BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00029988
         (1963 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   671   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...   665   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...   661   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   660   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   661   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              661   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...   657   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   654   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   654   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   654   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   652   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...   647   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   652   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   650   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   648   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   647   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      639   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   639   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   634   0.0  
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat...   634   0.0  

>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score =  671 bits (1731), Expect(2) = 0.0
 Identities = 320/388 (82%), Positives = 365/388 (94%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIHLANL++GGV+KL ++ R+ FV+NHL +I DSA+ PI+G RWWL+AEDPFQ
Sbjct: 622  KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 681

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L+SSSP++VISHLPIHQDGSCNGLQHYAALGR++LEAAAVNL+AGE+PA
Sbjct: 682  CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 741

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVH+IMKRD +KDP+ H  A LA +LIDQVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 742  DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 801

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G+ITDDR LF+A+CYAAKVT+TALGE+F+AARSIMGWLGDCAKVIASEN+
Sbjct: 802  EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 861

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K ERHLIRTSLQVLALQREG SV+++KQ++AFPPNFVHSLDGS
Sbjct: 862  PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTAFPPNFVHSLDGS 921

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGLHFAGVHDSFWTHACDVD+MN ILR+KFVELYNMPILENLLESFQTS
Sbjct: 922  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPILENLLESFQTS 981

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +PTLSFPPLP+RG+FDLE V ESPYFFN
Sbjct: 982  YPTLSFPPLPERGNFDLEEVLESPYFFN 1009



 Score =  134 bits (336), Expect(2) = 0.0
 Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+QRCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CRGVLEFA
Sbjct: 556  QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 615

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 616  EGRPLGKSGLRWLKI 630


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  665 bits (1717), Expect(2) = 0.0
 Identities = 317/388 (81%), Positives = 361/388 (93%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            ++GL W KIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ PI+G RWWL+AEDPFQ
Sbjct: 591  RSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQ 650

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS+SL+SSSP++V+S+LPIHQDGSCNGLQHYAALGRDSLEAAAVNL+AGE+PA
Sbjct: 651  CLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPA 710

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVH+IMKRD  KDPAT+  A LA LLIDQVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 711  DVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAR 770

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G+ITDDR+LF+A+CY AKVT+ ALGE+FQAAR+IMGWLGDCAKVIASEN+
Sbjct: 771  EQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQ 830

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PV+WTTPLGLPVVQPY K ERHLIRTSLQVLALQREGDSV+V+KQ++AFPPNFVHSLDGS
Sbjct: 831  PVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGS 890

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGLHFAGVHDSFWTHACDV+KMN ILREKFVELY+MP+LENL ES QTS
Sbjct: 891  HMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTS 950

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P+L FPPLP+RG+FDL  V +SPYFFN
Sbjct: 951  YPSLVFPPLPERGNFDLREVLKSPYFFN 978



 Score =  134 bits (338), Expect(2) = 0.0
 Identities = 63/75 (84%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            RERH+QRCD ELKLSVARKM++EEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 525  RERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 584

Query: 1781 EGRPL-RKAQSWLAL 1740
            EGRPL R    WL +
Sbjct: 585  EGRPLGRSGLHWLKI 599


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  661 bits (1705), Expect(2) = 0.0
 Identities = 317/389 (81%), Positives = 361/389 (92%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            ++GL W KIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ PI+G RWWL+AEDPFQ
Sbjct: 469  RSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQ 528

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS+SL+SSSP++V+S+LPIHQDGSCNGLQHYAALGRDSLEAAAVNL+AGE+PA
Sbjct: 529  CLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPA 588

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVH+IMKRD  KDPAT+  A LA LLIDQVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 589  DVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAR 648

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G+ITDDR+LF+A+CY AKVT+ ALGE+FQAAR+IMGWLGDCAKVIASEN+
Sbjct: 649  EQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQ 708

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDS-VDVKKQKSAFPPNFVHSLDG 860
            PV+WTTPLGLPVVQPY K ERHLIRTSLQVLALQREGDS V+V+KQ++AFPPNFVHSLDG
Sbjct: 709  PVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDG 768

Query: 859  SHMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQT 680
            SHMMMTAVACRDAGLHFAGVHDSFWTHACDV+KMN ILREKFVELY+MP+LENL ES QT
Sbjct: 769  SHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQT 828

