BLASTX nr result
ID: Papaver27_contig00033836
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00033836
(1776 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 260 9e-89
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 267 5e-82
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 260 6e-82
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 249 3e-81
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 242 8e-81
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 249 4e-79
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 255 9e-77
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 255 9e-77
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 249 1e-76
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 242 4e-76
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 240 2e-75
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 240 2e-75
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 225 2e-75
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 223 9e-75
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 238 6e-73
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 228 3e-71
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 225 6e-68
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga... 208 9e-68
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 233 1e-67
ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660... 187 1e-66
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 260 bits (664), Expect(3) = 9e-89
Identities = 140/397 (35%), Positives = 225/397 (56%)
Frame = +1
Query: 586 KRNHGPPPFRFFNYLTEEKDFLDIVRNVWSEKVIGNPMFILVSKLKKVKHKMISLRRDRF 765
+ + G PF+F N+L ++ F+++V+ W M + +L+ VK + S +F
Sbjct: 237 QHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKF 296
Query: 766 SNVSEAVVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQW 945
S V E ++ + A +A+ + + EK ++ + + +ESI+KQ+SRIQW
Sbjct: 297 SKAHCQVEELRR-KLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQW 355
Query: 946 MDFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPG 1125
+ GDSN++FF +++K R+ RN I+ L+ND G E+ EI E +F+ L G S
Sbjct: 356 LSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLL-GTSSSQ 414
Query: 1126 INNPDAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWS 1305
+ D ++ +S + LV PIT EI AL+ I KAPG DGF S FFK W
Sbjct: 415 LEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWL 474
Query: 1306 IVEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKIL 1485
+++ + + I +FF + + +N T +TL+PKID D+RPI+CC+ +YK ++KIL
Sbjct: 475 VIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKIL 534
Query: 1486 AIRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHT 1665
R++ V+ ++V Q+ FI R I DNILLA E+IR Y+R +C +K+DIRKAY +
Sbjct: 535 TKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDS 594
Query: 1666 VS*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
V + LK +G P +F+ WI C+ T +++L+N
Sbjct: 595 VEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLN 631
Score = 82.0 bits (201), Expect(3) = 9e-89
Identities = 41/120 (34%), Positives = 68/120 (56%)
Frame = +2
Query: 212 TIVLEELLWTDLIAFSGSNDLPWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEA 391
TI ++LW +L F P +IGD+N + + +R+ GN S + +D + +A
Sbjct: 113 TIADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSE-AETSDLRSFVLKA 171
Query: 392 LLFDLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMV 571
L + P +G FY+W+NK IG RI S+ID+ VN+ W++ + ++ GISDHS ++
Sbjct: 172 QLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGISDHSPLI 231
Score = 35.8 bits (81), Expect(3) = 9e-89
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 3 QNKDVVRLGINRN*HFLDNYVNDPSGRIWVGW---NPS*NVCEVTAFCCSRYIFRSYYLQ 173
QN ++ +++NY P GRIWVGW + + NV VT + + SY L
Sbjct: 42 QNSGKIQKKFGNRWSWINNYACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLN 101
Query: 174 EFEVS 188
F+++
Sbjct: 102 MFKMA 106
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 267 bits (682), Expect(3) = 5e-82
Identities = 148/398 (37%), Positives = 225/398 (56%), Gaps = 5/398 (1%)
Frame = +1
Query: 598 GPPPFRFFNYLTEEKDFLDIVRNVWSEK----VIGNPMFILVSKLKKVKHKMISLRRDRF 765
G PF+F N LT+ +DF +V W + + + +F LK +K K+ S+ RDR
Sbjct: 247 GLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMARDRL 306
Query: 766 SNVSEAVVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQW 945
N+S+ EA K++ Q T P + +++ E A S + R+A EE +KQ+S++ W
Sbjct: 307 GNLSKKANEAYKILCAKQHVNLTNPSSMAMEE-ENAAYSRWDRVAILEEKYLKQKSKLHW 365
Query: 946 MDFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPG 1125
GD NT+ FH + R N I + +++G++ + EI E FF +
Sbjct: 366 CQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDF 425
Query: 1126 INNPDAEFIQFSKV-VSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCW 1302
E Q V SD+D SL+ P+T +EI L + S+K+PGPDG+TS FFK W
Sbjct: 426 EGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATW 485
Query: 1303 SIVEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKI 1482
I+ +F +Q+FFT L +N+T L L+PK + D+RPISCCNV+YK ++KI
Sbjct: 486 EIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKI 545
Query: 1483 LAIRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYH 1662
+A R+K VL ++ NQSAF+ R + +N+LLA E++++YH+D T+CA+KIDI KA+
Sbjct: 546 IANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFD 605
Query: 1663 TVS*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
+V +I +G P F+ WI CI+T F+V VN
Sbjct: 606 SVQWPFLINVFTILGFPREFIHWINICITTASFSVQVN 643
Score = 62.8 bits (151), Expect(3) = 5e-82
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Frame = +2
Query: 227 ELLWTDLIAFSGSNDL---PWDVIGDFNEILNFNERIGGNSSSH---FSSMNDFIHCIEE 388
