BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00041587
         (2485 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     221   4e-72
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       207   6e-71
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   204   3e-69
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   208   1e-67
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   212   2e-65
emb|CBI20118.3| unnamed protein product [Vitis vinifera]              216   8e-65
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   207   8e-65
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   201   7e-64
gb|AHL77759.1| polyprotein [Prunus persica]                           214   3e-61
emb|CDF77009.1| hypothetical transposable element-related protei...   194   9e-61
emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]   214   3e-60
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]          199   3e-60
emb|CAN81793.1| hypothetical protein VITISV_020571 [Vitis vinifera]   224   2e-58
emb|CAN83369.1| hypothetical protein VITISV_011463 [Vitis vinifera]   213   2e-56
emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]   191   3e-56
emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]   188   2e-55
gb|AAD12997.1| gag-pol polyprotein [Zea mays]                         185   1e-53
gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]   187   3e-53
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   214   2e-52
gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subc...   188   2e-52

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  221 bits (564), Expect(2) = 4e-72
 Identities = 113/256 (44%), Positives = 161/256 (62%), Gaps = 2/256 (0%)
 Frame = -3

Query: 764  PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 585
            P + QN++S  CL  +GY+ R  +   S+       F    V+G+Y LN ++S    +  
Sbjct: 367  PTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINT 426

Query: 584  SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKID-FNICEPCVMGKM 408
                  E   S D + + +WH RLGH+NK ++  +   GL+     + F  CE C++GKM
Sbjct: 427  ------ERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKM 480

Query: 407  SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 231
            ++ PF G + R++DLL ++H+D+CGP++     G  YFITFTDD+SR+GY+YL+  KS +
Sbjct: 481  TKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSES 540

Query: 230  LDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPDTPQQNGVP 51
             + F  ++NEV+N LG  IK LRSDRGGEY S+ FG+  K+ GI+ Q T P TPQ NGV 
Sbjct: 541  FEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVS 600

Query: 50   ERRNRTLLDMTRSMLS 3
            ERRNRTLLDM RSM+S
Sbjct: 601  ERRNRTLLDMVRSMMS 616



 Score = 79.7 bits (195), Expect(2) = 4e-72
 Identities = 79/343 (23%), Positives = 131/343 (38%), Gaps = 13/343 (3%)
 Frame = -1

Query: 1798 ECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDE-PDNPNPAVGRCYERFLEDDKIDRS 1622
            E LNG+NF  W R +R +L  E+ EYV++VP P+E P+N      R +E+   D      
Sbjct: 19   EKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFEKHTNDALDISC 78

Query: 1621 TMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTT------RMKEI 1460
             ML  M P+L+  YE         +A T   G +     Q    +FNT+      R+ E 
Sbjct: 79   LMLATMSPELQKQYES-------SDAHTTIQGLRGMFENQARDERFNTSKSLFACRLVEG 131

Query: 1459 ESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITL 1280
              V  H I+M    + +  +G P+   +    +L SLP S E  ++  +M+  D  +  L
Sbjct: 132  NPVSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAEL 191

Query: 1279 PMLLGVEAQRREKRG------ESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXX 1118
              +L    +  +K G      +++      +                             
Sbjct: 192  HGMLKTVEESIQKNGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASASNAKKGKKGSAAS 251

Query: 1117 NITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSR 938
            +  C+ C++ GH+  NC +                  V +  L    T++W  D   S  
Sbjct: 252  DAVCFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFD-TGSVA 310

Query: 937  HVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFP 809
            H  KS       + ++ GE  + +GN      + +  V L  P
Sbjct: 311  HSCKSLQGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLP 353


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  207 bits (526), Expect(2) = 6e-71
 Identities = 111/264 (42%), Positives = 164/264 (62%), Gaps = 5/264 (1%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 600
            DVL  P M++NL+S+ C+    Y +     EV +   G  +    + + +Y L    +  
Sbjct: 360  DVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRENNLYKLRPTRA-- 417

Query: 599  NKVVNSSAY-FYECSNSLD--FSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKID-FNIC 432
            N V+N+  +   E  N      S++ +WH+RLGH+N +++  +  SG++ +++ +    C
Sbjct: 418  NVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPC 477

Query: 431  EPCVMGKMSRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVY 255
            E C+ GKM+++ F GK +R+   L+++HSD+CGP+NVK   G  YFI+F DD+SR+G+VY
Sbjct: 478  ESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVY 537

Query: 254  LISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPD 75
            L+  KS + + F  YK EVEN++G  IK LRSDRGGEY    F D+    GI  Q + P 
Sbjct: 538  LLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPS 597

Query: 74   TPQQNGVPERRNRTLLDMTRSMLS 3
            TPQQNGV ERRNRTLLDM RSM+S
Sbjct: 598  TPQQNGVSERRNRTLLDMVRSMMS 621



 Score = 90.5 bits (223), Expect(2) = 6e-71
 Identities = 87/363 (23%), Positives = 147/363 (40%), Gaps = 18/363 (4%)
 Frame = -1

Query: 1813 ELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPD-NPNPAVGRCYERFLEDD 1637
            +L  +E LNG N+S WK  +  IL  + + +V+    P  P  N N  V   Y+R+++ +
Sbjct: 7    QLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWVKAN 66

Query: 1636 KIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIE 1457
               R  +L  M   L   ++     K + +++ + +G+ S +     I    T RMKE  
Sbjct: 67   DKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGT 126

Query: 1456 SVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLP 1277
            SV +H + M M        G PI +  QVS +L SLP+S        +++  + N+ TL 
Sbjct: 127  SVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLL 186

Query: 1276 MLL------------GVEA-----QRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXX 1148
              L             VEA     +R+  RG SS + V    A                 
Sbjct: 187  NELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVK 246

Query: 1147 XXXXXXXXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNA 968
                         C+ C Q GH+  NCP+                 +V E+ L +CD + 
Sbjct: 247  KNADKG------KCFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDLLVVETCLVECDAST 300

Query: 967  WWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVP 788
            W +D   ++ H+  S     + K++K GE  + +G         + ++ L F  +  ++ 
Sbjct: 301  WILD-SGATNHICFSFQETSSWKKLKEGEITLKVGTGEVVSAEAVGDLTLFFQDRYLILK 359

Query: 787  TIL 779
             +L
Sbjct: 360  DVL 362


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  204 bits (519), Expect(2) = 3e-69
 Identities = 107/256 (41%), Positives = 159/256 (62%), Gaps = 2/256 (0%)
 Frame = -3

Query: 764  PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 585
            P M +N++S  CL  +GY+  I     S+  +         ++G++ LN    D   + N
Sbjct: 455  PAMSRNIISASCLMTEGYKFIIEDHGCSIFLNDMFYGYAPVLNGLFILNL---DDAPIFN 511

Query: 584  SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKID-FNICEPCVMGKM 408
             +A     +N    + + +WH RLGH+++ ++  +   G++    ++ F  CE C++GKM
Sbjct: 512  INAKRLRPNN---MNSTFIWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKM 568

Query: 407  SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 231
            ++ PF G+  R++DLL +IH+D+CGP++     G  YFITFTDDYSR+GY+YL+  KS +
Sbjct: 569  TKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSES 628

Query: 230  LDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPDTPQQNGVP 51
             + F  ++NEV+NQLG  IK LRSDRGGE+ S+ FG+  K  GI+ Q T P TPQ NGV 
Sbjct: 629  FEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVS 688

Query: 50   ERRNRTLLDMTRSMLS 3
            ER NRTLLDM R M+S
Sbjct: 689  ERCNRTLLDMVRLMMS 704



 Score = 87.8 bits (216), Expect(2) = 3e-69
 Identities = 84/360 (23%), Positives = 143/360 (39%), Gaps = 10/360 (2%)
 Frame = -1

Query: 1858 LLPV*CPMASKAVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEP-DNP 1682
            + P+  P +S A+   L K E LNG+NF+ W R +R +L  +K E+V++ PIPD P DN 
Sbjct: 86   MAPIAVPTSSFALRSILKK-EKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPADNA 144

Query: 1681 NPAVGRCYERFLEDDKIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQ 1502
               +   Y++  ++       ML  M+ DL+  +E  +    M  A+   +  Q++T   
Sbjct: 145  AATLKSAYKKACDESLDVSCLMLAAMNSDLQKQFENIEAYD-MIVALKGMFETQARTKRF 203