Query: 679  SFPTLSFPPLPDRGDFDLENVHESPYFFN 593
            S+P+L FPPLP+RG+FDL  V +SPYFFN
Sbjct: 829  SYPSLVFPPLPERGNFDLREVLKSPYFFN 857



 Score =  134 bits (338), Expect(2) = 0.0
 Identities = 63/75 (84%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            RERH+QRCD ELKLSVARKM++EEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 403  RERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 462

Query: 1781 EGRPL-RKAQSWLAL 1740
            EGRPL R    WL +
Sbjct: 463  EGRPLGRSGLHWLKI 477


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  660 bits (1704), Expect(2) = 0.0
 Identities = 315/388 (81%), Positives = 363/388 (93%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIHLANL++GGV+KL ++ R+ FV+NHL +I DSA+ PI+G RWWL+AEDPFQ
Sbjct: 625  KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NL+++L+SSSP++VISHLPIHQDGSCNGLQHYAALGR++LEAAAVNL+AGE+PA
Sbjct: 685  CLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVH+IMKRD +KD + H  A LA +LIDQVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 745  DVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G+ITDDR LF+A+CYAAKVT+TALGE+F+AARSIMGWLGDCAKVIASEN+
Sbjct: 805  EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K ERHLIRTSLQVLALQREG+ V+++KQ++AFPPNFVHSLDGS
Sbjct: 865  PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGS 924

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGLHFAGVHDSFWTHACDVD+MN ILR+KFVELYNMP+LENLLESFQTS
Sbjct: 925  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS 984

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +PTLSFP LP+RG+FDLE V ESPYFFN
Sbjct: 985  YPTLSFPSLPERGNFDLEEVLESPYFFN 1012



 Score =  134 bits (336), Expect(2) = 0.0
 Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+QRCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CRGVLEFA
Sbjct: 559  QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 619  EGRPLGKSGLRWLKI 633


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  661 bits (1706), Expect(2) = 0.0
 Identities = 319/388 (82%), Positives = 356/388 (91%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KI LANLYAGGV+KL Y+ R+ FVDNHLDD+ DSA  P++G RWWL+AEDPFQ
Sbjct: 592  KSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQ 651

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++LRSSSP+TVISHLPIHQDGSCNGLQHYAALGR+SLEA+AVNL+AGE+PA
Sbjct: 652  CLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPA 711

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIAARVH+IMKRD +KDPAT   A LA +LI QVDRKLVKQTVMTSVYGVTY+GAR
Sbjct: 712  DVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAR 771

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITD+RLLF+A+CYAAKVT+ ALGE+FQAAR IM WLG+CAKVIASEN+
Sbjct: 772  EQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQ 831

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PV+WTTPLGLPV+QPY K ERHLIRTSLQVLALQREG  V ++KQ++AFPPNFVHSLDGS
Sbjct: 832  PVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGS 891

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGL FAGVHDSFWTHACDVDKMN ILREKFVELY+MPILENLLESFQTS
Sbjct: 892  HMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTS 951

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
             PTL+FPPLPDRG+FDL  V ESPYFFN
Sbjct: 952  HPTLTFPPLPDRGNFDLREVLESPYFFN 979



 Score =  132 bits (333), Expect(2) = 0.0
 Identities = 62/75 (82%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+ RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 526  QERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 585

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 586  EGRPLGKSGLRWLKI 600


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  661 bits (1706), Expect(2) = 0.0
 Identities = 319/388 (82%), Positives = 356/388 (91%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KI LANLYAGGV+KL Y+ R+ FVDNHLDD+ DSA  P++G RWWL+AEDPFQ
Sbjct: 421  KSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQ 480

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++LRSSSP+TVISHLPIHQDGSCNGLQHYAALGR+SLEA+AVNL+AGE+PA
Sbjct: 481  CLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPA 540

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIAARVH+IMKRD +KDPAT   A LA +LI QVDRKLVKQTVMTSVYGVTY+GAR
Sbjct: 541  DVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAR 600

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITD+RLLF+A+CYAAKVT+ ALGE+FQAAR IM WLG+CAKVIASEN+
Sbjct: 601  EQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQ 660

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PV+WTTPLGLPV+QPY K ERHLIRTSLQVLALQREG  V ++KQ++AFPPNFVHSLDGS
Sbjct: 661  PVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGS 720

