BLASTX nr result
ID: Papaver27_contig00041286
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00041286
(920 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 126 1e-26
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript... 108 2e-21
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 106 1e-20
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 106 1e-20
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204... 105 2e-20
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 105 3e-20
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 103 7e-20
gb|ABK28243.1| unknown [Arabidopsis thaliana] 103 7e-20
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 103 7e-20
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 103 1e-19
ref|NP_174632.1| RNA-directed DNA polymerase (reverse transcript... 102 3e-19
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 101 4e-19
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 100 1e-18
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part... 99 2e-18
ref|XP_004253231.1| PREDICTED: uncharacterized protein LOC101248... 97 9e-18
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 97 1e-17
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript... 96 3e-17
ref|XP_004253305.1| PREDICTED: uncharacterized protein LOC101257... 95 4e-17
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 95 4e-17
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa Japonica Group] 94 8e-17
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 126 bits (316), Expect = 1e-26
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 8/250 (3%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSLSPN-----LVNVLGSIGSDV 754
D W G LL L P +++ V L +D W +S + ++ +L +
Sbjct: 884 DNWTDHGPLLHLTGPAGPLLAGLPLNSVVRDALRDDTWRISSSRSRNPVITLLQRVLPSA 943
Query: 753 MSVKTDHFFEDRVVWTA---SKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFI 583
S+ D +D +W + S ++ DT++ ++P S + WH VWF + +P+Q FI
Sbjct: 944 ASL-IDCPHDDTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFI 1002
Query: 582 SWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLR 403
W+ H L TR +L WG S+ P C LCN + E HL F+C ++ +WS M L L
Sbjct: 1003 CWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSEIWSFFMRALNLN 1062
Query: 402 CVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLLQ 223
+ + W + R D + I KL +A +Y IW ERN RI + P H++++
Sbjct: 1063 --PPPQFMHCLLWTLTASR-DRNITLITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIK 1119
Query: 222 RIREDVRLKL 193
I+ VR +L
Sbjct: 1120 EIQLIVRARL 1129
>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 323
Score = 108 bits (271), Expect = 2e-21
Identities = 71/271 (26%), Positives = 118/271 (43%), Gaps = 9/271 (3%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSLS------PNLVNVLGSIGSD 757
D W QG L+ L + ++A V L D W LS P++ + + S
Sbjct: 52 DNWTGQGPLIDLTGTNGPRSVGMPLNAVVRDALRGDNWWLSSSRSRNPSIALLKSVLPSS 111
Query: 756 VMSVKTDHFFEDRVVWTA---SKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCF 586
++ H +D W + S ++ T+ A+ P W VWF + IP+ F
Sbjct: 112 ESMIECQH--DDVYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAF 169
Query: 585 ISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGL 406
I W+A + L TR +L WG+++ VC LCN++ E HL F+C ++ +WS MI G+
Sbjct: 170 ICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIRAGM 229
Query: 405 RCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLL 226
+ I + + I KL A +Y IW ERN RI T + ++
Sbjct: 230 ---TPPHLFGPILLWLKSASSSKNLSLIIKLLFQASVYLIWRERNCRIHTTHSRTPPTII 286
