1399
            ++ P+G++ IGCKW++ +K
Sbjct: 858  IDKPEGKRVIGCKWIFKRK 876



 Score =  121 bits (303), Expect = 1e-24
 Identities = 65/140 (46%), Positives = 84/140 (60%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            WI+D   S+HM  RKDW + F++    +V MGN+   +V+GIG +R+K  DG    L DV
Sbjct: 312  WILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTDV 371

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKHGNLYFLQGNTSVSEG 1513
            RY+PEM KNLIS+G L+ +G     K G+L +  N+L V+ G K   LYFLQG T   E 
Sbjct: 372  RYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFLQGTTLAGE- 430

Query: 1512 IAAVSDSVESDTTKLCHMRL 1453
             A V D  E D T L H RL
Sbjct: 431  -ANVIDK-EKDETSLWHSRL 448


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  351 bits (901), Expect(4) = e-127
 Identities = 172/332 (51%), Positives = 241/332 (72%), Gaps = 4/332 (1%)
 Frame = -3

Query: 1214 FLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKYTSS 1035
            FLHGDLEE +YM+QPEGF     E++VC LK+SLYGLKQSPRQW KRFD+FM +Q++  S
Sbjct: 956  FLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRS 1015

Query: 1034 NYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARKILG 855
             +D+CVY K + +  FIYLLLYVDDMLIA  S+ EI R K QLS+EFEMKD+G A +ILG
Sbjct: 1016 EHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILG 1075

Query: 854  MEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKL-NVEQSPKTVEEQR 678
            ++I RDR+   + LSQ+ Y++K+  RF +   AK    P+  HFKL  V +  + V+   
Sbjct: 1076 IDIYRDRKGGVLKLSQEIYIRKVLDRFNMSG-AKMTNAPVGAHFKLAAVREEDECVDTD- 1133

Query: 677  LMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGTL---AVKWILRYI*GTVDV 507
                +PY+SA GS+MYAM+ TRPD++ A+ ++SRYM  PG++   AVKW++RY+ G  D+
Sbjct: 1134 ---VVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDL 1190

Query: 506  GLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALSTPE 327
             L F++ +     V GYC+S+YA DLD+ RSI+GYVFT     +SW+++LQP VA+ST E
Sbjct: 1191 NLVFTKEK--DFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTE 1248

Query: 326  AEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
            AEY+A+ E  +EA+W+KGL +++G+QQ+K+ +
Sbjct: 1249 AEYIALAEAAKEAMWIKGLLQDMGMQQDKVKI 1280



 Score = 79.7 bits (195), Expect(4) = e-127
 Identities = 38/63 (60%), Positives = 46/63 (73%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            K G P     R+KARLVAKGY QR+G+DY E+F+PVV H SIRIL++LV    LEL  +D
Sbjct: 892  KSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMD 951

Query: 1225 VKT 1217
            VKT
Sbjct: 952  VKT 954



 Score = 71.2 bits (173), Expect(4) = e-127
 Identities = 31/69 (44%), Positives = 48/69 (69%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS I L+KN VYH RTKHI+VR++ +R +VE G++ + K+ T+ NP D LTK +   KF+
Sbjct: 1285 QSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFK 1344

Query: 46   HCLNLISIV 20
              L ++ ++
Sbjct: 1345 SALGVLKLM 1353



 Score = 25.4 bits (54), Expect(4) = e-127
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 1455 LELPKGEKAIGCKWVYTKK 1399
            ++ PK  K IGC+W++  K
Sbjct: 874  VDKPKDRKIIGCRWLFKLK 892



 Score = 95.5 bits (236), Expect = 8e-17
 Identities = 48/140 (34%), Positives = 80/140 (57%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            WI+D   + HM  R+DWF+ F++     + +G++++ + +G G IR+  + G ++ LE+V
Sbjct: 308  WILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENV 367