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGL FAGVHDSFWTHACDVDKMN ILREKFVELY+MPILENLLESFQTS
Sbjct: 721  HMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTS 780

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
             PTL+FPPLPDRG+FDL  V ESPYFFN
Sbjct: 781  HPTLTFPPLPDRGNFDLREVLESPYFFN 808



 Score =  132 bits (333), Expect(2) = 0.0
 Identities = 62/75 (82%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+ RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 355  QERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 414

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 415  EGRPLGKSGLRWLKI 429


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  657 bits (1695), Expect(2) = 0.0
 Identities = 315/388 (81%), Positives = 353/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIHLANLYAGGV+KL YE R+ FVDNH+DDI DSA  P++G RWWL+AEDP Q
Sbjct: 589  KSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQ 648

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L S SP+TVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNL+ G++PA
Sbjct: 649  CLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPA 708

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIAARVH+IMKRD +KDP T   A LA +L++Q+DRKLVKQTVMTSVYGVTYVGAR
Sbjct: 709  DVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVTYVGAR 768

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITDDRLLF+A+CYAAKVT+ ALGE+FQAAR IM WLGDCAKVIASEN+
Sbjct: 769  EQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQ 828

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K ERHLIRTSLQVLALQRE +SVD++KQ++AFPPNFVHSLDGS
Sbjct: 829  PVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVHSLDGS 888

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTA+ACRDAGL FAGVHDSFWTH CDVD+MN ILREKFVELY+MPILE+LLESFQ S
Sbjct: 889  HMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLLESFQAS 948

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FPPLP+RGDFDL  V ESPYFFN
Sbjct: 949  YPALTFPPLPERGDFDLLQVLESPYFFN 976



 Score =  136 bits (342), Expect(2) = 0.0
 Identities = 64/75 (85%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+QRCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 523  QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 582

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 583  EGRPLGKSGLRWLKI 597


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  654 bits (1686), Expect(2) = 0.0
 Identities = 312/388 (80%), Positives = 356/388 (91%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GL W KIHLANLYAGGV+KL Y+ER+ FVD+HLD+I DSA  P++G RWWL+AEDPFQ
Sbjct: 588  KSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQ 647

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAACMNLS++L+SS+P+TVIS+LPIHQDGSCNGLQHYAALGRD+LEAAAVNL+AGE+PA
Sbjct: 648  CLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPA 707

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIAARVH IM RD SKDP T+  A LA LLIDQVDRKLVKQTVMTSVYGVTY+GAR
Sbjct: 708  DVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAR 767

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G I+DDRL F ASCYAAKVT++ALGE+F+AAR IMGWLGDCAKVIA +N+
Sbjct: 768  EQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQ 827

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K ERHLIRTSLQVLALQREG+ VDV+KQ++AFPPNFVHSLDGS
Sbjct: 828  PVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGS 887

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMM+TA+ACRDAGL FAGVHDSFWTHACDVD+MNLILREKFVELY+MP+LE+LLE F+T+
Sbjct: 888  HMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETT 947

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FP LP RGDFDL+ V +SPYFFN
Sbjct: 948  YPGLTFPSLPGRGDFDLQEVLKSPYFFN 975



 Score =  135 bits (339), Expect(2) = 0.0
 Identities = 63/75 (84%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +E H+QRCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 522  QELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 581

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 582  EGRPLGKSGLHWLKI 596


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  654 bits (1686), Expect(2) = 0.0
 Identities = 312/388 (80%), Positives = 356/388 (91%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GL W KIHLANLYAGGV+KL Y+ER+ FVD+HLD+I DSA  P++G RWWL+AEDPFQ
Sbjct: 588  KSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQ 647

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAACMNLS++L+SS+P+TVIS+LPIHQDGSCNGLQHYAALGRD+LEAAAVNL+AGE+PA
Sbjct: 648  CLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPA 707

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIAARVH IM RD SKDP T+  A LA LLIDQVDRKLVKQTVMTSVYGVTY+GAR
Sbjct: 708  DVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAR 767

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G I+DDRL F ASCYAAKVT++ALGE+F+AAR IMGWLGDCAKVIA +N+
Sbjct: 768  EQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQ 827

