BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00038801
         (1436 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   558   e-156
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              554   e-155
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   548   e-153
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   548   e-153
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   543   e-152
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   543   e-152
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   538   e-150
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   527   e-147
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   521   e-145
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   515   e-143
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   512   e-142
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   510   e-142
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps...   502   e-139
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   497   e-138
gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indi...   492   e-136
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   490   e-136
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme...   489   e-136
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme...   489   e-136
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   489   e-135
ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, par...   484   e-134

>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  558 bits (1438), Expect = e-156
 Identities = 293/483 (60%), Positives = 359/483 (74%), Gaps = 5/483 (1%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDR---DCS--SSPVYHRIRKEGILVGLRRFQFFVFKDG 1272
            THL RVLGD+N+LLVKF+ +  DR   +CS  S+  Y++I +EGI VGLR+++FFVFKDG
Sbjct: 207  THLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDG 266

Query: 1271 GKEQKKKQMQTSSFASSVKCYFVCLESSGLHDKSISEARSHFMHIHNISSMPKYMPRLSL 1092
            GKE+KKK        SSVKCYFV +ESS L  K++ EAR  FMH H +SS+ KYM R SL
Sbjct: 267  GKEEKKKNP-----TSSVKCYFVFMESSALSGKTVHEARCIFMHAHMVSSVAKYMARFSL 321

Query: 1091 ILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISEDLALLCQR 912
            ILSKT K+ +D ++VNI+ I D+P  D++G+ V ++D   LI TDGTGFISEDLAL C  
Sbjct: 322  ILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPN 381

Query: 911  NIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAAAKGTLLV 732
            N+ +GKY + +G+  V D                     PLL QCRLF +G A KGTLL+
Sbjct: 382  NLCRGKYMN-NGNSDVCDSRY------------------PLLIQCRLFNNGCAVKGTLLL 422

Query: 731  NKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLALLAYGGV 552
            N+KLP  TI IRPSMIKVE+DPKL +  + NS+EI  TSN+P+ S LSKYL+ALL+YGGV
Sbjct: 423  NRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGV 482

Query: 551  PQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDEPYLQDRL 372
            P EYFMNLL  ALEDA +V  +K AAL V+LR+ EMD+ +V RMILSGIPIDEP+L   L
Sbjct: 483  PNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCL 542

Query: 371  RVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVLVYKNPGL 192
              ++NEE+K L  GKLPV++C+YLMGT DPTG L  DEVC+IL+ GQ+ G VLVYK+PGL
Sbjct: 543  SFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGL 602

Query: 191  HFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWVSRNPQLL 12
            HFGD+HV+ ATYVE L  FVGNAKYAIFFP KGPRSLADE+ANSDFDGDMYWVSRN QLL
Sbjct: 603  HFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLL 662

Query: 11   ESF 3
            + F
Sbjct: 663  QYF 665


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  554 bits (1427), Expect = e-155
 Identities = 291/483 (60%), Positives = 357/483 (73%), Gaps = 5/483 (1%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDR---DCS--SSPVYHRIRKEGILVGLRRFQFFVFKDG 1272
            THL RVLGD+N+LLVKF+ +  DR   +CS  S+  Y++I +EGI VGLR+++FFVFKDG
Sbjct: 199  THLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDG 258

Query: 1271 GKEQKKKQMQTSSFASSVKCYFVCLESSGLHDKSISEARSHFMHIHNISSMPKYMPRLSL 1092
            GKE+KKK        SSVKCYFV +ESS L  K++ EAR  FMH H +SS+ KYM R SL
Sbjct: 259  GKEEKKKNP-----TSSVKCYFVFMESSALSGKTVHEARCIFMHAHMVSSVAKYMARFSL 313

Query: 1091 ILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISEDLALLCQR 912
            ILSKT K+ +D ++VNI+ I D+P  D++G+ V ++D   LI TDGTGFISEDLAL C  
Sbjct: 314  ILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPN 373

Query: 911  NIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAAAKGTLLV 732
            N+ +GKY + +G+                          PLL QCRLF +G A KGTLL+
Sbjct: 374  NLCRGKYMN-NGN------------------------SDPLLIQCRLFNNGCAVKGTLLL 408

Query: 731  NKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLALLAYGGV 552
            N+KLP  TI IRPSMIKVE+DPKL +  + NS+EI  TSN+P+ S LSKYL+ALL+YGGV
Sbjct: 409  NRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGV 468

Query: 551  PQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDEPYLQDRL 372
            P EYFMNLL  ALEDA +V  +K AAL V+LR+ EMD+ +V RMILSGIPIDEP+L   L
Sbjct: 469  PNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCL 528

Query: 371  RVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVLVYKNPGL 192
              ++NEE+K L  GKLPV++C+YLMGT DPTG L  DEVC+IL+ GQ+ G VLVYK+PGL
Sbjct: 529  SFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGL 588

Query: 191  HFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWVSRNPQLL 12
            HFGD+HV+ ATYVE L  FVGNAKYAIFFP KGPRSLADE+ANSDFDGDMYWVSRN QLL
Sbjct: 589  HFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLL 648

Query: 11   ESF 3
            + F
Sbjct: 649  QYF 651


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  548 bits (1413), Expect = e-153
 Identities = 292/494 (59%), Positives = 360/494 (72%), Gaps = 16/494 (3%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSS-----PVYHRIRKEGILVGLRRFQFFVFKDG 1272
            THL R LGDDN+LLVKF    G    S++       Y+ I +EGILVGLR + FFVFKDG
Sbjct: 246  THLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDG 305

Query: 1271 GKEQKKKQMQTSSFASSVKCYFVCLESSGLHD---------KSISEARSHFMHIHNISSM 1119
            GKE+KKK   TS     VKCYFV +ESS   D         K++ EAR  FMH+  +SS+
Sbjct: 306  GKEEKKKDPSTSP----VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSV 361

Query: 1118 PKYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFIS 939
              YM RLSLILSKT K+++DF+ +NIE I+D+PC D++GN V  +DG+ LIHTDGTGFIS
Sbjct: 362  ANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFIS 420

Query: 938  EDLALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDG 759
            EDLAL C   + K K T+ D  +R +DR   E   SD     S+ G+PPLL Q RLFY+G
Sbjct: 421  EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 480

Query: 758  AAAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYL 579
             A KGTLL+NKKLP  TI IRPSMIKV++D  L +  + NSLE+V TSN+P+ + LS+ L
Sbjct: 481  TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNL 540

