BLASTX nr result
ID: Papaver27_contig00029366
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Papaver27_contig00029366 (1010 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 80 5e-23 ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 86 1e-19 ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 76 8e-16 ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prun... 70 8e-16 emb|CBI40152.3| unnamed protein product [Vitis vinifera] 89 2e-15 ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 89 2e-15 ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 75 3e-15 ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 71 7e-14 ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu... 84 9e-14 ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, par... 84 9e-14 emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] 83 2e-13 ref|XP_001449252.1| hypothetical protein [Paramecium tetraurelia... 55 9e-13 ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 80 1e-12 ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 80 2e-12 ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 67 2e-12 gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 74 7e-11 ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 72 3e-10 gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 72 5e-10 ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 72 5e-10 gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 72 5e-10 >ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica] gi|462415343|gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica] Length = 1855 Score = 80.5 bits (197), Expect(3) = 5e-23 Identities = 44/99 (44%), Positives = 57/99 (57%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893 QW Q + K N + +R W SS G+WKNK RP G +D S LYT T Sbjct: 1647 QWGQHRGDQTKK---NRFEGARNWVSS-PGEWKNKNRPPKSPGMVNDNS--TMGALYTVT 1700 Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 RQRLD FTSEEQ LS ++ ++ ++R+IM QS DG+P Sbjct: 1701 RQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDP 1739 Score = 42.0 bits (97), Expect(3) = 5e-23 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 21/175 (12%) Frame = +2 Query: 263 TQSSQNEPRDSWGEQAEKANTTAGWNTKTQPS------QAEPDDSWGGLVEXXXXXXXXX 424 T +++ + +WG K N+T+ W T + DDS V+ Sbjct: 1444 TNTAREDAASAWGTNPAKENSTSTWGTTRANENDWCGREVGQDDSASLSVKKSSVLDTSS 1503 Query: 425 XXXXXSQAEPRDS-WGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEEN 601 + E S WG K NTT W ++D GH + A+ + + N Sbjct: 1504 AWATNTAREDAASAWGKHPAKENTTSTWGTTTASENDWCGRGVGHDDSASLSGKKSSVLN 1563 Query: 602 --GQW----------NQWSEPPKTETTNNKSAGTWGTSMAGEH--VNQSAXXMEP 724 W + W + P E T + TWGT+ A E+ + A +EP Sbjct: 1564 TSSVWATNTAREDATSAWGKNPAKENTTS----TWGTTTASENDWCGREAGKVEP 1614 Score = 33.1 bits (74), Expect(3) = 5e-23 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +3 Query: 39 SWG---GQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGWNT 173 SWG G+ + +NS K+ S D + +WG K NTT W T Sbjct: 1360 SWGTEKGKTQDSNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGT 1407 >ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa] gi|550343552|gb|EEE78905.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa] Length = 1920 Score = 85.9 bits (211), Expect(3) = 1e-19 Identities = 46/100 (46%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890 QW Q+ ++ F + + SRGWGS+N GDWKNK RP+ P N+SG++T Sbjct: 1727 QWGQQ----SREFKKDRFEGSRGWGSNN-GDWKNKRNRPSKPH------EDLNASGIFTT 1775 Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TRQRLD FTS+EQ LS+++ ++L+IR+IM Q+ DG+P Sbjct: 1776 TRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDP 1815 Score = 31.2 bits (69), Expect(3) = 1e-19 Identities = 25/141 (17%), Positives = 39/141 (27%) Frame = +2 Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXX 430 W + + + A + + GW K +QA+ WG Sbjct: 1572 WGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWG--------------- 1616 Query: 431 XXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENGQW 610 +E WG E W P+ + G E N E G+ Sbjct: 1617 -KPKSSENSQGWGLSKESGKEVHEWGV-------PNSAGGNGSETNNNNENQSLVEQGKE 1668 Query: 