++LW++L S + PW ++GDFNE L+ E S H M DF I
Sbjct: 117 KVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEH--SQSFVHPMVTPGMRDFQQVINY 174
Query: 389 ALLFDLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDH 559
L D+ G +TW NK+ G I+ K+DRVL+N W F++S + F G SDH
Sbjct: 175 CSLTDMAAQGPLFTWCNKR-EHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDH 230
Score = 25.4 bits (54), Expect(3) = 5e-82
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 17/62 (27%)
Frame = +3
Query: 51 LDNYVNDPSGRIWVGW------NPS*NVCEVTA-----------FCCSRYIFRSYYLQEF 179
L NY ++ GRIWV W +P C++ F CS +++ S Y++E
Sbjct: 58 LTNYEHNRRGRIWVLWRKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCS-FVYASNYVEER 116
Query: 180 EV 185
+V
Sbjct: 117 KV 118
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 260 bits (664), Expect(2) = 6e-82
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 6/396 (1%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PFRF+N+L + DF+ +V +W S V+G+ MF + KLK +K+ + + + FSN+ +
Sbjct: 197 PFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKR 256
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
V EA +++ Q + P + A+E A + L + EES Q+SR+ WM GDS
Sbjct: 257 VKEAHNLVLYRQNKTLSDPTIPNA-ALEMEAQRKWLILVKAEESFFCQRSRVTWMGEGDS 315
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTG-AGSPGINNPD 1140
NT +FH R+ N I + +DNGV D I C +FSNL G G P + D
Sbjct: 316 NTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEVGPPMLIQED 375
Query: 1141 AEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEAD 1320
+ + + D L +R +I A SNK GPDGF FFK WS++ +
Sbjct: 376 FDLLLPFRCSHDQKK-ELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTE 434
Query: 1321 FVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCN----VIYKCVTKILA 1488
+ FFTS LL + N T L L+PKI N S + DFRPISC + +YK + ++L
Sbjct: 435 VTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLT 494
Query: 1489 IRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTV 1668
R++ +L ++S QSAF+ GR + +N+LLA E+++ Y+R + +K+D+RKA+ ++
Sbjct: 495 NRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSI 554
Query: 1669 S*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
D II LK +G+PD FV WI CIST F+V VN
Sbjct: 555 RWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVN 590
Score = 73.6 bits (179), Expect(2) = 6e-82
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Frame = +2
Query: 233 LWTDLIAFSGS---NDLPWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFD 403
LW +L+ S S N PW ++GDFN++L E S + M F C+ EA L D
Sbjct: 70 LWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCD 129
Query: 404 LPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVIYV 580
L F G+ +TW NK + K+DR+LVN W S F + F P SDH+S + +
Sbjct: 130 LVFKGNTFTWWNKS-ATRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVII 187
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 249 bits (637), Expect(3) = 3e-81
Identities = 139/393 (35%), Positives = 221/393 (56%), Gaps = 3/393 (0%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PF+FFNYL + DFL++VR+ W + V+G+ MF + KLK +K + R +S + +
Sbjct: 248 PFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKR 307
Query: 784 VVEAKKVMITAQEAI--QTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFG 957
EA +I Q+ P+NAS + +R + L EES +Q+SRI W G
Sbjct: 308 TKEAHDFLIGCQDRTLADPTPINASFELEAER---KWHILTAAEESFFRQKSRISWFAEG 364
Query: 958 DSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGINNP 1137
D NT++FH R N+I +L + NG + D + I C S+F +L P +
Sbjct: 365 DGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQ 424
Query: 1138 DAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEA 1317
+ + S S + L + + ++I AL + NK+ GPDGFT+ FF WSIV A
Sbjct: 425 NDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGA 484
Query: 1318 DFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRM 1497
+ I+ FF+S LL + N T + L+PKI NP+ +DFRPISC N +YK + ++L R+
Sbjct: 485 EVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRL 544
Query: 1498 KYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTVS*D 1677
+ +L ++S QSAF+ GRS+ +N+LLA +++ Y+ + +K+D++KA+ +V +
Sbjct: 545 QRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWE 604
Query: 1678 AIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
+I L+ + +P+ F+ WI CIST F V +N
Sbjct: 605 FVIAALRALAIPEKFINWISQCISTPTFTVSIN 637
Score = 73.6 bits (179), Expect(3) = 3e-81
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Frame = +2
Query: 233 LWTDLIAFSGSN---DLPWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFD 403
LW +++ S D PW V+GDFN++LN E S + +M DF C+ A L D
Sbjct: 121 LWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSD 180
Query: 404 LPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVIYVY 583
L + G+ +TW NK + KIDR+LVN W ++F S F + SDH S + +
Sbjct: 181 LRYKGNTFTWWNKS-HTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLE 239
Query: 584 ENAI 595
E +I
Sbjct: 240 ETSI 243
Score = 29.3 bits (64), Expect(3) = 3e-81
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 48 FLDNYVNDPSGRIWVGWNPS*NVCEV 125
F++NY G+IWV W+PS V V
Sbjct: 59 FVENYAFSDLGKIWVMWDPSVQVVVV 84
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 242 bits (617), Expect(3) = 8e-81
Identities = 134/396 (33%), Positives = 214/396 (54%)
Frame = +1
Query: 589 RNHGPPPFRFFNYLTEEKDFLDIVRNVWSEKVIGNPMFILVSKLKKVKHKMISLRRDRFS 768
R G PF+F N + E+ +FL+ V W+ + + LK VK ++ ++ +
Sbjct: 235 RPQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLNLKAVKRELKQMKTQKIG 294
Query: 769 NVSEAVVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWM 948
E V + + Q + N + K +++ + E+SI++Q+SRI W+