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKHGNLYFLQGNTSVSEG 1513
            +YVP +++NLIS G LD  G+      G ++   N    ++G     LY L G+T +SE 
Sbjct: 368  KYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGSTVMSEL 427

Query: 1512 IAAVSDSVESDTTKLCHMRL 1453
              A +D V+   T L H RL
Sbjct: 428  CNAETDKVK---TALWHSRL 444


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  353 bits (907), Expect(3) = e-125
 Identities = 184/334 (55%), Positives = 232/334 (69%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF   GKE+ VC L +SLYGLKQ+PR WYKRFD F+ +  Y
Sbjct: 905  KTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGY 964

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
               + D C Y+K+ +D  FI LLLYVDDML+A  ++  IQ  K QL+ EFEMKDLG A K
Sbjct: 965  NRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANK 1024

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGM+I RDR +  I LSQK+YLKK+ +RF + D  K ++ PL  +FKL+    P    E
Sbjct: 1025 ILGMQIHRDRNNRKIWLSQKNYLKKILRRFNMQD-CKSISTPLPVNFKLSSSMCPSNEAE 1083

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPG---TLAVKWILRYI*GTV 513
            ++ M+ +PY SA GSLM+AM+CTRPDI+QAV  VSRYM NPG    +AVK ILRYI GT 
Sbjct: 1084 RKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTS 1143

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
            +V L +  +E T   V GY +SD+A DLDK +S TGYVFT     +SW S LQ  VALST
Sbjct: 1144 NVALCYGGSEFT---VRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALST 1200

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEYMA  +  +EA+W++ L EELG +Q+K+ V
Sbjct: 1201 TEAEYMAATQACKEAIWIQRLLEELGHKQQKIPV 1234



 Score = 75.9 bits (185), Expect(3) = e-125
 Identities = 40/73 (54%), Positives = 52/73 (71%)
 Frame = -1

Query: 1432 GNWMQVGIYKEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQ 1253
            GN     I ++G+      RY+ARLV KGYAQ++GID+NE+FSPVV  T++RI+LA+ A 
Sbjct: 837  GNKWVYKIKRDGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCAT 894

Query: 1252 FGLELVLLDVKTA 1214
            F L L  LDVKTA
Sbjct: 895  FDLHLEQLDVKTA 907



 Score = 72.0 bits (175), Expect(3) = e-125
 Identities = 30/59 (50%), Positives = 45/59 (76%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKF 50
            QS +H+A+N  +H+RTKHI V+YH VR++VE+G + L+K+ T  N AD+LTK +  +KF
Sbjct: 1239 QSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKSINTDKF 1297



 Score =  111 bits (278), Expect = 1e-21
 Identities = 54/141 (38%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            W++D  A++HM  R++WF  +E   G  V+MGN++  ++ GIG I++KM DG ++ +E+V
Sbjct: 292  WLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEV 351

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLK-HGNLYFLQGNTSVSE 1516
            R+V  +KKNL+S+G++DS G +  ++ G++K+    LV+MK  K   NL+ L+G T + E
Sbjct: 352  RHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGET-LQE 410

Query: 1515 GIAAVSDSVESDTTKLCHMRL 1453
              A V+ + E ++T + H++L
Sbjct: 411  ADACVASNGE-ESTMMWHLKL 430


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  352 bits (904), Expect(3) = e-125
 Identities = 184/334 (55%), Positives = 232/334 (69%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF   GKE+ VC L +SLYGLKQ+PR WYKRFD F+ +  Y
Sbjct: 905  KTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGY 964

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
               + D C Y+K+ +D  FI LLLYVDDML+A  ++  IQ  K QL+ EFEMKDLG A K
Sbjct: 965  NRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANK 1024

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGM+I RDR +  I LSQK+YLKK+ +RF + D  K ++  L  +FKL+    P    E
Sbjct: 1025 ILGMQIHRDRNNMKIWLSQKNYLKKILRRFNMQD-CKSISTSLPVNFKLSSSMCPSNEAE 1083

