BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00031510
         (2057 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82754.1| retrofit [Oryza longistaminata]                        174   e-124
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  176   e-123
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   168   e-123
emb|CCH50966.1| T4.5 [Malus x robusta]                                169   e-121
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   168   e-120
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   174   e-120
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   175   e-120
emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera]   179   e-120
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   171   e-120
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   163   e-119
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]   176   e-118
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  167   e-117
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   167   e-117
emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]   187   e-117
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   164   e-117
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   174   e-117
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   162   e-116
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   163   e-115
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   159   e-115
ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846...   161   e-115

>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  174 bits (442), Expect(3) = e-124
 Identities = 87/175 (49%), Positives = 117/175 (66%)
 Frame = +1

Query: 112  HTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRS 291
            HT+ +SGI K K   D  + +                   S  EP+N ++A+ D  W  +
Sbjct: 908  HTRLRSGIRKEKVYTDGTVKY---------------GCFSSTGEPQNDKEALGDKNWRDA 952

Query: 292  MTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGV 471
            M  E++AL+ NDT+  VP+  G NI+GC+WVYK K K+DGTLD++K+RLVA+G+ Q  G+
Sbjct: 953  METEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGI 1012

Query: 472  DCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
            D  +TFS VVK AT RIILS+A+S GW +RQLDV NAFLHG+L E+VYM+QPPGF
Sbjct: 1013 DYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGF 1067



 Score =  174 bits (440), Expect(3) = e-124
 Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
 Frame = +3

Query: 642  SDHPDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXX 821
            S  PDYVCKL K+LY LKQA R W+ R SK +++ GF  S+ D S+F+  + G+ M    
Sbjct: 1070 SSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLV 1129

Query: 822  XXXXXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSL 1001
                      +       +  L  EFA+KDLG L YFLGI+ T  S+   + LTQ KY+ 
Sbjct: 1130 YVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNG--VILTQEKYAN 1187

Query: 1002 ELLKKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFA 1175
            +LLK+ +M  CKP  TP++  ++ +LY+G+ L   DA  YRS+VG LQYLT++RPD++++
Sbjct: 1188 DLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYS 1247

Query: 1176 VNYISQFMHQPTDVHLQLAKRILRY 1250
            VN + QF+H PT  H    KRILRY
Sbjct: 1248 VNKVCQFLHAPTTSHWIAVKRILRY 1272



 Score =  147 bits (370), Expect(3) = e-124
 Identities = 73/149 (48%), Positives = 104/149 (69%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G+       +++  YSD+DWAG  D RKST G+ VF+G NLV  S++KQPT+SRSSTEAE
Sbjct: 1280 GLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAE 1339

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKA+A T  E+  V  +L+ELG      + ++C+NLGA  L+AN VFHARTKHIE+D+H 
Sbjct: 1340 YKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHF 1399

Query: 1631 IRDLMAIGFVQTPYVPTLHKIADPFTKGL 1717
            +R+ ++   ++  +VP+  ++AD FTK L
Sbjct: 1400 VRERVSQKLLEIDFVPSGDQVADGFTKAL 1428


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  176 bits (445), Expect(3) = e-123
 Identities = 87/175 (49%), Positives = 117/175 (66%)
 Frame = +1

Query: 112  HTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRS 291
            HT+ +SGI K K   D  + +                   S  EP+N ++A+ D  W  +
Sbjct: 899  HTRLRSGIRKEKVYTDGTVKY---------------GCFTSTGEPQNDKEALGDKNWKAA 943

Query: 292  MTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGV 471
            M  E+DAL+ NDT+  VP+  G N++GC+WVYK K K+DGTLD++K+RLVA+G+ Q  G+
Sbjct: 944  MEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGI 1003

Query: 472  DCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
            D  +TFS VVK AT RIILS+A+S GW +RQLDV NAFLHG+L E+VYM+QPPGF
Sbjct: 1004 DYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGF 1058



 Score =  169 bits (428), Expect(3) = e-123
 Identities = 88/202 (43%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P+YVCKL K+LY LKQA R W+ R SK +++ GF  S+ D S+F+  + G+ M       
Sbjct: 1064 PNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVD 1123

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                   +       +  L  EFA+KDLG L YFLGI+ T   +   + LTQ KY+ +LL
Sbjct: 1124 DIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNG--IVLTQEKYANDLL 1181

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            K+ +M  CKP  TP++  ++ +LY+G+ L   DA  YRS+VG LQYLT++RPD++++VN 
Sbjct: 1182 KRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNK 1241

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT  H    KRILRY
Sbjct: 1242 VCQFLHAPTTDHWTAVKRILRY 1263



 Score =  147 bits (372), Expect(3) = e-123
 Identities = 74/153 (48%), Positives = 105/153 (68%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G+       +++  YSD+DWAG  D RKST G+ VF+G NLV  S++KQPT+SRSSTEAE
Sbjct: 1271 GLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAE 1330

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKA+A T  E+  V  +L+ELG      + ++C+NLGA  L+AN VFHARTKHIE+D+H 
Sbjct: 1331 YKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHF 1390

Query: 1631 IRDLMAIGFVQTPYVPTLHKIADPFTKGLPKEL 1729
            +R+ ++   ++  +VP+  ++AD FTK L   L
Sbjct: 1391 VRERVSQKLLEIDFVPSGDQVADGFTKALSVRL 1423


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  168 bits (425), Expect(3) = e-123
 Identities = 86/202 (42%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P+YVCKL K+LY LKQA R W+ R S  + + GF+ S+ D S+F++ +  + +       
Sbjct: 443  PNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVD 502

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                     +  +  +  L  +FA+KDLG L YFLGI+     D   L L+Q KY+ +LL
Sbjct: 503  DIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDG--LMLSQEKYASDLL 560

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            ++  M ECKP  TP++  ++ S+ +GTLL  QD+  YRS+VG LQYLT++RPD+SF++N 
Sbjct: 561  RRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINK 620

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT  H    KRILRY
Sbjct: 621  VCQFLHAPTTTHWAAVKRILRY 642



 Score =  162 bits (411), Expect(3) = e-123
 Identities = 78/154 (50%), Positives = 109/154 (70%)
 Frame = +2

Query: 1259 SLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSS 1438
            ++ +G+KF      ++S +SD+DWAG PD R+ST G+ VF+GPNLV  S++KQ T+SRSS
Sbjct: 646  TVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSS 705

Query: 1439 TEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEI 1618
            TEAEYKALA    E+  V  +LQELG      + L+C+NLGA  L+AN +FHARTKHIE+
Sbjct: 706  TEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEV 765

Query: 1619 DFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLP 1720
            DFH +R+ +A   ++  Y+ T  ++AD FTK +P
Sbjct: 766  DFHFVRERVARKLLEIAYISTKDQVADGFTKAIP 799



 Score =  161 bits (408), Expect(3) = e-123
 Identities = 82/174 (47%), Positives = 113/174 (64%)
 Frame = +1

Query: 115 TKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRSM 294
           T+ +SGI K K   D  + WL+ T               S  EP++  +A+ +  W  +M
Sbjct: 279 TRLQSGIRKEKVYTDGTVKWLNFT---------------SSGEPQSLEEAVNNKHWKEAM 323