Query: 1501 LLIGKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVV 1322
             +     + ++ E   V  H I+M    + +  +G P+   +    +L SLP S    ++
Sbjct: 204  EISKNLFSCKLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFIL 263

Query: 1321 AINMSGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXX 1142
              +M+G D N+  L MLL   A+   K+  S    V +  +                   
Sbjct: 264  NFHMNGLDKNLTELHMLLKT-AEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLDG 322

Query: 1141 XXXXXXXXNI--------TCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCV-VSESLL 989
                               C+ C++ GH+  NC +                 + V + LL
Sbjct: 323  IQTNKPKLKTKSGPTQENECFYCKEPGHWKRNCKKYLADLKKNGGTKPSTSGINVIDVLL 382

Query: 988  DDCDTNAWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFP 809
             D   N+W  D   S  H+  S       + +  GE  + +GN      L    + L  P
Sbjct: 383  ADSSVNSWVFD-TGSVAHICNSMQSLTKNRRVARGEMDLRVGNKAKVAALSAETLPLVLP 441


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  208 bits (529), Expect(2) = 1e-67
 Identities = 108/273 (39%), Positives = 167/273 (61%), Gaps = 11/273 (4%)
 Frame = -3

Query: 788  YYTDVLVAPNMRQNLVSVPCLDNKGYEV---RIRSGEVSVRKHGRILF*GTKVDGMYHLN 618
            +  +VL  P++R+NL+ +  L   GY V         V ++   +++  G+ +D +Y L 
Sbjct: 670  FLKNVLYVPSIRRNLIPISSLSKNGYSVCFNEFYDDSVVIKFREQMICSGSLIDSLYIL- 728

Query: 617  QKSSDFNKVVNSSAYFYEC------SNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPR 456
             K +   ++ NS    ++          ++ S + +WH+RLGH+N D++S +   G +  
Sbjct: 729  -KVTPELQLTNSEVNNFDIVAPLKRKRPIELSYTYLWHLRLGHINLDRISLLVKDGPLSS 787

Query: 455  IKID-FNICEPCVMGKMSRKPFG-KAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTD 282
            +K++    CE C+ GKM+++PF  K  R+ND+L++IHSD+CGP++V+   G  YF+TFTD
Sbjct: 788  LKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTD 847

Query: 281  DYSRFGYVYLISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHG 102
            DYSR+GY+YL+ +KS   + F ++K E+E + G  IK LRSD GGEY S  F  F    G
Sbjct: 848  DYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLRSDHGGEYISREFITFLSEQG 907

Query: 101  IIHQFTMPDTPQQNGVPERRNRTLLDMTRSMLS 3
            I  Q + P  PQQNGV ERRNRTL++M RSM+S
Sbjct: 908  ITSQLSAPGMPQQNGVAERRNRTLMEMVRSMMS 940



 Score = 78.6 bits (192), Expect(2) = 1e-67
 Identities = 72/347 (20%), Positives = 143/347 (41%), Gaps = 7/347 (2%)
 Frame = -1

Query: 1792 LNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEP-DNPNPAVGRCYERFLEDDKIDRSTM 1616
            L G N+  WKR +  +L  E+ ++V+     ++P +       + ++++++ D++ R  +
Sbjct: 337  LEGPNYVDWKRNLDILLTAEEYKFVLSEVCLEKPGEGATQDQIKAHQKWVKADEMARCYI 396

Query: 1615 LTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVVDHCI 1436
            L  M   L+  ++       + E + + +G+Q+    Q  + +  T++M+E   V  H +
Sbjct: 397  LASMSNVLQHQHQKMDTAYDILENLKEMFGDQTSAARQNTLREILTSKMEEGTQVRTHVL 456

Query: 1435 RMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLLG--V 1262
            +M  +   +  +G  +    Q+  +L++LP S +   +  NM+  D    TL  LL   V
Sbjct: 457  KMMSLLNDMEVLGAEVDKATQIEMVLNTLPPSFQQFRLNYNMNKMD---FTLSKLLNELV 513

Query: 1261 EAQRREKRGES----SPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNITCYQCR 1094
             AQ   K+G +    +   V   V                               C+ C+
Sbjct: 514  AAQTIIKQGAAPVVLNIERVFSSVQKKGKKKKNVKPNNNGAANGVNGVVKKPKGKCFHCK 573

Query: 1093 QKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVEKSRDC 914
            Q  H+   CP                  +V E+ L    T+ W +D   ++ HV  S   
Sbjct: 574  QPSHWKLQCPTWLAKKKQGTSPFH---LLVVETCLAVLTTHQWCVDLGATN-HVCNSLQG 629

Query: 913  FVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVPTILMY 773
            F   +++  GE  +++GN +   VL + N+ L+F     L    ++Y
Sbjct: 630  FQETRQLSKGEVNIFLGNGSEVAVLAVGNIALNFKNNRTLFLKNVLY 676


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  212 bits (539), Expect(2) = 2e-65
 Identities = 123/263 (46%), Positives = 160/263 (60%), Gaps = 4/263 (1%)
 Frame = -3

Query: 782  TDVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKS-- 609
            T+VL  P +R+NLVS   L+N G+ +   S +V + K G  +  G   DGM+ LN  +  
Sbjct: 394  TNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGKGYMSDGMWKLNVMTII 453

Query: 608  -SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKIDFNI- 435
             S+ NK  ++S Y  E SN        +WH RLGHVN D L  + +   IP  +I+ N  
Sbjct: 454  KSNMNKA-STSTYMLESSN--------LWHGRLGHVNYDTLRRLINLNHIPTFQINSNHK 504

Query: 434  CEPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVY 255
            CE CV  K++R  F    R+ + LD+IHSDIC    V+T  G  YFITF DD +++ YVY
Sbjct: 505  CETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVY 564

Query: 254  LISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPD 75
            L+  K  A++ F+ YK EVENQL  KIKVLRSDRGGEY S  F D C  HGIIH+ T P 
Sbjct: 565  LLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESP-FVDICAQHGIIHETTAPY 623

Query: 74   TPQQNGVPERRNRTLLDMTRSML 6
            +PQ NGV ER+NRTL +M  +ML
Sbjct: 624  SPQSNGVAERKNRTLKEMMNAML 646



 Score = 67.4 bits (163), Expect(2) = 2e-65
 Identities = 73/361 (20%), Positives = 144/361 (39%), Gaps = 17/361 (4%)
 Frame = -1

Query: 1804 KTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPD-EPDNPNPAVGRCYERFLEDDKID 1628
            K E  +G NF  W++++   L    +   +    P  + D  +  V    + +   D + 
Sbjct: 40   KPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLC 99

Query: 1627 RSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVV 1448
            R+ ++  +   L  +Y   +  K ++E++ + Y  +     + ++G+F   +M + ++VV
Sbjct: 100  RNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVV 159

Query: 1447 DHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLL 1268
                 + +I   I A G  + +  QV+ ++  LP + +     +    +++++  L + L
Sbjct: 160  SQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRL 219

Query: 1267 GVEAQRR--EKRG-----ESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNIT 1109
             +E   R  EK+G     E+  + V    +                              
Sbjct: 220  RIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGK 279

Query: 1108 CYQCRQKGHY*SNC-------PEXXXXXXXXXXXXKDI--VCVVSESLLDDCDTNAWWID 956
            C+ C ++GH   +C       P+             DI    VVSE  L   +   WWID
Sbjct: 280  CFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWID 339

Query: 955  YYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVPTILM 776
               ++RHV   +  F   + I+ GE +V+MGN+   ++ G   V L       L  T ++
Sbjct: 340  -TGATRHVCSDKKMFSTFEPIENGE-KVFMGNSATSEIKGQGKVILKMTSGKELTLTNVL 397

Query: 775  Y 773
            Y
Sbjct: 398  Y 398


>emb|CBI20118.3| unnamed protein product [Vitis vinifera]
          Length = 1354

 Score =  216 bits (549), Expect(2) = 8e-65
 Identities = 111/264 (42%), Positives = 164/264 (62%), Gaps = 10/264 (3%)
 Frame = -3

