BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00039238
         (1918 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    75   1e-36
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    70   4e-33
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...    64   5e-33
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...    64   6e-33
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...    64   5e-32
emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]     64   5e-32
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    79   7e-30
ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis...    61   3e-29
gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]    72   8e-29
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]    79   1e-28
dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]       58   2e-28
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...    69   4e-25
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    69   3e-24
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]    69   3e-23
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...    67   4e-23
ref|XP_007224014.1| hypothetical protein PRUPE_ppa015019mg, part...    66   5e-23
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...    70   1e-22
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       68   6e-22
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       68   6e-22
ref|XP_007224941.1| hypothetical protein PRUPE_ppa021500mg [Prun...    65   2e-21

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 74.7 bits (182), Expect(5) = 1e-36
 Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
 Frame = -1

Query: 799  LLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKVFV 620
            L+C  K D E FLS+MLQT   +KLLELRTKT IF +P  RSM+  +DE  TL YG+VFV
Sbjct: 679  LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF-IPNGRSMMGCLDETRTLNYGQVFV 737

Query: 619  QVSCLG-REQSVEIHTLCLMRMDQRTIT--LLYLERSALLKIRCCTLVICVLQAVDVPA 452
            Q+S  G R+   E       R  QR I   L+ + ++  L        + VL+AV+VPA
Sbjct: 738  QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH----PGDVRVLKAVNVPA 792



 Score = 49.3 bits (116), Expect(5) = 1e-36
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 795 HMVDCVVFPQKGMRPHPNECSGSDLDGD 822



 Score = 43.9 bits (102), Expect(5) = 1e-36
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            ED ++ HSTDL  R +++ +  RT +   ILS    G++I  +K+EFL FS+ QL+
Sbjct: 413  EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 468



 Score = 41.2 bits (95), Expect(5) = 1e-36
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F  IRN+AK+AARLGQSF+SS ETLS
Sbjct: 493  FREIRNVAKYAARLGQSFSSSKETLS 518



 Score = 33.5 bits (75), Expect(5) = 1e-36
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
 Frame = -3

Query: 1109 VASKGGLKSMPSAFFQNRYGGSSGF-----SES*KA*VNSRHR-----TPNLMF*NGASF 960
            VASK GLK  P + FQ RYGG  G      + S K  +    R        L     + +
Sbjct: 556  VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKY 615

Query: 959  SHFFVIVK**SF--CLGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
               F+  +  S    LGI D +FE +Q+ +       +T PL+A EAL ++S  E
Sbjct: 616  QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 670


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca
           subsp. vesca]
          Length = 1119

 Score = 69.7 bits (169), Expect(5) = 4e-33
 Identities = 39/69 (56%), Positives = 48/69 (69%)
 Frame = -1

Query: 799 LLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKVFV 620
           L+C  K + E FLS+MLQT   +KLLELRTKT IF +P  R+M+  +DE  TLEYG+VFV
Sbjct: 666 LMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIF-IPDGRAMMGCLDETRTLEYGQVFV 724

Query: 619 QVSCLGREQ 593
           Q S   R Q
Sbjct: 725 QFSGKRRRQ 733



 Score = 49.7 bits (117), Expect(5) = 4e-33
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSMSK+ S+NTKLDVL  SK+QP F NRQ++ LLS
Sbjct: 582  KSMSKYESENTKLDVLACSKYQPCFLNRQLITLLS 616



 Score = 49.3 bits (116), Expect(5) = 4e-33
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 780 HMVDCVVFPQKGHRPHPNECSGSDLDGD 807



 Score = 36.2 bits (82), Expect(5) = 4e-33
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDM 480
           D+ F++ GKV +AKNP LHPGD+
Sbjct: 745 DSCFIIEGKVVVAKNPCLHPGDV 767



 Score = 25.8 bits (55), Expect(5) = 4e-33
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAEA 798
           L + D+VF  +Q+ +       +T PL+A EAL ++S  E+
Sbjct: 618 LEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGES 658



 Score = 43.1 bits (100), Expect(2) = 8e-07
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F  IRN+AK+AARLGQSF SSTETLS
Sbjct: 480  FRQIRNVAKYAARLGQSFGSSTETLS 505



 Score = 38.9 bits (89), Expect(2) = 8e-07
 Identities = 22/56 (39%), Positives = 35/56 (62%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            E+ E+ +STDL  R +T     +T + + +LS    G+V+  KK+EFL FS+ QL+
Sbjct: 404  EEMEKLYSTDLSPRTST----RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLR 455


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score = 63.9 bits (154), Expect(5) = 5e-33
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = -1