Query: 225 QRIREDVRLKLVSVDAQMEENIQNRVLSLRW 133
+ +++ +R +L + + + L W
Sbjct: 287 KEVQQLIRARLDPICRERPVGLSRSSLLATW 317
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 106 bits (265), Expect = 1e-20
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 4/216 (1%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSL-SPNLVNVLGSIGS-DVMSV 745
D W P G LL+ + + + V+ + + W L SP N L +S+
Sbjct: 224 DSWTPFGPLLTFIGSDGPRNQRIPLCSKVADVVNGNRWLLPSPRSSNALNLHAFLTTLSI 283
Query: 744 KTDHFFEDRVVWTASKSGD--YTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISWIA 571
ED +W D ++ T+NA+R K W S VWF P+ F WI
Sbjct: 284 PLQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEVEKPWVSSVWFKGVTPKNAFNMWIT 343
Query: 570 LHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCVSH 391
L+T+ ++++WG V PVCALC + E HL+ C ++V+VW+ + +G
Sbjct: 344 HQDRLRTKLRMIAWGFLVSPVCALCQVGFETRDHLMLSCDFSVSVWALVRQRIGTPLTIF 403
Query: 390 SDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIW 283
+W I W R ++ T+RKL A +Y +W
Sbjct: 404 QNWSELILW--TQNRSKAAPSTLRKLVAQAVVYALW 437
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 106 bits (264), Expect = 1e-20
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 10/255 (3%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSLSPNLVNVLGSIGSDVMSVKT 739
D W P G L+++ D I ATV+ L + + + L + + + ++T
Sbjct: 178 DNWSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRR---RRHRADHLNQMEAQLEELRT 234
Query: 738 DHFFE--DRVVWTASKSG----DYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISW 577
E D V+W K G ++ K+T+ R EW+ +WFS+ P+ FI+W
Sbjct: 235 KGLVETEDVVLWKG-KGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATPKYSFITW 293
Query: 576 IALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCV 397
+A L T +++SW V+ C C E HL F C Y+ VWS L L R
Sbjct: 294 LATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKLLTRHY 353
Query: 396 SHSDWESQIQWCVIHLRGDSSTGTIR----KLSLNAYIYHIWVERNRRIFTQKALPTHVL 229
S +DW + ++ L D + G R + + +Y IW ERN R ++ LP+ +L
Sbjct: 354 S-TDWTT-----ILKLLTDKTLGNNRLFLLRYAFQILVYSIWKERNSRRHGEEPLPSALL 407
Query: 228 LQRIREDVRLKLVSV 184
L+R+ ++VR KL ++
Sbjct: 408 LKRLDKEVRNKLSTI 422
>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
Length = 282
Score = 105 bits (263), Expect = 2e-20
Identities = 68/240 (28%), Positives = 101/240 (42%), Gaps = 2/240 (0%)
Frame = -3
Query: 900 GNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSLSPNLVNVLGSIGSDVMSVKTDHFFED 721
G ++ F YD DA + + D P + L I V V+ ED
Sbjct: 37 GPIIQQFGERVIYDAGSRWDARLVDFMGRDGDWRWPLVYLDLMDIWDRVQGVRLSPSVED 96
Query: 720 RVVWTASKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISWIALHRGLKTRFK 541
R VW +++ + IRPHS W L+W IP+ F +W+A+ L TR +
Sbjct: 97 RWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLGTRGR 156
Query: 540 LLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCVSHSD--WESQIQ 367
L W S+ C LC E HL F C + +WS +++ L+ SH W ++
Sbjct: 157 LSRWDRSIPLSCLLCGGNYESRDHLFFSCHFGWEIWSRILL---LKSSSHRTGYWGVELS 213
Query: 366 WCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLLQRIREDVRLKLVS 187
W G S + +L A IY IW ERN R+ V+ Q IR ++++ S
Sbjct: 214 WIYNQGIGKSVRRKLWRLLWCATIYFIWQERNHRLHGGSIREPLVVFQLIRSCIKVRAAS 273
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 105 bits (262), Expect = 3e-20
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 3/194 (1%)
Frame = -3
Query: 756 VMSVKTDHFFEDRVVWTASKS---GDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCF 586
++S + + EDR +W ++ ++ KDT+N IR S+ W+ VWF+ IP+ F
Sbjct: 261 ILSWNSRNQAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAF 320