611 NQWSEPPKTETTNNKSAGTWG 673 + W K + +A WG Sbjct: 1669 SGWDN--KASSNQEGTASGWG 1687 Score = 26.6 bits (57), Expect(3) = 1e-19 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +3 Query: 27 DPNDSWGGQ--AEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGW 167 D + WG + + +A++ GW K P + + WG E + GW Sbjct: 1527 DGDKLWGKEVSSNQADTASGWGKPKSP---EISLGWGSTKESVKSDRGW 1572 >ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina] gi|557522591|gb|ESR33958.1| hypothetical protein CICLE_v10004129mg [Citrus clementina] Length = 1867 Score = 76.3 bits (186), Expect(3) = 8e-16 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%) Frame = +3 Query: 717 WSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTAT 893 W Q ++ P K +RGW SS+ G+WK K RP G +D S N+ +YT T Sbjct: 1672 WGQSRKEPFK--------KNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA--MYTVT 1720 Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007 RQRLD FTSEEQ LS+V+ I+ +IR+IM QS DG+ Sbjct: 1721 RQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGD 1758 Score = 30.8 bits (68), Expect(3) = 8e-16 Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 12/153 (7%) Frame = +2 Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGW--NTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424 W T+ Q S W E + AN TA W N + S + SW Sbjct: 1511 WGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGWDTKASWN------------- 1555 Query: 425 XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604 + D G VE N++ W A+ +D + W K + ++ + G Sbjct: 1556 ----TKALDKLDDVGSAVE--NSSSVWGAR---EDFSTKGWEDS-SKPSANEKSIVHQIG 1605 Query: 605 QWN----------QWSEPPKTETTNNKSAGTWG 673 WN W + TE +WG Sbjct: 1606 GWNVPDAKGTDDSSWGKQKLTENAKGTDDSSWG 1638 Score = 23.9 bits (50), Expect(3) = 8e-16 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%) Frame = +3 Query: 18 SQNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQ----------VEKA-----N 152 S + P WG +A S+ + + + P+ +WG + +EK N Sbjct: 1447 SASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1506 Query: 153 TTGGWNTRMQPS 188 GW T Q S Sbjct: 1507 PLSGWGTEAQDS 1518 >ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica] gi|462416248|gb|EMJ20985.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica] Length = 792 Score = 70.1 bits (170), Expect(2) = 8e-16 Identities = 41/99 (41%), Positives = 55/99 (55%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893 QW Q + K + + +R W SS G+WKNK RP G +D S LYT T Sbjct: 615 QWGQHRGDQTKKSRF---EGARNWVSS-PGEWKNKNRPPKSPGMVNDNS--TMGALYTVT 668 Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 R RLD FTSEE LS ++ ++ ++R+IM QS DG+P Sbjct: 669 RPRLDMFTSEEH-VLSNIEPVMRSLRRIMHQSGYNDGDP 706 Score = 41.2 bits (95), Expect(2) = 8e-16 Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 22/176 (12%) Frame = +2 Query: 263 TQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXXXXXS 442 T +++ + +WG K NTT+ W T T S+ + W G + S Sbjct: 412 TNTAREDAASAWGTNPAKENTTSTWGT-TTASENDWCGRWVGQDDSASLSVKKSSVLDTS 470 Query: 443 QA--------EPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEE 598 A + + G K N T W ++D GH + A+ + + Sbjct: 471 SAWATNTAREDAASACGKQPAKENATSTWGTTLASENDWCGRGVGHDDSASLSGKKSSVL 530 Query: 599 N--GQW----------NQWSEPPKTETTNNKSAGTWGTSMAGEH--VNQSAXXMEP 724 N W + W E P E T + TWGT+ A E+ + A +EP Sbjct: 531 NTSSVWATNTAREDATSAWGENPAKENTTS----TWGTTTASENDWCGREAGKVEP 582 >emb|CBI40152.3| unnamed protein product [Vitis vinifera] Length = 1890 Score = 89.4 bits (220), Expect = 2e-15 Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890 QW Q ++P + SRGWGS+NT +WKNK RPN PQG +D +++ G++TA Sbjct: 1681 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 1731 Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TRQR+D FTSEEQ L +V+ I+ +IR+IM Q+ DG+P Sbjct: 1732 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1771 >ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera] Length = 1830 Score = 89.4 bits (220), Expect = 2e-15 Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890 QW Q ++P + SRGWGS+NT +WKNK RPN PQG +D +++ G++TA Sbjct: 1621 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 