Query: 578  LALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMD-NFLVPRMILSGIP 402
            +ALL+YGGVP+ +F+++L  AL+DA+ V  NK  AL V+  Y  MD +F   RMILSGI 
Sbjct: 541  IALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS 600

Query: 401  IDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLS- 225
            +DEPYLQ RL +LM EEKKSL  GKLPV+E YYLMGTVDPTGIL  +EVC+IL+DGQ+S 
Sbjct: 601  LDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSW 660

Query: 224  GNVLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGD 45
              VLVY+NPGLHFGD+HV+KATYV+EL +FVG +KYAIFFP  GPRSLADEIA  DFDGD
Sbjct: 661  EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGD 720

Query: 44   MYWVSRNPQLLESF 3
            MY+VSRNP+LL+ F
Sbjct: 721  MYFVSRNPELLKHF 734


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  548 bits (1413), Expect = e-153
 Identities = 292/494 (59%), Positives = 360/494 (72%), Gaps = 16/494 (3%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSS-----PVYHRIRKEGILVGLRRFQFFVFKDG 1272
            THL R LGDDN+LLVKF    G    S++       Y+ I +EGILVGLR + FFVFKDG
Sbjct: 248  THLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDG 307

Query: 1271 GKEQKKKQMQTSSFASSVKCYFVCLESSGLHD---------KSISEARSHFMHIHNISSM 1119
            GKE+KKK   TS     VKCYFV +ESS   D         K++ EAR  FMH+  +SS+
Sbjct: 308  GKEEKKKDPSTSP----VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSV 363

Query: 1118 PKYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFIS 939
              YM RLSLILSKT K+++DF+ +NIE I+D+PC D++GN V  +DG+ LIHTDGTGFIS
Sbjct: 364  ANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFIS 422

Query: 938  EDLALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDG 759
            EDLAL C   + K K T+ D  +R +DR   E   SD     S+ G+PPLL Q RLFY+G
Sbjct: 423  EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 482

Query: 758  AAAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYL 579
             A KGTLL+NKKLP  TI IRPSMIKV++D  L +  + NSLE+V TSN+P+ + LS+ L
Sbjct: 483  TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNL 542

Query: 578  LALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMD-NFLVPRMILSGIP 402
            +ALL+YGGVP+ +F+++L  AL+DA+ V  NK  AL V+  Y  MD +F   RMILSGI 
Sbjct: 543  IALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS 602

Query: 401  IDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLS- 225
            +DEPYLQ RL +LM EEKKSL  GKLPV+E YYLMGTVDPTGIL  +EVC+IL+DGQ+S 
Sbjct: 603  LDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSW 662

Query: 224  GNVLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGD 45
              VLVY+NPGLHFGD+HV+KATYV+EL +FVG +KYAIFFP  GPRSLADEIA  DFDGD
Sbjct: 663  EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGD 722

Query: 44   MYWVSRNPQLLESF 3
            MY+VSRNP+LL+ F
Sbjct: 723  MYFVSRNPELLKHF 736


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  543 bits (1400), Expect = e-152
 Identities = 284/490 (57%), Positives = 354/490 (72%), Gaps = 14/490 (2%)
 Frame = -1

Query: 1430 LHRVLGDDNVLLVKFSGNEGDRDCSSSPV------YHRIRKEGILVGLRRFQFFVFKDGG 1269
            L R LGDDN+L+VKF   + DRD  S  +      Y+++  EGI VGLR ++FFVFKDGG
Sbjct: 118  LQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGG 177

Query: 1268 KEQKKKQMQTSSFASSVKCYFVCLESSG--------LHDKSISEARSHFMHIHNISSMPK 1113
            KE+KKK   TS     VKC+FV +ES          L  K+I +ARS FMH+ N+SS+  
Sbjct: 178  KEEKKKDPTTSP----VKCFFVRMESVASIDNQDNILSGKTIRQARSVFMHVDNLSSLSN 233

Query: 1112 YMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISED 933
            YM R SLILSKT  +++D + V+I+ I D+PC D++GN V   DG  LIHTDGTGFIS D
Sbjct: 234  YMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHD 293

Query: 932  LALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAA 753
            LAL C +N  KG        +R+   N   E+  + ++     GDPPLL Q RLF +G A
Sbjct: 294  LALKCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRN-----GDPPLLIQFRLFNNGRA 348

Query: 752  AKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLA 573
             KGT LVNKKL   T+HIRPSMIKVE+DPKL +  S NSLEIV TS++PK + LSK L+A
Sbjct: 349  VKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIA 408

Query: 572  LLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDE 393
            LL+YGGVP+E+FM ++  ALEDA  +  NK+AAL VAL Y +MD+ +V  MI  GIP++E
Sbjct: 409  LLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEE 468

Query: 392  PYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVL 213
            PYLQ RL +LM EEKKSL GGK+PV E YYLMGT DPTG+L  DEVC+IL+ GQ+SG VL
Sbjct: 469  PYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVL 528

Query: 212  VYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWV 33
            +Y+NPGLHFGD+H++KATYV EL +FVGNAKYAIFFP KGPRSLADE++  DFDGDM++V
Sbjct: 529  IYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFV 588

Query: 32   SRNPQLLESF 3
            SRNPQLLE+F
Sbjct: 589  SRNPQLLETF 598


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  543 bits (1400), Expect = e-152
 Identities = 284/490 (57%), Positives = 354/490 (72%), Gaps = 14/490 (2%)
 Frame = -1

Query: 1430 LHRVLGDDNVLLVKFSGNEGDRDCSSSPV------YHRIRKEGILVGLRRFQFFVFKDGG 1269
            L R LGDDN+L+VKF   + DRD  S  +      Y+++  EGI VGLR ++FFVFKDGG
Sbjct: 140  LQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGG 199

Query: 1268 KEQKKKQMQTSSFASSVKCYFVCLESSG--------LHDKSISEARSHFMHIHNISSMPK 1113
            KE+KKK   TS     VKC+FV +ES          L  K+I +ARS FMH+ N+SS+  
Sbjct: 200  KEEKKKDPTTSP----VKCFFVRMESVASIDNQDNILSGKTIRQARSVFMHVDNLSSLSN 255

Query: 1112 YMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISED 933
            YM R SLILSKT  +++D + V+I+ I D+PC D++GN V   DG  LIHTDGTGFIS D
Sbjct: 256  YMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHD 315

Query: 932  LALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAA 753
            LAL C +N  KG        +R+   N   E+  + ++     GDPPLL Q RLF +G A
Sbjct: 316  LALKCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRN-----GDPPLLIQFRLFNNGRA 370