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPG---TLAVKWILRYI*GTV 513
            ++ M+ +PY SA GSLM+AM+CTRPDI+QAV VVSRYM NPG    +AVK ILRYI GT 
Sbjct: 1084 RKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTS 1143

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
            DV L +  +E T   V GY +SD+A DLDK +S TGYVFT     +SW S LQ  VALST
Sbjct: 1144 DVALCYGGSEFT---VRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALST 1200

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEYMA  +  ++A+W++ L EELG +Q+K+ V
Sbjct: 1201 TEAEYMAATQACKKAIWIQRLLEELGHKQQKILV 1234



 Score = 75.9 bits (185), Expect(3) = e-125
 Identities = 40/73 (54%), Positives = 52/73 (71%)
 Frame = -1

Query: 1432 GNWMQVGIYKEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQ 1253
            GN     I ++G+      RY+ARLV KGYAQ++GID+NE+FSPVV  T++RI+LA+ A 
Sbjct: 837  GNKWVYKIKRDGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCAT 894

Query: 1252 FGLELVLLDVKTA 1214
            F L L  LDVKTA
Sbjct: 895  FDLHLEQLDVKTA 907



 Score = 72.0 bits (175), Expect(3) = e-125
 Identities = 30/59 (50%), Positives = 45/59 (76%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKF 50
            QS +H+A+N  +H+RTKHI V+YH VR++VE+G + L+K+ T  N AD+LTK +  +KF
Sbjct: 1239 QSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKF 1297



 Score =  112 bits (279), Expect = 8e-22
 Identities = 54/141 (38%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            W++D  A++HM  R++WF  +E   G  V+MGN++  ++ GIG I++KM DG ++ + +V
Sbjct: 292  WLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEV 351

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLKHG-NLYFLQGNTSVSE 1516
            R+V  +KKNL+S+G++DS G++  ++ G++K+    LV+MK  K G NL+ L+G T + E
Sbjct: 352  RHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGET-LQE 410

Query: 1515 GIAAVSDSVESDTTKLCHMRL 1453
              A V+ + E ++T + H++L
Sbjct: 411  ADACVASNGE-ESTMMWHLKL 430


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  338 bits (867), Expect(4) = e-124
 Identities = 179/334 (53%), Positives = 224/334 (67%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHGDLEE IYM QPEGFE    ++ VC L +SLYGLKQ+PR WYKRFD F+    Y
Sbjct: 894  KTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGY 953

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
               N D C YFK+   ++F+ LLLYVDDML+A  ++  I   K QL+ EFEMKDLG A K
Sbjct: 954  NRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANK 1013

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGM+I RDR +  I LSQK+YLKK+  RF + D  K ++ PL  + K++   SP   E 
Sbjct: 1014 ILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQD-CKSISTPLPINLKVSSSMSPSNEEG 1072

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
            +  M+ +PY SA GSLM+AM+CTRPDI+QAV VVSRYM NPG      VK ILRYI GT 
Sbjct: 1073 RMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTS 1132

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
            DV L +  ++     + GY +SDYA DLDK +S TGYVF    G +SW S LQ  VA ST
Sbjct: 1133 DVALCYGGSDFI---INGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATST 1189

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEY+A  +  +EA+W+K L EELG +QE +S+
Sbjct: 1190 TEAEYVAATQASKEAIWLKMLLEELGHKQEFVSL 1223



 Score = 75.9 bits (185), Expect(4) = e-124
 Identities = 32/69 (46%), Positives = 50/69 (72%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS +HLA+N  +H+RTKHI V+YH +R+ V+EG + L+K+ TA+N AD LTK++  +KF 
Sbjct: 1228 QSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDKFT 1287

Query: 46   HCLNLISIV 20
             C +   ++
Sbjct: 1288 WCRSSCGLI 1296



 Score = 75.1 bits (183), Expect(4) = e-124
 Identities = 35/54 (64%), Positives = 45/54 (83%)
 Frame = -1