Query: 764  PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 585
            P++ +NLVS+  LD  GY V   SG++S+  +   +  G   DG+Y ++        ++ 
Sbjct: 728  PSISRNLVSLSKLDATGYSVLFSSGQLSLMLNSVTIGSGILCDGLYKISLNHEFAQALIT 787

Query: 584  SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI-DFNICEPCVMGKM 408
              +        ++ + S++WH RLGH++++++  +   G++  +   DF++C  C+ GK 
Sbjct: 788  LHSNVGSKRGLINENSSILWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQ 847

Query: 407  SRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYAL 228
            ++     A RSN+LL+IIH+DICGPL++    G  YFITF DD SR+GYVYL+ +KS A+
Sbjct: 848  TKHTKKGATRSNELLEIIHTDICGPLSIPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAI 907

Query: 227  DIFISYKNEVENQLGIKIKVLRSDRGGEY---------NSEIFGDFCKNHGIIHQFTMPD 75
            DIF  +  EVE QL  KIK++RSD+GGEY         N   F  F + HGI  Q+TMP 
Sbjct: 908  DIFEMFITEVERQLDKKIKIVRSDQGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPG 967

Query: 74   TPQQNGVPERRNRTLLDMTRSMLS 3
            TPQQNGV ERRNRTL++M RSM+S
Sbjct: 968  TPQQNGVAERRNRTLMEMVRSMMS 991



 Score = 61.2 bits (147), Expect(2) = 8e-65
 Identities = 65/329 (19%), Positives = 122/329 (37%), Gaps = 5/329 (1%)
 Frame = -1

Query: 1789 NGSNFSTWKRRIRHIL--FHEKVEYVIDVPIPDEPDNPNPAVGRCYERFLEDDKIDRSTM 1616
            +GSNFS W  R +  L      +  + D P P+  D+  P      + + + +++    M
Sbjct: 388  DGSNFSEWYERGQFSLGILDLDLALISDKP-PEATDDSTPEQVEQSKAWSKSNRLSLMFM 446

Query: 1615 LTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVVDHCI 1436
               +  +++      +      ++V + +    K+    L+ +  T +    + +  H +
Sbjct: 447  RMTIANNIKTSLPQTEFASEFLKSVEERFKRADKSLAGTLMAELTTMKYDGQKGIQQHIL 506

Query: 1435 RMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLLGVEA 1256
             MT     + A+G  + +   V  +L+SLP       +  N +    N+  L      E 
Sbjct: 507  NMTEKTAKLKALGMGMDESFLVQFVLNSLPSQFAPFKIHYNTNSDQWNLNELTSKCIQEE 566

Query: 1255 QRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXN---ITCYQCRQKG 1085
             R  + G +    VT  V                                ++CY C +KG
Sbjct: 567  VRLRQEGHNLALAVTHGVTKKKGKFKKGRNFPPKKSGPGEGSQNHDGKFTVSCYFCGKKG 626

Query: 1084 HY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVEKSRDCFVN 905
            H   +C +             ++  V  ES L +  +N WWID   ++ HV      F+ 
Sbjct: 627  HVKKDCIKRKAWFEKRGI---NLSFVCYESNLAEVPSNTWWIDSGATT-HVTNLMQGFLT 682

Query: 904  IKEIKTGEHRVYMGNNTYCDVLGIRNVRL 818
             ++ K  E  +YMGN    +V+ +   RL
Sbjct: 683  TRKPKESEKFLYMGNRLKVEVVAVGTYRL 711


>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  207 bits (526), Expect(2) = 8e-65
 Identities = 121/263 (46%), Positives = 158/263 (60%), Gaps = 4/263 (1%)
 Frame = -3

Query: 782  TDVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKS-- 609
            T+VL  P +R+NLV    L+N G+ +   S +V + K G  +  G   DGM+ LN  +  
Sbjct: 394  TNVLYVPEIRKNLVFGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLNVMTII 453

Query: 608  -SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKIDFNI- 435
             S+ NK  ++S Y  E SN        +WH RL HVN D L  + +   IP  +I+ N  
Sbjct: 454  KSNMNKA-STSTYMLESSN--------LWHGRLRHVNYDTLRRLINLNHIPTFQINSNHK 504

Query: 434  CEPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVY 255
            CE CV  K++R  F    R+ + LD+IHSDIC    V+T  G  YFITF DD +++ YVY
Sbjct: 505  CETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVY 564

Query: 254  LISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPD 75
            L+  K  A++ F+ YK EVENQL  KIKVLRSDRGGEY S  F D C  HGIIH+ T P 
Sbjct: 565  LLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESP-FVDICAQHGIIHETTTPY 623

Query: 74   TPQQNGVPERRNRTLLDMTRSML 6
            +PQ NGV ER+NRTL +M  +ML
Sbjct: 624  SPQSNGVAERKNRTLKEMMNAML 646



 Score = 70.1 bits (170), Expect(2) = 8e-65
 Identities = 79/376 (21%), Positives = 151/376 (40%), Gaps = 20/376 (5%)
 Frame = -1

Query: 1840 PMASKAVSHELS---KTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPD-EPDNPNPA 1673
            P  S AV   +S   K E  +G NF  W++++   L    +   +    P  + D  +  
Sbjct: 25   PAMSTAVPISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQ 84

Query: 1672 VGRCYERFLEDDKIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLI 1493
            V    + +   D + R+ ++  +   L  +Y   +  K ++E++ + Y  +     + ++
Sbjct: 85   VISAIDAWKHSDFLCRNYVMNGLTDSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVV 144

Query: 1492 GKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAIN 1313
            G+F   +M + ++VV     + +I   I A G  + +  QV+ ++  LP + +     + 
Sbjct: 145  GRFLDYKMVDSKTVVSQVQELQVILHEIHADGMMLSETFQVAAIIEKLPPAWKDFKNYLK 204

Query: 1312 MSGRDVNMITLPMLLGVEAQRR--EKRG-----ESSPSHVTEEVAXXXXXXXXXXXXXXX 1154
               +++++  L + L +E   R  EK+G     E+  + V    +               
Sbjct: 205  HKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQANFVEHGQSSKAKTNNNKGKGSKL 264

Query: 1153 XXXXXXXXXXXXNITCYQCRQKGHY*SNC-------PEXXXXXXXXXXXXKDI--VCVVS 1001
                           C+ C ++GH   +C       P+             DI    VVS
Sbjct: 265  GPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDNITKNVSDIDLTTVVS 324

Query: 1000 ESLLDDCDTNAWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVR 821
            E  L   +   WWID   ++RHV   +  F   + I+ GE +V+MGN+T  ++ G   V 
Sbjct: 325  EVNLVGSNPKEWWID-TGATRHVCSDKKMFSTFEPIENGE-KVFMGNSTTSEIKGQGKVI 382

Query: 820  LSFPGQNNLVPTILMY 773
            L       L  T ++Y
Sbjct: 383  LKMTSGKELTLTNVLY 398


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  201 bits (512), Expect(2) = 7e-64
 Identities = 108/256 (42%), Positives = 155/256 (60%), Gaps = 2/256 (0%)
 Frame = -3

Query: 764  PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 585
            P + +N++S  CL  +GY  R    + SV  +    F    + G+Y +N        V N
Sbjct: 343  PALCKNVISASCLQAEGYGFRSVDNDCSVYYNDIFYFHAPMMSGLYIVNLNGYS---VYN 399

Query: 584  SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKID-FNICEPCVMGKM 408
             +A   +     D + + +WH RLGH+N+ ++  +   GL+     + F  CE C++GKM
Sbjct: 400  INA---KRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKM 456

Query: 407  SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 231
            ++ PF G++ R+++LL ++H+D+CGP++     G  YF TFTDD+SR+GYVYL+  KS +
Sbjct: 457  TKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSES 516

Query: 230  LDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPDTPQQNGVP 51
             + F  + NEV+N LG  IK LRSDRGGEY S  FG+  K  GI+ Q T P TPQ NGV 
Sbjct: 517  FEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVS 576

Query: 50   ERRNRTLLDMTRSMLS 3
            E RNRTLLDM RSM+S
Sbjct: 577  EWRNRTLLDMVRSMMS 592



 Score = 72.4 bits (176), Expect(2) = 7e-64
 Identities = 81/355 (22%), Positives = 136/355 (38%), Gaps = 9/355 (2%)
 Frame = -1