Query: 295 TNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGVD 474
             E+ AL+ N T+  VP   G N++ C+WVYK K K+DG+LD++K+RLVA+G+ Q  G+D
Sbjct: 324 DAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGID 383

Query: 475 CAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
             +TFS VVK AT RI+LSLA+S GW +RQLDV NAFLHG L E+VYM+QPPG+
Sbjct: 384 YEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGY 437


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  169 bits (428), Expect(3) = e-121
 Identities = 96/200 (48%), Positives = 119/200 (59%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P +VCKLRKSLY LKQA R W+E F   +L  GF  S +D S+F   +  +         
Sbjct: 1285 PHHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLFIKRDTSITFILVYVDD 1344

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                 G S  +    I  L+  F +KDLG ++YFLGI+   +     L L Q KY+L+LL
Sbjct: 1345 IIIT-GSSVTECQSIISQLQTMFPVKDLGDINYFLGIEVHKSDQG--LLLHQAKYALDLL 1401

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLLQDAASYRSLVGDLQYLTMSRPDLSFAVNYIS 1190
            KK DML  KPC TPV+  K    + GTLL D  SYRS VG LQYLT +RPDL+FAVN + 
Sbjct: 1402 KKTDMLGAKPCATPVSTSKLD--HSGTLLSDPTSYRSTVGALQYLTWTRPDLAFAVNQVC 1459

Query: 1191 QFMHQPTDVHLQLAKRILRY 1250
            Q+MH P  +HLQ  KRILRY
Sbjct: 1460 QYMHSPQTIHLQAVKRILRY 1479



 Score =  162 bits (410), Expect(3) = e-121
 Identities = 86/178 (48%), Positives = 114/178 (64%)
 Frame = +1

Query: 109  MHTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVR 288
            M T++K+GI K K            TA +H +P    +L      P  F QA K   W+ 
Sbjct: 1114 MITRAKAGIHKPKVF----------TATKHQLPSTVDSLTALPPTPSTFLQASKSSHWME 1163

Query: 289  SMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDG 468
            +M  E  AL S  T+E VP     NI+GC+WV+K K K DGT++++K+RLVA+G+ Q +G
Sbjct: 1164 AMQFEFQALQSTGTWELVPNHSTYNIVGCKWVFKVKHKPDGTIERYKARLVAKGFHQQEG 1223

Query: 469  VDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGFVN 642
            +D +ETFS V K  T RI+LS+A+S  WF+ QLDVSNAFLHG+L EDVYM QPPGFV+
Sbjct: 1224 LDFSETFSPVAKPTTIRILLSIAVSYYWFIHQLDVSNAFLHGHLKEDVYMVQPPGFVD 1281



 Score =  154 bits (390), Expect(3) = e-121
 Identities = 78/162 (48%), Positives = 112/162 (69%)
 Frame = +2

Query: 1256 GSLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRS 1435
            G++  G+ FT G    L+A+SD+DWAG P  R+ST+GYCVF+G NL+  S+KKQ T++RS
Sbjct: 1482 GTVDLGLWFTKGS-QCLTAWSDADWAGCPVDRRSTSGYCVFLGSNLISWSAKKQATVARS 1540

Query: 1436 STEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIE 1615
            STEAEY++LA TA E+  V  +L ++ F +    ++YC+N    +LA N VFHARTKH+E
Sbjct: 1541 STEAEYRSLANTAAEITWVCKILHDISFPLLKTPVIYCDNKSVIALAFNPVFHARTKHVE 1600

Query: 1616 IDFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLPKELFFRL 1741
            ID+H IR+ + +G +   +V +L +IAD FTK L  + F  L
Sbjct: 1601 IDYHYIREKVLLGHIGVQHVASLLQIADIFTKPLAADRFAAL 1642


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  168 bits (425), Expect(3) = e-120
 Identities = 86/202 (42%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P+YVCKL K+LY LKQA R W+ R S  + + GF+ S+ D S+F++ +  + +       
Sbjct: 1021 PNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVD 1080

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                     +  +  +  L  +FA+KDLG L YFLGI+     D   L L+Q KY+ +LL
Sbjct: 1081 DIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDG--LMLSQEKYASDLL 1138

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            ++  M ECKP  TP++  ++ S+ +GTLL  QD+  YRS+VG LQYLT++RPD+SF++N 
Sbjct: 1139 RRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINK 1198

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT  H    KRILRY
Sbjct: 1199 VCQFLHAPTTTHWAAVKRILRY 1220



 Score =  160 bits (405), Expect(3) = e-120
 Identities = 77/154 (50%), Positives = 108/154 (70%)
 Frame = +2

Query: 1259 SLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSS 1438
            ++ +G+KF      ++S +SD+DWAG PD R+ST G+ VF+GPNLV  S++KQ T+SRSS
Sbjct: 1224 TVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSS 1283

Query: 1439 TEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEI 1618
             EAEYKALA    E+  V  +LQELG      + L+C+NLGA  L+AN +FHARTKHIE+
Sbjct: 1284 IEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEV 1343

Query: 1619 DFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLP 1720
            DFH +R+ +A   ++  Y+ T  ++AD FTK +P
Sbjct: 1344 DFHFVRERVARKLLEIAYISTKDQVADGFTKAIP 1377



 Score =  155 bits (391), Expect(3) = e-120
 Identities = 73/140 (52%), Positives = 100/140 (71%)
 Frame = +1

Query: 217  TALVDSLIEPKNFRQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTK 396
            T L   + + K+  +A+ +  W  +M  E+ AL+ N T+  VP   G N++ C+WVYK K
Sbjct: 876  TRLQSGIRKEKSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVK 935

Query: 397  LKSDGTLDKFKSRLVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVS 576
             K+DG+LD++K+RLVA+G+ Q  G+D  +TFS VVK AT RI+LSLA+S GW +RQLDV 
Sbjct: 936  RKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVK 995

Query: 577  NAFLHGYLNEDVYMKQPPGF 636
            NAFLHG L E+VYMKQPPG+
Sbjct: 996  NAFLHGVLEEEVYMKQPPGY 1015


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  174 bits (441), Expect(3) = e-120
 Identities = 91/202 (45%), Positives = 128/202 (63%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P +VCKL K+LY LKQA R WF R SK ++  GF  S+ D S+F+  +  + M       
Sbjct: 1081 PHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVD 1140

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                   S       +  LK EFA+KDLG L YFLGI+ +   +   + L Q+KY+ +LL
Sbjct: 1141 DIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNG--IVLNQDKYANDLL 1198

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            KK  M++CKP  TP++  ++ SL++G+LL  +DA+ YRS+VG LQYLT++RPD++F+VN 
Sbjct: 1199 KKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNK 1258

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT VH    KRILRY
Sbjct: 1259 VCQFLHAPTTVHWIAVKRILRY 1280



 Score =  172 bits (437), Expect(3) = e-120
 Identities = 93/174 (53%), Positives = 116/174 (66%)
 Frame = +1