1671 Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TRQR+D FTSEEQ L +V+ I+ +IR+IM Q+ DG+P Sbjct: 1672 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1711 >ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus sinensis] Length = 1865 Score = 75.5 bits (184), Expect(3) = 3e-15 Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 1/98 (1%) Frame = +3 Query: 717 WSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTAT 893 W Q ++ P K +RGW SS+ G+WK K RP G +D S N+ +YT T Sbjct: 1670 WGQSRKEPFK--------KNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA--MYTVT 1718 Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007 RQRLD FTSEEQ LS V+ I+ +IR+IM QS DG+ Sbjct: 1719 RQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGD 1756 Score = 29.6 bits (65), Expect(3) = 3e-15 Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 12/153 (7%) Frame = +2 Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGW--NTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424 W T+ Q S W E + AN TA W N + S + SW Sbjct: 1509 WGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGWDTKASW-------------- 1552 Query: 425 XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604 + D G VE N++ W A+ +D + W K + ++ + G Sbjct: 1553 ---KTKALDKLDDVGSAVE--NSSSVWGAR---EDFSTKGWEDS-SKPSANEKSIVHQIG 1603 Query: 605 QWNQ----------WSEPPKTETTNNKSAGTWG 673 WN W + TE +WG Sbjct: 1604 GWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWG 1636 Score = 23.9 bits (50), Expect(3) = 3e-15 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%) Frame = +3 Query: 18 SQNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQ----------VEKA-----N 152 S + P WG +A S+ + + + P+ +WG + +EK N Sbjct: 1445 SASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1504 Query: 153 TTGGWNTRMQPS 188 GW T Q S Sbjct: 1505 PLSGWGTEAQDS 1516 >ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria vesca subsp. vesca] Length = 1991 Score = 71.2 bits (173), Expect(2) = 7e-14 Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 11/109 (10%) Frame = +3 Query: 714 QWSQRKEPPAKPFA-WNTNKSS---------RGWGSSNTGDWKNKG-RPNNPQGTPDDQS 860 QW + E + W N S R WG N G+WK K RP G +D S Sbjct: 1779 QWDSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGP-NAGEWKGKNSRPAKSPGMVNDDS 1837 Query: 861 GWNSSGLYTATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007 + + +YTATRQRLD FTSEEQ LS ++ +L+IR+IM QS DG+ Sbjct: 1838 --SVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGD 1884 Score = 33.5 bits (75), Expect(2) = 7e-14 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 23/136 (16%) Frame = +2 Query: 287 RDSWGEQAEKANTTAGWN----------TKTQPSQAE-----------PDDSWG--GLVE 397 R SW +++ A++ W T QP AE PD S G GL + Sbjct: 1655 RHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEK 1714 Query: 398 XXXXXXXXXXXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTT 577 S P+ +WG + G W QK P+ SWG +K + T Sbjct: 1715 PASTNSQGSWGQQKSPEIPQGNWGQQTSPDISQGTWGQQKSPEMS-QGSWG--QQKPSDT 1771 Query: 578 AQNGKEENGQWNQWSE 625 +Q QW+ SE Sbjct: 1772 SQPATV--NQWDSQSE 1785 Score = 50.4 bits (119), Expect(2) = 1e-06 Identities = 33/141 (23%), Positives = 54/141 (38%) Frame = +2 Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXX 430 W T ++++ P +WG +A K + ++ W TKT A +WG E Sbjct: 1501 WGTAKTAAEDAP-SAWGVKAVKKDASSPWETKTATEDA--TTAWGRNNEKKHVLTAEVLE 1557 Query: 431 XXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENGQW 610 ++ + W G N W + ++ S G VE + +Q E W Sbjct: 1558 DSKAREDATSGW-GTENAENAQSTWRTSTESENGWSGRGGSKVESTDVQSQKAVENPKGW 1616 Query: 611 NQWSEPPKTETTNNKSAGTWG 673 N +S + T N +G WG Sbjct: 1617 NDFSAGVRKPQTENAGSG-WG 1636 Score = 29.6 bits (65), Expect(2) = 1e-06 Identities = 12/51 (23%), Positives = 24/51 (47%) Frame = +3 Query: 21 QNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGWNT 173 + D +WG + + ++ W T K+ ++D P +WG + + W T Sbjct: 1454 KEDAPSAWGTKTVREDAPSPWGTAKRATEDAP-AAWGAKSATEDAPPPWGT 1503 >ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa] gi|550346662|gb|EEE84012.