Query: 1840 PMASKAVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIP-DEPDNPNPAVGR 1664
            P  S      + + E L G+N   W R +R +L  E  E+V+  P P D P+N   A  R
Sbjct: 4    PAPSSFNLRSILEKEKLTGTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRR 63

Query: 1663 CYERFLEDDKIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKF 1484
             +E+   D       ML  M P+L+  YE         +A T   G ++    Q    +F
Sbjct: 64   EHEKRCNDYLDISCLMLATMSPELQRQYEA-------LDAHTIITGLRNMFEDQARAKRF 116

Query: 1483 NTT------RMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVV 1322
            NT+      R+ E   V  H I+M    + +  +G P+   +    +L SLP S E  ++
Sbjct: 117  NTSKSLFACRLAEGNPVSPHVIKMIGYNETLEKLGFPLSQELATDLILQSLPPSFEPFIL 176

Query: 1321 AINMSGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXX 1142
              NM+  +  +  LP +L    +  E+  + + +HV                        
Sbjct: 177  NFNMNNMNRTLTKLPGML----KTAEESIKKNSNHV---------------MVMHKRKPN 217

Query: 1141 XXXXXXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVS--ESLLDDCDTNA 968
                    +  C+ C++ GH+  NC +            K     ++  E  L    T++
Sbjct: 218  NKKSGPAKDAECFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDS 277

Query: 967  WWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQ 803
            W  D   S  H+ KS       + +  GE  + +GN      + +  + LS P +
Sbjct: 278  WVFD-TGSVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSR 331


>gb|AHL77759.1| polyprotein [Prunus persica]
          Length = 1363

 Score =  214 bits (545), Expect(2) = 3e-61
 Identities = 119/270 (44%), Positives = 162/270 (60%), Gaps = 12/270 (4%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 600
            DV+  P+M++NL+SV  L     +        S+ ++  ++  G   DGM+ LN K  + 
Sbjct: 350  DVVYIPSMKRNLISVSKLVKSNLQFEFDESGFSIFRNKVMIGNGFLDDGMFRLNCKKPN- 408

Query: 599  NKVVNSSAYFYECSNSLDFSDSL-MWHMRLGHVNKDKLSCMSSSGLIPRIKIDF--NICE 429
                N +          D  +S  +WH RLGHV+ ++++ ++   L+P +      N+C 
Sbjct: 409  PSTANLNINLISTKRKADKEESYRLWHKRLGHVSNERMNLLNKENLLPPLNHHDKDNVCI 468

Query: 428  PCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLI 249
             CV GK++      A RS  LL+IIH+DICGP   KTH G  YFITFTDD+SR+GYVYLI
Sbjct: 469  ECVKGKLTNLRKKGATRSEKLLEIIHTDICGPFPTKTHDGFKYFITFTDDFSRYGYVYLI 528

Query: 248  SKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEY---------NSEIFGDFCKNHGII 96
            S+KS ALD+F  YK EVENQL  KIKV+RSDRGGE+         N   F  F +  GI+
Sbjct: 529  SEKSNALDMFKVYKTEVENQLDSKIKVVRSDRGGEFYGRFDEKGRNPGPFAKFLQEEGIV 588

Query: 95   HQFTMPDTPQQNGVPERRNRTLLDMTRSML 6
             Q+T P TPQQNGV ERRNRTL++M RS++
Sbjct: 589  AQYTNPGTPQQNGVAERRNRTLIEMIRSLM 618



 Score = 50.8 bits (120), Expect(2) = 3e-61
 Identities = 67/330 (20%), Positives = 120/330 (36%), Gaps = 8/330 (2%)
 Frame = -1

Query: 1825 AVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRC-YERF 1649
            +V+H  +  E L GSN++ W+  +   L     E VI+   P EP     A  +  Y ++
Sbjct: 4    SVNH--NSIETLIGSNYTKWREDVEIALGLLDYEMVIEEEAPAEPAATASAEAKAKYAKW 61

Query: 1648 LEDDKIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRM 1469
             + +K+    M   + P +          K   +++ + + E  K  I  L+ +    + 
Sbjct: 62   TKANKMAILIMRRSISPSVRGSITPSDNAKKFIDSIAEKFQESKKAEIGTLMAQLTDAKY 121

Query: 1468 KEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLP---RSLESVVVAINMSGRD 1298
               + V  H + M  I   + A+   + + M V   ++SLP   + L S  VA       
Sbjct: 122  NGEKCVRTHILNMLEIGNKLQALKVNVDENMMVHFAINSLPSTFKHLRSTYVA------Q 175

Query: 1297 VNMITLPMLLGV---EAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXX 1127
              + T+  L+G+   E Q  +K       ++                             
Sbjct: 176  KEIWTVTDLIGICVQEEQNMKKDKAEERVNMVHNFKPKKDFGKGKIAWKKNKEEKGSKGL 235

Query: 1126 XXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDI-VCVVSESLLDDCDTNAWWIDYY 950
                  CY C++ GH   NC              K   V V  ES   +  +++WW+D  
Sbjct: 236  EPEGFKCYFCKKFGHMKRNCDRYKCWLDKQKAKGKSSQVNVCFESNAIEISSDSWWLD-S 294

Query: 949  VSSRHVEKSRDCFVNIKEIKTGEHRVYMGN 860
             ++ HV      F   +     E +V++GN
Sbjct: 295  GATVHVANCLQGFKTKRLPSKAEMKVFVGN 324


>emb|CDF77009.1| hypothetical transposable element-related protein, partial [Boechera
            divaricarpa]
          Length = 1350

 Score =  194 bits (492), Expect(2) = 9e-61
 Identities = 106/272 (38%), Positives = 159/272 (58%), Gaps = 14/272 (5%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDG--MYHLNQ-KS 609
            D  VAP+ R+NL+S   LD  GY      G+ ++  +  I+  GT ++   +Y L+   S
Sbjct: 350  DTFVAPSFRRNLISGSYLDKSGYSCLTEHGKTTLSLNSVIIGTGTLLENHSLYMLDTVDS 409

Query: 608  SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI-DFNIC 432
             D +  + +     +  N+   S  ++WH RLGH+++D++  + S G++  I   +  IC
Sbjct: 410  QDESLNIETRGTKRKFENA---SSGILWHKRLGHISRDRIERLVSEGILSSIDFTNCEIC 466

Query: 431  EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 252
              C+ GK ++     A R+ ++L++IH+DICGP    +  G  YFI+F DDYSR+ Y++L
Sbjct: 467  VDCIKGKQTKHKKSGAYRATEVLELIHTDICGPFPTASWNGQQYFISFIDDYSRYAYIFL 526

Query: 251  ISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEI----------FGDFCKNHG 102
            I +KS +LD+F  +K EVENQL  KIK +RSDRGGEY              F  + +  G
Sbjct: 527  IHEKSESLDVFRKFKAEVENQLERKIKFVRSDRGGEYYGRYDGSGEQRPGPFAKYLEECG 586

Query: 101  IIHQFTMPDTPQQNGVPERRNRTLLDMTRSML 6
            I+ Q+TMP +P  NGV ERRNRTL DM RSM+
Sbjct: 587  IVPQYTMPGSPSMNGVSERRNRTLKDMVRSMI 618



 Score = 69.7 bits (169), Expect(2) = 9e-61
 Identities = 67/340 (19%), Positives = 135/340 (39%), Gaps = 3/340 (0%)
 Frame = -1

Query: 1822 VSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGR-CYERFL 1646
            VS  L     L GSNF  WK +++ +L    ++  + +  P  P + + A  +  YE++ 
Sbjct: 9    VSANLGSIPTLTGSNFKEWKSKVKIVLGCMDLDLALRMEQPTSPTDTSTAEYKTVYEKW- 67

Query: 1645 EDDKIDRSTMLTFMDPDLEIIYEGYQI--TKVMFEAVTQSYGEQSKTYIQLLIGKFNTTR 1472
              ++ +R  ++  MD   E      +I   K     +   + +  K  I  L+ +F+T R
Sbjct: 68   --ERSNRIGLMIIMDTIPETFRGDEEIKNLKQFLAEMDLRFAKSDKAEISTLLYRFSTMR 125