Query: 752  AKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLA 573
             KGT LVNKKL   T+HIRPSMIKVE+DPKL +  S NSLEIV TS++PK + LSK L+A
Sbjct: 371  VKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIA 430

Query: 572  LLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDE 393
            LL+YGGVP+E+FM ++  ALEDA  +  NK+AAL VAL Y +MD+ +V  MI  GIP++E
Sbjct: 431  LLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEE 490

Query: 392  PYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVL 213
            PYLQ RL +LM EEKKSL GGK+PV E YYLMGT DPTG+L  DEVC+IL+ GQ+SG VL
Sbjct: 491  PYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVL 550

Query: 212  VYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWV 33
            +Y+NPGLHFGD+H++KATYV EL +FVGNAKYAIFFP KGPRSLADE++  DFDGDM++V
Sbjct: 551  IYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFV 610

Query: 32   SRNPQLLESF 3
            SRNPQLLE+F
Sbjct: 611  SRNPQLLETF 620


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  538 bits (1387), Expect = e-150
 Identities = 283/490 (57%), Positives = 350/490 (71%), Gaps = 14/490 (2%)
 Frame = -1

Query: 1430 LHRVLGDDNVLLVKFSGNEGDRDCSSSPV------YHRIRKEGILVGLRRFQFFVFKDGG 1269
            L R LGDDN+L+VKF   + +R   SS +      Y+++ +EGI VGLR ++FFVFKDGG
Sbjct: 118  LQRTLGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGG 177

Query: 1268 KEQKKKQMQTSSFASSVKCYFVCLESSGLHD--------KSISEARSHFMHIHNISSMPK 1113
            KE+KKK   TS     VKC+FVC+ES    D        K+I +ARS FMH+ N+SS+  
Sbjct: 178  KEEKKKDPTTSP----VKCFFVCMESVASVDNQDNILCGKTIRQARSVFMHVDNLSSLSN 233

Query: 1112 YMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISED 933
            YM R SLILSKT  +++D + V+I+ I D+PC D++GN V   DG  LIHTDGTGFIS D
Sbjct: 234  YMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHD 293

Query: 932  LALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAA 753
            LAL C +N  KG        +R+   N   E+  +        GDPPLL Q RLF +G A
Sbjct: 294  LALKCPKNQVKGTCLQASNIERLRVHNEVMEQNPE-----CLHGDPPLLIQFRLFNNGRA 348

Query: 752  AKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLA 573
             KGT LVNKKL   T+H+RPSMIKVE+DPKL N  S NSLEIV TS +PK + LSK L+A
Sbjct: 349  VKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIA 408

Query: 572  LLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDE 393
            LL+YGGVP+E+FM +L  ALEDA  +  NK AAL VAL Y +MD+ +V  MI  GIP++E
Sbjct: 409  LLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEE 468

Query: 392  PYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVL 213
            PYLQ  L +L  EEKKSL GGK+PV E YYLMGT DPTG+L  DEVC+IL+ GQ+SG VL
Sbjct: 469  PYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVL 528

Query: 212  VYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWV 33
            VY+NPGLHFGD+H++KATYV EL +FVGNAKYAIFFP KGPRSLADE++  DFDGDM++V
Sbjct: 529  VYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFV 588

Query: 32   SRNPQLLESF 3
            SRNP+LLE+F
Sbjct: 589  SRNPRLLENF 598


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  527 bits (1358), Expect = e-147
 Identities = 286/497 (57%), Positives = 352/497 (70%), Gaps = 19/497 (3%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSP-----VYHRIRKEGILVGLRRFQFFVFKDG 1272
            THL RVLGDDNVL+VKF+ ++ D   S+        Y +I ++GIL+GLRR+ FFVFKDG
Sbjct: 289  THLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDG 348

Query: 1271 GKEQKKKQMQTSSFASSVKCYFVCLESSGLHDK---------SISEARSHFMHIHNISSM 1119
            GKE+KKK   TS+    VKCYFV +ES    DK         ++ EARS FMH H +SS+
Sbjct: 349  GKEEKKKNPTTSA----VKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSI 404

Query: 1118 PKYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFIS 939
              YM R SLILSKT  +++D ++VN++ I D PC D  GN +  +DG  LIHTDGTGFIS
Sbjct: 405  ASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIY-RDGKPLIHTDGTGFIS 463

Query: 938  EDLALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIG-----DPPLLTQCR 774
            EDLAL C  N+ KG+    D D + + +     +   +K+++  +      +PPLL Q R
Sbjct: 464  EDLALECPMNVFKGQ-AKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQFR 522

Query: 773  LFYDGAAAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSC 594
            LFY+G A KGT L+NK+LP  TI IR SMIKVE DP L N  + NSLE+V TSN PK + 
Sbjct: 523  LFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRTF 582

Query: 593  LSKYLLALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMIL 414
            LS+ L+ALL YGGVP+EYFMN+L  AL+D Q V  +K AAL V++   EMD+FLV RMIL
Sbjct: 583  LSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMIL 642

Query: 413  SGIPIDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDG 234
            +GIP+DE YLQ RL VL+ EEKKSL  G+L V ECYYLMGTVDPT  L   EVCVIL +G
Sbjct: 643  AGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNG 702

Query: 233  QLSGNVLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDF 54
            Q++G VLVY+NPGLHFGD+HV+ A YVE+LV  VGNAKYAIFF +KGPRS+ADEIA  DF
Sbjct: 703  QINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDF 762

Query: 53   DGDMYWVSRNPQLLESF 3
            DGDMYWVSRN QLLE F
Sbjct: 763  DGDMYWVSRNSQLLEYF 779


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  521 bits (1342), Expect = e-145
 Identities = 273/494 (55%), Positives = 342/494 (69%), Gaps = 16/494 (3%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGN-----EGDRDCSSSP-VYHRIRKEGILVGLRRFQFFVFKD 1275
            THL RVLGDD VL VKF+        G+ + S S  ++ RI K+GILVGLRR+ FFVFKD
Sbjct: 224  THLRRVLGDDKVLTVKFAEEMVDERRGEFNLSRSKNIFRRIAKDGILVGLRRYHFFVFKD 283

Query: 1274 GGKEQKKKQMQTSSFASSVKCYFVCLESSG---------LHDKSISEARSHFMHIHNISS 1122
            GGKE+K+K   T+     VKCYFVC++S           L +K+I EARS FM +H + +
Sbjct: 284  GGKEEKRKNANTTG----VKCYFVCMKSDAESDMHTPYILSNKTIQEARSMFMDVHTVPN 339