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K ERHLIRTSLQVLALQREG+ VDV+KQ++AFPPNFVHSLDGS
Sbjct: 828  PVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGS 887

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMM+TA+ACRDAGL FAGVHDSFWTHACDVD+MNLILREKFVELY+MP+LE+LLE F+T+
Sbjct: 888  HMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETT 947

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FP LP RGDFDL+ V +SPYFFN
Sbjct: 948  YPGLTFPSLPGRGDFDLQEVLKSPYFFN 975



 Score =  135 bits (339), Expect(2) = 0.0
 Identities = 63/75 (84%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +E H+QRCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 522  QELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 581

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 582  EGRPLGKSGLHWLKI 596


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  654 bits (1688), Expect(2) = 0.0
 Identities = 311/388 (80%), Positives = 353/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIHLANLY+GGV+KL Y+ R+ FVDNH+DDI DSA  P++G RWWL+AEDP Q
Sbjct: 586  KSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQ 645

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L S SP+TVISHLPIHQDGSCNGLQHYAALGRD+LEAAAVNL+AGE+PA
Sbjct: 646  CLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPA 705

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVHDIMKRD +KDP T+  A LA +L++Q+DRKLVKQTVMTSVYGVTYVGAR
Sbjct: 706  DVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVTYVGAR 765

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITDDRLLF+A+CYAAKVT+ ALGE+FQAAR IM WLGDCAKVIASEN+
Sbjct: 766  EQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQ 825

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K ERHLIRTSLQVLALQRE + VDV+KQ++AFPPNFVHSLDGS
Sbjct: 826  PVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVHSLDGS 885

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTA+ACRDAG+ FAGVHDSFWTHACDVD+MN ILRE FVELY+ PILENLLESFQ +
Sbjct: 886  HMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPILENLLESFQAA 945

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FPPLP+RGDFDL+ V +SPYFFN
Sbjct: 946  YPELTFPPLPERGDFDLQEVLKSPYFFN 973



 Score =  134 bits (336), Expect(2) = 0.0
 Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+QRCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 520  QERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 579

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 580  EGRPLGKSGLRWLKI 594


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score =  652 bits (1682), Expect(2) = 0.0
 Identities = 312/388 (80%), Positives = 354/388 (91%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW K+HLA+LYAGG++KL Y+ R+ FV+NH+DDILDSA  P++G RWWL+AEDP Q
Sbjct: 628  KSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQ 687

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L+S SP+TVISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AGE+PA
Sbjct: 688  CLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPA 747

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVY+EIA RV  I++ D +KDPAT   A LA LLIDQVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 748  DVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAR 807

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G I DDRLLF+ASCYAAKVT+ ALGE+FQAAR  M WLGDCAKVIASEN+
Sbjct: 808  EQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQ 867

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREGD+V+V+KQ++AFPPNFVHSLDGS
Sbjct: 868  PVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGS 927

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGLHFAGVHDSFWTHACDVD+MN ILREKFVELY+MPILE+LLESFQ S
Sbjct: 928  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQES 987

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FPPLP RGDFDL+ V ESPYFFN
Sbjct: 988  YPALTFPPLPKRGDFDLQEVLESPYFFN 1015



 Score =  131 bits (330), Expect(2) = 0.0
 Identities = 59/68 (86%), Positives = 64/68 (94%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +E H+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFA
Sbjct: 562  QELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 621

Query: 1781 EGRPLRKA 1758
            EGRPL K+
Sbjct: 622  EGRPLGKS 629


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score =  647 bits (1669), Expect(2) = 0.0
 Identities = 308/388 (79%), Positives = 352/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIH+ANLY GGV+KL Y++RV FV+N++ +I DSA   ++G RWWL AEDPFQ
Sbjct: 554  KSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNRWWLKAEDPFQ 613

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NL ++L+S SP+TVISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG++P+
Sbjct: 614  CLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDKPS 673

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVH+IMKRD  KDP T   A +A +LI QVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 674  DVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMTSVYGVTYVGAR 733

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITDD+LLFSA+CYAAKVT+ ALGE+FQAAR+IM WLGDCAK+IASENE
Sbjct: 734  EQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAWLGDCAKIIASENE 793

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREGDSV+V+KQ++AFPPNFVHSLDGS
Sbjct: 794  PVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGS 853