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa] Length = 888 Score = 84.0 bits (206), Expect = 9e-14 Identities = 47/99 (47%), Positives = 64/99 (64%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893 QW Q+ + F N + SRGWGS+N G WK + RP+ P +D S SSGL+T T Sbjct: 759 QWGQQ----SGEFKKNRTEGSRGWGSNN-GHWKKRNRPSKPH---EDSS---SSGLFTMT 807 Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 RQ LD FTS+EQ LS+V+ ++L+IR+IM Q+ DG+P Sbjct: 808 RQWLDIFTSQEQDILSDVEPLMLSIRRIMHQTGYSDGDP 846 >ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, partial [Populus trichocarpa] gi|550305984|gb|ERP46156.1| hypothetical protein POPTR_1437s002101g, partial [Populus trichocarpa] Length = 142 Score = 84.0 bits (206), Expect = 9e-14 Identities = 46/92 (50%), Positives = 62/92 (67%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893 QW Q+ + F N + SRGWGS+N GDWK + RP+ P +D S SSGL+T T Sbjct: 61 QWGQQ----SGEFKKNRTEGSRGWGSNN-GDWKKRNRPSKPH---EDSS---SSGLFTTT 109 Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQS 989 RQRLD FTS+EQ LS+V+ ++L+IR+IM Q+ Sbjct: 110 RQRLDIFTSQEQDILSDVEPLMLSIRRIMHQT 141 >emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] Length = 1081 Score = 83.2 bits (204), Expect = 2e-13 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 1/93 (1%) Frame = +3 Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890 QW Q ++P + SRGWGS+NT +WKNK RPN PQG +D +++ G++TA Sbjct: 813 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 863 Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQS 989 TRQR+D FTSEEQ L +V+ I+ +IR+IM Q+ Sbjct: 864 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQA 896 >ref|XP_001449252.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|73807137|emb|CAI44473.1| RNA-binding protein involved in epigenetic programming of developmental genome rearrangements [Paramecium tetraurelia] gi|124416829|emb|CAK81855.1| unnamed protein product [Paramecium tetraurelia] Length = 1109 Score = 54.7 bits (130), Expect(2) = 9e-13 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Frame = +2 Query: 251 WNTKTQSSQNEPRDSWGE--QAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424 W T+ + + WG Q + A + GW + T + WG Sbjct: 318 WGQATEQPVQQS-NGWGNSTQEQPAQQSGGWGSTTTEQPPQQSGGWGSTTTEQPQQQGGW 376 Query: 425 XXXXXSQAEPRDS-WGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEEN 601 +Q +P+ WG E+ T+GGW + QP S WGG ++ N + G + Sbjct: 377 GSTTATQDQPQSGGWGSTTEQATTSGGWGSSDQPAQS-SGGWGGSSDQQNGNSWGGGSGD 435 Query: 602 GQ 607 GQ Sbjct: 436 GQ 437 Score = 46.2 bits (108), Expect(2) = 9e-13 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +3 Query: 24 NDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGW-NTRMQPSQ 191 N ++ WG K NS GGW + Q + WG E+ +GGW N+ QP+Q Sbjct: 224 NGDSNQWGNSENKDNSGGGWGSTSTNEQPAQSGGWGSTTEQPAQSGGWGNSTQQPAQ 280 >ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 2019 Score = 80.1 bits (196), Expect = 1e-12 Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 17/115 (14%) Frame = +3 Query: 717 WSQRKEPPAKPFAWNTNKSS----------------RGWGSSNTGDWKN-KGRPNNPQGT 845 W Q+K P W +NK S +GWG N G+WKN K RP G Sbjct: 1786 WEQQKSPEVS-HGWGSNKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGM 1843 Query: 846 PDDQSGWNSSGLYTATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 +D + N LYTA+ QRLD FTSEEQ L++++ I+ +IRK+M QS DG+P Sbjct: 1844 SNDDA--NLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1896 >ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 1959 Score = 79.7 bits (195), Expect = 2e-12 Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 4/102 (3%) Frame = +3 Query: 717 WSQRKEPPAKPFA--WNT-NKSSRGWGSSNTGDWKN-KGRPNNPQGTPDDQSGWNSSGLY 884 W KE + + W+ N+ S+GWG N G+WKN K RP G +D + N LY Sbjct: 1738 WGSHKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGMSNDDA--NLRALY 1794 Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TA+ QRLD FTSEEQ L++++ I+ +IRK+M QS DG+P Sbjct: 1795 TASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1836 >ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella] gi|482562261|gb|EOA26451.1| hypothetical protein CARUB_v10022497mg [Capsella rubella] Length = 1959 Score = 67.4 bits (163), Expect(2) = 