Sbjct: 295 LAHEKVKNLRHQLQDLQSQ-DDFDHNDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITWL 353
Query: 949 DFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGI 1128
GD+N++ F ++VK R N I L ++G + + E+ E F+ L G + +
Sbjct: 354 QQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLL-GTRASTL 412
Query: 1129 NNPDAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSI 1308
D ++ K +S SL+ + EI AL+ IG++KAPG DGF ++FFK W
Sbjct: 413 MGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGS 472
Query: 1309 VEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILA 1488
++ + IQ FF + ++ +N +TL+PK+ + + + +FRPI+CC VIYK ++K+L
Sbjct: 473 IKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLT 532
Query: 1489 IRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTV 1668
RMK ++ ++V+E QS FI GR I DNILLA E+IR Y R +C MK+DIRKAY +V
Sbjct: 533 NRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSV 592
Query: 1669 S*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
+ L G P FV WI C+ST ++VLVN
Sbjct: 593 EWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVN 628
Score = 78.2 bits (191), Expect(3) = 8e-81
Identities = 39/120 (32%), Positives = 68/120 (56%)
Frame = +2
Query: 212 TIVLEELLWTDLIAFSGSNDLPWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEA 391
TI + LW+ L+ D P +IGDFN + + N+R+ G + + DF + ++
Sbjct: 111 TIADRKSLWSGLLQCVQQQD-PMIIIGDFNAVCHSNDRLYGTLVTD-AETEDFQQFLLQS 168
Query: 392 LLFDLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMV 571
L + + +Y+WSN IG R++S+ID+ VN+ W+ ++ + +L PGISDHS ++
Sbjct: 169 NLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHSPLL 228
Score = 31.2 bits (69), Expect(3) = 8e-81
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 3 QNKDVVRLGINRN*HFLDNYVNDPSGRIWVGWNPS 107
QN V+ + ++ +L+NY + RIW+GW P+
Sbjct: 42 QNASKVQGKLGKDWKWLNNYSHSARERIWIGWRPA 76
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 249 bits (635), Expect(2) = 4e-79
Identities = 140/394 (35%), Positives = 219/394 (55%), Gaps = 4/394 (1%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PFRF N+L ++++FL ++ W S V G+ M+ + KLK +K + RD +S++ +
Sbjct: 145 PFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKR 204
Query: 784 VVEAKKVMITAQEAIQTYPL--NASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFG 957
EA ++ AQ + P NA+++A +R + LA E S Q+SR+ W+ G
Sbjct: 205 TKEAHDALLLAQSVLLASPCPSNAAIEAETQR---KWRILAEAEASFFYQRSRVNWLREG 261
Query: 958 DSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFF-SNLFTGAGSPGINN 1134
D N+ +FH R+ N+I L + G + + + C +F SNL + G P
Sbjct: 262 DMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQ 321
Query: 1135 PDAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVE 1314
D + S S + SL P + ++I A + NKA GPDGF+ FF CW I+
Sbjct: 322 ADISNL-LSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIG 380
Query: 1315 ADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIR 1494
+ + I FFTS KLL + N T L L+PKI N S+++DFRPISC N +YK ++K+L R
Sbjct: 381 GEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDR 440
Query: 1495 MKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTVS* 1674
+K L +S +QSAF+ GR +N+LLA E++ Y++ +K+D+RKA+ +V
Sbjct: 441 LKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRW 500
Query: 1675 DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
D I+ L+ + VP+ F WI C+ST F+V++N
Sbjct: 501 DFIVSALRALNVPEKFTCWILECLSTASFSVILN 534
Score = 75.5 bits (184), Expect(2) = 4e-79
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Frame = +2
Query: 218 VLEELLWTDLIAFSGSN---DLPWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEE 388
V ++LW +++ FS D PW V+GDFN+IL+ +E + + F I
Sbjct: 13 VTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRPTRIFRETILL 72
Query: 389 ALLFDLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSS 565
A L DL F G+ +TW NK+ + K+DR+LVN +W + F S F P SDHSS
Sbjct: 73 ASLTDLSFRGNTFTWWNKR-SRAPVAKKLDRILVNDKWTTTFPSSLGLFGEPDFSDHSS 130
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 255 bits (652), Expect(2) = 9e-77
Identities = 135/391 (34%), Positives = 219/391 (56%), Gaps = 1/391 (0%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PF+FFN+L + +DFL++V + W S V+G+ M+ + KLK +K + R +S +
Sbjct: 108 PFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELR 167
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
EA +++IT Q P + S A+E A + L+ EES Q+SR+ W GDS
Sbjct: 168 TKEAHELLITCQNLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDS 226
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGINNPDA 1143
NT +FH V R+ N I SL + NG++ D + I C +++ L SP +
Sbjct: 227 NTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQED 286
Query: 1144 EFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEADF 1323
+ + S + L T DEI A + NK GPDG++ FF+ WSI+ +
Sbjct: 287 MNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEV 346
Query: 1324 VKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRMKY 1503
+ I FF S +LL + N T L L+PK N TI++FRPISC N +YK ++K+L R++
Sbjct: 347 LAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQG 406
Query: 1504 VLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTVS*DAI 1683
+L ++ +QSAF+ GRS+ +N+LLA E++ Y+R + +K+D++KA+ +V + +
Sbjct: 407 LLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFV 466
Query: 1684 ILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
L+ + +P+ ++ WI+ CI+T F + VN
Sbjct: 467 TAALRALAIPERYINWIHQCITTPSFTISVN 497
Score = 60.8 bits (146), Expect(2) = 9e-77
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Frame = +2
Query: 284 VIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFDLPFSGDFYTWSNK-QIGPGR 460