Query: 115  TKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRSM 294
            T+ +SG+ K K   D  I + H           FTA      EP N  +A+KD  W  +M
Sbjct: 915  TRLQSGVRKEKVYTDGTIKYKHSW---------FTASG----EPTNDLEALKDKNWKLAM 961

Query: 295  TNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGVD 474
             +E+DALV N T+  VP   G NI+GC+WVYK K K+DGTLD++K+RLVA+G+ Q  G+D
Sbjct: 962  DSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGID 1021

Query: 475  CAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
              +TFS VVK AT RIILSLA+S GW +RQLDV NAFLHGYL E+VYM QPPGF
Sbjct: 1022 YEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGF 1075



 Score =  136 bits (342), Expect(3) = e-120
 Identities = 67/153 (43%), Positives = 102/153 (66%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G++      +++S +SD+DWAG  D R+ST G+ +F+G NLV  +++KQ T+SRSSTE+E
Sbjct: 1288 GLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESE 1347

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKA+A    E+  V  +L EL       + ++C+NLGA  L+AN VFHARTKHIE+D+H 
Sbjct: 1348 YKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHF 1407

Query: 1631 IRDLMAIGFVQTPYVPTLHKIADPFTKGLPKEL 1729
            +R+ ++   ++  +V T  ++AD FTK L   L
Sbjct: 1408 VRERVSQKLLEIDFVSTNDQVADGFTKPLSVRL 1440


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  175 bits (444), Expect(3) = e-120
 Identities = 90/202 (44%), Positives = 127/202 (62%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P YVCKL K+LY LKQA R W+ R SK +   GF  S+ D S+F++ + GL +       
Sbjct: 1075 PGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVD 1134

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                       ++  +  LK EFA+KDLG L YFLGI+    +D   + LTQ+KY+ +LL
Sbjct: 1135 DIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDE--IILTQDKYACDLL 1192

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLLQ--DAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            ++ +M +CKP  TP++  ++ S ++G LL   DA +YRS+VG LQYLT++RPD++F VN 
Sbjct: 1193 RRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNK 1252

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT VH    KRILRY
Sbjct: 1253 VCQFLHAPTTVHWAAVKRILRY 1274



 Score =  161 bits (408), Expect(3) = e-120
 Identities = 73/135 (54%), Positives = 103/135 (76%)
 Frame = +1

Query: 241  EPKNFRQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLD 420
            EPKN   A+++  W ++M  E++AL++N T+  VP   G N++ C+WVYK K K DG+LD
Sbjct: 938  EPKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDGSLD 997

Query: 421  KFKSRLVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYL 600
            ++K+RLVA+G+ Q  G+D  +TFS VVK AT RI+LS+A+S GW +RQLDV NAFLHG+L
Sbjct: 998  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFL 1057

Query: 601  NEDVYMKQPPGFVNQ 645
             E+VYMKQPPG+ ++
Sbjct: 1058 EEEVYMKQPPGYEDE 1072



 Score =  145 bits (367), Expect(3) = e-120
 Identities = 73/150 (48%), Positives = 102/150 (68%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G+K       ++SAYSD+DWAG  D R+ST G+ VF+G NLV   ++KQ T+SRSSTE+E
Sbjct: 1282 GLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRSSTESE 1341

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKALA    E+  V  +L EL       + L+C+NLGA  L++N VFHARTKHIE+D+H 
Sbjct: 1342 YKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHF 1401

Query: 1631 IRDLMAIGFVQTPYVPTLHKIADPFTKGLP 1720
            +R+ ++   ++  +VPT  ++AD FTK LP
Sbjct: 1402 VRERVSQKLLEIDFVPTGDQVADGFTKALP 1431


>emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera]
          Length = 1379

 Score =  179 bits (454), Expect(3) = e-120
 Identities = 95/201 (47%), Positives = 130/201 (64%)
 Frame = +3

Query: 648  HPDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXX 827
            HP +VCKL+K+LY LKQA R WF+RFS F+LK GF  SR D S+F F +    +      
Sbjct: 413  HPLHVCKLKKALYGLKQAPRAWFQRFSSFLLKLGFFCSRADTSLFVFTKKDDLIYLLLYV 472

Query: 828  XXXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLEL 1007
                  G +   +N FI  L +EFA+KDLG LSYFLG++ ++  D    FL+Q KY+ ++
Sbjct: 473  DDIILTGNNPALINRFISQLHSEFAVKDLGPLSYFLGLEVSYIPDG--FFLSQVKYATDI 530

Query: 1008 LKKYDMLECKPCKTPVAPGKRASLYDGTLLQDAASYRSLVGDLQYLTMSRPDLSFAVNYI 1187
            L +  +L+ KP  TP+   +R S  +GT   D   YRSLVG LQYLT++RP+L+ ++N +
Sbjct: 531  LARAQLLDSKPVPTPMIVSQRLSS-EGTPFADPTLYRSLVGALQYLTITRPNLAHSINSV 589

Query: 1188 SQFMHQPTDVHLQLAKRILRY 1250
            SQF+H PT+VH Q  KRILRY
Sbjct: 590  SQFLHAPTEVHFQAVKRILRY 610



 Score =  152 bits (384), Expect(3) = e-120
 Identities = 82/182 (45%), Positives = 123/182 (67%), Gaps = 3/182 (1%)
 Frame = +1

Query: 106 PMHTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLI---EPKNFRQAMKDP 276
           PM T++KSGI K +          H     HL  +  + L+ +L+   EPK F+ A K+P
Sbjct: 242 PMITRAKSGIFKPR----------HPA---HLSFVQSSPLIHALLATSEPKGFKSAAKNP 288

Query: 277 RWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYT 456
            W+ +M ++  AL +N T++ VP     NI+G +WV++TK  S G++++FK+RLVA+GYT
Sbjct: 289 AWLAAMDDKIKALQTNHTWDLVPRPSNTNIVGSKWVFRTKFLSYGSIERFKARLVAKGYT 348

Query: 457 QIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
           Q+ G+D  +TFS VVK +T R++LSLA+S+ W +RQLDV NAFL+G L+E VYM+QP G+
Sbjct: 349 QLPGLDYKDTFSPVVKASTVRVVLSLAVSHKWPLRQLDVKNAFLNGILHETVYMEQPLGY 408

Query: 637 VN 642
           V+
Sbjct: 409 VD 410



 Score =  151 bits (381), Expect(3) = e-120
 Identities = 75/163 (46%), Positives = 116/163 (71%), Gaps = 2/163 (1%)
 Frame = +2

Query: 1256 GSLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRS 1435
            G+L  G+KFT      L AYSD+DWAG PD R+ST+GY +F+G NLV  S+KKQPT+SRS
Sbjct: 613  GTLHFGLKFTSCSSMGLVAYSDADWAGCPDTRRSTSGYSIFLGNNLVSWSAKKQPTVSRS 672

Query: 1436 STEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIE 1615
            S E+EY+ALALTA +V  ++++L++L   ++   +L C+N  A  L++N V H R KH++
Sbjct: 673  SCESEYRALALTAAKVLWLTHLLRDLRVTLTHRPLLLCDNKSAIFLSSNPVSHKRAKHVD 732