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN ILR+KFV+LY+MPILENLLESF+TS
Sbjct: 854  HMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYSMPILENLLESFETS 913

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +PTL FPPLP+RGDF LE V ESPYFFN
Sbjct: 914  YPTLKFPPLPNRGDFLLEQVIESPYFFN 941



 Score =  136 bits (342), Expect(2) = 0.0
 Identities = 64/75 (85%), Positives = 68/75 (90%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+QRCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 488  QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 547

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 548  EGRPLGKSGLRWLKI 562


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score =  652 bits (1683), Expect(2) = 0.0
 Identities = 310/388 (79%), Positives = 355/388 (91%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIHLANLY+GGV+KL ++ R+ FV+NHL +I DSA+ P++GKRWWL AEDPFQ
Sbjct: 495  KSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQ 554

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L S+SP+TVISHLPIHQDGSCNGLQHYAALGRD+LEAAAVNL+A E+P+
Sbjct: 555  CLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAAEKPS 614

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVH+I++RD +KDPAT+  A LA +L+DQVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 615  DVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAR 674

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G+ITDDRLLFSA+CY AKVT+TALGE+FQAAR IM WLGDCAK+IASE++
Sbjct: 675  EQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQ 734

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PV+WTTPLGLPVVQPY K ERHLI+TSLQ+LALQREG SV V+KQ++AFPPNFVHSLDGS
Sbjct: 735  PVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGS 794

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGL FAGVHDSFWTHA DVD MN ILREKFVELYNMPILENLLE FQTS
Sbjct: 795  HMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILENLLEDFQTS 854

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +PTL FPPLP+RG+FDL+ V  SPYFFN
Sbjct: 855  YPTLQFPPLPERGNFDLQKVLRSPYFFN 882



 Score =  130 bits (328), Expect(2) = 0.0
 Identities = 61/75 (81%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HL HLSSDLCRGVLEF 
Sbjct: 429  QERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFE 488

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 489  EGRPLGKSGLRWLKI 503


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score =  650 bits (1676), Expect(2) = 0.0
 Identities = 311/388 (80%), Positives = 353/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW K+HLA+LYAGG++KL Y+ R+ FV+NH+DDILDSA  P++G RWWL+AEDP Q
Sbjct: 620  KSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQ 679

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++++S SP+TVISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AGE+PA
Sbjct: 680  CLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPA 739

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVY+EIA RV  I++ D +KDPAT   A LA LLIDQVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 740  DVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAR 799

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G I DDRLLF+ASCYAAKVT+ ALGE+FQAAR  M WLGDCAKVIASEN+
Sbjct: 800  EQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQ 859

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREGD+V+V+KQ++AFPPNFVHSLDGS
Sbjct: 860  PVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGS 919

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGLHFAGVHDSFWTHACDVD+MN ILREKFVELY+MPILE+LLESFQ S
Sbjct: 920  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQES 979

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FPPLP RGDFDL  V ESPYFFN
Sbjct: 980  YPALTFPPLPKRGDFDLREVLESPYFFN 1007



 Score =  130 bits (327), Expect(2) = 0.0
 Identities = 58/68 (85%), Positives = 64/68 (94%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +E H+QRCD ELKLSVARK++DEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFA
Sbjct: 554  QELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 613

Query: 1781 EGRPLRKA 1758
            EGRPL K+
Sbjct: 614  EGRPLGKS 621


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  648 bits (1671), Expect(2) = 0.0
 Identities = 312/388 (80%), Positives = 352/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIHLA+LYAGG++KL Y+ R+ FV+NH+DDILDSA  P++G RWWL+AEDPFQ
Sbjct: 590  KSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQ 649

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L+SSSP+TV SHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AG++PA
Sbjct: 650  CLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPA 709

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVY+EIA RV  I++ D  KDPAT   A LA LLIDQVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 710  DVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAR 769

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G I DDRLLF+ASCYAAKVT+ ALGE+FQAAR  M WLGDCAKVIASEN+
Sbjct: 770  EQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQ 829

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREGD+V+V+KQ++AFPPNFVHSLDGS
Sbjct: 830  PVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGS 889

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN ILREKFVELY+MPILE+LLESFQ S
Sbjct: 890  HMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNS 949