Query: 799 LLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKVFV 620
           +LC  K D E FLS+MLQ    +KLLELRTKT IF +   RSM+  +DE  TLEYG+V V
Sbjct: 663 ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIF-ISGGRSMMGCLDETRTLEYGQVVV 721

Query: 619 QVS 611
           Q S
Sbjct: 722 QYS 724



 Score = 55.1 bits (131), Expect(5) = 5e-33
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSMSKF S+NTKLDVL WSK+QP + NRQ++ LLS
Sbjct: 579  KSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLS 613



 Score = 48.9 bits (115), Expect(5) = 5e-33
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 765 HMVDCVVFPQKGLRPHPNECSGSDLDGD 792



 Score = 33.1 bits (74), Expect(5) = 5e-33
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 539 FVVLGKVSIAKNPLLHPGDM 480
           F++ G V +AKNP LHPGD+
Sbjct: 733 FIITGPVVVAKNPCLHPGDV 752



 Score = 29.3 bits (64), Expect(5) = 5e-33
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LGI D VFE +Q+         +T PL A EALG+++  E
Sbjct: 615 LGIKDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGE 654



 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 26/56 (46%), Positives = 34/56 (60%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            ED E+  S DL  R++T   + RT L D I S    G+VI  KK+EFL FS+ QL+
Sbjct: 400  EDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLR 452



 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F+ IRN+AK+AARLGQSF+SS ETL+
Sbjct: 477  FDHIRNVAKYAARLGQSFSSSRETLN 502


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
           gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
           Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
           AltName: Full=RNA-directed RNA polymerase 1
           gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
           [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
           putative RNA-directed RNA polymerase [Arabidopsis
           thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
           polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 63.9 bits (154), Expect(5) = 6e-33
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = -1

Query: 799 LLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKVFV 620
           +LC  K D E FLS+MLQ    +KLLELRTKT IF +   RSM+  +DE  TLEYG+V V
Sbjct: 672 ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIF-ISGGRSMMGCLDETRTLEYGQVVV 730

Query: 619 QVS 611
           Q S
Sbjct: 731 QYS 733



 Score = 55.1 bits (131), Expect(5) = 6e-33
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSMSKF S+NTKLDVL WSK+QP + NRQ++ LLS
Sbjct: 588  KSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLS 622



 Score = 48.9 bits (115), Expect(5) = 6e-33
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 774 HMVDCVVFPQKGLRPHPNECSGSDLDGD 801



 Score = 33.1 bits (74), Expect(5) = 6e-33
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 539 FVVLGKVSIAKNPLLHPGDM 480
           F++ G V +AKNP LHPGD+
Sbjct: 742 FIITGPVVVAKNPCLHPGDV 761



 Score = 28.9 bits (63), Expect(5) = 6e-33
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG++D VFE +Q+         +T PL A EALG+++  E
Sbjct: 624 LGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGE 663



 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 26/56 (46%), Positives = 34/56 (60%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            ED E+  S DL  R++T   + RT L D I S    G+VI  KK+EFL FS+ QL+
Sbjct: 409  EDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLR 461



 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F+ IRN+AK+AARLGQSF+SS ETL+
Sbjct: 486  FDHIRNVAKYAARLGQSFSSSRETLN 511


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 63.9 bits (154), Expect(5) = 5e-32
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = -1

Query: 799 LLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKVFV 620
           +LC  K D E FLS+MLQ    +KLLELRTKT IF +   RSM+  +DE  TLEYG+V V
Sbjct: 672 ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIF-ISGGRSMMGCLDETRTLEYGQVVV 730

Query: 619 QVS 611
           Q S
Sbjct: 731 QYS 733



 Score = 55.1 bits (131), Expect(5) = 5e-32
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSMSKF S+NTKLDVL WSK+QP + NRQ++ LLS
Sbjct: 588  KSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLS 622



 Score = 48.9 bits (115), Expect(5) = 5e-32
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 774 HMVDCVVFPQKGLRPHPNECSGSDLDGD 801



 Score = 30.0 bits (66), Expect(5) = 5e-32
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 539 FVVLGKVSIAKNPLLHPGDM 480
           F++ G V +AKNP LH GD+
Sbjct: 742 FIITGPVVVAKNPCLHSGDV 761



 Score = 28.9 bits (63), Expect(5) = 5e-32
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG++D VFE +Q+         +T PL A EALG+++  E
Sbjct: 624 LGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGE 663



 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 26/56 (46%), Positives = 34/56 (60%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            ED E+  S DL  R++T   + RT L D I S    G+VI  KK+EFL FS+ QL+
Sbjct: 409  EDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLR 461