Query: 1471 MKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVN 1292
                 ++ ++ + M+ I   + A+   +P+ + +  +L+SLP     +  + N       
Sbjct: 126  YHGKGNIREYILEMSNIVSKLKALKTELPEEVLIFFVLNSLPPQFNQLKSSYNTQKEKWT 185

Query: 1291 MITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNI 1112
            +  L +   V+ + R K+  S  +H+                                + 
Sbjct: 186  LNEL-ISYCVQEEDRMKQERSESAHMVNTSKVQGKRRKIEVVKNDAAKGPTQKKQTKVDD 244

Query: 1111 TCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHV 932
            TC+ C++ GH   +C +              +  V +E  L +   N WW+D   ++   
Sbjct: 245  TCFFCKKVGHMKKDCTKYHAWRGKKGSF---LAMVCTEVNLVEVPKNTWWLDSGATTNIS 301

Query: 931  EKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSF 812
               + C ++ ++    E R+Y+ N    DV  I + RL F
Sbjct: 302  VSLQGC-LSYRKPTNAERRIYVANGIPVDVEAIAHFRLFF 340


>emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]
          Length = 1180

 Score =  214 bits (546), Expect(2) = 3e-60
 Identities = 113/264 (42%), Positives = 161/264 (60%), Gaps = 10/264 (3%)
 Frame = -3

Query: 764  PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 585
            P++ +NLVS+  LD  GY V   SG++S+  +      G   DG+Y +         ++ 
Sbjct: 330  PSISRNLVSLSKLDATGYXVLFSSGQLSLMLNSVTXGSGILCDGLYKIXLNHEFAQALIT 389

Query: 584  SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI-DFNICEPCVMGKM 408
              +        ++ + S++WH RLGH++++ +  +   G++  +   DF++C  C+ GK 
Sbjct: 390  LHSNVGSKRGLINENSSILWHRRLGHISREXIERLVKEGILQNLDFTDFHVCVDCIKGKQ 449

Query: 407  SRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYAL 228
            ++     A RSN+LL+IIH+DICGPL+V    G  YFITF DD SR+GYVYL+ +KS A+
Sbjct: 450  TKHTKKGATRSNELLEIIHTDICGPLSVPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAI 509

Query: 227  DIFISYKNEVENQLGIKIKVLRSDRGGEY---------NSEIFGDFCKNHGIIHQFTMPD 75
            DIF  +  EVE QL  KIK++RSDRGGEY         N   F  F + HGI  Q+TMP 
Sbjct: 510  DIFEMFITEVERQLDKKIKIVRSDRGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPG 569

Query: 74   TPQQNGVPERRNRTLLDMTRSMLS 3
            TPQQNGV ERRNRTL++M RSM+S
Sbjct: 570  TPQQNGVAERRNRTLMEMVRSMMS 593



 Score = 47.4 bits (111), Expect(2) = 3e-60
 Identities = 60/329 (18%), Positives = 118/329 (35%), Gaps = 5/329 (1%)
 Frame = -1

Query: 1789 NGSNFSTWKRRIRHIL--FHEKVEYVIDVPIPDEPDNPNPAVGRCYERFLEDDKIDRSTM 1616
            +GSNFS W  R++  L      +  + D P P+  D+  P      + + + +++    M
Sbjct: 5    DGSNFSEWYERVQFSLGVLDLDLALISDKP-PEATDDSTPEQVEQSKAWXKSNRLSLMFM 63

Query: 1615 LTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESVVDHCI 1436
               +  +++      +      ++V + +    K+    L+ +  T +    + +  H +
Sbjct: 64   RMTIANNIKTSLXQTEFASEFLKSVEERFKRADKSLAGTLMXELTTMKYDGQKGIQQHIL 123

Query: 1435 RMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPMLLGVEA 1256
             MT  A  + A+G  + +   V  +L+SLP       +  N +    N+  L      E 
Sbjct: 124  NMTEKAAKLKALGMGMDESFLVQFVLNSLPSXFAPFKIHYNTNSDQWNLNELTSKCIQEE 183

Query: 1255 QRREKRGESSPSHVTEEVA---XXXXXXXXXXXXXXXXXXXXXXXXXXXNITCYQCRQKG 1085
             R  + G +    VT  V                                ++CY C +KG
Sbjct: 184  VRLRQEGHNXAXXVTHGVTKKKGKFKKGXNFPPKKSXPGEGSQSHDGKFTVSCYFCGKKG 243

Query: 1084 HY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVEKSRDCFVN 905
            H   +                   C+  ++  +    N  ++ Y  +   V      F+ 
Sbjct: 244  HVKKD-------------------CIKRKAWFEKRGINLSFVCYESNLAEVSFKYLGFLT 284

Query: 904  IKEIKTGEHRVYMGNNTYCDVLGIRNVRL 818
             ++ K  E  +YMGN    +V+ +   RL
Sbjct: 285  TRKPKESEKFLYMGNRLKXEVVAVGTYRL 313


>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score =  199 bits (506), Expect(2) = 3e-60
 Identities = 117/261 (44%), Positives = 155/261 (59%), Gaps = 3/261 (1%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKS--S 606
            +VL  P +R+NLVS   L+  G+ +   S  V + K+G  +  G   DG++ LN  +   
Sbjct: 384  NVLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNGMYVGKGYVNDGLFKLNVMTLKP 443

Query: 605  DFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKIDF-NICE 429
              N    SSAY  E SN        +WH RLGHVN + L  + +   IP  +ID  + C+
Sbjct: 444  TINNKATSSAYLLESSN--------IWHGRLGHVNFNSLRKLINMKHIPNFQIDLKHKCK 495

Query: 428  PCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLI 249
             CV  K++R  F    R+++ LD+IHSDIC   +++T  G  YFITF DD +++ YVYL+
Sbjct: 496  TCVEAKLTRSSFQIIQRNSEPLDLIHSDICDFKSIQTRGGNKYFITFIDDCTKYCYVYLL 555

Query: 248  SKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPDTP 69
              K  ALD FI YKNEVENQL  KIK LRSDRGGEY    F   C+  GIIHQ T P +P
Sbjct: 556  KSKDEALDKFILYKNEVENQLNRKIKELRSDRGGEYVVP-FMSLCEQSGIIHQVTAPYSP 614

Query: 68   QQNGVPERRNRTLLDMTRSML 6
            Q NG+ ER+NRTL +M  +ML
Sbjct: 615  QSNGIAERKNRTLKEMMNAML 635



 Score = 62.8 bits (151), Expect(2) = 3e-60
 Identities = 64/353 (18%), Positives = 136/353 (38%), Gaps = 9/353 (2%)
 Frame = -1

Query: 1804 KTECLNGSNFSTWKRRIRHILFHEKVEYVI--DVPIPDEPDNPNPAVGRCYERFLEDDKI 1631
            + E  NG NF  W++++   L    +   +  D P P E +  +  V    + +   D +
Sbjct: 41   RPEKFNGQNFKRWQQKMFFYLTTLNLARFLTKDAPKPKEGET-DIQVASAIDAWHHSDFL 99

Query: 1630 DRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEIESV 1451
             ++ ++  +   L  +Y G +  K ++E++ + Y  +     + ++G+F   +M + ++V
Sbjct: 100  CKNYVMNGLSDSLYNVYIGKKTAKELWESLDRKYKTEDAGTKKFVVGRFLDFKMVDSKTV 159

Query: 1450 VDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITLPML 1271
            +     + +I   I A G  + +  QV+ ++  LP + +     +    +++N+  L + 
Sbjct: 160  ISQVQELQIILSEILAEGMHLSETFQVAAIIEKLPPAWKDFKSYLKHKQKEMNIEGLVVK 219

Query: 1270 LGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNITCYQCRQ 1091
            L +E    + R       ++   A                              CY C +
Sbjct: 220  LRIE---EDNRNAERIGAISMAKANFVEHGPKKKKKKLGPKGGISKKQTKFQGKCYNCDK 276

Query: 1090 KGHY*SNC-------PEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHV 932
             GH  S+C                      ++  VV E  +   +   WWID   ++RHV
Sbjct: 277  MGHKASDCRLPKKKREANVVENITQHVSDINLSAVVLEVNMVGSNPREWWID-TGATRHV 335