Query: 1616 IDFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLPKEL--FFR 1738
            +D+H +R+L+  G ++  ++P+  ++AD FTK + ++L  FFR
Sbjct: 733  LDYHFLRELIVAGTLRIQHIPSHLQLADVFTKSVSRDLYVFFR 775


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  171 bits (434), Expect(3) = e-120
 Identities = 89/205 (43%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
 Frame = +3

Query: 642  SDHPDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXX 821
            S  PDYVCKL K+LY LKQA R W+ R SK + + GF  S+ D S+F+  + G+ M    
Sbjct: 1073 SSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLV 1132

Query: 822  XXXXXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSL 1001
                      +       +  L  EF +KDLG L YFLGI+ T  S+   + LTQ KY+ 
Sbjct: 1133 YVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNG--VILTQEKYAN 1190

Query: 1002 ELLKKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFA 1175
            ++LK+ +M  CKP  TP++  ++ +LY+G+ L   DA  YRS+VG LQYLT++RPD++++
Sbjct: 1191 DMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYS 1250

Query: 1176 VNYISQFMHQPTDVHLQLAKRILRY 1250
            VN + QF+H PT  H    KRILRY
Sbjct: 1251 VNKVCQFLHAPTTSHWIAVKRILRY 1275



 Score =  170 bits (431), Expect(3) = e-120
 Identities = 84/175 (48%), Positives = 116/175 (66%)
 Frame = +1

Query: 112  HTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRS 291
            HT+ +SGI K K   +  + +                   S  EP+N ++A+ D  W  +
Sbjct: 911  HTRLRSGIRKEKVYTNGTVKY---------------GCFSSTGEPQNDKEALGDKNWRDA 955

Query: 292  MTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGV 471
            M  E++AL+ NDT+  VP+  G NI+GC+WVYK K K+DGTLD++K+RL+A+G+ Q  G+
Sbjct: 956  METEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGI 1015

Query: 472  DCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
            D  +TFS VVK AT RIILS+A+S GW +RQLDV N FLHG+L E+VYM+QPPGF
Sbjct: 1016 DYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGF 1070



 Score =  140 bits (353), Expect(3) = e-120
 Identities = 71/144 (49%), Positives = 101/144 (70%)
 Frame = +2

Query: 1298 SVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAEYKALALTAT 1477
            +++  YSD+D AG  D RKST G+ VF+G NLV  S++KQPT+SRSSTEAEYKA+A T  
Sbjct: 1292 TLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTA 1351

Query: 1478 EVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHTIRDLMAIGF 1657
            E+  V  VL+ELG      + ++C+NLGA  L+AN VFHA+TKHI +D+H +R+ ++   
Sbjct: 1352 ELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKL 1411

Query: 1658 VQTPYVPTLHKIADPFTKGLPKEL 1729
            ++  +VP+  ++AD FTK L   L
Sbjct: 1412 LEIDFVPSGDQVADGFTKALSARL 1435


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 932

 Score =  163 bits (412), Expect(3) = e-119
 Identities = 75/135 (55%), Positives = 102/135 (75%)
 Frame = +1

Query: 241 EPKNFRQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLD 420
           EP+N R+AM +  W  +M  E+ A +SN T+  VP   G NI+ C+W+YK K K+DG++D
Sbjct: 425 EPENLREAMANSNWRLAMEQEYSAFMSNKTWHLVPPTQGKNIIDCKWMYKIKRKADGSID 484

Query: 421 KFKSRLVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYL 600
           ++K+RLVA+G+ Q  G+D  +TFS VVK AT R+ILS+A+S GW +RQLDV NAFLHGYL
Sbjct: 485 RYKARLVAKGFKQRYGIDYEDTFSLVVKAATIRLILSIAVSKGWSLRQLDVQNAFLHGYL 544

Query: 601 NEDVYMKQPPGFVNQ 645
            E+VYM+QPPGF N+
Sbjct: 545 EEEVYMRQPPGFENK 559



 Score =  159 bits (402), Expect(3) = e-119
 Identities = 81/157 (51%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
 Frame = +2

Query: 1256 GSLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRS 1435
            G++  G++F   D  ++SA+SD+DWAG  D R+ST G+ VF+GPNL+  S++KQ T+SRS
Sbjct: 764  GTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRS 823

Query: 1436 STEAEYKALALTATEVQRVSYVLQELGFHVSTPSI--LYCENLGAASLAANLVFHARTKH 1609
            STEAEYKALA   TEV  V  +L EL   ++ PS+  L+C+NLGA  L+AN VFHARTKH
Sbjct: 824  STEAEYKALANATTEVTWVRKILDEL--RIARPSVAQLWCDNLGATYLSANPVFHARTKH 881

Query: 1610 IEIDFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLP 1720
            IEID+H +R+ +A   +   ++ T  ++AD FTK LP
Sbjct: 882  IEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLP 918



 Score =  159 bits (401), Expect(3) = e-119
 Identities = 86/202 (42%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P+Y+CKL K+LY LKQA R W+ R S  + + GF+ S+ D S+F++ + G  +       
Sbjct: 562  PNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFILVYVD 621

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                   S   +   +  L+ +FA+KDLG L YFLGI+    S    L L+Q  Y+ ++L
Sbjct: 622  DIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQG--LVLSQAWYASDIL 679

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            K+  M  CKP  TP++  ++ S+ DG  L   DA+ YRS+VG LQYLT++R DLSF VN 
Sbjct: 680  KRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNK 739

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT VH    KRILRY
Sbjct: 740  VCQFLHSPTTVHWSAVKRILRY 761


>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
          Length = 1361

 Score =  176 bits (445), Expect(3) = e-118
 Identities = 92/200 (46%), Positives = 129/200 (64%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P +VC+L+++LY LKQA R WF RFS F+LK+GF  S+ D+S+F++      +       
Sbjct: 976  PQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSSQADSSLFFYHSSLGTVYLLLYVD 1035

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                 G + + ++ FI  L  EF+MKDLG L YFLG++    ++   LFL+Q KY+L+LL
Sbjct: 1036 DMIITGSTPSLVHTFITRLSNEFSMKDLGDLHYFLGVEVQ--ANEKGLFLSQTKYALDLL 1093

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLLQDAASYRSLVGDLQYLTMSRPDLSFAVNYIS 1190
            ++  M++ KP  TP   G+  S  +GTL  D   +RSL G LQYLT++RPDLSF+VN I 
Sbjct: 1094 QRASMIDAKPISTPFVVGQHLSA-EGTLFSDPTLFRSLAGALQYLTITRPDLSFSVNSIF 1152

Query: 1191 QFMHQPTDVHLQLAKRILRY 1250
            QFMH PT+ H +  KRILRY
Sbjct: 1153 QFMHAPTEDHFRALKRILRY 1172



 Score =  167 bits (424), Expect(3) = e-118
 Identities = 90/187 (48%), Positives = 127/187 (67%), Gaps = 1/187 (0%)
 Frame = +1