 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F+ IRN+AK+AARLGQSF+SS ETL+
Sbjct: 486  FDHIRNVAKYAARLGQSFSSSRETLN 511


>emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 513

 Score = 63.9 bits (154), Expect(5) = 5e-32
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = -1

Query: 799 LLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKVFV 620
           +LC  K D E FLS+MLQ    +KLLELRTKT IF +   RSM+  +DE  TLEYG+V V
Sbjct: 194 ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIF-ISGGRSMMGCLDETRTLEYGQVVV 252

Query: 619 QVS 611
           Q S
Sbjct: 253 QYS 255



 Score = 55.1 bits (131), Expect(5) = 5e-32
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSMSKF S+NTKLDVL WSK+QP + NRQ++ LLS
Sbjct: 110  KSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLS 144



 Score = 48.9 bits (115), Expect(5) = 5e-32
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 296 HMVDCVVFPQKGLRPHPNECSGSDLDGD 323



 Score = 30.0 bits (66), Expect(5) = 5e-32
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 539 FVVLGKVSIAKNPLLHPGDM 480
           F++ G V +AKNP LH GD+
Sbjct: 264 FIITGPVVVAKNPCLHSGDV 283



 Score = 28.9 bits (63), Expect(5) = 5e-32
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG++D VFE +Q+         +T PL A EALG+++  E
Sbjct: 146 LGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGE 185


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 79.3 bits (194), Expect(4) = 7e-30
 Identities = 44/72 (61%), Positives = 51/72 (70%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L+C  K D E FLS+MLQT   AKLLELRTKT IF VP  RSM+  +DE  TLEYG+V
Sbjct: 660 EMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF-VPNGRSMMGCLDETRTLEYGEV 718

Query: 625 FVQVSCLGREQS 590
           FVQ+S  G  QS
Sbjct: 719 FVQISGTGGRQS 730



 Score = 49.3 bits (116), Expect(4) = 7e-30
 Identities = 22/35 (62%), Positives = 28/35 (80%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSM K+ S+NT LDVL WSK++P F NRQ++ LLS
Sbjct: 578  KSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLS 612



 Score = 42.0 bits (97), Expect(4) = 7e-30
 Identities = 27/81 (33%), Positives = 41/81 (50%)
 Frame = -3

Query: 587 GDSHSMLNENGPEDNNFVVLGKVSIAKNPLLHPGDMCLAGCRCASAIWWIVFYFLDKEKD 408
           GDS  M   +G   +NF++ GKV +AKNP LHPGD+ +       A+  +V   +  +K 
Sbjct: 732 GDS-LMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKG 790

Query: 407 PIQMNVQRVILKVTSDLYFVC 345
                 +     +  D+YFVC
Sbjct: 791 MRPHPDECSGSDLDGDIYFVC 811



 Score = 29.3 bits (64), Expect(4) = 7e-30
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG+ D+VFE +Q+ +       +  PLRA EAL ++S  E
Sbjct: 614 LGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGE 653



 Score = 45.1 bits (105), Expect(2) = 3e-08
 Identities = 22/39 (56%), Positives = 25/39 (64%)
 Frame = -1

Query: 1300 KSMSFLSSQQFNLSDNSAWMFASKGPLTAASIRECIGDF 1184
            K   FL+     L DNSAWMFAS+  LTAA IR  +GDF
Sbjct: 438  KKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDF 476



 Score = 42.0 bits (97), Expect(2) = 3e-08
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLSGE*GRVEKYAICLLP 1063
            F  IRN+AK+AARLGQSF+SS ETL     +V K+ I ++P
Sbjct: 476  FSQIRNVAKYAARLGQSFSSSKETL-----KVAKHEIEIIP 511


>ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase
           1b [Cucumis sativus]
          Length = 1115

 Score = 60.8 bits (146), Expect(5) = 3e-29
 Identities = 32/65 (49%), Positives = 43/65 (66%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + +LC  K D E FL +ML T   +KL+ELR K+ IF +P  R+M+  +DE   LEYG+V
Sbjct: 672 EMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIF-IPNGRAMMGCLDETRNLEYGEV 730

Query: 625 FVQVS 611
           FVQ S
Sbjct: 731 FVQCS 735



 Score = 49.3 bits (116), Expect(5) = 3e-29
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HM+DCV+FP+ G RPHPNECS SD   D
Sbjct: 788 HMIDCVVFPQKGSRPHPNECSGSDLDGD 815



 Score = 45.8 bits (107), Expect(5) = 3e-29
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -2

Query: 1020 SMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            SM K+ S +TKLDVL WSK+ P F NRQ++ LLS
Sbjct: 591  SMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLS 624