Query: 1121 MPKYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFI 942
            + KYM R SLILSKT K+++D  SVNIE I D+PCLD +   V +Q+G  LIHTDGTGFI
Sbjct: 340  LAKYMARFSLILSKTIKLEVDLGSVNIERINDKPCLDNHNEIVYDQNGQCLIHTDGTGFI 399

Query: 941  SEDLALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYD 762
            SEDL     +NI K +Y      +  L+      K   D+ I+   GD  LL Q RLFYD
Sbjct: 400  SEDLMSKFSKNIFKERYLKQKKVETCLNGMELNAKSVLDEEIKYVSGDLHLLIQFRLFYD 459

Query: 761  GAAAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKY 582
            G A KGT+LVNK LP NTI +RPSM+KVE D       S NS E+V TSN+P+ + LS+Y
Sbjct: 460  GCAVKGTVLVNKLLPPNTIQVRPSMVKVERDTDFSRLPSFNSFEMVGTSNRPRGAALSRY 519

Query: 581  LLALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEM-DNFLVPRMILSGI 405
            L+ LL++GGVP+  FM L+  AL+D QNV Y+K  ALT A++Y E+ DN LV RMI  G+
Sbjct: 520  LITLLSHGGVPKSCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGL 579

Query: 404  PIDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLS 225
            P++EPYLQ RL +LM EE+K L  GK+ +   YYLMGT DPTG L  +EVC+IL+ GQ+S
Sbjct: 580  PLEEPYLQHRLSILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQIS 639

Query: 224  GNVLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGD 45
            G VLVY++PGLHFGD+HV  ATY+E+LV  VGNAK+AIFF T+GPRS ADEIAN DFDGD
Sbjct: 640  GKVLVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGD 699

Query: 44   MYWVSRNPQLLESF 3
            MYW+S NP+LL  F
Sbjct: 700  MYWISTNPELLHYF 713


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  515 bits (1327), Expect = e-143
 Identities = 267/491 (54%), Positives = 342/491 (69%), Gaps = 13/491 (2%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSP---VYHRIRKEGILVGLRRFQFFVFKDGGK 1266
            THLH+VLGD+NVL VKF+  + +    S+     Y RI K GI+VGLRR+QFFVFKD GK
Sbjct: 245  THLHKVLGDENVLTVKFADVQKNSSTYSNDRYSAYKRIAKNGIMVGLRRYQFFVFKDVGK 304

Query: 1265 EQKKKQMQTSSFASSVKCYFVCLESSGLHD---------KSISEARSHFMHIHNISSMPK 1113
             +KKK   T+     VKCYF+  +S+  +D         K+I+EAR HFMH+H + S+ K
Sbjct: 305  AEKKKDFSTNG----VKCYFIRTDSTAANDMGKAYIFSGKTINEARMHFMHVHTLPSLAK 360

Query: 1112 YMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISED 933
            YM R SLILSKT K+++D   +  + IK+  C DQN N V +++ +  +H+DGTG+ISED
Sbjct: 361  YMARFSLILSKTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISED 420

Query: 932  LALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIG-DPPLLTQCRLFYDGA 756
            LA +C  NI KGK  S                    K+I+   G DPPLL Q R+FYDG 
Sbjct: 421  LARMCPVNIFKGKCLS-------------------KKNIQESCGQDPPLLIQFRMFYDGN 461

Query: 755  AAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLL 576
            A KGT L+NKKLP  T+ +RPSMIKV  D  L N  + NSLE+VTTSN PK + LS+ L+
Sbjct: 462  AVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTFNSLEVVTTSNPPKRTKLSRNLV 521

Query: 575  ALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPID 396
            ALL+YGGVP E+F++LL   +E+ + +  NK AAL  AL + +MD+    +MIL GIP+D
Sbjct: 522  ALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAALNHGDMDDQNAAQMILVGIPLD 581

Query: 395  EPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNV 216
            EP+L+DRL +L N EK  L  G+LPV+E YYLMGTVDPTG L  DEVCVILE GQ+SG+V
Sbjct: 582  EPHLKDRLSILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGDV 641

Query: 215  LVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYW 36
            LVY+NPG+HFGD+HV+KATYV+ L  +VGN+KYA+FFP KGPRSL DEIA  DFDGDMY+
Sbjct: 642  LVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYF 701

Query: 35   VSRNPQLLESF 3
            +SRNP+LLE F
Sbjct: 702  ISRNPELLEQF 712


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  512 bits (1318), Expect = e-142
 Identities = 261/490 (53%), Positives = 336/490 (68%), Gaps = 12/490 (2%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSP---VYHRIRKEGILVGLRRFQFFVFKDGGK 1266
            THLH+VLGD+NVL VKF+    +    S+     Y  I K GI++GLRR+QFFVFKDGGK
Sbjct: 237  THLHKVLGDENVLTVKFADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGK 296

Query: 1265 EQKKKQMQTSSFASSVKCYFVCLESSGLHD---------KSISEARSHFMHIHNISSMPK 1113
            E+KKK + T      VKCYF+  +S+   D         KSI EAR HFMH+H   ++  
Sbjct: 297  EEKKKDLSTKK----VKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLAN 352

Query: 1112 YMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISED 933
            YM R SLILSKT  +++D   +  + I D  C DQ+G  V +++    IH+DGTG+ISED
Sbjct: 353  YMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISED 412

Query: 932  LALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAA 753
            LA +C  NI KGK    +  +   ++                  DPPLL Q R+FYDG A
Sbjct: 413  LARMCPLNIFKGKCLRSENIQEACNQ------------------DPPLLIQFRMFYDGYA 454

Query: 752  AKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLA 573
             KGT L+NKKL   T+ +RPSMIKV  DP L N  + N+LE+VTTSN P+ + LSK L+A
Sbjct: 455  VKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVA 514

Query: 572  LLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDE 393
            LL+YGG+P E+F+++L   LE+++++ YNKHAAL VAL Y EMD+    +MIL GIP+DE
Sbjct: 515  LLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVGIPLDE 574

Query: 392  PYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVL 213
            P+L++ L +L+  EK  L  G+LPV+E YYLMGTVDPTG L  DEVCVILE GQ+SG VL
Sbjct: 575  PHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVL 634

Query: 212  VYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWV 33
            VY+NPGLHFGD+H++KATYV+ L  +VGN+KYA+FFP KGPRSL DEIA  DFDGDMY++
Sbjct: 635  VYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFI 694