Query: 585 ISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGL 406
W+A+H L T ++ W M VD C LCN LE HL F C +A +W L +
Sbjct: 321 CMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYN 380
Query: 405 RCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLL 226
C ++DW++ I V D G + + L IY +W ERN R + L+
Sbjct: 381 TCF-YTDWQTIIN-NVSRNWPDRIAGFLARCILQVTIYTLWRERNERKHGASPNSSSRLI 438
Query: 225 QRIREDVRLKLVSV 184
I + +R L+++
Sbjct: 439 SWIDKHIRNHLMAI 452
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 103 bits (258), Expect = 7e-20
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 9/251 (3%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAW------SLSPNLVNVLGSIGSD 757
D W+ G L+ + P IDA V L +W S +P +V + +
Sbjct: 27 DNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPIIVQLKNLLPEA 86
Query: 756 VMSVKTDHFFEDRVVWTA---SKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCF 586
+ H +D +W + S ++ T++A+ P S T WH VWF N +P+ F
Sbjct: 87 QGLLDCQH--DDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAF 144
Query: 585 ISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGL 406
I W+ L TR +L +WG+S+ C LCN + HL F+C ++ VW L
Sbjct: 145 ICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNL 204
Query: 405 RCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLL 226
+ + W + R + + I +L+ ++ +Y IW ERN+R+ + + T +L
Sbjct: 205 N--PPAQLMDCLNWLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESIL 261
Query: 225 QRIREDVRLKL 193
+ I+ +R +L
Sbjct: 262 KDIQLIIRARL 272
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 103 bits (258), Expect = 7e-20
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 9/251 (3%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAW------SLSPNLVNVLGSIGSD 757
D W+ G L+ + P IDA V L +W S +P +V + +
Sbjct: 27 DNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPIIVQLKNLLPEA 86
Query: 756 VMSVKTDHFFEDRVVWTA---SKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCF 586
+ H +D +W + S ++ T++A+ P S T WH VWF N +P+ F
Sbjct: 87 QGLLDCQH--DDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAF 144
Query: 585 ISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGL 406
I W+ L TR +L +WG+S+ C LCN + HL F+C ++ VW L
Sbjct: 145 ICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNL 204
Query: 405 RCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLL 226
+ + W + R + + I +L+ ++ +Y IW ERN+R+ + + T +L
Sbjct: 205 N--PPAQLMDCLNWLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESIL 261
Query: 225 QRIREDVRLKL 193
+ I+ +R +L
Sbjct: 262 KDIQLIIRARL 272
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 103 bits (258), Expect = 7e-20
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 9/251 (3%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAW------SLSPNLVNVLGSIGSD 757
D W+ G L+ + P IDA V L +W S +P +V + +
Sbjct: 27 DNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPIIVQLKNLLPEA 86
Query: 756 VMSVKTDHFFEDRVVWTA---SKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCF 586
+ H +D +W + S ++ T++A+ P S T WH VWF N +P+ F
Sbjct: 87 QGLLDCQH--DDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAF 144
Query: 585 ISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGL 406
I W+ L TR +L +WG+S+ C LCN + HL F+C ++ VW L
Sbjct: 145 ICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNL 204
Query: 405 RCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLL 226
+ + W + R + + I +L+ ++ +Y IW ERN+R+ + + T +L
Sbjct: 205 N--PPAQLMDCLNWLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESIL 261
Query: 225 QRIREDVRLKL 193
+ I+ +R +L