 Score = 34.3 bits (77), Expect(5) = 3e-29
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDM 480
           + +F+V G V +AKNP LHPGD+
Sbjct: 753 NRHFIVTGTVVVAKNPCLHPGDV 775



 Score = 26.9 bits (58), Expect(5) = 3e-29
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -3

Query: 920 LGISDYVFENEQKR--SSL*T*FDITGPLRACEALGILSVAE 801
           LG+ D+VFE++Q+     L T F  + PL+A +AL ++S  E
Sbjct: 626 LGVQDHVFESKQQELIDELDTIF--SDPLKAQQALELMSPGE 665



 Score = 44.3 bits (103), Expect(2) = 2e-08
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = -1

Query: 1300 KSMSFLSSQQFNLSDNSAWMFASKGPLTAASIRECIGDFRD 1178
            K   FL+     L +N+AWMFA K  LTAA IR+ +GDF +
Sbjct: 450  KKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHN 490



 Score = 43.1 bits (100), Expect(2) = 2e-08
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F  IRN+AK+AARLGQSF SSTETLS
Sbjct: 488  FHNIRNVAKYAARLGQSFGSSTETLS 513


>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
          Length = 1118

 Score = 72.0 bits (175), Expect(4) = 8e-29
 Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L C  K D+E FL++MLQT   ++LL+LRTK+ IF +P+ R+M+  +DE  TLEYG+V
Sbjct: 599 EMLKCGYKPDEEPFLAMMLQTFRSSQLLDLRTKSRIF-IPQARNMMGCLDETGTLEYGQV 657

Query: 625 FVQVSCLGREQSVEIHTLCLMRMDQRTIT---LLYLERSALLKIRCC-TLVICVLQAVDV 458
           FVQ S  G+ +  E      ++ D+ T T    +   + A+ K  C     + VL+A+DV
Sbjct: 658 FVQFSGAGQRRFYEES----IKFDEYTSTDHNYIVKGKVAVAKNPCLHPGDLRVLEAIDV 713

Query: 457 PA 452
           PA
Sbjct: 714 PA 715



 Score = 47.0 bits (110), Expect(4) = 8e-29
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMV+C++FP+ G RPHPNECS SD   D
Sbjct: 718 HMVNCIVFPQKGTRPHPNECSGSDLDGD 745



 Score = 46.2 bits (108), Expect(4) = 8e-29
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = -2

Query: 1020 SMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            SM K+ S +TKL+VL WSK+QP F NRQ++ LLS
Sbjct: 518  SMLKYQSDDTKLNVLGWSKYQPCFLNRQIITLLS 551



 Score = 31.2 bits (69), Expect(4) = 8e-29
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG+ D+VFE +Q+ +       +  PL+A EAL ++S+ E
Sbjct: 553 LGVMDHVFEKKQREAVAQLNDILVDPLKALEALDLMSLGE 592



 Score = 45.8 bits (107), Expect(3) = 9e-10
 Identities = 24/34 (70%), Positives = 26/34 (76%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLSGE*GRVEK 1084
            F  IRN+AK+AARLGQSF SSTETLS     VEK
Sbjct: 415  FSSIRNVAKYAARLGQSFGSSTETLSVAQNEVEK 448



 Score = 45.1 bits (105), Expect(3) = 9e-10
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            ED  + +++DL  R A  DE  RT L + +LS    G+ I  KK+EFL FS+ QL+
Sbjct: 335  EDWSKMYASDLSPRGAGGDENTRTKLYERVLSTLRNGITIGSKKFEFLAFSSSQLR 390



 Score = 20.4 bits (41), Expect(3) = 9e-10
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 1488 ITTLKVYFMRLKNNESDSVLR 1426
            +T  KVYF   + N S+ VLR
Sbjct: 298  VTPTKVYFHGPEANVSNRVLR 318


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score = 79.3 bits (194), Expect(4) = 1e-28
 Identities = 44/72 (61%), Positives = 51/72 (70%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L+C  K D E FLS+MLQT   AKLLELRTKT IF VP  RSM+  +DE  TLEYG+V
Sbjct: 204 EMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF-VPNGRSMMGCLDETRTLEYGEV 262

Query: 625 FVQVSCLGREQS 590
           FVQ+S  G  QS
Sbjct: 263 FVQISGTGGRQS 274



 Score = 49.7 bits (117), Expect(4) = 1e-28
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSM K+ S NT LDVL WSK+QP F NRQ++ LLS
Sbjct: 122  KSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLS 156



 Score = 41.2 bits (95), Expect(4) = 1e-28
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -3