Query: 32   SRNPQLLESF 3
            SRNP+LLE F
Sbjct: 695  SRNPELLEHF 704


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  510 bits (1314), Expect = e-142
 Identities = 263/490 (53%), Positives = 336/490 (68%), Gaps = 12/490 (2%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSP---VYHRIRKEGILVGLRRFQFFVFKDGGK 1266
            THLH+VLGDDNVL VKF+  +      S      Y  I K GI++GLRR+QFFVFKDGGK
Sbjct: 233  THLHKVLGDDNVLTVKFADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGK 292

Query: 1265 EQKKKQMQTSSFASSVKCYFVCLESSGLHD---------KSISEARSHFMHIHNISSMPK 1113
            E+KKK + T      VKCYF+  +S+  +D         KSI EAR HFMH+H   ++  
Sbjct: 293  EEKKKDLSTKK----VKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLAN 348

Query: 1112 YMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISED 933
            YM R SLILSKT  +++D   +  + I D  C DQ+G  V +++    IH+DGTG+ISED
Sbjct: 349  YMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISED 408

Query: 932  LALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAA 753
            LA +C  NI KGK          L   + +E         +   DPPLL Q R+FYDG A
Sbjct: 409  LARMCPLNIFKGK---------CLRSESIQE---------ACYQDPPLLIQFRMFYDGYA 450

Query: 752  AKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLA 573
             KGT L+NKKL   T+ +RPSMIKV  DP L N  + N+LE+VTTSN PK + LSK L+A
Sbjct: 451  VKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVA 510

Query: 572  LLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDE 393
            LL+YGG+P E+F+++L   LE+++++ YNK AAL  AL Y EMD+    +MIL GIP+DE
Sbjct: 511  LLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDE 570

Query: 392  PYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVL 213
            P+L++ L +L+  EK  L  GKLPV+E YYLMGTVDPTG L  DEVCVILE GQ+SG VL
Sbjct: 571  PHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVL 630

Query: 212  VYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWV 33
            VY+NPGLHFGD+H++KATYV+ L  +VGN+K+A+FFP KGPRSL DEIA  DFDGDMY++
Sbjct: 631  VYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFI 690

Query: 32   SRNPQLLESF 3
            SRNP+LLE+F
Sbjct: 691  SRNPELLENF 700


>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
            gi|482565607|gb|EOA29796.1| hypothetical protein
            CARUB_v10012890mg [Capsella rubella]
          Length = 998

 Score =  502 bits (1293), Expect = e-139
 Identities = 263/493 (53%), Positives = 330/493 (66%), Gaps = 15/493 (3%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSS------PVYHRIRKEGILVGLRRFQFFVFKD 1275
            THLH+VLGDDNVL VKF     D  C+ +        Y  I K GI+VGLRR+QFFVFKD
Sbjct: 251  THLHKVLGDDNVLTVKFD----DMSCTETNCNNLYSTYEGIAKNGIMVGLRRYQFFVFKD 306

Query: 1274 GGKEQKKKQMQTSSFASSVKCYFVCLESSGLHDK---------SISEARSHFMHIHNISS 1122
            GGKE KKK          VKCYF+   S+ L D          SI EAR HFMH++N+ S
Sbjct: 307  GGKEGKKKDFSRQG----VKCYFIRTGSTALSDMENPYILDGMSIHEARMHFMHVYNLPS 362

Query: 1121 MPKYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFI 942
               YM R SLILSKT K+++D   +  E I D  C DQ+ + V +++G   IH+DGTG+I
Sbjct: 363  PANYMARFSLILSKTKKLEMDMTGITFEKIDDIHCHDQDNHDVLDKNGKPCIHSDGTGYI 422

Query: 941  SEDLALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYD 762
            SEDLA +C  NI KGK    +  K                       DPPLL Q R+FY 
Sbjct: 423  SEDLARMCPINIFKGKSIRSNNIKGTCGE------------------DPPLLIQFRMFYK 464

Query: 761  GAAAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKY 582
            G A KGT L NKKLP  T+ +RPSMIKV  D  L+N  + NSLE+V TSN PK + LS+ 
Sbjct: 465  GYAVKGTFLSNKKLPPQTVQVRPSMIKVYEDQALLNFSTFNSLEVVNTSNPPKMTRLSRN 524

Query: 581  LLALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIP 402
            L+ALL+YGGVP ++F+N+L K LE+++ + Y++ AA+  A+ Y +MD+     MIL  IP
Sbjct: 525  LIALLSYGGVPNDFFLNILRKTLEESKTIFYSERAAIKAAINYGDMDDQNTAEMILVDIP 584

Query: 401  IDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSG 222
            +DEP+L+DRL +L+  EK +L  G+LP+ E YYLMGTVDPTG L  +EVCVILE GQ+SG
Sbjct: 585  LDEPHLKDRLSILLKTEKNALKEGRLPIGESYYLMGTVDPTGELKENEVCVILETGQISG 644

Query: 221  NVLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDM 42
            NVLVY+NPGLHFGD+HV+KATYV+ L ++VGN+KYA+FFP KGPRSL DEIA  DFDGDM
Sbjct: 645  NVLVYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDM 704

Query: 41   YWVSRNPQLLESF 3
            Y++SRNPQLLE F
Sbjct: 705  YFISRNPQLLEHF 717


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
            gi|482565615|gb|EOA29804.1| hypothetical protein
            CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  497 bits (1280), Expect = e-138
 Identities = 261/490 (53%), Positives = 333/490 (67%), Gaps = 12/490 (2%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRD--CSSSP-VYHRIRKEGILVGLRRFQFFVFKDGGK 1266
            THLH+VLGD+NVL VKF+  + +    CS S   Y  I K GI+VGLRR++FFVFKDGGK
Sbjct: 241  THLHKVLGDENVLTVKFANVQKNSSTYCSDSYFTYKGIAKNGIMVGLRRYKFFVFKDGGK 300

Query: 1265 EQKKKQMQTSSFASSVKCYFVCLESSGLHD---------KSISEARSHFMHIHNISSMPK 1113
            + K K + T       KCYF+  +S+   D         KSI EAR HFMH+H + S+  
Sbjct: 301  DDKNKDVSTKR----AKCYFIRTDSTASIDMEKPYIFSGKSIHEARMHFMHVHTLPSLAN 356

Query: 1112 YMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISED 933
            YM R SLILSKT K+++D   VN EIIKD PC DQ+G  V +++    IH+DGTG+ISED
Sbjct: 357  YMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISED 416

Query: 932  LALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAA 753
            LA +C  NI KGK    D  K    +                  +PPLL Q R+FY+G A
Sbjct: 417  LAQMCPVNIYKGKCLRSDKIKEACGQ------------------EPPLLIQFRMFYNGYA 458