Query: 931  EKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSFPGQNNLVPTILMY 773
               +  F +  E  +   +++MGN+   ++ G   V L       L    ++Y
Sbjct: 336  CSDKGLFTSF-EAASNREKLFMGNSATSEIEGQGKVALKMTSGKELTLNNVLY 387


>emb|CAN81793.1| hypothetical protein VITISV_020571 [Vitis vinifera]
          Length = 1193

 Score =  224 bits (570), Expect(2) = 2e-58
 Identities = 116/270 (42%), Positives = 168/270 (62%), Gaps = 11/270 (4%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 600
            +  V P+ R+NL+SV CLD  GY     +G VS+  +  I+  G+  D +Y LN K+++ 
Sbjct: 218  ETFVVPSFRRNLISVSCLDKFGYCCSFGNGMVSLYLNSNIIGIGSLTDKLYKLNIKATNG 277

Query: 599  NKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI-DFNICEPC 423
            N+ ++SS Y  +    ++ + S++WH RLGH++  ++  +   G++  +   DF +C  C
Sbjct: 278  NETLHSSNYGIK-RKLMNENSSMLWHKRLGHISNQQIQRLVLEGILDPLDFSDFQVCIEC 336

Query: 422  VMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISK 243
            + GK +      A R +D+L++IH+DICGP    +  G  YFITF DDYSR+GY+YLI++
Sbjct: 337  IKGKQTNMRKKNANRCSDVLELIHTDICGPFPTPSWNGQQYFITFIDDYSRYGYLYLINE 396

Query: 242  KSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEI----------FGDFCKNHGIIH 93
            KS +LD+F ++K EVENQL  KIK +RSDRGGEY              F  +    GI+ 
Sbjct: 397  KSQSLDVFKNFKAEVENQLSKKIKAVRSDRGGEYYGRYDGSGEQRPGPFAKYLMECGIVP 456

Query: 92   QFTMPDTPQQNGVPERRNRTLLDMTRSMLS 3
            Q+TMP TP QNGV ERRNRTL DM RSM+S
Sbjct: 457  QYTMPGTPSQNGVAERRNRTLKDMVRSMIS 486



 Score = 31.6 bits (70), Expect(2) = 2e-58
 Identities = 26/99 (26%), Positives = 40/99 (40%)
 Frame = -1

Query: 1114 ITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRH 935
            ITC+  ++ GH    C +             + VC  SE  L    T+ WWID   ++ H
Sbjct: 112  ITCFFYKKAGHMKKTCTKYAAWREKKGTLL-NFVC--SEINLAVVPTDTWWIDTGATT-H 167

Query: 934  VEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 818
            +  +    +  +    GE  +Y+GN     V  I   RL
Sbjct: 168  ISVTMQGCLRSRMPIDGERYIYVGNGNKAAVKAIGLFRL 206


>emb|CAN83369.1| hypothetical protein VITISV_011463 [Vitis vinifera]
          Length = 1156

 Score =  213 bits (543), Expect(2) = 2e-56
 Identities = 109/264 (41%), Positives = 162/264 (61%), Gaps = 11/264 (4%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 600
            +  V P+ R+NL+S+ CLD  GY     +G VS+  + +++  G+  D +Y LN K+++ 
Sbjct: 320  ETFVVPSFRRNLISISCLDKFGYCCSFGNGMVSLYPNSKVIGTGSLTDKLYKLNIKATNG 379

Query: 599  NKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI-DFNICEPC 423
            N+ ++SS Y  +    ++ + S++WH RLGH++  ++  + S G++  +   DF +C  C
Sbjct: 380  NETLHSSNYGTK-RKLINKNSSMLWHKRLGHISNQRIQRLVSEGILDPLDFSDFQVCIEC 438

Query: 422  VMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISK 243
            + GK +        R +D+L++IH+DICGP    +  G  YFITF DDYS +GY+YLI +
Sbjct: 439  IKGKQTNMRKKDVNRCSDILELIHTDICGPFPTASWNGQQYFITFIDDYSHYGYLYLIHE 498

Query: 242  KSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEI----------FGDFCKNHGIIH 93
            KS +LD+F ++K EVENQL  KIKV+RSDRG EY              F  +    GI+ 
Sbjct: 499  KSQSLDVFKNFKAEVENQLSKKIKVVRSDRGSEYYGRYDGSGEQCPRPFAKYLMECGIVP 558

Query: 92   QFTMPDTPQQNGVPERRNRTLLDM 21
            Q+TMP TP QNGV ERRNRTL DM
Sbjct: 559  QYTMPGTPSQNGVVERRNRTLKDM 582



 Score = 35.8 bits (81), Expect(2) = 2e-56
 Identities = 27/99 (27%), Positives = 40/99 (40%)
 Frame = -1

Query: 1114 ITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRH 935
            ITC+ C++ GH    C +             + VC  SE  L    TN WWID   ++ H
Sbjct: 214  ITCFFCKKTGHMKKTCTK-YTAWREKKGTLLNFVC--SEINLAVVPTNTWWIDTGTTT-H 269

Query: 934  VEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 818
            +  +    +  +     E  +Y+GN     V  I   RL
Sbjct: 270  ISVTMQGCLRSRMSTDDERYIYVGNGNKVAVKAIGLFRL 308


>emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
          Length = 1356

 Score =  191 bits (484), Expect(2) = 3e-56
 Identities = 107/273 (39%), Positives = 161/273 (58%), Gaps = 14/273 (5%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMY---HLNQKS 609
            D    P+ R+NL+SV  LD  GY     + + ++  +   +  GT +  +Y   +L +  
Sbjct: 351  DTFXVPSFRRNLISVSVLDKSGYCCSFGNNKFTLSINSNAV--GTGLLNVYDNLYLLETV 408

Query: 608  SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI-DFNIC 432
              +N+ ++  +   +   + D S SL WH RLGH++K ++  + S G++  +   DF+IC
Sbjct: 409  PSYNETLHVESRGTKRKLNKDNSASL-WHKRLGHISKSRVERLVSDGILDSLDFSDFDIC 467

Query: 431  EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 252
              C+ GK ++     A R+ D+L++IH+DICGP    +  G  YFITF DDYSR+GY++L
Sbjct: 468  VECIKGKQTKTKKLGANRATDVLELIHTDICGPYPTASWNGQQYFITFIDDYSRYGYLFL 527

Query: 251  ISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEI----------FGDFCKNHG 102
            I +KS +LD+F ++K EVE QL  +IK +RSDRGGEY              F  + +  G
Sbjct: 528  IHEKSQSLDVFKTFKAEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQRPGPFAKYLEECG 587

Query: 101  IIHQFTMPDTPQQNGVPERRNRTLLDMTRSMLS 3
            I+ Q+TMP +P  NGV ERRNRTL DM RSM+S
Sbjct: 588  IVPQYTMPGSPSMNGVAERRNRTLKDMVRSMIS 620



 Score = 57.8 bits (138), Expect(2) = 3e-56
 Identities = 64/347 (18%), Positives = 132/347 (38%), Gaps = 7/347 (2%)
 Frame = -1

Query: 1837 MASKAVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRCY 1658
            +++ ++S  ++    LNG+NF  WK  +  +L    ++  + +P PDE +  +      Y
Sbjct: 5    ISTTSISANINNVPMLNGTNFKDWKENMMILLGCMDIDLALRMPKPDELNEXSTQEDEVY 64

Query: 1657 ERFLEDDKIDRSTMLT--FMDPDLEIIYEGYQITKV-----MFEAVTQSYGEQSKTYIQL 1499
                   K +RS  L+   M   +   + G    +V         + + + +  K     
Sbjct: 65   W-----GKWERSNRLSLMIMKRGIPEAFRGAVTDEVTNASDFLAEIXKRFAKNDKAETST 119

Query: 1498 LIGKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVA 1319
            L+    + + K   +V ++ + M+ +A  + A+   + D + V  +L SLP       V+
Sbjct: 120  LLASLISMKYKGKGNVREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPAQFNQFKVS 179

Query: 1318 INMSGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXX 1139
             N   +D   +   +   V+ + R K+ ++  +H+                         
Sbjct: 180  YNCQ-KDKWTLNELISFCVQEEERLKQDKTESAHLAS--TSKDKGKRKNKDNKVAASNGP 236