Query: 587 GDSHSMLNENGPEDNNFVVLGKVSIAKNPLLHPGDMCLAGCRCASAIWWIV--FYFLDKE 414
           GDS  M   +G   +NF++ GK+ +AKNP LHPGD+ +        +  +V    F  K 
Sbjct: 276 GDS-LMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKG 334

Query: 413 KDPIQMNVQRVILKVTSDLYFVC 345
           K P         L    D+YFVC
Sbjct: 335 KRPHPNECSGSDL--DGDIYFVC 355



 Score = 25.4 bits (54), Expect(4) = 1e-28
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG+ D+VFE +Q+ +       +  P+ A EAL ++S  E
Sbjct: 158 LGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGE 197


>dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
          Length = 1115

 Score = 58.2 bits (139), Expect(5) = 2e-28
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + +LC  K D E FL +ML T   +KL+ELR K+ IF +P  R+M+  +DE   LEYG+V
Sbjct: 672 EMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIF-IPNGRAMMGCLDETRNLEYGEV 730

Query: 625 FVQVS 611
           F Q S
Sbjct: 731 FWQCS 735



 Score = 49.3 bits (116), Expect(5) = 2e-28
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HM+DCV+FP+ G RPHPNECS SD   D
Sbjct: 788 HMIDCVVFPQKGSRPHPNECSGSDLDGD 815



 Score = 45.8 bits (107), Expect(5) = 2e-28
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -2

Query: 1020 SMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            SM K+ S +TKLDVL WSK+ P F NRQ++ LLS
Sbjct: 591  SMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLS 624



 Score = 34.3 bits (77), Expect(5) = 2e-28
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDM 480
           + +F+V G V +AKNP LHPGD+
Sbjct: 753 NRHFIVTGTVVVAKNPCLHPGDV 775



 Score = 26.9 bits (58), Expect(5) = 2e-28
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -3

Query: 920 LGISDYVFENEQKR--SSL*T*FDITGPLRACEALGILSVAE 801
           LG+ D+VFE++Q+     L T F  + PL+A +AL ++S  E
Sbjct: 626 LGVQDHVFESKQQELIDELDTIF--SDPLKAQQALELMSPGE 665



 Score = 44.3 bits (103), Expect(2) = 7e-08
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = -1

Query: 1300 KSMSFLSSQQFNLSDNSAWMFASKGPLTAASIRECIGDFRD 1178
            K   FL+     L +N+AWMFA K  LTAA IR+ +GDF +
Sbjct: 450  KKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHN 490



 Score = 41.2 bits (95), Expect(2) = 7e-08
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F  IRN+AK+AARLGQ F SSTETLS
Sbjct: 488  FHNIRNVAKYAARLGQPFGSSTETLS 513


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score = 68.6 bits (166), Expect(4) = 4e-25
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + LLC  + D E FLS+MLQT   +KLLELRTKT IF +P  RSM+  +DE  TLE+G+V
Sbjct: 673 EMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIF-IPNGRSMMGCLDETRTLEHGQV 731

Query: 625 FVQVS 611
           FV+ S
Sbjct: 732 FVKFS 736



 Score = 46.2 bits (108), Expect(4) = 4e-25
 Identities = 22/35 (62%), Positives = 28/35 (80%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            +SM K+ S+NTKLDVL  SK+QP F NRQ++ LLS
Sbjct: 591  RSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLS 625



 Score = 40.4 bits (93), Expect(4) = 4e-25
 Identities = 25/80 (31%), Positives = 39/80 (48%)
 Frame = -3

Query: 584 DSHSMLNENGPEDNNFVVLGKVSIAKNPLLHPGDMCLAGCRCASAIWWIVFYFLDKEKDP 405
           DS  M +E G     +++ G V +AKNP LHPGD+ +       A+  +V   +  +K P
Sbjct: 745 DSSDMFSERG-RGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGP 803

Query: 404 IQMNVQRVILKVTSDLYFVC 345
                +     +  D+YFVC
Sbjct: 804 RPHPNECSGSDLDGDIYFVC 823



 Score = 28.5 bits (62), Expect(4) = 4e-25
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG+ D+ FE +Q+ +       +T PLRA EAL ++S  E
Sbjct: 627 LGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGE 666



 Score = 48.5 bits (114), Expect(2) = 3e-09
 Identities = 26/60 (43%), Positives = 38/60 (63%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK*QFC 1248
            E+ E+ HSTD+  R ++ +E  RT + + ILS    G+VI  KK+EFL FS+ QL+   C
Sbjct: 409  EELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSC 468



 Score = 42.0 bits (97), Expect(2) = 3e-09
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F  IRN+A++AARLGQSF SSTETLS
Sbjct: 489  FHKIRNVARYAARLGQSFGSSTETLS 514