Query: 1375 RYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLDVKTA 1214
            RY+ARLV KGYAQ++GID+NE+FSPVV  T++R++LA+ A F L L  LDVKTA
Sbjct: 843  RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTA 896



 Score = 29.3 bits (64), Expect(4) = e-124
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 1533 NTSVSEGIAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKK 1399
            ++ VS+  AA+ + +E+         + LP+G K IG KWV+  K
Sbjct: 790  SSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIK 834



 Score =  109 bits (273), Expect = 4e-21
 Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            W++D  A+YHM  RK+WF  +E   G  V+  +++  ++ GIG I+LKM DG VQ ++DV
Sbjct: 282  WLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDV 341

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLK-HGNLYFLQGNTSVSE 1516
            R+V  +KKNL+S G LD+   ++  + GV+K+    LVVMKG K   NLY L+G T + E
Sbjct: 342  RHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGET-LQE 400

Query: 1515 GIAAVSDSVESDTTKLCHMRL 1453
              A+V+ +   D+T L H +L
Sbjct: 401  AEASVA-ACSPDSTLLWHQKL 420


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
            gi|18542925|gb|AAL75759.1| Putative pol polyprotein
            [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1005

 Score =  370 bits (951), Expect(4) = e-124
 Identities = 197/325 (60%), Positives = 240/325 (73%), Gaps = 3/325 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF V GKE  VC LKRS YGLKQSPRQWYKRFD FM +  +
Sbjct: 604  KTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLKRSFYGLKQSPRQWYKRFDLFMLSHGF 663

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
              S +DSCVY  K  + S IY LLYVDDMLIA+KS+ +I   K QLSSEF+MKDLG A+K
Sbjct: 664  KRSEFDSCVYI-KFVNGSPIY-LLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKK 721

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGMEI RDR S  + LSQ+SY+K + +RF + D AK V+ P+A HFKL+V Q   T E+
Sbjct: 722  ILGMEITRDRNSGLLFLSQQSYIKNVLQRFNMHD-AKLVSIPIAPHFKLSVLQCASTDED 780

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
               M+ +PY+SA GSLMYAMVC+RPD+S A+S+VSRYM NPG     AV+WI RY+ GT 
Sbjct: 781  VEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTA 840

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
            D  LKF R ++    +VGY +SD+A DLDK RS+TGYVFT  S  +SW++TLQP VA ST
Sbjct: 841  DACLKFGRTDK---GLVGYVDSDFAADLDKRRSLTGYVFTISSCAMSWKATLQPVVAQST 897

Query: 332  PEAEYMAVVEGIREAVWMKGLFEEL 258
             EAEYMA+ E  +E+VW+KGLF EL
Sbjct: 898  TEAEYMAIAEACKESVWLKGLFAEL 922



 Score = 74.3 bits (181), Expect(4) = e-124
 Identities = 37/64 (57%), Positives = 47/64 (73%)
 Frame = -1

Query: 1405 KEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQFGLELVLLD 1226
            KEG   +   R+KA+LVAKG++Q  G+DYN+VFSPVV H+SIR   ++VA   LEL  LD
Sbjct: 543  KEGLSPSEPPRFKAKLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLD 602

Query: 1225 VKTA 1214
            VKTA
Sbjct: 603  VKTA 606



 Score = 43.5 bits (101), Expect(4) = e-124
 Identities = 18/33 (54%), Positives = 26/33 (78%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEG 128
            QS I L K+Q++H RTKHI+++YH VR +V +G
Sbjct: 936  QSAICLTKDQMFHERTKHIDIKYHYVRDVVVQG 968



 Score = 30.0 bits (66), Expect(4) = e-124
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 1521 SEGIAAVSDSVESDTTKLCHMRLELPKGEKAIGCKWVYTKKD 1396
            +E + A+ + ++S         + LPK +K + CKW++ +K+
Sbjct: 503  TEAVVAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKE 544



 Score = 85.5 bits (210), Expect = 8e-14
 Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
 Frame = -2