++GDFN++L E S + M DF C+ E L DL F G+ +TW NK I P
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRP-- 58
Query: 461 IISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVIYVYENAI 595
I K+DR+L N W +++ S F SDH S + + N I
Sbjct: 59 IAKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGI 103
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 255 bits (652), Expect(2) = 9e-77
Identities = 135/391 (34%), Positives = 219/391 (56%), Gaps = 1/391 (0%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PF+FFN+L + +DFL++V + W S V+G+ M+ + KLK +K + R +S +
Sbjct: 108 PFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELR 167
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
EA +++IT Q P + S A+E A + L+ EES Q+SR+ W GDS
Sbjct: 168 TKEAHELLITCQNLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDS 226
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGINNPDA 1143
NT +FH V R+ N I SL + NG++ D + I C +++ L SP +
Sbjct: 227 NTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQED 286
Query: 1144 EFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEADF 1323
+ + S + L T DEI A + NK GPDG++ FF+ WSI+ +
Sbjct: 287 MNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEV 346
Query: 1324 VKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRMKY 1503
+ I FF S +LL + N T L L+PK N TI++FRPISC N +YK ++K+L R++
Sbjct: 347 LAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQG 406
Query: 1504 VLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTVS*DAI 1683
+L ++ +QSAF+ GRS+ +N+LLA E++ Y+R + +K+D++KA+ +V + +
Sbjct: 407 LLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFV 466
Query: 1684 ILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
L+ + +P+ ++ WI+ CI+T F + VN
Sbjct: 467 TAALRALAIPERYINWIHQCITTPSFTISVN 497
Score = 60.8 bits (146), Expect(2) = 9e-77
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Frame = +2
Query: 284 VIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFDLPFSGDFYTWSNK-QIGPGR 460
++GDFN++L E S + M DF C+ E L DL F G+ +TW NK I P
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRP-- 58
Query: 461 IISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVIYVYENAI 595
I K+DR+L N W +++ S F SDH S + + N I
Sbjct: 59 IAKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGI 103
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 249 bits (636), Expect(2) = 1e-76
Identities = 137/392 (34%), Positives = 219/392 (55%), Gaps = 2/392 (0%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVWSEKVI-GNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PF+ N+L +F++ +R W G+ MF L K K +K + + R+ +S + +
Sbjct: 246 PFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKR 305
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
VV+A + + T Q + P ++ + +EK A ++A LA EE + Q+SR+ W+ GDS
Sbjct: 306 VVQAAQNLKTCQNNLLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDS 364
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGINNPDA 1143
NT FFH + RR N I L + G + E+ C FF LF + +
Sbjct: 365 NTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGIS 424
Query: 1144 EFIQFSKVVSDSDATSLV-APITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEAD 1320
+ ++ D + L+ A ++ +I + SNK+PGPDG+TS FFK WSIV
Sbjct: 425 QINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPS 484
Query: 1321 FVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRMK 1500
+ +Q FF S +LLG+ N+T +T+VPK N I +FRPISCCN IYK ++K+LA R++
Sbjct: 485 LIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLE 544
Query: 1501 YVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTVS*DA 1680
+L +S +QSAF+ GR + +N+LLA E+++ + + ++ +K+D+RKA+ +V
Sbjct: 545 NILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGF 604
Query: 1681 IILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
II LK P FV WI CI++ F++ V+
Sbjct: 605 IIETLKAANAPPRFVNWIKQCITSTSFSINVS 636
Score = 66.6 bits (161), Expect(2) = 1e-76
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Frame = +2
Query: 233 LWTDL---IAFSGSNDLPWDVIGDFNEILN-FNERIGGNSSSHFSSMNDFIHCIEEALLF 400
LW++L A ++D PW ++GDFN+ L+ + GG+ + M +F C+ + +
Sbjct: 120 LWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITR--GMEEFRECLLTSNIS 177
Query: 401 DLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDH 559
DLPF G+ YTW N Q I KIDR+LVN W+ S F SDH
Sbjct: 178 DLPFRGNHYTWWNNQEN-NPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDH 229
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 242 bits (618), Expect(2) = 4e-76
Identities = 137/404 (33%), Positives = 223/404 (55%), Gaps = 11/404 (2%)
Frame = +1
Query: 598 GPPPFRFFNYLTEEKDFLDIVRNVWSEK----VIGNPMFILVSKLKKVKHKMISLRRDRF 765
G PF+F N +TE + F+ V + W+E + + +F KLK +K + +L ++R
Sbjct: 135 GKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKERL 194
Query: 766 SNVSEAVVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQW 945
N+ + EA + + Q P +S+ E A + + +A EE +KQ+S++ W
Sbjct: 195 GNLVKQTKEAFETLCQKQAMKMANPSPSSMQE-ENEAYAKWDHIAVLEEKFLKQRSKLHW 253
Query: 946 MDFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPG 1125
+D GD N + FH +V R +N+I + +G + ++++I E F
Sbjct: 254 LDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQ------ 307
Query: 1126 INNPDAEFIQFSKV-------VSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSH 1284
+ D E I ++ SDSD L ++ +EI + + ++K+PGPDG+T+
Sbjct: 308 LIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAE 367
Query: 1285 FFKVCWSIVEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIY 1464
F+K W+I+ A+F+ IQ+FF L +N+T L L+PK + D+RPISCCNV+Y
Sbjct: 368 FYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLY 427
Query: 1465 KCVTKILAIRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKID 1644