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
           max] gi|571439308|ref|XP_006574822.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
           max] gi|571439310|ref|XP_006574823.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
           max]
          Length = 1125

 Score = 68.9 bits (167), Expect(4) = 3e-24
 Identities = 36/65 (55%), Positives = 48/65 (73%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L+C  K ++E FLS+MLQT   +KLLELR K+ IF +PK R+M+  +DE  TLEYG+V
Sbjct: 673 EMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIF-IPKGRAMMGCLDETRTLEYGQV 731

Query: 625 FVQVS 611
           FVQ S
Sbjct: 732 FVQFS 736



 Score = 46.2 bits (108), Expect(4) = 3e-24
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSM K+ S NTKLDVL  SKFQP + NRQ++ LLS
Sbjct: 591  KSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLS 625



 Score = 39.7 bits (91), Expect(4) = 3e-24
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = -3

Query: 542 NFVVLGKVSIAKNPLLHPGDMCLAGCRCASAIWWIVFYFLDKEKDPIQMNVQRVILKVTS 363
           N++V GKV +AKNP LHPGD+ +        ++ +V   +  +K P     +     +  
Sbjct: 755 NYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDG 814

Query: 362 DLYFVC 345
           D+YFVC
Sbjct: 815 DIYFVC 820



 Score = 25.8 bits (55), Expect(4) = 3e-24
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LGI D VFE +Q+ +       +T  L+A E L ++S  E
Sbjct: 627 LGIKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGE 666



 Score = 43.5 bits (101), Expect(3) = 1e-06
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLSGE*GRVE 1087
            F  IRN+AK+AARLGQSF SSTETLS     VE
Sbjct: 489  FSQIRNVAKYAARLGQSFGSSTETLSVHRDEVE 521



 Score = 34.3 bits (77), Expect(3) = 1e-06
 Identities = 21/56 (37%), Positives = 34/56 (60%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            E+ ++  STDL +R+    +  +T +   ILS    G+V+  KK+EFL FS+ QL+
Sbjct: 412  EELDKLFSTDLSSRS----QNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLR 463



 Score = 22.3 bits (46), Expect(3) = 1e-06
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 1488 ITTLKVYFMRLKNNESDSVLRGLR 1417
            IT  KVYF   + N S+ VLR  R
Sbjct: 375  ITPCKVYFCGPEMNVSNRVLRHFR 398


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score = 68.9 bits (167), Expect(3) = 3e-23
 Identities = 37/68 (54%), Positives = 47/68 (69%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L C  K D+E FLS+MLQT  +AKLL+LR K  IF +P+ R M+  +DE  TLEYG+V
Sbjct: 666 EMLKCGYKPDEEPFLSMMLQTFRLAKLLDLRVKARIF-IPQARQMMGCMDETGTLEYGQV 724

Query: 625 FVQVSCLG 602
           FVQ S  G
Sbjct: 725 FVQFSGTG 732



 Score = 52.4 bits (124), Expect(3) = 3e-23
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = -2

Query: 453 RHMVDCVLFPR*GKRPHPNECSESDFKSD 367
           +HMVDCV+FPR G+RPHPNECS SD   D
Sbjct: 773 QHMVDCVVFPRKGRRPHPNECSGSDLDGD 801



 Score = 36.2 bits (82), Expect(3) = 3e-23
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 551 EDNNFVVLGKVSIAKNPLLHPGDM 480
           E   + V GKV++AKNP LHPGD+
Sbjct: 738 EGTKYTVTGKVAVAKNPCLHPGDV 761



 Score = 43.1 bits (100), Expect(2) = 4e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLSGE*GRVEKYAICLLP 1063
            F  IRN+AK+AARLGQSF+SSTETL     +V +Y +  +P
Sbjct: 482  FSSIRNVAKYAARLGQSFSSSTETL-----KVAQYEVERIP 517



 Score = 40.0 bits (92), Expect(2) = 4e-07
 Identities = 21/56 (37%), Positives = 34/56 (60%)
 Frame = -3

Query: 1427 EDSEETHSTDLCTRAATSDEKNRTLL*DGILSPSLCGVVICYKKYEFLVFSAIQLK 1260
            E+ ++ +STDL  + AT     RT L + +LS    G+ I  K+++FL FS+ QL+
Sbjct: 402  EEWDKMYSTDLSPKVATGVGNGRTKLYERVLSTLRNGITIGEKRFQFLAFSSSQLR 457