Query: 1827 DWFVKFEKF-DGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDVRYVPEMKKNLISVG 1651
            DWF  ++   +G  V MG++N  ++ GIG +++K +DG+   L+DVR++  M +NLIS+ 
Sbjct: 44   DWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTCTLKDVRHILGMARNLISLS 103

Query: 1650 ELDSRGFEMTLKGGVLKV*SNELVVMKG-LKHGNLYFLQGNTSVSEGIAAVSDSVESDTT 1474
             LD+ G++ +  GGV+KV    LV + G +   NLY L+G+T      AA     E   T
Sbjct: 104  TLDAEGYKYSGSGGVVKVSKGSLVYIIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKT 163

Query: 1473 KLCHMRL 1453
             L HMRL
Sbjct: 164  NLWHMRL 170


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  348 bits (892), Expect(3) = e-124
 Identities = 181/334 (54%), Positives = 232/334 (69%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF+  GKE+ VC L +SLYGLKQ+PR WYKRFD F+ +  Y
Sbjct: 901  KTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDY 960

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
            +  + D C Y+K+     FI LLLYVDDML+   ++  +Q  K QL+ EF+MKDLG A K
Sbjct: 961  SRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANK 1020

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGM+I RDR+   I LSQK+YL+K+ +RF + D  KP++ PL  +FKL+   SP    E
Sbjct: 1021 ILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQD-CKPISTPLPVNFKLSSGMSPSNEAE 1079

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
            +  M+ +PY SA GSLMYAM+CTRPDI+QAV VVSR+M +PG     AVK I+RYI GT 
Sbjct: 1080 RMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTS 1139

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
             V + F  +E T   V GY +SD+A D DK +S TGYVFT   G +SW S LQ  VALST
Sbjct: 1140 GVAVCFGGSELT---VRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALST 1196

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEYMA  +  +EA+WM+ L EELG +QE+++V
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITV 1230



 Score = 74.3 bits (181), Expect(3) = e-124
 Identities = 31/69 (44%), Positives = 50/69 (72%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS +H+A+N  +H+RTKHI V+YH VR++VEEG + ++K+ T +N AD +TK +  +KF 
Sbjct: 1235 QSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDKFI 1294

Query: 46   HCLNLISIV 20
             C +L  ++
Sbjct: 1295 WCRSLYGLL 1303



 Score = 73.6 bits (179), Expect(3) = e-124
 Identities = 39/73 (53%), Positives = 51/73 (69%)
 Frame = -1

Query: 1432 GNWMQVGIYKEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQ 1253
            GN     I ++G+      RY+ARLV KGYAQ++GID+NE+FSPVV  T+IR++LA+ A 
Sbjct: 833  GNKWVYKIKRDGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAA 890

Query: 1252 FGLELVLLDVKTA 1214
              L L  LDVKTA
Sbjct: 891  LDLHLEQLDVKTA 903



 Score =  125 bits (315), Expect = 5e-26
 Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            WIMD  A++HM P +DWF  +E      V+MGN++  ++ G+G IRLKM+DG V++++ V
Sbjct: 291  WIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGV 350

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLK-HGNLYFLQGNTSVSE 1516
            R+V  +KKNL+SVG+LD  G ++  + G+LKV    LVVMK  K   NLY L G+T + E
Sbjct: 351  RHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDT-LQE 409

Query: 1515 GIAAVSDSVESDTTKLCHMRL 1453
              A+V+ + + +TT + H RL
Sbjct: 410  ADASVAAASQEETTMMWHQRL 430


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  347 bits (891), Expect(3) = e-123
 Identities = 181/334 (54%), Positives = 232/334 (69%), Gaps = 3/334 (0%)
 Frame = -3

Query: 1223 ENCFLHGDLEETIYMKQPEGFEVAGKEDRVCNLKRSLYGLKQSPRQWYKRFDKFMKTQKY 1044
            +  FLHG+LEE IYM QPEGF+  GKE+ VC L +SLYGLKQ+PR WYKRFD F+ +  Y
Sbjct: 901  KTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDY 960