Query: 106  PMHTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWV 285
            PM T+ K+GI K      +    +H ++   L   AF AL     EP+ F+ A K P W+
Sbjct: 804  PMITRGKAGIFK-----PRLYHAMHISSSSQLFQ-AFLALK----EPRGFKSAAKHPEWL 853

Query: 286  RSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQID 465
             +M +E  AL  NDT+  VP     N++GCRW++KTKL SDG++++ K+RLVAQG++Q+ 
Sbjct: 854  SAMDDEIHALKKNDTWVLVPRPQHHNVVGCRWIFKTKLHSDGSIERHKARLVAQGFSQVH 913

Query: 466  GVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGFVN- 642
            G+D  +TFS VV+ AT RIILSLA+++GW + QLDV NAFLHG+LNE+VYM+QPPG+ + 
Sbjct: 914  GLDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNAFLHGFLNEEVYMEQPPGYTDP 973

Query: 643  QIIQIMC 663
            Q  Q +C
Sbjct: 974  QFPQHVC 980



 Score =  133 bits (335), Expect(3) = e-118
 Identities = 66/160 (41%), Positives = 100/160 (62%)
 Frame = +2

Query: 1256 GSLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRS 1435
            G+   G++        L  YSD+DWAG PD R+ST GY +F G NL+  SSKKQ T+SRS
Sbjct: 1175 GTAHHGLQLHKQSTRDLLGYSDADWAGCPDTRRSTTGYAIFFGANLISWSSKKQSTVSRS 1234

Query: 1436 STEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIE 1615
            S EAEY++LA+   ++  +  +L++L   +S P  + C+N  A  +A N V   R+KHI 
Sbjct: 1235 SAEAEYRSLAVATADIAWIIQLLRDLHVTLSVPPKILCDNQSAIFMAVNPVTRPRSKHIA 1294

Query: 1616 IDFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLPKELFF 1735
            ID+H +R+L+  G ++  +VP+  ++AD  TKG+ K  F+
Sbjct: 1295 IDYHFVRELVDKGTLKIDFVPSHLQLADSLTKGVTKPQFY 1334


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  167 bits (422), Expect(3) = e-117
 Identities = 83/175 (47%), Positives = 115/175 (65%)
 Frame = +1

Query: 112  HTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRS 291
            HT+ +SGI K K   +  + +                   S  EP+N ++A+ D  W  +
Sbjct: 911  HTRLRSGIRKEKVYTNGTVKY---------------GCFSSTGEPQNDKEALGDKNWRDA 955

Query: 292  MTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGV 471
            M  E++AL+ NDT+  VP+  G NI+GC+WVYK K K+DGTLD++K+RL+A+G+ Q  G+
Sbjct: 956  METEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGI 1015

Query: 472  DCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
            D  +TFS VVK AT RIILS+A+S GW +RQLDV N FL G+L E+VYM+QPPGF
Sbjct: 1016 DYEDTFSPVVKAATIRIILSIAVSRGWNLRQLDVQNDFLRGFLEEEVYMQQPPGF 1070



 Score =  166 bits (419), Expect(3) = e-117
 Identities = 87/205 (42%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
 Frame = +3

Query: 642  SDHPDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXX 821
            S   DYVCKL K+LY LKQA R W+ R SK + + GF  S+ D S+F+  + G+ M    
Sbjct: 1073 SSKRDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLV 1132

Query: 822  XXXXXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSL 1001
                      +       +  L  EF +KDLG L YFLGI+ T  S+   + LTQ KY+ 
Sbjct: 1133 YVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNG--VILTQEKYAN 1190

Query: 1002 ELLKKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFA 1175
            ++LK+ +M  C P  TP++  ++ +LY+G+ L   DA  YRS+VG LQYLT++RPD++++
Sbjct: 1191 DMLKRVNMSNCTPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYS 1250

Query: 1176 VNYISQFMHQPTDVHLQLAKRILRY 1250
            VN + QF+H PT  H    KRILRY
Sbjct: 1251 VNKVCQFLHAPTTSHWIAVKRILRY 1275



 Score =  140 bits (353), Expect(3) = e-117
 Identities = 71/144 (49%), Positives = 101/144 (70%)
 Frame = +2

Query: 1298 SVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAEYKALALTAT 1477
            +++  YSD+D AG  D RKST G+ VF+G NLV  S++KQPT+SRSSTEAEYKA+A T  
Sbjct: 1292 TLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTA 1351

Query: 1478 EVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHTIRDLMAIGF 1657
            E+  V  VL+ELG      + ++C+NLGA  L+AN VFHA+TKHI +D+H +R+ ++   
Sbjct: 1352 ELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKL 1411

Query: 1658 VQTPYVPTLHKIADPFTKGLPKEL 1729
            ++  +VP+  ++AD FTK L   L
Sbjct: 1412 LEIDFVPSGDQVADGFTKALSARL 1435


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  167 bits (422), Expect(3) = e-117
 Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 2/201 (0%)
 Frame = +3

Query: 654  DYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXXX 833
            +YVCKL K+LY LKQA R W+ R S  +L  GF  S+ D S+F++ +  + +        
Sbjct: 942  NYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVDD 1001

Query: 834  XXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELLK 1013
                  ++      +  L  EFA+KDLG L+YFLGI+     D   + LTQ+KY+ +LLK
Sbjct: 1002 IIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDG--IILTQDKYASDLLK 1059

Query: 1014 KYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNYI 1187
            K  M +CKP  TP++  ++ S+++G+ L  +D   YRS+VG LQYLT++RPD++F+VN +
Sbjct: 1060 KVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKV 1119

Query: 1188 SQFMHQPTDVHLQLAKRILRY 1250
             QF+H PT +H    KRILRY
Sbjct: 1120 CQFLHAPTTLHWAAVKRILRY 1140



 Score =  154 bits (389), Expect(3) = e-117
 Identities = 73/132 (55%), Positives = 97/132 (73%)
 Frame = +1

Query: 241  EPKNFRQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLD 420
            EP +  +A+ D  W  +M  E+ AL+ N T+  VP   G N++GC+WVYK K K+DG+LD
Sbjct: 804  EPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLD 863

Query: 421  KFKSRLVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYL 600
            ++K+RLVA+GY Q  G+D  +TFS VVK AT RIILS+A+S GW + QLDV NAFLHG L
Sbjct: 864  RYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVL 923

Query: 601  NEDVYMKQPPGF 636
             E+VYM+QPPG+
Sbjct: 924  EEEVYMQQPPGY 935



 Score =  152 bits (383), Expect(3) = e-117
 Identities = 77/153 (50%), Positives = 104/153 (67%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G+     D +++SA+SD+DWAG  D RKST G+ VF+G NLV  S++KQPT+SRSSTE+E
Sbjct: 1148 GLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESE 1207

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKALA    E+  V  +L E+       + L+C+NLGA  L+AN +FHARTKHIE+D+H 
Sbjct: 1208 YKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHF 1267

Query: 1631 IRDLMAIGFVQTPYVPTLHKIADPFTKGLPKEL 1729
            +RD +A   +   YVPT  ++AD FTK L   L
Sbjct: 1268 VRDRVAKKLLDIEYVPTGDQVADGFTKPLSVRL 1300


>emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]
          Length = 1556

 Score =  187 bits (474), Expect(3) = e-117
 Identities = 97/202 (48%), Positives = 136/202 (67%)
 Frame = +3

Query: 645  DHPDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXX 824
            +HP +VCKL+K+LY LKQA R WF+RFS F+LK GF  S  D S+F F  +   +     
Sbjct: 1139 EHPTHVCKLQKALYGLKQAPRAWFDRFSAFLLKYGFFCSLADPSLFIFHSNLGSLILLLY 1198

Query: 825  XXXXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLE 1004
                   G S   ++ FI +L +EFAMKDLG + YFLGI+ + T+D   L L+Q+ Y+  
Sbjct: 1199 VDDILLTGSSTALVSTFIQLLSSEFAMKDLGQIHYFLGIEISQTADG--LHLSQSHYAFT 1256

Query: 1005 LLKKYDMLECKPCKTPVAPGKRASLYDGTLLQDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            +L++ +M++CKP  TP+   K  +L +  LL+D + +R LVG LQYLT++RPDLS++VNY
Sbjct: 1257 ILERANMVDCKPMSTPLE-AKTKTLPNSVLLEDPSYFRGLVGALQYLTLTRPDLSYSVNY 1315

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
             SQFMH PT VHL++ +RILRY
Sbjct: 1316 ASQFMHAPTLVHLKMVRRILRY 1337



 Score =  146 bits (368), Expect(3) = e-117
 Identities = 67/134 (50%), Positives = 95/134 (70%)
 Frame = +1

Query: 241  EPKNFRQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLD 420
            EP N R A+  P W  +M  E  AL +N T+  VP    M+++G +WV+K KLK DG+LD
Sbjct: 1004 EPHNIRDALAHPGWKAAMDEELQALHTNKTWVLVPRTSNMHVIGSKWVFKPKLKPDGSLD 1063

Query: 421  KFKSRLVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYL 600
            + K+R+VA+GY Q+DG+D  ETFS V+K  T R++L++AL   W +RQLDV NAFLHG +
Sbjct: 1064 RLKARVVAKGYHQVDGLDYTETFSPVIKPGTIRMVLTIALVKKWPIRQLDVKNAFLHGLI 1123

Query: 601  NEDVYMKQPPGFVN 642
            +ED++M+QPPG  +
Sbjct: 1124 SEDIHMEQPPGMAD 1137



 Score =  139 bits (351), Expect(3) = e-117
 Identities = 68/156 (43%), Positives = 103/156 (66%)
 Frame = +2

Query: 1256 GSLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRS 1435
            G++  G+ FT      L A+SD+DWAG    R+S  GYC F+G N++   +KKQ TISRS
Sbjct: 1340 GTIDIGLHFTSHTTLDLCAFSDADWAGCLTTRRSITGYCTFLGGNIISWCAKKQHTISRS 1399

Query: 1436 STEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIE 1615
            STEAEY+A+A T  E+  +S++L +    +++   LY +N  A  +A N VFHAR+KHIE
Sbjct: 1400 STEAEYRAMAHTTAELTWMSFILNDFHIPLASTPTLYYDNTSALHMAINPVFHARSKHIE 1459

Query: 1616 IDFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLPK 1723
            +D+H +R+ +A+G + T ++ T  ++AD FTK + K
Sbjct: 1460 LDYHFVRERVALGLLVTQHISTEKQVADLFTKPMSK 1495


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  164 bits (414), Expect(3) = e-117
 Identities = 88/179 (49%), Positives = 115/179 (64%)
 Frame = +1

Query: 106  PMHTKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWV 285
            PM T++K+GISK+K                    + F++ +    EP  F QA+KD  WV
Sbjct: 689  PMVTRAKNGISKKK--------------------VYFSSHIS---EPTTFTQAVKDSNWV 725

Query: 286  RSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQID 465
             +M  E  AL  N+T+  VP     NI+GC+WVYK K K DGT+D++K+RLVAQG+TQ  
Sbjct: 726  LAMEKEFSALQRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTL 785

Query: 466  GVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGFVN 642
            G++  ETFS VVK +T RIIL++ALS  W V QLDV NAFLHG L E V+M+QPPGF+N
Sbjct: 786  GLBYFETFSPVVKASTIRIILAVALSFNWSVHQLDVQNAFLHGDLEEHVFMQQPPGFIN 844



 Score =  158 bits (399), Expect(3) = e-117
 Identities = 92/204 (45%), Positives = 120/204 (58%), Gaps = 1/204 (0%)
 Frame = +3

Query: 642  SDHPDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXX 821
            S +P +VCKL K+LY LKQA R W+ + S  +L  GF  SR D+SMF        +    
Sbjct: 845  SQYPSHVCKLNKALYGLKQAPRAWYNKLSTSLLGWGFQASRADSSMFIHHSTHDVLILLI 904

Query: 822  XXXXXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLF-LTQNKYS 998
                    G S+ Q++ FI  L + FA++DLG ++YFLGI+      S T+F L+Q+KY+
Sbjct: 905  YVDDILVTGSSSAQVSSFITRLNSSFALRDLGYVNYFLGIEVV---RSGTMFHLSQHKYT 961

Query: 999  LELLKKYDMLECKPCKTPVAPGKRASLYDGTLLQDAASYRSLVGDLQYLTMSRPDLSFAV 1178
             +LL +  ML+ KP  TP   G+  S  DG    DA  YRS VG LQYLT++RPD+SFAV
Sbjct: 962  QDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDATLYRSTVGALQYLTLTRPDISFAV 1021

Query: 1179 NYISQFMHQPTDVHLQLAKRILRY 1250
            N   QFM  PT  H    KRILRY
Sbjct: 1022 NKACQFMATPTTTHWLAVKRILRY 1045



 Score =  150 bits (378), Expect(3) = e-117
 Identities = 77/159 (48%), Positives = 103/159 (64%)
 Frame = +2

Query: 1256 GSLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRS 1435
            G+L  GI+        +  Y+D+DWA  PD R+ST GY +F+GPNLV  SS KQ  +SRS
Sbjct: 1048 GTLSYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRS 1107

Query: 1436 STEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIE 1615
            S E+EY+ALA   +E+  + YVLQEL    S+P +L+C+N  AA LAAN VFHARTKHIE
Sbjct: 1108 SAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIE 1167

Query: 1616 IDFHTIRDLMAIGFVQTPYVPTLHKIADPFTKGLPKELF 1732
            +D H IRD +    +   Y+P+  ++AD FTK +    F
Sbjct: 1168 MDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQF 1206


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  174 bits (441), Expect(3) = e-117
 Identities = 91/202 (45%), Positives = 128/202 (63%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P +VCKL K+LY LKQA R WF R SK ++  GF  S+ D S+F+  +  + M       
Sbjct: 803  PHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLVYVD 862

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                   S       +  LK EFA+KDLG L YFLGI+ +   +   + L Q+KY+ +LL
Sbjct: 863  DIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNG--IVLNQDKYANDLL 920