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score = 67.4 bits (163), Expect(4) = 4e-23
 Identities = 37/73 (50%), Positives = 52/73 (71%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L C  + D E +LS+MLQT   +KLLELRTK+ IF +P  R+M+  +DE  TLEYG+V
Sbjct: 671 EMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIF-IPNGRAMMGCLDETRTLEYGQV 729

Query: 625 FVQVSCLGREQSV 587
           FVQ+S  GR +++
Sbjct: 730 FVQISS-GRHRNL 741



 Score = 47.0 bits (110), Expect(4) = 4e-23
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 1023 KSMSKFTSQNTKLDVLKWSKFQPFFRNRQVMILLS 919
            KSM KF S NTKLDVL  SK+QP F NRQ++ L+S
Sbjct: 589  KSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMS 623



 Score = 34.7 bits (78), Expect(4) = 4e-23
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDMCLAGCRCASAIWWIVFYFLDKEKDPIQMNVQRVILKV 369
           +++ V+ G V++AKNP LHPGD+ +        ++ +V   +  +K       +     +
Sbjct: 753 EHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDL 812

Query: 368 TSDLYFVC 345
             D+YFVC
Sbjct: 813 DGDIYFVC 820



 Score = 27.7 bits (60), Expect(4) = 4e-23
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 920 LGISDYVFENEQKRSSL*T*FDITGPLRACEALGILSVAE 801
           LG+ D +FE +Q  +       +T PL+A EAL ++S  E
Sbjct: 625 LGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGE 664



 Score = 40.4 bits (93), Expect(2) = 6e-06
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = -1

Query: 1300 KSMSFLSSQQFNLSDNSAWMFASKGPLTAASIRECIGDFR 1181
            K+  FL+     L DNS WMFAS   + AA IR  +GDFR
Sbjct: 450  KTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFR 489



 Score = 38.5 bits (88), Expect(2) = 6e-06
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F  I+N AK+AARLGQSF SSTE LS
Sbjct: 488  FRHIKNPAKYAARLGQSFGSSTEALS 513


>ref|XP_007224014.1| hypothetical protein PRUPE_ppa015019mg, partial [Prunus persica]
           gi|462420950|gb|EMJ25213.1| hypothetical protein
           PRUPE_ppa015019mg, partial [Prunus persica]
          Length = 808

 Score = 65.9 bits (159), Expect(3) = 5e-23
 Identities = 36/65 (55%), Positives = 46/65 (70%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L+C  K D E FLS+MLQ    +KL+ELRTKT IF VP  RS++  +DE  TLEYG+V
Sbjct: 394 EMLVCGYKPDAEPFLSLMLQAFCASKLVELRTKTRIF-VPDGRSLMGCLDETRTLEYGQV 452

Query: 625 FVQVS 611
           +VQ S
Sbjct: 453 YVQCS 457



 Score = 50.4 bits (119), Expect(3) = 5e-23
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HM+DCV+FP+ GKRPHPNECS SD   D
Sbjct: 507 HMMDCVVFPQKGKRPHPNECSGSDLDGD 534



 Score = 40.4 bits (93), Expect(3) = 5e-23
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDM 480
           D+NF+V GKV +AKNP LHPGD+
Sbjct: 472 DDNFIVRGKVVVAKNPCLHPGDV 494


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 69.7 bits (169), Expect(3) = 1e-22
 Identities = 40/71 (56%), Positives = 49/71 (69%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + LLC  + D E FLS+MLQT   +KLLELRTK+ IFV    RSM+  +DE  TL+YG+V
Sbjct: 666 EMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVA-NGRSMMGCLDETRTLDYGQV 724

Query: 625 FVQVSCLGREQ 593
           FVQVS    EQ
Sbjct: 725 FVQVSGSRSEQ 735



 Score = 49.7 bits (117), Expect(3) = 1e-22
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 769 HMVDCVVFPQKGSRPHPNECSGSDLDGD 796



 Score = 36.2 bits (82), Expect(3) = 1e-22
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDM 480
           +  F+V GKV +AKNP LHPGD+
Sbjct: 734 EQRFIVQGKVVVAKNPCLHPGDV 756



 Score = 43.5 bits (101), Expect(2) = 7e-08
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLS 1108
            F  IRN+AK+AARLGQSF+SSTETLS
Sbjct: 482  FSKIRNVAKYAARLGQSFSSSTETLS 507



 Score = 42.0 bits (97), Expect(2) = 7e-08
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = -1

Query: 1300 KSMSFLSSQQFNLSDNSAWMFASKGPLTAASIRECIGDF 1184
            K   FL+     L +NSAWMFAS+  LTAA IR  +G+F
Sbjct: 444  KQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEF 482