K ++KI+A R+K VL + NQSAF+ R + +N+LLA EI+++YH+D ++CA+KID
Sbjct: 428 KVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKID 487
Query: 1645 IRKAYHTVS*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
I KA+ +V +I L+ M P F WI CI+T F+V VN
Sbjct: 488 ISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVN 531
Score = 72.0 bits (175), Expect(2) = 4e-76
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Frame = +2
Query: 233 LWTDLIAFSGS---NDLPWDVIGDFNEILNFNERIGGNSSSHFSS-MNDFIHCIEEALLF 400
LW DL S S PW + GDFNEIL+ E + ++ M DF + +
Sbjct: 7 LWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNHCSIT 66
Query: 401 DLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDH 559
DL + G +TWSNK+ I K+DRVLVN W+ F +S + F G SDH
Sbjct: 67 DLAYHGPLFTWSNKREND-LIAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDH 118
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 240 bits (612), Expect(2) = 2e-75
Identities = 143/396 (36%), Positives = 213/396 (53%), Gaps = 6/396 (1%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PFRFFNY DFL ++R W S V G+ M+ + KLK +K + R+ +S++ +
Sbjct: 245 PFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEKR 304
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
V EA +++ Q T P +E A + LA+ EES Q+S I W+ GD+
Sbjct: 305 VSEAHAIVLHRQRITLTNPSVVHA-TLELEATRKWQILAKAEESFFCQKSSISWLYEGDN 363
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISL----ECTSFFSNLFTGA-GSPGI 1128
NT +FH R+ N I L +D G + + I +FF +L G G +
Sbjct: 364 NTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSL 423
Query: 1129 NNPDAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSI 1308
D + S S L + +I A + NKA GPDG++S FFK W +
Sbjct: 424 AQSDMNLL-LSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFV 482
Query: 1309 VEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILA 1488
V + + +Q FF S +LL + N T L L+PKI N S + DFRPISC N +YK + K+L
Sbjct: 483 VGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLT 542
Query: 1489 IRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTV 1668
R+K +L +++S +QSAF+ GR + +N+LLA EI+ Y+ ++ +K+D+RKA+ +V
Sbjct: 543 SRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602
Query: 1669 S*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
D II + + VP+ FV WI CIST F+V+VN
Sbjct: 603 RWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVN 638
Score = 71.6 bits (174), Expect(2) = 2e-75
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Frame = +2
Query: 233 LWTDLIAFSGSNDL---PWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFD 403
LW +L+ + S + W V+GDFN+ILN I N + F C+ ++ L+D
Sbjct: 121 LWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINANIGRKIRA---FRSCLLDSDLYD 177
Query: 404 LPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSS 565
L + G YTW NK + KIDR+LVN W ++F + +F P SDHSS
Sbjct: 178 LVYKGSSYTWWNK-CSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSS 230
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 240 bits (612), Expect(2) = 2e-75
Identities = 143/396 (36%), Positives = 213/396 (53%), Gaps = 6/396 (1%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PFRFFNY DFL ++R W S V G+ M+ + KLK +K + R+ +S++ +
Sbjct: 245 PFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEKR 304
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
V EA +++ Q T P +E A + LA+ EES Q+S I W+ GD+
Sbjct: 305 VSEAHAIVLHRQRITLTNPSVVHA-TLELEATRKWQILAKAEESFFCQKSSISWLYEGDN 363
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISL----ECTSFFSNLFTGA-GSPGI 1128
NT +FH R+ N I L +D G + + I +FF +L G G +
Sbjct: 364 NTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSL 423
Query: 1129 NNPDAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSI 1308
D + S S L + +I A + NKA GPDG++S FFK W +
Sbjct: 424 AQSDMNLL-LSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFV 482
Query: 1309 VEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILA 1488
V + + +Q FF S +LL + N T L L+PKI N S + DFRPISC N +YK + K+L
Sbjct: 483 VGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLT 542
Query: 1489 IRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTV 1668
R+K +L +++S +QSAF+ GR + +N+LLA EI+ Y+ ++ +K+D+RKA+ +V
Sbjct: 543 SRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602
Query: 1669 S*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
D II + + VP+ FV WI CIST F+V+VN
Sbjct: 603 RWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVN 638
Score = 71.6 bits (174), Expect(2) = 2e-75
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Frame = +2
Query: 233 LWTDLIAFSGSNDL---PWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFD 403
LW +L+ + S + W V+GDFN+ILN I N + F C+ ++ L+D
Sbjct: 121 LWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINANIGRKIRA---FRSCLLDSDLYD 177
Query: 404 LPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSS 565
L + G YTW NK + KIDR+LVN W ++F + +F P SDHSS
Sbjct: 178 LVYKGSSYTWWNK-CSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSS 230
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 225 bits (573), Expect(3) = 2e-75
Identities = 136/410 (33%), Positives = 219/410 (53%), Gaps = 10/410 (2%)
Frame = +1
Query: 577 CV*KRNHGPPP----FRFFNYLTEEKDFLDIVRNVWSEK-VIGNPMFILVSKLKKVKHKM 741
C+ ++ PPP F++F++L+ +L + W E ++G+ MF L LK K
Sbjct: 276 CIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCC 335
Query: 742 ISLRRDRFSNVSEAVVEAKKVMITAQEAIQTYPLNASVDAMEKR---ALSNYARLARHEE 912
+L R RFSN+ + ++ +T E IQ L + D + +R A + A E
Sbjct: 336 RTLNRLRFSNIQQRTAQS----LTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALE 391
Query: 913 SIIKQQSRIQWMDFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFF 1092
S +Q+SRI+W+ GD+NT+FFH +V + N I L+ D+G + +I +++
Sbjct: 392 SFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYY 451
Query: 1093 SNLFTGAGSPGINNPDAEFIQ-FSKVVSDSDATSLVAPI-TRDEIIYALSCIGSNKAPGP 1266
S+L G S + E I+ DS S + I + +EI L + NKAPGP
Sbjct: 452 SHLL-GIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGP 510
Query: 1267 DGFTSHFFKVCWSIVEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPIS 1446
DGF FF W+IV++ V I+ FF S L N T +TL+PK+ + FRP++
Sbjct: 511 DGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVA 570
Query: 1447 CCNVIYKCVTKILAIRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTK 1626
CC IYK +T+I++ R+K + V NQ FI GR + +N+LLA E++ N+ D T+
Sbjct: 571 CCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTR 630
Query: 1627 CAMKIDIRKAYHTVS*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
+++DI KAY V+ + +I LK + +P +F+ WI+ CIS+ +++ N
Sbjct: 631 GCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFN 680
Score = 81.6 bits (200), Expect(3) = 2e-75
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Frame = +2
Query: 233 LWTDLIAFSGSNDL---PWDVIGDFNEILNFNERIGGNSSS-HFSSMNDFIHCIEEALLF 400
LW D++ S ++ L PW ++GDFN+I +E N S + M D C+ ++ L
Sbjct: 162 LWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLS 221
Query: 401 DLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVIYV 580
DLP G F+TWSN Q I+ K+DR L N EW ++F + F PG SDH+ +I +
Sbjct: 222 DLPSRGVFFTWSNHQ-QDNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILI 280
Score = 26.2 bits (56), Expect(3) = 2e-75
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 57 NYVNDPSGRIWVGWNPS*NV 116
NY GRIW+ W+PS +V
Sbjct: 103 NYCCSELGRIWIVWDPSISV 122
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 223 bits (568), Expect(3) = 9e-75
Identities = 135/410 (32%), Positives = 219/410 (53%), Gaps = 10/410 (2%)
Frame = +1
Query: 577 CV*KRNHGPPP----FRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKM 741
C+ ++ PPP F++F++L+ +L + W + ++G+ MF L LK K
Sbjct: 233 CIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCC 292
Query: 742 ISLRRDRFSNVSEAVVEAKKVMITAQEAIQTYPLNASVDAMEKR---ALSNYARLARHEE 912
+L R RFSN+ + ++ +T E IQ L + D + +R A + A E
Sbjct: 293 RTLNRLRFSNIQQRTAQS----LTRLEDIQVELLTSPSDTLFRREHVARKQWIFFAAALE 348
Query: 913 SIIKQQSRIQWMDFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFF 1092
S +Q+SRI+W+ GD+NT+FFH +V + N I L+ D+G + +I +++
Sbjct: 349 SFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYY 408
Query: 1093 SNLFTGAGSPGINNPDAEFIQ-FSKVVSDSDATSLVAPI-TRDEIIYALSCIGSNKAPGP 1266
S+L G S + E I+ DS S + I + +EI L + NKAPGP
Sbjct: 409 SHLL-GIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGP 467
Query: 1267 DGFTSHFFKVCWSIVEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPIS 1446
DGF FF W+IV++ V I+ FF S L N T +TL+PK+ + FRP++
Sbjct: 468 DGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVA 527
Query: 1447 CCNVIYKCVTKILAIRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTK 1626
CC IYK +T+I++ R+K + V NQ FI GR + +N+LLA E++ N+ D T+
Sbjct: 528 CCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTR 587
Query: 1627 CAMKIDIRKAYHTVS*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
+++DI KAY V+ + +I LK + +P +F+ WI+ CIS+ +++ N
Sbjct: 588 GCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFN 637
Score = 81.6 bits (200), Expect(3) = 9e-75
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Frame = +2
Query: 233 LWTDLIAFSGSNDL---PWDVIGDFNEILNFNERIGGNSSS-HFSSMNDFIHCIEEALLF 400
LW D++ S ++ L PW ++GDFN+I +E N S + M D C+ ++ L
Sbjct: 119 LWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLS 178
Query: 401 DLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVIYV 580
DLP G F+TWSN Q I+ K+DR L N EW ++F + F PG SDH+ +I +
Sbjct: 179 DLPSRGVFFTWSNHQ-QDNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILI 237
Score = 26.2 bits (56), Expect(3) = 9e-75
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 57 NYVNDPSGRIWVGWNPS*NV 116
NY GRIW+ W+PS +V
Sbjct: 60 NYCCSELGRIWIVWDPSISV 79
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 238 bits (607), Expect(2) = 6e-73
Identities = 135/404 (33%), Positives = 220/404 (54%), Gaps = 11/404 (2%)
Frame = +1
Query: 598 GPPPFRFFNYLTEEKDFLDIVRNVWSEK----VIGNPMFILVSKLKKVKHKMISLRRDRF 765
G PF+F N + + ++F +V N W E + + +F KLK +K K+ L +++
Sbjct: 662 GNKPFKFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRFTKKLKALKPKLRGLAKEKM 721
Query: 766 SNVSEAVVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQW 945
N+ + EA + AQ++ P +++ +E A + R+A EE +KQ S++ W
Sbjct: 722 GNLVKRTREAYLSLCQAQQSNSQNPSQRAME-IESEAYVRWDRIASIEEKYLKQVSKLHW 780
Query: 946 MDFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPG 1125
+ GD N + FH + R +N+I ++ ++G +I E FF
Sbjct: 781 LKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKNETERFFQEFLQ------ 834
Query: 1126 INNPDAEFIQFSKVVS-------DSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSH 1284
+ D E I K+ S ++ L A ++ EI AL + ++K+PGPDG+TS
Sbjct: 835 LIPNDYEGITVEKLTSLLPYHCSPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSE 894
Query: 1285 FFKVCWSIVEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIY 1464
F+K W I+ A+FV +++FF L VN T L L+PK + D+RPISCCNVIY
Sbjct: 895 FYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIY 954
Query: 1465 KCVTKILAIRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKID 1644
K ++KI+A R+K+VL + ++ NQSAF+ R + +N+LLA E++++YH+D +CA+KID
Sbjct: 955 KVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKID 1014
Query: 1645 IRKAYHTVS*DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