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            KK  M++CKP  TP++  ++ SL++G+LL  +DA+ YRS+VG LQYLT++RPD++F+VN 
Sbjct: 921  KKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNK 980

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT VH    KRILRY
Sbjct: 981  VCQFLHAPTTVHWIAVKRILRY 1002



 Score =  172 bits (437), Expect(3) = e-117
 Identities = 93/174 (53%), Positives = 116/174 (66%)
 Frame = +1

Query: 115  TKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRSM 294
            T+ +SG+ K K   D  I + H           FTA      EP N  +A+KD  W  +M
Sbjct: 637  TRLQSGVRKEKVYTDGTIKYKHSW---------FTASG----EPTNDLEALKDKNWKLAM 683

Query: 295  TNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGVD 474
             +E+DALV N T+  VP   G NI+GC+WVYK K K+DGTLD++K+RLVA+G+ Q  G+D
Sbjct: 684  DSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGID 743

Query: 475  CAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGF 636
              +TFS VVK AT RIILSLA+S GW +RQLDV NAFLHGYL E+VYM QPPGF
Sbjct: 744  YEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGF 797



 Score =  124 bits (312), Expect(3) = e-117
 Identities = 59/130 (45%), Positives = 89/130 (68%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G++      +++S +SD+DWAG  D R+ST G+ +F+G NLV  +++KQ T+SRSSTE+E
Sbjct: 1010 GLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESE 1069

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKA+A    E+  V  +L EL       + ++C+NLGA  L+AN VFHARTKHIE+D+H 
Sbjct: 1070 YKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHF 1129

Query: 1631 IRDLMAIGFV 1660
            +R+ +   F+
Sbjct: 1130 VRERLLSRFI 1139


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  162 bits (409), Expect(3) = e-116
 Identities = 85/200 (42%), Positives = 124/200 (62%), Gaps = 2/200 (1%)
 Frame = +3

Query: 657  YVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXXXX 836
            YVCKL K+LY LKQA R W+ R S  + + GF  S++D S+F++ +  + M         
Sbjct: 1060 YVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDI 1119

Query: 837  XXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELLKK 1016
                 S +  N  +  L  EFA+KDLG L YFLGI+    ++   + LTQ KY++++LK+
Sbjct: 1120 IVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNG--IVLTQEKYAMDVLKR 1177

Query: 1017 YDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNYIS 1190
             +M +CK   TP++  ++ S ++G     +D+  YRSLVG LQYLT++RPDLSF+VN + 
Sbjct: 1178 VNMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVC 1237

Query: 1191 QFMHQPTDVHLQLAKRILRY 1250
            Q++H PT  H   AKRILRY
Sbjct: 1238 QYLHAPTTKHWAAAKRILRY 1257



 Score =  155 bits (391), Expect(3) = e-116
 Identities = 70/132 (53%), Positives = 97/132 (73%)
 Frame = +1

Query: 241  EPKNFRQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLD 420
            EP+   +A+ D  W  +M +E+ AL+ N T+  VP   G NI+ C+WVYK K K+DG+LD
Sbjct: 923  EPQTLHEALGDKNWKEAMDSEYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLD 982

Query: 421  KFKSRLVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYL 600
            ++K+R+VA+G+ Q  G+D  +TF+ VVK AT R ILS+A+S GW +RQLDV NAFLHG L
Sbjct: 983  RYKARVVAKGFKQRYGIDYEDTFNPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVL 1042

Query: 601  NEDVYMKQPPGF 636
             EDV+M+QPPG+
Sbjct: 1043 EEDVFMRQPPGY 1054



 Score =  152 bits (384), Expect(3) = e-116
 Identities = 74/149 (49%), Positives = 104/149 (69%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G+K +  +  ++SA+SD+DWAG  D R ST G+ VF+GPNLV  S++KQ T+SRSSTEAE
Sbjct: 1265 GLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAE 1324

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKALA    E+  +  +L ELG      + ++C+N+GA  + AN VFHARTKHIE+D+H 
Sbjct: 1325 YKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHF 1384

Query: 1631 IRDLMAIGFVQTPYVPTLHKIADPFTKGL 1717
            +R+ +A  F+Q  Y+ T  ++AD FTK L
Sbjct: 1385 VRERVARKFLQVEYISTKDQVADGFTKTL 1413


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  163 bits (413), Expect(3) = e-115
 Identities = 83/176 (47%), Positives = 114/176 (64%)
 Frame = +1

Query: 115  TKSKSGISKRKGLDDKWIAWLHRTALRHLIPIAFTALVDSLIEPKNFRQAMKDPRWVRSM 294
            T+ +SGI K K   D  + W                ++ S  EP+N + A+++  W  +M
Sbjct: 895  TRLQSGIRKEKVYTDGTVKW---------------GMLTSTGEPENLQDALQNNNWKCAM 939

Query: 295  TNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSRLVAQGYTQIDGVD 474
              E+ AL+ N+T+  VP   G N++ C+WVYK K K DG+LD++K+RLVA+G+ Q  G+D
Sbjct: 940  DAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 999

Query: 475  CAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVYMKQPPGFVN 642
              +TFS VVK AT RIILS+A+S GW +RQLDV NAFLHG L E+VYMKQPPG+ N
Sbjct: 1000 YEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYEN 1055



 Score =  154 bits (390), Expect(3) = e-115
 Identities = 83/202 (41%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            PDYVCKL K+LY LKQA R W+ R S  +   GF  S+ D S+F++ +  L +       
Sbjct: 1059 PDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVD 1118

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                       ++  +  L+ EFA+KDLG L YFLGI+ T       + ++Q KY+ +LL
Sbjct: 1119 DIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGG--ILMSQEKYASDLL 1176

Query: 1011 KKYDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
            K+ +M +CK   TP++  ++     GT+L   DA  YRS+VG LQYLT++R D++F+VN 
Sbjct: 1177 KRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNK 1236

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + QF+H PT  H    KRILRY
Sbjct: 1237 VCQFLHNPTTEHWAAVKRILRY 1258



 Score =  150 bits (378), Expect(3) = e-115
 Identities = 75/152 (49%), Positives = 102/152 (67%)
 Frame = +2

Query: 1265 GSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTE 1444
            G G++       ++S YSD+DWAG  D R+ST G+ V++G NLV  ++KKQ T+SRSSTE
Sbjct: 1264 GLGLRICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTE 1323

Query: 1445 AEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDF 1624
            AEYKALA    E+  V  +LQEL       + L+C+N+GA  L+ N VFHARTKHIE+D+
Sbjct: 1324 AEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVFHARTKHIEVDY 1383

Query: 1625 HTIRDLMAIGFVQTPYVPTLHKIADPFTKGLP 1720
            H +R+ +A   +Q  YV T  ++AD FTK LP
Sbjct: 1384 HFVRERVARKLLQVDYVSTNDQVADGFTKALP 1415


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  159 bits (401), Expect(3) = e-115
 Identities = 85/200 (42%), Positives = 123/200 (61%), Gaps = 2/200 (1%)
 Frame = +3