Query: 1043 TSSNYDSCVYFKKLKDESFIYLLLYVDDMLIASKSEVEIQRFKNQLSSEFEMKDLGKARK 864
            +  + D C Y+K+     FI LLLYVDDML+   ++  +Q  K QL+ EF+MKDLG A K
Sbjct: 961  SRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANK 1020

Query: 863  ILGMEIERDRRSDTINLSQKSYLKKLFKRFGLDDKAKPVTQPLARHFKLNVEQSPKTVEE 684
            ILGM+I RDR+   I LSQK+YL+K+ +RF + D  KP++ PL  +FKL+   SP    E
Sbjct: 1021 ILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNMQD-CKPISTPLPVNFKLSSGMSPSNEAE 1079

Query: 683  QRLMAEIPYTSAAGSLMYAMVCTRPDISQAVSVVSRYMHNPGT---LAVKWILRYI*GTV 513
            +  M+ +PY SA GSLMYAM+CTRPDI+QAV VVSR+M +PG     AVK I+RYI GT 
Sbjct: 1080 RMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTS 1139

Query: 512  DVGLKFSRNERTGCKVVGYCNSDYADDLDKFRSITGYVFTAVSGPISWRSTLQPTVALST 333
             V + F  +E T   V GY +SD+A D DK +S TGYVFT   G +SW S LQ  VALST
Sbjct: 1140 GVAVCFGGSELT---VRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALST 1196

Query: 332  PEAEYMAVVEGIREAVWMKGLFEELGIQQEKLSV 231
             EAEYMA  +  +EA+WM+ L EELG +QE+++V
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITV 1230



 Score = 73.9 bits (180), Expect(3) = e-123
 Identities = 30/62 (48%), Positives = 47/62 (75%)
 Frame = -1

Query: 226  QSNIHLAKNQVYHARTKHINVRYHKVRKIVEEGEIQLEKVGTANNPADMLTKVVTGEKFR 47
            QS +H+A+N  +H+RTKHI V+YH VR++VEEG + ++K+ T +N AD++TK +  +KF 
Sbjct: 1235 QSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFV 1294

Query: 46   HC 41
             C
Sbjct: 1295 WC 1296



 Score = 73.6 bits (179), Expect(3) = e-123
 Identities = 39/73 (53%), Positives = 51/73 (69%)
 Frame = -1

Query: 1432 GNWMQVGIYKEGSPSASNVRYKARLVAKGYAQRKGIDYNEVFSPVVTHTSIRILLALVAQ 1253
            GN     I ++G+      RY+ARLV KGYAQ++GID+NE+FSPVV  T+IR++LA+ A 
Sbjct: 833  GNKWVYKIKRDGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAA 890

Query: 1252 FGLELVLLDVKTA 1214
              L L  LDVKTA
Sbjct: 891  LDLHLEQLDVKTA 903



 Score =  127 bits (318), Expect = 2e-26
 Identities = 64/141 (45%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1872 WIMDCAASYHMCPRKDWFVKFEKFDGPRVFMGNNNTCKVEGIGKIRLKMNDGVVQELEDV 1693
            WIMD  A++HM P +DWF  +E      V+MGN++  ++ G+G IRLKM+DG V++++ V
Sbjct: 291  WIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGV 350

Query: 1692 RYVPEMKKNLISVGELDSRGFEMTLKGGVLKV*SNELVVMKGLK-HGNLYFLQGNTSVSE 1516
            R+V  +KKNL+SVG+LD  G ++  + G+LKV    LVVMK  K   NLY L G+T + E
Sbjct: 351  RHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDT-LQE 409

Query: 1515 GIAAVSDSVESDTTKLCHMRL 1453
              A+V+ S + +TT + H RL
Sbjct: 410  ADASVAASSQEETTMMWHQRL 430