Query: 752  AKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLA 573
             KGT L+NKK+P  T+ +RPSMIKV  D  L N  + N+LE+V TS  PK + LS+ L+A
Sbjct: 459  IKGTFLLNKKIPSRTVQVRPSMIKVLPD-SLPNISTFNTLEVVNTSFPPKRTKLSRNLVA 517

Query: 572  LLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDE 393
            LL+YGG+P E+F+++L   LE+++ + YNK AAL  AL Y EMD+    +MIL+GIP+DE
Sbjct: 518  LLSYGGIPDEFFLDILHNTLEESKAIFYNKRAALNAALSYGEMDDQNAAQMILAGIPLDE 577

Query: 392  PYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVL 213
            P+L+  L   +  EK  L  G+LPV+E YYLMGTVDPTG L  DEVCVILE GQ+SG VL
Sbjct: 578  PHLKTCLSSFLKREKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVL 637

Query: 212  VYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWV 33
            VY+NPGLHFGD+HV+KATYV+ L  +VGN+K+A+FFP KGPRSL DEIA  DFDGD+Y++
Sbjct: 638  VYRNPGLHFGDIHVLKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDIYFI 697

Query: 32   SRNPQLLESF 3
            SRNP+LLE F
Sbjct: 698  SRNPELLEHF 707


>gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
          Length = 1155

 Score =  492 bits (1267), Expect = e-136
 Identities = 258/513 (50%), Positives = 351/513 (68%), Gaps = 35/513 (6%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSPV---YHRIRKEGILVGLRRFQFFVFKDGGK 1266
            THLH+V+GDDNVL+VKF G   D     S     YH++ ++GI++GLRR++FFV+KDGGK
Sbjct: 385  THLHKVVGDDNVLVVKFMGKLSDTKTDFSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGK 444

Query: 1265 EQKKKQMQT---SSFASSVKCYFVCLESSG-------LHDKSISEARSHFMHIHNISSMP 1116
            E+K KQ +    +   S V+CYFV  ES         L  +++ +AR  FMHI +  ++ 
Sbjct: 445  EEKLKQEKIEDKNKCTSPVRCYFVRTESGWNMDEPYILSGRTVGQARELFMHISSAPTLA 504

Query: 1115 KYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISE 936
            KYM R +LILSKT  +  D ++V +  IKD+PC+D++GN V ++D ++LIHTDGTG +S 
Sbjct: 505  KYMARFALILSKTITLDADLSAVYVRRIKDEPCMDRHGNVV-HKDQELLIHTDGTGLVSV 563

Query: 935  DLALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGA 756
            DLAL C  +I KGK+    G     D +    +P+  K  RS   + PLL Q RLFY+G+
Sbjct: 564  DLALNCPTSIFKGKFLKPQGIA-TCDESETVMRPNSLKRHRSLTAEHPLLMQFRLFYNGS 622

Query: 755  AAKGTLLVNKKLPFNTIHIRPSMIKVESDPKL-----VNAV----------------SAN 639
            A KGT+LV+++LP  TI IRPSM+K+E+ P+L     VN+                 S N
Sbjct: 623  AVKGTVLVDRRLPPATILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVN 682

Query: 638  SLEIVTTSNKPKNSCLSKYLLALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVAL 459
            S EIV+TSN+P+ +  S++L+ LL YGGVP+EYF+ LL  A+E A+N  Y+   AL +A 
Sbjct: 683  SFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAF 742

Query: 458  RYSEMDNFLVPRMILSGIPIDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPT 279
             Y++M++ +  RMILSGIP++E YLQ RL  +  +E+K +  GK+P+ ECYYLM T DPT
Sbjct: 743  SYADMEDSMSARMILSGIPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPT 802

Query: 278  GILNRDEVCVILEDGQLSGNVLVYKNPGLHFGDVHVMKATYVEEL-VNFVGNAKYAIFFP 102
            G L  +EVCVILE+GQ SG+VLVYK+PGLHFGD+HV+KATY+ +L   +VG AKYAI FP
Sbjct: 803  GTLRPNEVCVILENGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFP 862

Query: 101  TKGPRSLADEIANSDFDGDMYWVSRNPQLLESF 3
              GPRSLADE+ANSDFDGD+YWVS+NP+LLE F
Sbjct: 863  ISGPRSLADEMANSDFDGDIYWVSKNPKLLEHF 895


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  490 bits (1262), Expect = e-136
 Identities = 267/490 (54%), Positives = 340/490 (69%), Gaps = 14/490 (2%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRD----CSSSPVYHRIRKEGILVGLRRFQFFVFKDGG 1269
            T L + LGDDNVL+VKF+  E  R     C + P Y ++ +EGILVGLRR++FFVFKDGG
Sbjct: 646  TLLQKELGDDNVLMVKFAKEEVQRGQSGACHNYPTYMKVAREGILVGLRRYRFFVFKDGG 705

Query: 1268 KEQKKKQMQTSSFASSVKCYFVCLESSGLHDKSIS---------EARSHFMHIHNISSMP 1116
             E+KKK    +  +S VKCYFV + S    DK +          EAR  FMH H ++S+ 
Sbjct: 706  NEEKKK----NPTSSPVKCYFVRVASDAAIDKGVYYRLSHMTMYEARCLFMHAHTLASID 761

Query: 1115 KYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISE 936
             YM R SLILSKT  ++ D++ V +EII ++ CLD++GN +  +D   LIHTDGTGFISE
Sbjct: 762  NYMARFSLILSKTMSLKADWSLVKVEIIDEEYCLDESGNCIY-RDEKPLIHTDGTGFISE 820

Query: 935  DLALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGA 756
            DLALLC +   KG++ S +  K + D +  ++   +   +R+   +PPLL QCRLF++G+
Sbjct: 821  DLALLCPKIEAKGQWISDEHMKGLPDPDELDDTGKNRAGLRTE--EPPLLIQCRLFHNGS 878

Query: 755  AAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLL 576
            A+KGTLLVNKKL  N I IRPSM+KV++DP + N  + NSLEIV TS  P+N+ LS+ L+
Sbjct: 879  ASKGTLLVNKKLQPNRIQIRPSMLKVKTDPVISNNQTLNSLEIVGTSTPPRNTHLSRILI 938

Query: 575  ALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEM-DNFLVPRMILSGIPI 399
            ALL +GGVP+E+FM +L KALED+  V   K AAL VA +Y EM DNFL   MI  GIP+
Sbjct: 939  ALLVHGGVPEEFFMQILNKALEDSHGVFCKKRAALKVAEKYGEMDDNFLGRLMISFGIPL 998