2e-12 Identities = 39/102 (38%), Positives = 58/102 (56%) Frame = +3 Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884 ++ QW PAK F ++ S GW + +W+ G+ N+ P + N + ++ Sbjct: 1666 EKSQWGN----PAKKFP--SDGSYGGWSNGGGAEWR--GKRNHTPRPPRSED--NLAPMF 1715 Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TAT+QRLD FTSEEQ LS+V+ ++ +RKIM S DGEP Sbjct: 1716 TATKQRLDSFTSEEQELLSDVEPVMRTLRKIMHMSGYPDGEP 1757 Score = 32.3 bits (72), Expect(2) = 2e-12 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 3/142 (2%) Frame = +2 Query: 254 NTKTQSSQNEPRDSWGEQAEKANTTAGWNT---KTQPSQAEPDDSWGGLVEXXXXXXXXX 424 N K+++ SWG + + A W + + +EP +WG Sbjct: 1533 NMKSETETESNGASWGSSGKTKSGAAAWGSCDKNNMETNSEP-SAWGS----------QG 1581 Query: 425 XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604 +++ P SW G W+ + + W G+ +K N+ ++G G Sbjct: 1582 KKKAETESGPA-SW----------GAWDKKISETESGLAGW-GNGDKINSETESGAAAWG 1629 Query: 605 QWNQWSEPPKTETTNNKSAGTW 670 W Q S + TN W Sbjct: 1630 SWGQPSPTAADKDTNEDDGNPW 1651 >gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea] Length = 1902 Score = 74.3 bits (181), Expect = 7e-11 Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 11/96 (11%) Frame = +3 Query: 756 WNTNK--SSRGWGSSNTGDWKNKGRPNN---------PQGTPDDQSGWNSSGLYTATRQR 902 WN + RGWGSSNTG+WK++ N P+G DD + TATR+R Sbjct: 1691 WNKKQPEGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGPNDD----SPRVALTATRKR 1746 Query: 903 LDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 +D F +EE+ LSEV++++ +IR+IM QS DGEP Sbjct: 1747 MDEFPTEEKDVLSEVESLMQSIRRIMHQSGCVDGEP 1782 >ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] Length = 1947 Score = 72.4 bits (176), Expect = 3e-10 Identities = 43/102 (42%), Positives = 57/102 (55%) Frame = +3 Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884 +R QW PAK F SS GW + DWK G+ N+ P + N + ++ Sbjct: 1676 ERIQWGN----PAKKFP-----SSGGWSNGGGADWK--GKRNHTPRPPRSED--NLAPMF 1722 Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764 >gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana] Length = 1976 Score = 71.6 bits (174), Expect = 5e-10 Identities = 43/102 (42%), Positives = 56/102 (54%) Frame = +3 Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884 +R QW PAK F SS GW + DWK G N+ P + N + ++ Sbjct: 1676 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 1722 Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764 >ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana] gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName: Full=DNA-directed RNA polymerase V subunit 1; AltName: Full=DNA-directed RNA polymerase D subunit 1b; Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b; AltName: Full=DNA-directed RNA polymerase E subunit 1; Short=Nuclear RNA polymerase E 1; AltName: Full=Protein DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName: Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1; AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1 gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase alpha subunit [Arabidopsis thaliana] gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase large subunit [Arabidopsis thaliana] gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B [Arabidopsis thaliana] Length = 1976 Score = 71.6 bits (174), Expect = 5e-10 Identities = 43/102 (42%), Positives = 56/102 (54%) Frame = +3 Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884 +R QW PAK F SS GW + DWK G N+ P + N + ++ Sbjct: 1676 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 1722 Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764 >gb|AAB95289.1| unknown protein [Arabidopsis thaliana] Length = 839 Score = 71.6 bits (174), Expect = 5e-10 Identities = 43/102 (42%), Positives = 56/102 (54%) Frame = +3 Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884 +R QW PAK F SS GW + DWK G N+ P + N + ++ Sbjct: 539 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 585 Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010 TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P Sbjct: 586 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 627