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 67.8 bits (164), Expect(3) = 6e-22
 Identities = 38/65 (58%), Positives = 45/65 (69%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + LLC  K D E FLS+ML+T   +KLLELRTK  IF V K RSM+  +DE  TL YG+V
Sbjct: 666 EMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIF-VQKGRSMMGCLDETRTLNYGQV 724

Query: 625 FVQVS 611
           FVQ S
Sbjct: 725 FVQFS 729



 Score = 49.3 bits (116), Expect(3) = 6e-22
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 769 HMVDCVVFPQKGTRPHPNECSGSDLDGD 796



 Score = 36.2 bits (82), Expect(3) = 6e-22
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDM 480
           +  F+V GKV +AKNP LHPGD+
Sbjct: 734 ERRFIVQGKVIVAKNPCLHPGDV 756



 Score = 44.7 bits (104), Expect(2) = 4e-08
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLSGE*GRVEKYAICLLP 1063
            F  IRN+AK+AARLGQSF+SSTETLS     V K  I L+P
Sbjct: 482  FSKIRNVAKYAARLGQSFSSSTETLS-----VSKDEINLIP 517



 Score = 41.6 bits (96), Expect(2) = 4e-08
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = -1

Query: 1300 KSMSFLSSQQFNLSDNSAWMFASKGPLTAASIRECIGDF 1184
            K   FL+     L +NSAWMFAS+  LTAA IR  +G+F
Sbjct: 444  KRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNF 482


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 67.8 bits (164), Expect(3) = 6e-22
 Identities = 38/65 (58%), Positives = 45/65 (69%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + LLC  K D E FLS+ML+T   +KLLELRTK  IF V K RSM+  +DE  TL YG+V
Sbjct: 666 EMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIF-VQKGRSMMGCLDETRTLNYGQV 724

Query: 625 FVQVS 611
           FVQ S
Sbjct: 725 FVQFS 729



 Score = 49.3 bits (116), Expect(3) = 6e-22
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDCV+FP+ G RPHPNECS SD   D
Sbjct: 769 HMVDCVVFPQKGTRPHPNECSGSDLDGD 796



 Score = 36.2 bits (82), Expect(3) = 6e-22
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 548 DNNFVVLGKVSIAKNPLLHPGDM 480
           +  F+V GKV +AKNP LHPGD+
Sbjct: 734 ERRFIVQGKVIVAKNPCLHPGDV 756



 Score = 44.7 bits (104), Expect(2) = 4e-08
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -2

Query: 1185 FEIIRNLAKFAARLGQSFASSTETLSGE*GRVEKYAICLLP 1063
            F  IRN+AK+AARLGQSF+SSTETLS     V K  I L+P
Sbjct: 482  FSKIRNVAKYAARLGQSFSSSTETLS-----VSKDEINLIP 517



 Score = 41.6 bits (96), Expect(2) = 4e-08
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = -1

Query: 1300 KSMSFLSSQQFNLSDNSAWMFASKGPLTAASIRECIGDF 1184
            K   FL+     L +NSAWMFAS+  LTAA IR  +G+F
Sbjct: 444  KRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNF 482


>ref|XP_007224941.1| hypothetical protein PRUPE_ppa021500mg [Prunus persica]
           gi|462421877|gb|EMJ26140.1| hypothetical protein
           PRUPE_ppa021500mg [Prunus persica]
          Length = 1104

 Score = 65.5 bits (158), Expect(3) = 2e-21
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = -1

Query: 805 QKLLCDSKADQESFLSVMLQTVHVAKLLELRTKT*IFVVPKRRSMIRYIDEAATLEYGKV 626
           + L C  + D E FLS+MLQ    +KL+ELRTKT IF VP  RS++  +DE  TLEYG+V
Sbjct: 657 EMLACGYEPDAEPFLSLMLQAFCASKLVELRTKTRIF-VPNGRSLMGCLDETGTLEYGQV 715

Query: 625 FVQVS 611
           FVQ S
Sbjct: 716 FVQCS 720



 Score = 49.3 bits (116), Expect(3) = 2e-21
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 450 HMVDCVLFPR*GKRPHPNECSESDFKSD 367
           HMVDC++FP+ G RPHPNECS SD   D
Sbjct: 772 HMVDCIVFPQKGNRPHPNECSGSDLDGD 799



 Score = 37.0 bits (84), Expect(3) = 2e-21
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -3

Query: 587 GDSHSMLNENGPEDNNFVVLGKVSIAKNPLLHPGDM 480
           G+S+S    +   ++NF+V G V +AKNP LHPGD+
Sbjct: 727 GNSNSSATSS---EDNFIVEGNVVVAKNPCLHPGDV 759