Query: 398  DEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGN 219
            +E YL+ RL VLM EE  SL  G+L + + Y LMGT DPTG L  DEVC    DGQLSG 
Sbjct: 999  EESYLRYRLSVLMKEENNSLRKGRLYIPDSYNLMGTADPTGTLKEDEVC----DGQLSGK 1054

Query: 218  VLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMY 39
            VLVY+ PGLH GD+HV+KATYV+E+   VGNAKY IFF  KGPRS+ADE+   DFDGD+Y
Sbjct: 1055 VLVYRYPGLHIGDIHVLKATYVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDLY 1114

Query: 38   WVSRNPQLLE 9
            WVSRNPQLLE
Sbjct: 1115 WVSRNPQLLE 1124


>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 911

 Score =  489 bits (1260), Expect = e-136
 Identities = 262/488 (53%), Positives = 340/488 (69%), Gaps = 10/488 (2%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSPVYHRIRKEGILVGLRRFQFFVFKDGGKEQK 1257
            THL R LGDDNVLLVKF     D  C++  V     +EGILVGLRR++FFV+KD  KE+K
Sbjct: 261  THLQRALGDDNVLLVKFVE---DTSCANMIV-----EEGILVGLRRYRFFVYKDD-KEKK 311

Query: 1256 KKQMQTSSFASSVKCYFVCLESSG---------LHDKSISEARSHFMHIHNISSMPKYMP 1104
            K         +S+KCYFV  ES              K IS+AR  FMH+H +S+M KY  
Sbjct: 312  KSPAMMKKKTASLKCYFVRFESIETCNDGGSYVFSTKRISQARCQFMHVHMVSNMAKYAA 371

Query: 1103 RLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISEDLAL 924
            RLSLILSKT K+Q++ ASV IE I+D  C D+NG  ++++DG+  IHTDGTGFISEDLA+
Sbjct: 372  RLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPRIHTDGTGFISEDLAM 431

Query: 923  LCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAAAKG 744
             C ++  K +Y   +  +  +D     +  ++ +   S+  +PPLL QCRLF++G A KG
Sbjct: 432  HCPKDFVKAEYIKDENYENFVD---IVDLDAERRESVSWNREPPLLMQCRLFFNGCAVKG 488

Query: 743  TLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLALLA 564
            T LVN+K+    IHIRPSM+KVE DP + +  + +SLEIV  S++P  + LSK L++LL+
Sbjct: 489  TFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISHRPNKAYLSKNLISLLS 548

Query: 563  YGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDN-FLVPRMILSGIPIDEPY 387
            YGGV +EYFM LL  ALE+ + V+  K AAL V + Y EMD+  L  RMI SGIP++EP+
Sbjct: 549  YGGVQKEYFMELLGSALEETKQVYLRKRAALKVVINYREMDDDCLTARMISSGIPLNEPH 608

Query: 386  LQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVLVY 207
            L+ RL  L   E+  L GGKLP+S+ +YLMGT DPTG+L  +EVCVIL++GQ+SG VLVY
Sbjct: 609  LRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQISGRVLVY 668

Query: 206  KNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWVSR 27
            +NPGLHFGDVHVMKA YVEEL + VG+AKY IFF TKGPRS A EIAN DFDGDMYWVS 
Sbjct: 669  RNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDMYWVSI 728

Query: 26   NPQLLESF 3
            N ++++S+
Sbjct: 729  NRKVVDSY 736


>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
            arietinum]
          Length = 997

 Score =  489 bits (1260), Expect = e-136
 Identities = 265/496 (53%), Positives = 345/496 (69%), Gaps = 18/496 (3%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSPV-----YHRIRKEGILVGLRRFQFFVFKDG 1272
            THL + LGDDNVLLVKF+ ++  R   +S       Y +  KEG+ VGLR ++FFVFK G
Sbjct: 232  THLQKSLGDDNVLLVKFAEDQYARKSETSAQKAAKHYEKFGKEGLRVGLRLYRFFVFKVG 291

Query: 1271 GKEQKKKQMQTSSFASSVKCYFVCLESSG---------LHDKSISEARSHFMHIHNISSM 1119
            GKE+KKK   TSS    VKCYFV  ESS          L ++++ E+RS FMH H + ++
Sbjct: 292  GKEEKKKDPTTSS----VKCYFVRTESSCSTDERESYILSNRTMFESRSLFMHAHMLPNI 347

Query: 1118 PKYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFIS 939
             KYM R SLILSKT K+ +D+ +V+++ I D  C D++GNTV + +   ++ TDGTGFIS
Sbjct: 348  DKYMARFSLILSKTYKLNVDWTTVSVKTIPDVCCQDEHGNTVYHNEKRCIL-TDGTGFIS 406

Query: 938  EDLALLCQRNIRKGKYTSLDGDKRVLDRNAAEE--KPSDDKSIRSYIGDPPLLTQCRLFY 765
            EDLA+LC  N+ KG        K + +    E+  K   + ++  +   PPLL QCRLF+
Sbjct: 407  EDLAVLCPNNVLKGSNLKNTHIKEISNLVKLEDMSKAMGEAALSKH--QPPLLIQCRLFH 464

Query: 764  DGAAAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSK 585
             G A KGTLLVNKKL  +TI +RPSMIKV +DP L N  S NS+E+V TS+KP  + LSK
Sbjct: 465  MGCAMKGTLLVNKKLSPSTIQVRPSMIKVMTDPSLSNIQSLNSMEVVNTSHKPNRAYLSK 524

Query: 584  YLLALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGI 405
            YL+ALL+YG VP E+FM++L   LEDA +++ NK AAL  +L Y+EMD+F    MIL GI
Sbjct: 525  YLIALLSYGRVPNEFFMDVLKSNLEDAGHIYTNKRAALRASLNYAEMDDFNAAGMILCGI 584

Query: 404  PIDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPT--GILNRDEVCVILEDGQ 231
            P+DEP+LQ  L  L+  EK  L  GKL V +C+YLMGTVDPT    L  ++VC+I E+GQ
Sbjct: 585  PLDEPFLQHYLSKLVKLEKNKLRTGKLYVEDCFYLMGTVDPTEGHCLEANQVCIIHENGQ 644

Query: 230  LSGNVLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFD 51
            ++G+VLVY+NPGLHFGD+H+M+ATYVE L ++VG+ KYAIFFP  GPRS+ADEIA  DFD
Sbjct: 645  ITGDVLVYRNPGLHFGDIHIMQATYVEGLESYVGHGKYAIFFPCVGPRSVADEIAGGDFD 704