Query: 1138 XXXXXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWI 959
                    +TC+ C + GH    C +              +  V SE  L     N WW+
Sbjct: 237  EQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKKGMF---LTLVCSEVNLASVSRNTWWL 293

Query: 958  DYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 818
            D   ++ H+  S    ++ ++    E  +Y+G+    +V  I + RL
Sbjct: 294  DSGATT-HICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRL 339


>emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]
          Length = 1354

 Score =  188 bits (477), Expect(2) = 2e-55
 Identities = 106/273 (38%), Positives = 160/273 (58%), Gaps = 14/273 (5%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMY---HLNQKS 609
            D  + P+ RQNL+SV  LD  GY     + + ++  +   +  GT +  +Y   +L +  
Sbjct: 396  DTFIVPSFRQNLISVSVLDKSGYCCSFGNNKFTLSINSNAV--GTGLLNVYDNLYLLETV 453

Query: 608  SDFNKVVNSSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI-DFNIC 432
              +N+ ++  +   +   + D S SL WH RLGH++K ++  + S G++  +   DF+IC
Sbjct: 454  PSYNETLHVESRGTKRKLNKDNSASL-WHKRLGHISKSRVERLVSDGILDSLDFSDFDIC 512

Query: 431  EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 252
              C+ GK ++     A R+ D+L++IH+DI GP    +  G  YFITF DDYSR+GY++L
Sbjct: 513  VECIKGKQTKTKKLGANRATDVLELIHTDIXGPYPTASWNGQXYFITFIDDYSRYGYLFL 572

Query: 251  ISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEI----------FGDFCKNHG 102
            I +KS +LD+F ++K EVE QL  +IK +RSDRGGEY              F  + +  G
Sbjct: 573  IHEKSQSLDVFKTFKXEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQHPGPFAKYLEECG 632

Query: 101  IIHQFTMPDTPQQNGVPERRNRTLLDMTRSMLS 3
            I+ Q+TMP +P  NGV ERRNR L DM RSM+S
Sbjct: 633  IVPQYTMPGSPSMNGVAERRNRILKDMVRSMIS 665



 Score = 57.4 bits (137), Expect(2) = 2e-55
 Identities = 66/351 (18%), Positives = 134/351 (38%), Gaps = 11/351 (3%)
 Frame = -1

Query: 1837 MASKAVSHELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRCY 1658
            +++ ++S  ++    LNG+NF  WK  +  +L    ++  + +P PDE +  +       
Sbjct: 50   ISTTSISANINNVPMLNGTNFKDWKENMMILLGCMDIDLALRMPKPDELNEQSTQ----- 104

Query: 1657 ERFLEDD----KIDRSTMLT--FMDPDLEIIYEGYQITKV-----MFEAVTQSYGEQSKT 1511
                EDD    K +RS  L+   M   +   + G    +V         + + + +  K 
Sbjct: 105  ----EDDVYWGKWERSNRLSLMIMKRGIPEAFRGAVTDEVTNASDFLAEIQKRFAKNDKA 160

Query: 1510 YIQLLIGKFNTTRMKEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLES 1331
                L+    + + K   +V ++ + M+ +A  + A+   + D + V  +L SLP     
Sbjct: 161  ETSTLLASLISMKYKGKGNVREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPAQFNQ 220

Query: 1330 VVVAINMSGRDVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXX 1151
              V+ N   +D   +   +   V+ + R K+ ++  +H+                     
Sbjct: 221  FKVSYNCQ-KDKWTLNELISFCVQEEERLKQDKTESAHLAS--TSKDKGKRKNKDNKVAA 277

Query: 1150 XXXXXXXXXXXNITCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTN 971
                        +TC+ C + GH    C +              +  V SE  L     N
Sbjct: 278  SNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKKGMF---LTLVCSEVNLASVSRN 334

Query: 970  AWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 818
             WW+D   ++ H+  S    ++ ++    E  +Y+G+    +V  I + RL
Sbjct: 335  TWWLDSGATT-HICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRL 384


>gb|AAD12997.1| gag-pol polyprotein [Zea mays]
          Length = 1406

 Score =  185 bits (470), Expect(2) = 1e-53
 Identities = 108/274 (39%), Positives = 159/274 (58%), Gaps = 15/274 (5%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 600
            DVL  P++R+NL+SV  LD++         +  ++   + +    + D +Y L+Q  SD 
Sbjct: 361  DVLYVPSLRRNLISVSRLDDQHIHCHFGDRQCVIQFDNKDVGLAIRRDMLYLLSQ--SDV 418

Query: 599  NKVVN-----SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLI-PRIKIDFN 438
              V++      ++   +   S   + S +WH RLGH+++ ++  +    ++ P    D  
Sbjct: 419  VNVLDIPENDPASSGRKRKRSDGETSSKLWHYRLGHISRGRIESLVKEQILHPLDFTDLE 478

Query: 437  ICEPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYV 258
             C  C+ GK +++    A  S  +L+IIH+DICGP  V+T  G   FITFTDDYSR+GY+
Sbjct: 479  QCRGCIKGKFAKQIKKDAKHSTRVLEIIHTDICGPFPVRTVDGFNSFITFTDDYSRYGYI 538

Query: 257  YLISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSE---------IFGDFCKNH 105
            Y I ++S ALD F  +K EVENQ  +KIK++RSDRGGEY             F  F + +
Sbjct: 539  YPIKERSEALDKFKQFKAEVENQHDLKIKIVRSDRGGEYYGRHTEYGQVPGPFARFLREN 598

Query: 104  GIIHQFTMPDTPQQNGVPERRNRTLLDMTRSMLS 3
            GI+ Q++ P  PQQNGV ERRNRTL+DM RSMLS
Sbjct: 599  GIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMLS 632



 Score = 54.3 bits (129), Expect(2) = 1e-53
 Identities = 72/351 (20%), Positives = 131/351 (37%), Gaps = 19/351 (5%)
 Frame = -1

Query: 1813 ELSKTECLNGSNFSTWKRRIRHILFHEKVEYVIDVPIPDEPDNPNPAVGRCYERFLEDD- 1637
            ++++ + L+GSN+ +W+  I  I    +++Y +    P EP    P     + ++  D  
Sbjct: 5    QIAQMKPLDGSNYHSWREDIDMITTVGEIDYALRFDKPVEPTVGTPNYDHRWMQYSIDKV 64

Query: 1636 KIDRST------MLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTT 1475
            K +RS       +   +   L+      +  K   E V   +   SK Y   L+ +F   
Sbjct: 65   KWERSNDKCMIILKRSIKEPLKSSIPECETAKEYLERVASHHQGSSKAYACSLMTEFVNA 124

Query: 1474 RM--KEIESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGR 1301
            +     +   +   I  +++AK    +G+P+ +   V  ++ SLP+  E+  +  N S  
Sbjct: 125  KYDGNGVRPFIQKMI--SIVAKINKYLGSPLHEEFVVFMIMKSLPKEFETFHIQYNTSVT 182

Query: 1300 DVNMITLPMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXX 1121
            D   I   +   V+ + R K+   S + +   V                           
Sbjct: 183  DKWNIDQLLAQCVQEEERLKQTGDSVNLIKGNVPRQNKNSKKKFKKQGKQNNQASSSNNN 242

Query: 1120 XNI----------TCYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTN 971
                         TC  C++ GHY   CPE            KD V  V+ESL  +  + 
Sbjct: 243  QPRQGGGFSVPPDTCLYCKKTGHYKRKCPE---FLQYLLESGKDQVTFVNESLYLEYPSY 299

Query: 970  AWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRL 818
            +WWID   ++ HV  S       + +  G   + + N     V  I ++ L
Sbjct: 300  SWWID-SSATVHVANSLQGLRTSQRLPKGRRTIRVANGVEAAVEAIGDIHL 349


>gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
          Length = 1292

 Score =  187 bits (475), Expect(2) = 3e-53
 Identities = 111/257 (43%), Positives = 150/257 (58%), Gaps = 3/257 (1%)
 Frame = -3