I KA+ +V + L + P FV W+ C++T F+V VN
Sbjct: 1015 ISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTASFSVQVN 1058
Score = 65.5 bits (158), Expect(2) = 6e-73
Identities = 42/117 (35%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Frame = +2
Query: 227 ELLWTDLIAFSGS---NDLPWDVIGDFNEILNFNERIGGNSSSH---FSSMNDFIHCIEE 388
++LW DL S D PW + GDFNEIL+ +E H S M DF +
Sbjct: 532 KILWNDLRDHMDSPIIRDKPWIIFGDFNEILDMDEH--SRMEDHPAVTSGMRDFQSLVNY 589
Query: 389 ALLFDLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDH 559
DL G +TW NK+ I K+DRV+VN W ++ +S F G SDH
Sbjct: 590 CSFSDLASHGPLFTWCNKRDNDP-IWKKLDRVMVNEAWKMVYPQSYNVFEAGGCSDH 645
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 228 bits (580), Expect(2) = 3e-71
Identities = 134/391 (34%), Positives = 207/391 (52%), Gaps = 1/391 (0%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PF+FFN+L + +FL++V +VW S V+G+ MF + KLK +K + R +SN+ +
Sbjct: 240 PFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKR 299
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
EA + +++ Q P + A E A + LA EES +Q+SR+ W GD
Sbjct: 300 TEEAHETLLSFQNLTLDNPSLENA-AHELEAQRKWQILATAEESFFRQRSRVTWFAEGDG 358
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGINNPDA 1143
NT++FH R+ N I +L +D+G D + I+ C +F NL + P D
Sbjct: 359 NTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDNDPYSLEQDD 418
Query: 1144 EFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEADF 1323
+ + S L A + ++I A + SNKA GPDGF
Sbjct: 419 MNLLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGFP--------------V 464
Query: 1324 VKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRMKY 1503
++ FF S LL + N T + L+PK N S +DFRPISC N +YK + ++L R++
Sbjct: 465 TAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQK 524
Query: 1504 VLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTVS*DAI 1683
+L ++S +QSAF+ GR + +N+LLA E++ Y+ + +K+D+RKA+ +V + I
Sbjct: 525 LLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFI 584
Query: 1684 ILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
I L +GVP F+ WI+ CIST F V VN
Sbjct: 585 IAALLALGVPTKFINWIHQCISTPTFTVSVN 615
Score = 70.1 bits (170), Expect(2) = 3e-71
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Frame = +2
Query: 233 LWTDLIAFSGSN---DLPWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFD 403
LW ++ A S + PW ++GDFN++L+ +E S + + DF C+ +A L D
Sbjct: 113 LWREITALVASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLDAELSD 172
Query: 404 LPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSS 565
L + G +TW NK + KIDR+LVN W ++F S F P SDH+S
Sbjct: 173 LVYKGSSFTWWNKS-KTRPVAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHAS 225
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 225 bits (574), Expect(2) = 6e-68
Identities = 130/393 (33%), Positives = 206/393 (52%), Gaps = 2/393 (0%)
Frame = +1
Query: 604 PPFRFFNYLTEEKDFLDIVRNVWSEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEA 783
PPFRF KD+ +V+ W K G+ MF V K K VK + +F N+
Sbjct: 245 PPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLVKINSKEWNKTQFGNIFRQ 304
Query: 784 VVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDS 963
+ + + + Q + N S+ ++ L+ +L + + KQ+ + +M GD+
Sbjct: 305 LRQVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLEYNTTYWKQKCKSDFMVLGDT 364
Query: 964 NTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGIN-NPD 1140
N++F+H+ R+ RN I DN + I E T F F +P N +
Sbjct: 365 NSKFYHTHASIRKYRNQIKEFIPDNAQPITQPDLIEKEITLAFKKRFIS--NPACKFNQN 422
Query: 1141 AEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEAD 1320
+F S +VS++D L + ++ +EI A+ + +K+PGPDGF +FF+ W+++
Sbjct: 423 VDFNLLSPIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWTLIGKS 482
Query: 1321 FVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRMK 1500
+ +Q FF S +L EVN+TFL L+PK+D P FRPIS C+ IYK ++KI+ R+K
Sbjct: 483 VCRAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVISKIITNRLK 542
Query: 1501 YVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTK-CAMKIDIRKAYHTVS*D 1677
L ++ Q AFI R IQDNIL+AHE+ ++ G A+K+D+ KAY +
Sbjct: 543 ITLGKIIHPLQGAFIPERLIQDNILIAHEVFHSFKNKTGRGGWIAIKLDMEKAYDRLEWK 602
Query: 1678 AIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
I + +MG I++ WI +CIS+ F+VLVN
Sbjct: 603 YIYTTMDKMGFSPIWIEWIRSCISSASFSVLVN 635
Score = 61.6 bits (148), Expect(2) = 6e-68
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Frame = +2
Query: 236 WTDLIAFSGSNDLPWDVIGDFNEILNFNERIGG---NSSSHFSSMNDF--IHCIEEALLF 400
W +LIA+ S P+ ++GDFNEI + ++++GG +SS + N F + C E
Sbjct: 123 WDELIAYVSSLSFPFIILGDFNEINSPSDKLGGAPFSSSRAYYMQNLFSQVDCTE----- 177
Query: 401 DLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIF 514
+ F+G +TW K+ GP I ++DR + + W+ +F
Sbjct: 178 -ISFTGQIFTWRKKKDGPNNIHERLDRGVASTSWLMLF 214
>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 208 bits (529), Expect(2) = 9e-68
Identities = 122/393 (31%), Positives = 204/393 (51%)
Frame = +1
Query: 598 GPPPFRFFNYLTEEKDFLDIVRNVWSEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVS 777
GP PFRF N + + IV WS +P +V KLK+ K ++ + F ++
Sbjct: 236 GPKPFRFNNCWLTDPKCMKIVEASWSS----SPKISVVEKLKETKKRLKEWNLNEFGSID 291
Query: 778 EAVVEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFG 957
+ + + + + L+ + A ++ + + +E Q+SRI W+ G
Sbjct: 292 ANIRKLEDCIANFDKEADERELDKEELEKRREAQADLWKWMKRKEIYWAQRSRITWLKAG 351
Query: 958 DSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGINNP 1137
D NT+FFH+ ++ +N + ++ D G ++ +I E +FF +F + P
Sbjct: 352 DKNTKFFHAIASNKKRKNMMACIETD-GQSTNDPSQIKKEARAFFKKIFK---EDHVKRP 407
Query: 1138 DAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEA 1317