Query: 50   GDMYWVSRNPQLLESF 3
            GDMYWVS+NPQLLE F
Sbjct: 705  GDMYWVSKNPQLLECF 720


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  489 bits (1258), Expect = e-135
 Identities = 255/489 (52%), Positives = 333/489 (68%), Gaps = 11/489 (2%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEG-DRDCSSS-PVYHRIRKEGILVGLRRFQFFVFKDGGKE 1263
            THLH+VLGDDNVL VKF    G +  C+     Y  I K GI+VGLRR++FFVFKDGGKE
Sbjct: 238  THLHKVLGDDNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKE 297

Query: 1262 QKKKQMQTSSFASSVKCYFVCLESSGLHD---------KSISEARSHFMHIHNISSMPKY 1110
            +KKK + T      VKCYF+  +S+   D         KS+ EAR HFMH++ +SS+P Y
Sbjct: 298  EKKKDVSTKG----VKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNY 353

Query: 1109 MPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFISEDL 930
            M R SLILSKT  +++D   +  E I D  C DQ+   V +++G   IH+DGTG+ISEDL
Sbjct: 354  MSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDL 413

Query: 929  ALLCQRNIRKGKYTSLDGDKRVLDRNAAEEKPSDDKSIRSYIGDPPLLTQCRLFYDGAAA 750
            A +C  NI KGK          +  N  + K  + +       +PPLL Q R+FY+G A 
Sbjct: 414  ARMCPVNIFKGKS---------MRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAV 464

Query: 749  KGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSKYLLAL 570
            KGT L NKKLP  T+ +RPSMIKV  D  L N  + NSLE+VTTSN P+ + LS+ L+AL
Sbjct: 465  KGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVAL 524

Query: 569  LAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGIPIDEP 390
            L+YGGVP ++F+N+L   LE+++ + Y++ AA   A+ Y   D+     MIL GIP+DEP
Sbjct: 525  LSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTADMILVGIPLDEP 582

Query: 389  YLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLSGNVLV 210
            YL+DRL  L+  E+ +L  G+ P+ E YY+MGTVDPTG L  +E+CVIL  GQ+SG+VLV
Sbjct: 583  YLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLV 642

Query: 209  YKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGDMYWVS 30
            Y+NPGLHFGD+HV+KATYV+ L ++VGNAK+A+FFP KGPRSL DEIA  DFDGDMY++S
Sbjct: 643  YRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFIS 702

Query: 29   RNPQLLESF 3
            RNP+LLE F
Sbjct: 703  RNPKLLEHF 711


>ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
            gi|561026288|gb|ESW24973.1| hypothetical protein
            PHAVU_004G1764001g, partial [Phaseolus vulgaris]
          Length = 689

 Score =  484 bits (1247), Expect = e-134
 Identities = 262/489 (53%), Positives = 338/489 (69%), Gaps = 16/489 (3%)
 Frame = -1

Query: 1436 THLHRVLGDDNVLLVKFSGNEGDRDCSSSP-----VYHRIRKEGILVGLRRFQFFVFKDG 1272
            THL R LGDDNVLLVKF+ N    +  +S      +Y +  KEGI VGLR ++FFVFKDG
Sbjct: 207  THLQRSLGDDNVLLVKFAENGIANNIRTSAEEAYRLYGKFGKEGINVGLRLYRFFVFKDG 266

Query: 1271 GKEQKKKQMQTSSFASSVKCYFVCLESSG---------LHDKSISEARSHFMHIHNISSM 1119
            GKE+KKK   +SS    VKCYFV ++S           L +K++SEAR  FMH H + S+
Sbjct: 267  GKEEKKKDPTSSS----VKCYFVRMQSCWSIDGSANYILSNKTVSEARGLFMHAHLLPSL 322

Query: 1118 PKYMPRLSLILSKTTKIQLDFASVNIEIIKDQPCLDQNGNTVRNQDGDILIHTDGTGFIS 939
             KYM R SLILSKT K+ +D A+VN++ I+D  C D+NGN + + +   ++ TDGTGFIS
Sbjct: 323  DKYMARFSLILSKTFKLNIDLATVNVQTIQDVYCQDENGNIIYDNEKPRIL-TDGTGFIS 381

Query: 938  EDLALLCQRNIRKGKYTSLDGDKRVLDRNAAEE--KPSDDKSIRSYIGDPPLLTQCRLFY 765
             DLALLC  ++ KG     +  + + +    E+  K   +  ++     PPLL QCRLF+
Sbjct: 382  GDLALLCPNSVCKGNNLENNYIQEINNLLELEDMCKEMGETELKLTTHQPPLLIQCRLFH 441

Query: 764  DGAAAKGTLLVNKKLPFNTIHIRPSMIKVESDPKLVNAVSANSLEIVTTSNKPKNSCLSK 585
             G+A KGTLLVNKKLP  TIH+RPSMIKVE+D  L N  S NSLEIV TS KP  + LSK
Sbjct: 442  MGSAIKGTLLVNKKLPPRTIHVRPSMIKVETDLSL-NMQSINSLEIVNTSIKPNRTYLSK 500

Query: 584  YLLALLAYGGVPQEYFMNLLTKALEDAQNVHYNKHAALTVALRYSEMDNFLVPRMILSGI 405
             L+ALL+YGGVP E+F +LL   LE+A +V  NK  AL  ++ +  MD +    MIL GI
Sbjct: 501  NLIALLSYGGVPNEFFKSLLESNLEEANHVFSNKRVALRASVNHGNMDEYNAAGMILCGI 560

Query: 404  PIDEPYLQDRLRVLMNEEKKSLMGGKLPVSECYYLMGTVDPTGILNRDEVCVILEDGQLS 225
            P DEP+LQ RL +L  EEKK L GGKL + +C+YLMGTVDPTG L + +VC+I ++GQ++
Sbjct: 561  PQDEPFLQYRLSILAREEKKKLRGGKLYIPDCFYLMGTVDPTGCLEKGQVCIIHQNGQIT 620

Query: 224  GNVLVYKNPGLHFGDVHVMKATYVEELVNFVGNAKYAIFFPTKGPRSLADEIANSDFDGD 45
            G+VLVY+NPGLHFGD+H+M AT VEEL ++VG+ KYAIFFP  G RS+ADEIA  DFDGD
Sbjct: 621  GDVLVYRNPGLHFGDIHIMCATRVEELESYVGHNKYAIFFPRVGSRSVADEIAGGDFDGD 680

Query: 44   MYWVSRNPQ 18
            +YWVS++PQ
Sbjct: 681  LYWVSKHPQ 689