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FPPLP RGDFDL  V ESPYFFN
Sbjct: 950  YPALTFPPLPKRGDFDLVEVLESPYFFN 977



 Score =  132 bits (331), Expect(2) = 0.0
 Identities = 61/75 (81%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +E H+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFA
Sbjct: 524  QELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 583

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 584  EGRPLGKSGLRWLKI 598


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  647 bits (1668), Expect(2) = 0.0
 Identities = 310/388 (79%), Positives = 354/388 (91%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GL W KIHLANLY+GGV+KL ++ R+ FV+NHL +I DSA+ P++GKRWWL+AEDPFQ
Sbjct: 595  KSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQ 654

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L+S+SP+TVISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+A E+P+
Sbjct: 655  CLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNLVAAEKPS 714

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RVH+I++RD +KDPAT+  A LA +LID+VDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 715  DVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAR 774

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G+ITDDR+LFSA+CYAAKVT+TALGE+FQAAR IMGWLGDCAKVIASE++
Sbjct: 775  EQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAKVIASEDQ 834

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K +RHLIRTSLQVLALQREG SV V+KQ++AFPPNFVHSLDGS
Sbjct: 835  PVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGS 894

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDA L FAGVHDSFWTHA D D MN ILREKFVELYNMPILENLLE FQTS
Sbjct: 895  HMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILENLLEDFQTS 954

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +PTL FP LP+RG+FDL+ V  SPYFFN
Sbjct: 955  YPTLKFPSLPERGNFDLQEVLRSPYFFN 982



 Score =  132 bits (333), Expect(2) = 0.0
 Identities = 62/75 (82%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +ERH+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HL HLSSDLCRGVLEFA
Sbjct: 529  QERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFA 588

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 589  EGRPLGKSGLCWLKI 603


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  639 bits (1649), Expect(2) = 0.0
 Identities = 306/388 (78%), Positives = 348/388 (89%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K GL W KIHLAN+YAGGVDKL YE R  FV+NHL+++ DSA  PI+G RWWLSAEDPFQ
Sbjct: 602  KTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQ 661

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC++L+ +L SSSP++ IS+LPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGE PA
Sbjct: 662  CLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEEPA 721

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEIA RV +IM++D  KDP T   A LA +L+DQVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 722  DVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYGVTFVGAR 781

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITDDRLLFSA+CY+AKVTM+ALG++FQAAR IM WLGDCAKVIASEN+
Sbjct: 782  EQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAKVIASENQ 841

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K +RHLI+TSLQVLALQ+EG+ ++VKKQ++AFPPN+VHSLDG+
Sbjct: 842  PVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNYVHSLDGT 901

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGL FAGVHDSFWTHACDV+KMN ILR KFVELYNMPILENLLESFQT+
Sbjct: 902  HMMMTAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYNMPILENLLESFQTA 961

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P  +FPPLP+RGDFDLE V ESPYFFN
Sbjct: 962  YPASTFPPLPERGDFDLEEVLESPYFFN 989



 Score =  133 bits (334), Expect(2) = 0.0
 Identities = 62/75 (82%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            RERHA RCD+ELK+SVA+KMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA
Sbjct: 536  RERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 595

Query: 1781 EGRPLRK-AQSWLAL 1740
             GRPL K    WL +
Sbjct: 596  SGRPLGKTGLHWLKI 610


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  639 bits (1649), Expect(2) = 0.0
 Identities = 308/388 (79%), Positives = 350/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GLRW KIHLA+LYAGGV+KL Y+ R+ FV+NH+ DILDSA  P++G RWWL+AEDPFQ
Sbjct: 590  KSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQ 649

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+NLS++L+SSSP+TVISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AGE+PA
Sbjct: 650  CLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPA 709

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVY+EIA RV  I++ D  KDPA    A LA LLIDQVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 710  DVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAR 769

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G I DDRLLF+ASCYAAKVT+ ALGE+FQAAR  M WLGDCAKVIA EN+
Sbjct: 770  EQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQ 829

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRWTTPLGLPVVQPY K +RH+IRTSLQ+LALQREGD+V+V+KQ++AFPPNFVHSLDGS
Sbjct: 830  PVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGS 889

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN ILREKFVELY++PILE+LLE+FQ S
Sbjct: 890  HMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKS 949