Sbjct: 262 KDIQLIIRARL 272
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 103 bits (257), Expect = 1e-19
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Frame = -3
Query: 846 IDATVSSCLLNDAWSLSPNLVNVLGSIGSDVMSVKTDHF------FEDRVVWTA---SKS 694
+ + V++ +D W+ L++++G +G + + D +D +W + S
Sbjct: 71 VGSGVTAKFWHDNWTGHGPLIDLVGPLGPQTVGLPIDAVGLIDCQHDDSFIWKTDLHAPS 130
Query: 693 GDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISWIALHRGLKTRFKLLSWGMSVD 514
++ T A+ P + W+ VWF N +P+ FI W+ L TR +L SWG+S+
Sbjct: 131 NIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIP 190
Query: 513 PVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCVSHSDWESQIQWCVIHLRG--- 343
VC LCN E HL F+C + VW L +Q+ +C+I L
Sbjct: 191 AVCLLCNSHDESRAHLFFECPFCGAVWRFFTGRANLFP------PAQLMYCLIWLLNPSR 244
Query: 342 DSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLLQRIREDVRLKL 193
D +T I +L+ AY+Y IW ERN + T A +L+ I+ +R +L
Sbjct: 245 DKNTTLIIRLAFQAYVYAIWRERNLCLHTGVARVFDSVLKDIQLTIRARL 294
>ref|NP_174632.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193496|gb|AEE31617.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 210
Score = 102 bits (253), Expect = 3e-19
Identities = 57/192 (29%), Positives = 92/192 (47%)
Frame = -3
Query: 777 LGSIGSDVMSVKTDHFFEDRVVWTASKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIP 598
+GS D+ ++ + D VV +G + K T+ A+RP SD W VWF P
Sbjct: 1 MGSFSIDLPTLSGELDVYDWVVEDKLCNGFSSAK-TWAALRPRSDVVSWAKTVWFKGATP 59
Query: 597 RQCFISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMI 418
+ F W+ L T+ +L SWGM + C LC+L +ED HL C +A +W + +
Sbjct: 60 KHAFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSV 119
Query: 417 LLGLRCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPT 238
L L S W + W + R S T+RKL + + +Y IW +RN + + +
Sbjct: 120 RLELPAFSFVVWNDLMDWTL--QRNRRSPPTLRKLIVQSVLYAIWKQRNNFLHNHETILP 177
Query: 237 HVLLQRIREDVR 202
V+ + I +++
Sbjct: 178 SVVFKTIDREIK 189
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 101 bits (252), Expect = 4e-19
Identities = 69/278 (24%), Positives = 134/278 (48%), Gaps = 15/278 (5%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCL-LNDAWSL---SPNLVNVLGSIGSDVM 751
D W +G L++L ID +S + L +AWS + V +L +++
Sbjct: 680 DNWSEKGPLINLT------GARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEF-EEIL 732
Query: 750 SVKTDHF---FEDRVVWTASKS---GDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQC 589
K H ED ++W + ++ KDT+N IR S+ + WH VWF++ P+
Sbjct: 733 LQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFS 792
Query: 588 FISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLG 409
F +W+A+ L T ++++W C C+ +E HL F+CCY+ +W+ + +
Sbjct: 793 FCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVY 852
Query: 408 LRCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVL 229
S + W + + + + + D + + + I+ IW ERN R +K+ L
Sbjct: 853 KDRFS-TKWSAVVNY-ISDSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSASNL 910
Query: 228 LQRIREDVRLKLVSV----DAQMEENIQNRVL-SLRWN 130
+++I + +R +L ++ D ++E+ +Q +L S+R++
Sbjct: 911 IRQIDKTIRNQLSTIKKKGDLRLEKGLQTLILDSIRFD 948
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 99.8 bits (247), Expect = 1e-18
Identities = 81/282 (28%), Positives = 119/282 (42%), Gaps = 11/282 (3%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSL----SPNLVNVLGSIGSDVM 751
D W G LL+ DA V N W L S N L ++ +
Sbjct: 27 DAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAARSDNSQLFLAAL--TMA 84
Query: 750 SVKTDHFFEDRVVW---TASKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFIS 580
V + +D +W S ++ +DT+ IR HS T W +VWF IPR I+
