BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00035732
         (708 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMS46394.1| DNA-directed RNA polymerase II subunit RPB3-A [Tr...    79   6e-22
gb|EMT18475.1| DNA-directed RNA polymerase II subunit RPB3-A [Ae...    79   6e-22
gb|EMT28290.1| DNA-directed RNA polymerase II subunit RPB3-A [Ae...    79   6e-22
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...    79   8e-22
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...    77   2e-21
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...    77   2e-21
gb|AFK41039.1| unknown [Medicago truncatula]                           77   2e-21
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...    77   4e-21
ref|XP_007042502.1| DNA-directed RNA polymerase family protein [...    77   4e-21
ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phas...    75   1e-20
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...    76   1e-20
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...    76   1e-20
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...    75   1e-20
ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II su...    75   5e-20
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...    72   7e-20
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]    72   7e-20
emb|CBI40277.3| unnamed protein product [Vitis vinifera]               72   7e-20
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...    72   2e-19
dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopo...    71   2e-19
gb|ADE77570.1| unknown [Picea sitchensis]                              71   2e-19

>gb|EMS46394.1| DNA-directed RNA polymerase II subunit RPB3-A [Triticum urartu]
          Length = 315

 Score = 79.3 bits (194), Expect(2) = 6e-22
 Identities = 37/45 (82%), Positives = 42/45 (93%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQVSHV 221
           +YEPDI INE++M TLTLEEKQSWVESSPTKVFDIDP+TQQV+ V
Sbjct: 189 MYEPDICINEELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTVV 233



 Score = 51.6 bits (122), Expect(2) = 6e-22
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMY 190


>gb|EMT18475.1| DNA-directed RNA polymerase II subunit RPB3-A [Aegilops tauschii]
          Length = 255

 Score = 79.3 bits (194), Expect(2) = 6e-22
 Identities = 37/45 (82%), Positives = 42/45 (93%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQVSHV 221
           +YEPDI INE++M TLTLEEKQSWVESSPTKVFDIDP+TQQV+ V
Sbjct: 129 MYEPDICINEELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIV 173



 Score = 51.6 bits (122), Expect(2) = 6e-22
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 102 ELRLRAIARKGIGKDHAKWSPAATVTFMY 130


>gb|EMT28290.1| DNA-directed RNA polymerase II subunit RPB3-A [Aegilops tauschii]
          Length = 192

 Score = 79.3 bits (194), Expect(2) = 6e-22
 Identities = 36/45 (80%), Positives = 42/45 (93%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQVSHV 221
           +YEPDI IN+++M TLTLEEKQSWVESSPTKVFDIDP+TQQV+ V
Sbjct: 66  MYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIV 110



 Score = 51.6 bits (122), Expect(2) = 6e-22
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 39  ELRLRAIARKGIGKDHAKWSPAATVTFMY 67


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score = 79.0 bits (193), Expect(2) = 8e-22
 Identities = 36/42 (85%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEPDIHINED+M +L+LEEKQSWVESSPTKVFDIDP TQQV
Sbjct: 188 MYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQV 229



 Score = 51.6 bits (122), Expect(2) = 8e-22
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMY 189


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cicer arietinum]
          Length = 319

 Score = 77.4 bits (189), Expect(2) = 2e-21
 Identities = 33/42 (78%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEPDIHINED+M +LTLEEK+ WV+SSPT+VFDIDP+TQQV
Sbjct: 189 MYEPDIHINEDLMESLTLEEKREWVDSSPTRVFDIDPVTQQV 230



 Score = 51.6 bits (122), Expect(2) = 2e-21
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMY 190


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
           gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
           [Medicago truncatula] gi|355508950|gb|AES90092.1|
           DNA-directed RNA polymerase II subunit RPB3-A [Medicago
           truncatula]
          Length = 318

 Score = 77.4 bits (189), Expect(2) = 2e-21
 Identities = 33/42 (78%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEPDIHINED+M +LTLEEK+ WV+SSPT+VFDIDP+TQQV
Sbjct: 188 MYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQV 229



 Score = 51.6 bits (122), Expect(2) = 2e-21
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMY 189


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score = 77.4 bits (189), Expect(2) = 2e-21
 Identities = 33/42 (78%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEPDIHINED+M +LTLEEK+ WV+SSPT+VFDIDP+TQQV
Sbjct: 188 MYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQV 229



 Score = 51.6 bits (122), Expect(2) = 2e-21
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMY 189


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
           [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
           DNA-directed RNA polymerase II 36 kDa polypeptide B
           family protein [Populus trichocarpa]
          Length = 323

 Score = 76.6 bits (187), Expect(2) = 4e-21
 Identities = 34/42 (80%), Positives = 39/42 (92%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINED+M TLTLEEK SW+ESSPTKVFDID +TQQV
Sbjct: 193 MYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQV 234



 Score = 51.6 bits (122), Expect(2) = 4e-21
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 166 ELRLRAIARKGIGKDHAKWSPAATVTFMY 194


>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
           gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
           family protein [Theobroma cacao]
          Length = 318

 Score = 76.6 bits (187), Expect(2) = 4e-21
 Identities = 36/42 (85%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINEDMM TLTLEEKQS+VESSPT+VFDIDP TQQV
Sbjct: 188 MYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQV 229



 Score = 51.6 bits (122), Expect(2) = 4e-21
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMY 189


>ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
           gi|561031186|gb|ESW29765.1| hypothetical protein
           PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score = 75.1 bits (183), Expect(2) = 1e-20
 Identities = 31/42 (73%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IH+NED+M TLTLEEK+ WV+SSPT+VF+IDP+TQQV
Sbjct: 188 MYEPEIHLNEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQV 229



 Score = 51.6 bits (122), Expect(2) = 1e-20
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMY 189


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Glycine max]
          Length = 320

 Score = 75.9 bits (185), Expect(2) = 1e-20
 Identities = 32/42 (76%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINED+M TLTLEEK+ WV+SSPT+VF+IDP+TQQV
Sbjct: 190 MYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQV 231



 Score = 50.4 bits (119), Expect(2) = 1e-20
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           EL+LRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 163 ELKLRAIARKGIGKDHAKWSPAATVTFMY 191


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Glycine max]
          Length = 319

 Score = 75.9 bits (185), Expect(2) = 1e-20
 Identities = 32/42 (76%), Positives = 40/42 (95%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINED+M TLTLEEK+ WV+SSPT+VF+IDP+TQQV
Sbjct: 189 MYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQV 230



 Score = 50.4 bits (119), Expect(2) = 1e-20
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           EL+LRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 162 ELKLRAIARKGIGKDHAKWSPAATVTFMY 190


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score = 74.7 bits (182), Expect(2) = 1e-20
 Identities = 34/42 (80%), Positives = 39/42 (92%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINED+M +L+LEEKQSWVESSPTKVFDIDP T QV
Sbjct: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230



 Score = 51.6 bits (122), Expect(2) = 1e-20
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMY 190


>ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Brachypodium distachyon]
          Length = 330

 Score = 75.1 bits (183), Expect(2) = 5e-20
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEPDI INE++M TLTLEEK SWVESSPTKVFDIDP TQQV
Sbjct: 204 MYEPDIRINEELMETLTLEEKTSWVESSPTKVFDIDPNTQQV 245



 Score = 49.3 bits (116), Expect(2) = 5e-20
 Identities = 24/29 (82%), Positives = 24/29 (82%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGI KDHA  SP ATVTF Y
Sbjct: 177 ELRLRAIARKGIAKDHAKWSPAATVTFMY 205


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score = 72.4 bits (176), Expect(2) = 7e-20
 Identities = 33/42 (78%), Positives = 38/42 (90%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINED+M +LTLEEK SWVESSPTKVFDID  +QQV
Sbjct: 188 MYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQV 229



 Score = 51.6 bits (122), Expect(2) = 7e-20
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMY 189


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score = 72.4 bits (176), Expect(2) = 7e-20
 Identities = 33/42 (78%), Positives = 38/42 (90%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINED+M +LTLEEK SWVESSPTKVFDID  +QQV
Sbjct: 188 MYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQV 229



 Score = 51.6 bits (122), Expect(2) = 7e-20
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 161 ELRLRAIARKGIGKDHAKWSPAATVTFMY 189


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score = 72.4 bits (176), Expect(2) = 7e-20
 Identities = 33/42 (78%), Positives = 38/42 (90%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEP+IHINED+M +LTLEEK SWVESSPTKVFDID  +QQV
Sbjct: 76  MYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQV 117



 Score = 51.6 bits (122), Expect(2) = 7e-20
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 49  ELRLRAIARKGIGKDHAKWSPAATVTFMY 77


>ref|XP_001765827.1| predicted protein [Physcomitrella patens]
           gi|162683004|gb|EDQ69418.1| predicted protein
           [Physcomitrella patens]
          Length = 324

 Score = 72.4 bits (176), Expect(2) = 2e-19
 Identities = 30/41 (73%), Positives = 38/41 (92%)
 Frame = +3

Query: 90  YEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           YEP+IHINE +M TLTLEEKQ W++SSPTKVF++DP++QQV
Sbjct: 193 YEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQV 233



 Score = 50.4 bits (119), Expect(2) = 2e-19
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           EL+LRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 165 ELKLRAIARKGIGKDHAKWSPAATVTFQY 193


>dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopogon]
          Length = 257

 Score = 71.2 bits (173), Expect(2) = 2e-19
 Identities = 31/45 (68%), Positives = 41/45 (91%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQVSHV 221
           +YEPDI INE++M TLTL+EK+SW+ESSPTKVF++D +TQQV+ V
Sbjct: 130 MYEPDIRINEELMDTLTLDEKRSWIESSPTKVFELDNVTQQVTVV 174



 Score = 51.6 bits (122), Expect(2) = 2e-19
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 103 ELRLRAIARKGIGKDHAKWSPAATVTFMY 131


>gb|ADE77570.1| unknown [Picea sitchensis]
          Length = 330

 Score = 70.9 bits (172), Expect(2) = 2e-19
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +3

Query: 87  IYEPDIHINEDMMATLTLEEKQSWVESSPTKVFDIDPITQQV 212
           +YEPDIHINE++M TLTL+EK+ W+ES PTKVFDI P TQQV
Sbjct: 197 MYEPDIHINENLMETLTLDEKREWIESCPTKVFDIHPDTQQV 238



 Score = 51.6 bits (122), Expect(2) = 2e-19
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +2

Query: 2   ELRLRAIARKGIGKDHANRSPTATVTFTY 88
           ELRLRAIARKGIGKDHA  SP ATVTF Y
Sbjct: 170 ELRLRAIARKGIGKDHAKWSPAATVTFMY 198