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L+FPPLP RGDF+L  V ESPYFFN
Sbjct: 950  YPALTFPPLPKRGDFNLREVLESPYFFN 977



 Score =  132 bits (331), Expect(2) = 0.0
 Identities = 61/75 (81%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            +E H+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFA
Sbjct: 524  QELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 583

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 584  EGRPLGKSGLRWLKI 598


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  634 bits (1635), Expect(2) = 0.0
 Identities = 301/388 (77%), Positives = 350/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GL W KIHLANLYAGGV+KL ++ R+ FV+NHLDDI+DSA+ PI GKRWWL AEDPFQ
Sbjct: 606  KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+ L+ +L+S SPY+VISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGE+PA
Sbjct: 666  CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEI+ RVH+IMK+D SKDP ++  A LA +LI QVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 726  DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITD+R+LF+A+CY+AKVT+ ALGE+F+AAR+IM WLGDCAK+IAS+N 
Sbjct: 786  EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRW TPLGLPVVQPY + ERHLIRTSLQVLALQREG++VDV+KQ++AFPPNFVHSLDG+
Sbjct: 846  PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACR+AGL+FAGVHDS+WTHACDVD MN ILREKFVELYN PILE+LL+SFQ S
Sbjct: 906  HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 965

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L FPP+P RGDFDL+ V +S YFFN
Sbjct: 966  YPNLVFPPVPKRGDFDLKEVLKSQYFFN 993



 Score =  135 bits (339), Expect(2) = 0.0
 Identities = 63/75 (84%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            RERH+ RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG LEFA
Sbjct: 540  RERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFA 599

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 600  EGRPLGKSGLHWLKI 614


>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
            gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 990

 Score =  634 bits (1634), Expect(2) = 0.0
 Identities = 301/388 (77%), Positives = 350/388 (90%)
 Frame = -1

Query: 1756 KAGLRWPKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRPIDGKRWWLSAEDPFQ 1577
            K+GL W KIHLANL+AGGV+KL ++ R+ FV+NHLDDI+DSA+ PI GKRWWL AEDPFQ
Sbjct: 603  KSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 662

Query: 1576 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERPA 1397
            CLAAC+ L+ +LRS SPY+VISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGE+PA
Sbjct: 663  CLAACVILTQALRSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 722

Query: 1396 DVYSEIAARVHDIMKRDCSKDPATHSAARLANLLIDQVDRKLVKQTVMTSVYGVTYVGAR 1217
            DVYSEI+ RVH+IMK+D SKDP ++  A LA +LI QVDRKLVKQTVMTSVYGVTYVGAR
Sbjct: 723  DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 782

Query: 1216 EQIKRRLMERGNITDDRLLFSASCYAAKVTMTALGEMFQAARSIMGWLGDCAKVIASENE 1037
            EQIKRRL E+G ITD+R+LF+A+CY+AKVT+ ALGE+F+AAR+IM WLGDCAK+IAS+N 
Sbjct: 783  EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 842

Query: 1036 PVRWTTPLGLPVVQPYRKPERHLIRTSLQVLALQREGDSVDVKKQKSAFPPNFVHSLDGS 857
            PVRW TPLGLPVVQPY + ERHLIRTSLQVLALQREG++VDV+KQ++AFPPNFVHSLDG+
Sbjct: 843  PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 902

Query: 856  HMMMTAVACRDAGLHFAGVHDSFWTHACDVDKMNLILREKFVELYNMPILENLLESFQTS 677
            HMMMTAVACR+AGL+FAGVHDS+WTHACDVD MN ILREKFVELYN PILE+LL+SFQ S
Sbjct: 903  HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 962

Query: 676  FPTLSFPPLPDRGDFDLENVHESPYFFN 593
            +P L FPP+P RGDFDL+ V +S YFFN
Sbjct: 963  YPNLVFPPVPKRGDFDLKEVLKSQYFFN 990



 Score =  135 bits (339), Expect(2) = 0.0
 Identities = 63/75 (84%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
 Frame = -3

Query: 1961 RERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFA 1782
            RERH+ RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG LEFA
Sbjct: 537  RERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFA 596

Query: 1781 EGRPLRKA-QSWLAL 1740
            EGRPL K+   WL +
Sbjct: 597  EGRPLGKSGLHWLKI 611