Sbjct: 85 PVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLIT 144
Query: 579 WIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVW----SELMILL 412
W++ L TR +L WGM++ LC+ E HL F+C +++ +W S+
Sbjct: 145 WMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSP 204
Query: 411 GLRCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHV 232
+ S W ++ L S + TI KL L + +YH+W ERN RIFT +
Sbjct: 205 PFGLPAASSW-------ILQLPLRSHSTTILKLLLQSAVYHVWKERNARIFTSISSSASS 257
Query: 231 LLQRIREDVRLKLVSVDAQMEENIQNRVLSLRWNYSPKFYYP 106
L I +R +L+S + R SL Y +F YP
Sbjct: 258 LRLAIDRTMRNRLLSF-----PSADLRSPSLLQFYFSRFSYP 294
>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
gi|482569649|gb|EOA33837.1| hypothetical protein
CARUB_v10021318mg, partial [Capsella rubella]
Length = 290
Score = 99.0 bits (245), Expect = 2e-18
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 3/196 (1%)
Frame = -3
Query: 759 DVMSVKTDHFFEDRVVWTASKS---GDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQC 589
+++S+++D F +W S + G ++ T+ + P W VWF IP+
Sbjct: 73 NMLSLESDFF-----LWRNSPNEPPGVFSTSKTWISTHPAGPLVPWFKSVWFKERIPKHA 127
Query: 588 FISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLG 409
FISW+ + L TR +L WGM+V C LC E HL F+C Y+ VWS
Sbjct: 128 FISWVVIRNRLTTRDRLRGWGMNVPSECLLCTSSAESRLHLFFECAYSHEVWSSFFTHPS 187
Query: 408 LRCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVL 229
L + +E + W + TI KL A +Y +W ERN R+ T ++
Sbjct: 188 LS--PPAMFEDIVAW--VRSSRSKKLRTICKLIFQAVVYGLWRERNSRLHTSSFKSPAII 243
Query: 228 LQRIREDVRLKLVSVD 181
++ I+ +R KL +D
Sbjct: 244 IKEIQLVMRAKLAGLD 259
>ref|XP_004253231.1| PREDICTED: uncharacterized protein LOC101248660 [Solanum
lycopersicum]
Length = 187
Score = 97.1 bits (240), Expect = 9e-18
Identities = 48/161 (29%), Positives = 81/161 (50%)
Frame = -3
Query: 699 KSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISWIALHRGLKTRFKLLSWGMS 520
+ G +K Y+ ++ EW L++ + P+ CF WI ++R L T +L WGM
Sbjct: 13 RQGKGVIKHIYDYLKGEKIKPEWRCLLFKNPARPKACFTLWILMNRKLATVDRLTKWGMI 72
Query: 519 VDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCVSHSDWESQIQWCVIHLRGD 340
+D C +C E HL C YA +W L+ + ++ W IQWCV + +G
Sbjct: 73 LDRGCVMCKRAEESMEHLFIHCHYAEAIWERLLRWINVQINMPKSWTDFIQWCVKNGKGK 132
Query: 339 SSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLLQRI 217
++ + K L +Y +W +RN+RIF +K+ +++RI
Sbjct: 133 TARAQMFKGILAEGVYGLWSKRNKRIFEEKSSLIDEVVKRI 173
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 96.7 bits (239), Expect = 1e-17
Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 6/245 (2%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSL-SPNLVNV-LGSIGSDVMS- 748
D W G L+ T H A V+ + W L S N L ++ S +++
Sbjct: 950 DHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNS 1009
Query: 747 -VKTDHFFEDRVVW--TASKSGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISW 577
+ ED W S S ++ K T+ +R TK W + VW+ CIP+ F W
Sbjct: 1010 PAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFW 1069
Query: 576 IALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCV 397
+A L R + W + +C +C E HL C +W +++ G R
Sbjct: 1070 VAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFG-RSQ 1128
Query: 396 SHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLLQRI 217
+W+ I+W + + S +GT++KL++ I+HIW ERN R+ + + + ++I
Sbjct: 1129 MFREWKDIIEWMLSN--QGSFSGTLKKLAVQTAIFHIWKERNSRLHSAMSASHTAIFKQI 1186
Query: 216 REDVR 202
+R
Sbjct: 1187 DRSIR 1191
>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 289
Score = 95.5 bits (236), Expect = 3e-17
Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 4/243 (1%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSLSPNLVNVLGSIGSDVMSVKT 739
D W G L+ + + + ++A V L + W L + +I + ++ T
Sbjct: 28 DSWTSLGPLIKVMGDYGSRSLRIPLNARVVEALGVNGWKLPLSRSAPAQAIHDHISTITT 87
Query: 738 DH--FFEDRVVWTASK--SGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISWIA 571
ED W ++ T++AIRP + +W VWF +P+ F WI+
Sbjct: 88 PSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWIS 147
Query: 570 LHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCVSH 391
L TR +L SWG C LC + E HLLF C +A VW L R
Sbjct: 148 QLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLF 207
Query: 390 SDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERNRRIFTQKALPTHVLLQRIRE 211
W + W + S+ +RK+S +A IY+IW +RN + + ++ + +
Sbjct: 208 CSWAELLSW--MRSSSSSAPSLLRKVSAHAIIYNIWRQRNNVLHNNLRIAPIIIFKIVDR 265
Query: 210 DVR 202
++R
Sbjct: 266 EIR 268
>ref|XP_004253305.1| PREDICTED: uncharacterized protein LOC101257253 [Solanum
lycopersicum]
Length = 162
Score = 94.7 bits (234), Expect = 4e-17
Identities = 45/139 (32%), Positives = 73/139 (52%)
Frame = -3
Query: 633 WHSLVWFSNCIPRQCFISWIALHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKC 454
W L++ + P+ CF WI L++ L T +L WG+ V+ +C +C E L +C
Sbjct: 10 WTCLMFNNAARPKACFTMWIMLNQRLLTVDRLAHWGIEVEKICVMCKNEEETAEDLFIQC 69
Query: 453 CYAVTVWSELMILLGLRCVSHSDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVER 274
YA +W L+ + + + WE +QWC++H +G + + K L IY +W+ER
Sbjct: 70 NYARRIWERLLSSIERQTEAPMTWEQFVQWCIMHGKGKRAATQLFKFILAEGIYGLWMER 129
Query: 273 NRRIFTQKALPTHVLLQRI 217
N RIF QK+ L++ I
Sbjct: 130 NNRIFDQKSRNEEQLVKEI 148
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 94.7 bits (234), Expect = 4e-17
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 4/220 (1%)
Frame = -3
Query: 918 DRWLPQGNLLSLFPPHFTYDTEHHIDATVSSCLLNDAWSLSPNLVNVLGSIGSDVMSVKT 739
D W P G L LF I A V+ + W +SP + ++ + ++
Sbjct: 823 DNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHLTTIAL 882
Query: 738 DHFFE--DRVVWTASK--SGDYTLKDTYNAIRPHSDTKEWHSLVWFSNCIPRQCFISWIA 571
F D VW ++ T+ A+RP K+W VWF +P+ F W++
Sbjct: 883 PCFDSSPDTFVWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVS 942
Query: 570 LHRGLKTRFKLLSWGMSVDPVCALCNLMLEDDFHLLFKCCYAVTVWSELMILLGLRCVSH 391
L TR +L +WG++ C LC+ E HLL C ++ +W + L
Sbjct: 943 HLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPSQAIF 1002
Query: 390 SDWESQIQWCVIHLRGDSSTGTIRKLSLNAYIYHIWVERN 271
+ W + W + + +RK++ A ++H+W +RN
Sbjct: 1003 NSWAELLSW--TRINSSKAPSLLRKIAAQASVFHLWKQRN 1040
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa Japonica Group]
Length = 1189
Score = 94.0 bits (232), Expect = 8e-17
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 6/238 (2%)
Frame = -3
Query: 843 DATVSSCLLNDAWSLSPNLVNVLGSIGSDVMSVKTDHFFEDRVVWTASKSGDYTLKDTYN 664
D+ V L+ S++ NL++ L + V +V D D++VW + SG YT Y+
Sbjct: 955 DSWVHDLTLDAGLSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYH 1014
Query: 663 AIRPHSDTKEWHSLVWFSNCIPRQC-FISWIALHRGLKTRFKLLSWGMSVDPVCALCNLM 487
A + ++SL+W P +C F +W+ + + T +L + G + C LC
Sbjct: 1015 AQCLGAPNTNFNSLIW-KVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNNGHCPLCRCD 1073
Query: 486 LEDDFHLLFKCCYAVTVWSELMILLGLRCVSHSDWE---SQIQW--CVIHLRGDSSTGTI 322
E FHL+ C Y +W + G + + + WE S QW + + G G +
Sbjct: 1074 TETAFHLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQWWESLANTPGIPKKG-L 1132
Query: 321 RKLSLNAYIYHIWVERNRRIFTQKALPTHVLLQRIREDVRLKLVSVDAQMEENIQNRV 148
R L L ++ IW ERNRRIF K + T VLL +I+E+ L ++ ++ E I + V
Sbjct: 1133 RSLIL-LVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAKRLRELIPHSV 1189