Query: 657  YVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXXXX 836
            YVCKL K+LY LKQA R W+ R S  + + GF  S++D S+F++ +  + +         
Sbjct: 660  YVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVTIFMLVYVDDI 719

Query: 837  XXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELLKK 1016
                 S    N  +  L  EFA+KDLG L YFLGI+    +D   + LTQ KY++++LK+
Sbjct: 720  IVASSSIVATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNDG--IVLTQEKYAMDVLKR 777

Query: 1017 YDMLECKPCKTPVAPGKRASLYDGTLL--QDAASYRSLVGDLQYLTMSRPDLSFAVNYIS 1190
             +M +CK   TP++  ++ S ++G  L  +D+  YRSLVG LQYLT++RPDLSF+VN + 
Sbjct: 778  VNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVC 837

Query: 1191 QFMHQPTDVHLQLAKRILRY 1250
            Q++H  T  H   AKRILRY
Sbjct: 838  QYLHAATTKHWVAAKRILRY 857



 Score =  156 bits (395), Expect(3) = e-115
 Identities = 71/132 (53%), Positives = 96/132 (72%)
 Frame = +1

Query: 241 EPKNFRQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLD 420
           EP+   +A+ D  W  +M +E+ AL+ N T+  VP   G NI+ C+WVYK K K+DG+LD
Sbjct: 523 EPQTLHEALGDKNWKEAMDSEYQALMKNKTWHRVPSKKGQNIIDCKWVYKVKRKADGSLD 582

Query: 421 KFKSRLVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYL 600
           ++K+RLVA+G+ Q  G+D  +TF  VVK AT R ILS+A+S GW +RQLDV NAFLHG L
Sbjct: 583 RYKARLVAKGFKQRYGIDYEDTFRPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVL 642

Query: 601 NEDVYMKQPPGF 636
            EDV+M+QPPG+
Sbjct: 643 EEDVFMRQPPGY 654



 Score =  152 bits (385), Expect(3) = e-115
 Identities = 74/149 (49%), Positives = 105/149 (70%)
 Frame = +2

Query: 1271 GIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRSSTEAE 1450
            G+K +  +  ++SA+SD+DWAG  D R+ST G+ VF+GPNLV  S++KQ T+SRSSTEAE
Sbjct: 865  GLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAE 924

Query: 1451 YKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIEIDFHT 1630
            YKALA    E+  +  +L ELG  V   + ++C+N+GA  + AN VFHARTKHIE+D+H 
Sbjct: 925  YKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHF 984

Query: 1631 IRDLMAIGFVQTPYVPTLHKIADPFTKGL 1717
            +R+ +A   +Q  Y+ T  ++AD FTK L
Sbjct: 985  VRERVARKLLQVEYISTKDQVADGFTKTL 1013


>ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846463 [Brachypodium
            distachyon]
          Length = 989

 Score =  161 bits (407), Expect(3) = e-115
 Identities = 78/152 (51%), Positives = 107/152 (70%)
 Frame = +2

Query: 1256 GSLGSGIKFTHGDCSVLSAYSDSDWAGFPDIRKSTAGYCVFMGPNLVV*SSKKQPTISRS 1435
            G + +G++F     + L  ++D+DWAG  D R+ST G+ VF+GPNLV  SS+KQPT+SRS
Sbjct: 816  GIVSTGLRFQRSSSTRLGIFTDADWAGCSDDRRSTGGFAVFLGPNLVSWSSRKQPTVSRS 875

Query: 1436 STEAEYKALALTATEVQRVSYVLQELGFHVSTPSILYCENLGAASLAANLVFHARTKHIE 1615
            STEAEYK LA    E   +  VL+ELG + S P +L+C+N+GA  L+AN VFHARTKHIE
Sbjct: 876  STEAEYKVLANGTAEAIWIQSVLKELGVYQSRPPVLWCDNIGATYLSANPVFHARTKHIE 935

Query: 1616 IDFHTIRDLMAIGFVQTPYVPTLHKIADPFTK 1711
            IDFH +R+ +A+G +    + T  ++AD FTK
Sbjct: 936  IDFHFVREKVALGALDVRSISTADQLADVFTK 967



 Score =  155 bits (393), Expect(3) = e-115
 Identities = 80/202 (39%), Positives = 126/202 (62%), Gaps = 2/202 (0%)
 Frame = +3

Query: 651  PDYVCKLRKSLYSLKQALRIWFERFSKFMLKNGFLQSRNDNSMFYFVEDGLKMXXXXXXX 830
            P +VCKL+++LY LKQ+ R W+   S  + + GF+ S+ D S+F F   G+ +       
Sbjct: 614  PQHVCKLQRALYGLKQSPRAWYACLSDKLHQLGFVASKADTSLFIFDHQGVMVYMLVYVD 673

Query: 831  XXXXXGCSNNQLNDFIHILKAEFAMKDLGTLSYFLGIKATFTSDSHTLFLTQNKYSLELL 1010
                 G S + ++  +  L   F +KDLG L YFLGI+A ++ +   + L Q+KY+L+LL
Sbjct: 674  DIVLAGSSLSAVDQLVATLSGSFPIKDLGRLEYFLGIEAAYSFEG--MVLMQHKYALDLL 731

Query: 1011 KKYDMLECKPCKTPVAPGKRAS--LYDGTLLQDAASYRSLVGDLQYLTMSRPDLSFAVNY 1184
             + +M +C+P  TP++   + +  L +   L+D+  YRSL+G LQYLT++RPDLSFAVN 
Sbjct: 732  HRANMEQCRPVTTPMSTSDKLTRDLGEPLGLEDSFKYRSLIGGLQYLTLTRPDLSFAVNK 791

Query: 1185 ISQFMHQPTDVHLQLAKRILRY 1250
            + Q++ QPT  H ++ KRILR+
Sbjct: 792  VCQYLSQPTTAHYEVVKRILRF 813



 Score =  151 bits (381), Expect(3) = e-115
 Identities = 71/127 (55%), Positives = 94/127 (74%)
 Frame = +1

Query: 256 RQAMKDPRWVRSMTNEHDALVSNDTYEEVPFLPGMNILGCRWVYKTKLKSDGTLDKFKSR 435
           R A+ +P W  +M  + DAL  N T+  VP  PG NI+G RW++KTK   DG +DK+K+R
Sbjct: 482 RMALTEPAWHAAMEAKFDALQKNQTWTLVPRPPGTNIVGSRWIFKTKFCPDGLVDKYKAR 541

Query: 436 LVAQGYTQIDGVDCAETFSHVVKFATARIILSLALSNGWFVRQLDVSNAFLHGYLNEDVY 615
           LVA+G+TQ  G+D  +TFS VVK  T R++LSLA S GW +RQ+DVSN+FLHG+L E+VY
Sbjct: 542 LVARGFTQQYGIDYHDTFSPVVKPVTVRLVLSLAASRGWCLRQVDVSNSFLHGFLTEEVY 601

Query: 616 MKQPPGF 636
           M+QPPGF
Sbjct: 602 MQQPPGF 608