Query: 764  PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 585
            P++++NLVS   L   GY+V + S +  V KHG  +  G    G++ L+      NK+VN
Sbjct: 379  PSIKKNLVSASMLCRDGYKVVLESNKCVVSKHGTFVGKGYDCGGLFRLSLHDV-CNKLVN 437

Query: 584  SSAYFYECSNSLDFSD-SLMWHMRLGHVNKDKLSCMSSSGLIPRIK-IDFNICEPCVMGK 411
            S          + FSD S +WH R  H +   L  +++  LIP+   +  + C  CV  K
Sbjct: 438  S----------VHFSDESDLWHSRFCHASFGCLMRLANINLIPKFNLVKKSKCHVCVESK 487

Query: 410  MSRKPFGKA-IRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSY 234
              RKP   A  RS   L+++HSD+C    + T  G  YF+TF DD +RF YVYL+  K  
Sbjct: 488  QPRKPHKAAEARSLAPLELVHSDLCEMNGILTKGGKRYFLTFIDDSTRFCYVYLLKTKDE 547

Query: 233  ALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPDTPQQNGV 54
            A + F +YK EVENQL  KIK LRSDRGGEY S +F +FC  HGIIH+ T P +PQ NG+
Sbjct: 548  AFNYFKAYKAEVENQLERKIKRLRSDRGGEYFSNVFDEFCVEHGIIHERTPPFSPQSNGI 607

Query: 53   PERRNRTLLDMTRSMLS 3
             ER+NRTL D+  +MLS
Sbjct: 608  AERKNRTLTDLVNAMLS 624



 Score = 51.2 bits (121), Expect(2) = 3e-53
 Identities = 68/358 (18%), Positives = 123/358 (34%), Gaps = 27/358 (7%)
 Frame = -1

Query: 1804 KTECLNGSNFSTWKRRIRHIL-----FHEKVEYVIDVPIPDEPDNPNPAVGRCYERFLED 1640
            K +  +G NF  WK ++   L     FH       ++P  DE             +F  +
Sbjct: 25   KPDPFDGKNFLIWKAKMELWLTAMSCFHAAEGKPANLPPEDEA------------KFKAE 72

Query: 1639 DKIDRSTMLTFMDPDLEIIYEGYQITKVMFEAVTQSYGEQSKTYIQLLIGKFNTTRMKEI 1460
            D + R  +++ +D   +  Y      K +++A+   +G         L+ +    +M E 
Sbjct: 73   DNLFRGAVISALDTKFQKSYIILPTGKELWDALVGKFGVTDAGSELYLMEQLYDYKMVEN 132

Query: 1459 ESVVDHCIRMTMIAK*IAAVGNPIPDRMQVSNLLHSLPRSLESVVVAINMSGRDVNMITL 1280
             SVV+       +AK +     P+PD+     ++  LP S +    ++    ++ N+  L
Sbjct: 133  RSVVEQAHEFQALAKELELFPCPLPDKFVAGGIIAKLPPSWKDFATSLKHKRQEFNVEEL 192

Query: 1279 PMLLGVEAQRREKRGESSPSHVTEEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXNIT--- 1109
               L VE + R K         T  V                                  
Sbjct: 193  IGTLDVEERARTKDSGKGVETSTANVVQKRNFRKFNKKKNQNKQENANKPVHTAQFKKKN 252

Query: 1108 --------CYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSES-----------LLD 986
                    C+ C    H+   CP+             ++V   +E            +L 
Sbjct: 253  NNNKGKGGCFVCGSDQHWARECPD---RKFTQDKKSANVVTTETEEGTSGYGNSLPFVLS 309

Query: 985  DCDTNAWWIDYYVSSRHVEKSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLSF 812
             C++  WW+D   ++ HV      F + +  ++G   + MGN +   VLG+  V L F
Sbjct: 310  VCNSPEWWMD-SGANIHVCADASMFTSYQVGRSG--ALLMGNGSRAHVLGVGTVILKF 364


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  214 bits (545), Expect = 2e-52
 Identities = 109/256 (42%), Positives = 160/256 (62%), Gaps = 2/256 (0%)
 Frame = -3

Query: 764 PNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDFNKVVN 585
           P + +N++SV CLD +G+   I++   S  +           +G++ LNQ    +N  + 
Sbjct: 12  PAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQSMPIYN--IR 69

Query: 584 SSAYFYECSNSLDFSDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKID-FNICEPCVMGKM 408
           +  +      S D + + +WH RLGH+N+  +  + S GL+     + +  CE C++GKM
Sbjct: 70  TKKF-----KSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKM 124

Query: 407 SRKPF-GKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYLISKKSYA 231
           ++ PF G + R++DLL +IH+D+CGP++        YFITFTDD+SR+GYVYL+  KS +
Sbjct: 125 TKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKS 184

Query: 230 LDIFISYKNEVENQLGIKIKVLRSDRGGEYNSEIFGDFCKNHGIIHQFTMPDTPQQNGVP 51
            + F  ++NEV+NQ G  IK LRSDRGGEY S++F D  +  GI+ Q T P TPQ NGV 
Sbjct: 185 FENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVS 244

Query: 50  ERRNRTLLDMTRSMLS 3
           ERRNRTLLDM RSM+S
Sbjct: 245 ERRNRTLLDMVRSMMS 260


>gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1407

 Score =  188 bits (478), Expect(2) = 2e-52
 Identities = 110/272 (40%), Positives = 155/272 (56%), Gaps = 13/272 (4%)
 Frame = -3

Query: 779  DVLVAPNMRQNLVSVPCLDNKGYEVRIRSGEVSVRKHGRILF*GTKVDGMYHLNQKSSDF 600
            DVL  P+M++NLVSV  LDN GY     +    +    + +      + +Y ++   + +
Sbjct: 381  DVLYVPSMKRNLVSVSRLDNDGYYCTFGNNRCIIMHDNKEVGLAVGWEQLYQISVCDATY 440

Query: 599  NKVVNSSAYFYECSNSLDF-SDSLMWHMRLGHVNKDKLSCMSSSGLIPRIKI---DFNIC 432
            N   +S+A         D  + S +WH RLGH+++ ++  +    ++  +     D + C
Sbjct: 441  NVDSSSNANISTKQKHNDNETSSKLWHYRLGHISRGRIERLIKENILYPLDFSDADIDHC 500

Query: 431  EPCVMGKMSRKPFGKAIRSNDLLDIIHSDICGPLNVKTHRGMTYFITFTDDYSRFGYVYL 252
              C+ GK S++    A RS  +L+IIH+DICGP N K+  G   FITFTDDYSR+GY+Y 
Sbjct: 501  IDCIKGKYSKQIKKGANRSMGILEIIHTDICGPFNEKSVDGFDSFITFTDDYSRYGYIYP 560

Query: 251  ISKKSYALDIFISYKNEVENQLGIKIKVLRSDRGGEYNSE---------IFGDFCKNHGI 99
            I ++S ALD F  +K EVENQ   KIK++RSDRGGEY             F  F +  GI
Sbjct: 561  IKERSEALDKFKIFKAEVENQHDRKIKIVRSDRGGEYYGRHTTYGQIPGPFARFLQESGI 620

Query: 98   IHQFTMPDTPQQNGVPERRNRTLLDMTRSMLS 3
              Q++ P  PQQNGV ERRNRTL+DM RSMLS
Sbjct: 621  KAQYSAPGEPQQNGVAERRNRTLMDMVRSMLS 652



 Score = 47.4 bits (111), Expect(2) = 2e-52
 Identities = 31/98 (31%), Positives = 44/98 (44%)
 Frame = -1

Query: 1108 CYQCRQKGHY*SNCPEXXXXXXXXXXXXKDIVCVVSESLLDDCDTNAWWIDYYVSSRHVE 929
            CY C + GH   +C               DI+  V ESL  D  TN+WWID   ++ HV 
Sbjct: 277  CYFCGKSGHRQKDC---IGFMRWLSKKGTDIISFVDESLNIDYATNSWWID-SGATFHVA 332

Query: 928  KSRDCFVNIKEIKTGEHRVYMGNNTYCDVLGIRNVRLS 815
             S   F   + +K GE R+ + N    +V  I +  L+
Sbjct: 333  NSLQGFAMRRTLKRGERRIRVANGVETEVEAIGDFTLT 370