E + ++ S + A SL+ P T +EI A+S S+KAPGPDGF F K W I++
Sbjct: 408 TLENLHLKRL-SQNQANSLITPFTTEEIDTAVSSCASDKAPGPDGFNFKFVKSAWDIIKT 466
Query: 1318 DFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRM 1497
D + +F+ + L N ++ L+PKIDNPS++ D+RPIS IYK V K+LA R+
Sbjct: 467 DIYGIVNDFWETGCLPQGCNTAYIALIPKIDNPSSLKDYRPISMVGFIYKIVAKLLAKRL 526
Query: 1498 KYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTKCAMKIDIRKAYHTVS*D 1677
+ V+ L+S QS+++ GR I D L+A EII + + + +K+D KAY +VS +
Sbjct: 527 QSVISSLISPLQSSYVKGRQILDGALVASEIIESC-KKRNIEAILLKLDFHKAYDSVSWN 585
Query: 1678 AIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
+ L +M P + WI TC+++ ++LVN
Sbjct: 586 FLQWTLDQMNFPVKWCEWIKTCVTSASASILVN 618
Score = 78.2 bits (191), Expect(2) = 9e-68
Identities = 46/130 (35%), Positives = 69/130 (53%)
Frame = +2
Query: 188 LLRLFTGITIVLEELLWTDLIAFSGSNDLPWDVIGDFNEILNFNERIGGNSSSHFSSMND 367
L+ ++ I +W +I F SN LP ++GDFNE+L +ER G S SH + +ND
Sbjct: 107 LITVYNPCEIAARSEVWKQIIEFQNSNPLPCLLVGDFNEVLRPSER-GSLSFSH-NGIND 164
Query: 368 FIHCIEEALLFDLPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPG 547
F ++E L ++P S YTW S +DR+LV+ EWVS K L G
Sbjct: 165 FKSFVQELKLLEIPSSSRAYTWYR-----ANSKSLLDRLLVSPEWVSHCPNIKVSILQRG 219
Query: 548 ISDHSSMVIY 577
+SDH ++++
Sbjct: 220 LSDHCPLLVH 229
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 233 bits (593), Expect(2) = 1e-67
Identities = 134/395 (33%), Positives = 229/395 (57%), Gaps = 5/395 (1%)
Frame = +1
Query: 607 PFRFFNYLTEEKDFLDIVRNVWSEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEAV 786
PFRF L E+++ +V+ VW + ++ K+ + + +I +++ SN ++A+
Sbjct: 183 PFRFDRRLREKEEIRALVKEVWELARQDSVLY----KISRCRQSIIKWTKEQNSNSAKAI 238
Query: 787 VEAKKVMITAQEAIQTYPLNASVDAMEKRALSNYARLARHEESIIKQQSRIQWMDFGDSN 966
+A++ + +A A P + + ++ + + Y R EE KQ SR+QW++ GD N
Sbjct: 239 KKAQQALESALSA--DIPDPSLIGSITQELEAAY----RQEELFWKQWSRVQWLNSGDRN 292
Query: 967 TQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPGINNPDAE 1146
+FH++ + RR NN+ +++ +G F E+++I+ +S+F N+FT + NN D +
Sbjct: 293 KGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTS-----NNSDLQ 347
Query: 1147 FIQ--FSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWSIVEAD 1320
+Q S ++S L+ + EI AL I ++KAPGPDGF++ FF W I+EAD
Sbjct: 348 VVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEAD 407
Query: 1321 FVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKILAIRMK 1500
+DI++FF L +N T +TL+PKI P ++D+RPI+ CNV YK V KIL R++
Sbjct: 408 VSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQ 467
Query: 1501 YVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHRDKGPTK---CAMKIDIRKAYHTVS 1671
L +L+S +QSAF+ GR+I DN+L+ HEI+ ++ R G K A+K D+ KAY +
Sbjct: 468 PWLSELISLHQSAFVPGRAIADNVLITHEIL-HFLRVSGAKKYCSMAIKTDMSKAYDRIK 526
Query: 1672 *DAIILYLKRMGVPDIFVTWIYTCISTEKFAVLVN 1776
+ + L R+G D ++ W+ C+ T ++ L+N
Sbjct: 527 WNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLIN 561
Score = 53.1 bits (126), Expect(2) = 1e-67
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +2
Query: 230 LLWTDLIAFSGSNDLPWDVIGDFNEILNFNERIGG--NSSSHFSSMNDFIHCIEEALLFD 403
+ W + + W + GDFN+IL+ +E+ GG F + F+ + L+D
Sbjct: 59 VFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFV---SQNGLWD 115
Query: 404 LPFSGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVIY 577
+ +G+ +W + I S++DR L N W +F SK ++L SDH +V Y
Sbjct: 116 INHTGNSLSWRGTRYSHF-IKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTY 172
>ref|XP_006598323.1| PREDICTED: uncharacterized protein LOC102660513 [Glycine max]
Length = 543
Score = 187 bits (475), Expect(3) = 1e-66
Identities = 107/341 (31%), Positives = 185/341 (54%), Gaps = 8/341 (2%)
Frame = +1
Query: 610 FRFFNYLTEEKDFLDIVRNVW-SEKVIGNPMFILVSKLKKVKHKMISLRRDRFSNVSEAV 786
F++ N ++ +F + V N W S + G PM +L KLKK++ + +N+S+ +
Sbjct: 211 FKYANCVSGMDNFTETVANSWNSARRGGPPMKMLWHKLKKLQPVI--------NNLSKPL 262
Query: 787 VEAKKVMITAQEAIQTYPLNASVDAMEKRALSN-------YARLARHEESIIKQQSRIQW 945
+ K + A+E + + ++D + K + + EE +++Q+++I+W
Sbjct: 263 IGIKVKLQEAREKLTHAQMELTLDRLNKDKIDRTNDCTEAVIKWTEMEEQMLQQRAKIRW 322
Query: 946 MDFGDSNTQFFHSSVKERRCRNNILSLKNDNGVMFDEDKEISLECTSFFSNLFTGAGSPG 1125
+ GD N +FH+S+K + + +I L ++G KEI E F+ +L G P
Sbjct: 323 LRLGDGNNAYFHASLKAKYNQTSIKKLYMNDGNFVTTQKEIEDEIMRFYGDLM-GREEPN 381
Query: 1126 INNPDAEFIQFSKVVSDSDATSLVAPITRDEIIYALSCIGSNKAPGPDGFTSHFFKVCWS 1305
+++ D ++ ++ L+ IT +EI AL IG KAPG DG+ + FFK WS
Sbjct: 382 LDSVDINIMRKGCQLNFDQRKYLIGRITDEEIDKALKSIGDLKAPGIDGYGAKFFKDAWS 441
Query: 1306 IVEADFVKDIQNFFTSFKLLGEVNNTFLTLVPKIDNPSTIADFRPISCCNVIYKCVTKIL 1485
I+++DF I+ FF K+ +N + + L+PK D+RPISCC IYK ++K+L
Sbjct: 442 IIKSDFTDAIREFFEKGKMYEPINTSLVILIPKNQEAKYARDYRPISCCTTIYKVISKVL 501
Query: 1486 AIRMKYVLKDLVSENQSAFISGRSIQDNILLAHEIIRNYHR 1608
R+ V+K +V ++Q+AF+ G+ I D ILLA+E+I+ Y R
Sbjct: 502 TTRLSRVIKSIVHQSQAAFVPGQKIHDQILLAYELIQGYER 542
Score = 84.3 bits (207), Expect(3) = 1e-66
Identities = 45/114 (39%), Positives = 62/114 (54%)
Frame = +2
Query: 233 LWTDLIAFSGSNDLPWDVIGDFNEILNFNERIGGNSSSHFSSMNDFIHCIEEALLFDLPF 412
LW DL A + + PW +IGDFN +L N+R+GG D ++ L ++
Sbjct: 87 LWHDLEAINKTQQGPWCLIGDFNNVLKTNDRVGGKMVCE-KEYKDLRTMMDNTGLAEMDS 145
Query: 413 SGDFYTWSNKQIGPGRIISKIDRVLVNIEWVSIFTKSKTDFLTPGISDHSSMVI 574
GD+YTWSNKQ I S+IDR+L N EW S +TPGISDH+ + +
Sbjct: 146 KGDYYTWSNKQ-SENIIYSRIDRILGNTEWFSKNLNLSLTNMTPGISDHAMLCL 198
Score = 32.3 bits (72), Expect(3) = 1e-66
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Frame = +3
Query: 48 FLDNYVNDPSGRIWVGWNPS*NV-------CEVTAFCCSRYIFRSYYLQEFEVSY 191
+LDNYV +GRIWV W+ N+ C C Y Y++Q Y
Sbjct: 24 YLDNYVKHNNGRIWVYWDD--NIVDIQEVNCTAQLIHCKVYDATGYFMQWLTAIY 76