BLASTX nr result
ID: Papaver27_contig00029366
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00029366
(1010 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 80 5e-23
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 86 1e-19
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 76 8e-16
ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prun... 70 8e-16
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 89 2e-15
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 89 2e-15
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 75 3e-15
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 71 7e-14
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu... 84 9e-14
ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, par... 84 9e-14
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] 83 2e-13
ref|XP_001449252.1| hypothetical protein [Paramecium tetraurelia... 55 9e-13
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 80 1e-12
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 80 2e-12
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 67 2e-12
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 74 7e-11
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 72 3e-10
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 72 5e-10
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 72 5e-10
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 72 5e-10
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 80.5 bits (197), Expect(3) = 5e-23
Identities = 44/99 (44%), Positives = 57/99 (57%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
QW Q + K N + +R W SS G+WKNK RP G +D S LYT T
Sbjct: 1647 QWGQHRGDQTKK---NRFEGARNWVSS-PGEWKNKNRPPKSPGMVNDNS--TMGALYTVT 1700
Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
RQRLD FTSEEQ LS ++ ++ ++R+IM QS DG+P
Sbjct: 1701 RQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDP 1739
Score = 42.0 bits (97), Expect(3) = 5e-23
Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 21/175 (12%)
Frame = +2
Query: 263 TQSSQNEPRDSWGEQAEKANTTAGWNTKTQPS------QAEPDDSWGGLVEXXXXXXXXX 424
T +++ + +WG K N+T+ W T + DDS V+
Sbjct: 1444 TNTAREDAASAWGTNPAKENSTSTWGTTRANENDWCGREVGQDDSASLSVKKSSVLDTSS 1503
Query: 425 XXXXXSQAEPRDS-WGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEEN 601
+ E S WG K NTT W ++D GH + A+ + + N
Sbjct: 1504 AWATNTAREDAASAWGKHPAKENTTSTWGTTTASENDWCGRGVGHDDSASLSGKKSSVLN 1563
Query: 602 --GQW----------NQWSEPPKTETTNNKSAGTWGTSMAGEH--VNQSAXXMEP 724
W + W + P E T + TWGT+ A E+ + A +EP
Sbjct: 1564 TSSVWATNTAREDATSAWGKNPAKENTTS----TWGTTTASENDWCGREAGKVEP 1614
Score = 33.1 bits (74), Expect(3) = 5e-23
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 39 SWG---GQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGWNT 173
SWG G+ + +NS K+ S D + +WG K NTT W T
Sbjct: 1360 SWGTEKGKTQDSNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGT 1407
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 85.9 bits (211), Expect(3) = 1e-19
Identities = 46/100 (46%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
QW Q+ ++ F + + SRGWGS+N GDWKNK RP+ P N+SG++T
Sbjct: 1727 QWGQQ----SREFKKDRFEGSRGWGSNN-GDWKNKRNRPSKPH------EDLNASGIFTT 1775
Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TRQRLD FTS+EQ LS+++ ++L+IR+IM Q+ DG+P
Sbjct: 1776 TRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDP 1815
Score = 31.2 bits (69), Expect(3) = 1e-19
Identities = 25/141 (17%), Positives = 39/141 (27%)
Frame = +2
Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXX 430
W + + + A + + GW K +QA+ WG
Sbjct: 1572 WGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWG--------------- 1616
Query: 431 XXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENGQW 610
+E WG E W P+ + G E N E G+
Sbjct: 1617 -KPKSSENSQGWGLSKESGKEVHEWGV-------PNSAGGNGSETNNNNENQSLVEQGKE 1668
Query: 611 NQWSEPPKTETTNNKSAGTWG 673
+ W K + +A WG
Sbjct: 1669 SGWDN--KASSNQEGTASGWG 1687
Score = 26.6 bits (57), Expect(3) = 1e-19
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 27 DPNDSWGGQ--AEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGW 167
D + WG + + +A++ GW K P + + WG E + GW
Sbjct: 1527 DGDKLWGKEVSSNQADTASGWGKPKSP---EISLGWGSTKESVKSDRGW 1572
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 76.3 bits (186), Expect(3) = 8e-16
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 717 WSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTAT 893
W Q ++ P K +RGW SS+ G+WK K RP G +D S N+ +YT T
Sbjct: 1672 WGQSRKEPFK--------KNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA--MYTVT 1720
Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007
RQRLD FTSEEQ LS+V+ I+ +IR+IM QS DG+
Sbjct: 1721 RQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGD 1758
Score = 30.8 bits (68), Expect(3) = 8e-16
Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 12/153 (7%)
Frame = +2
Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGW--NTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424
W T+ Q S W E + AN TA W N + S + SW
Sbjct: 1511 WGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGWDTKASWN------------- 1555
Query: 425 XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604
+ D G VE N++ W A+ +D + W K + ++ + G
Sbjct: 1556 ----TKALDKLDDVGSAVE--NSSSVWGAR---EDFSTKGWEDS-SKPSANEKSIVHQIG 1605
Query: 605 QWN----------QWSEPPKTETTNNKSAGTWG 673
WN W + TE +WG
Sbjct: 1606 GWNVPDAKGTDDSSWGKQKLTENAKGTDDSSWG 1638
Score = 23.9 bits (50), Expect(3) = 8e-16
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Frame = +3
Query: 18 SQNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQ----------VEKA-----N 152
S + P WG +A S+ + + + P+ +WG + +EK N
Sbjct: 1447 SASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1506
Query: 153 TTGGWNTRMQPS 188
GW T Q S
Sbjct: 1507 PLSGWGTEAQDS 1518
>ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica]
gi|462416248|gb|EMJ20985.1| hypothetical protein
PRUPE_ppa024567mg [Prunus persica]
Length = 792
Score = 70.1 bits (170), Expect(2) = 8e-16
Identities = 41/99 (41%), Positives = 55/99 (55%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
QW Q + K + + +R W SS G+WKNK RP G +D S LYT T
Sbjct: 615 QWGQHRGDQTKKSRF---EGARNWVSS-PGEWKNKNRPPKSPGMVNDNS--TMGALYTVT 668
Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
R RLD FTSEE LS ++ ++ ++R+IM QS DG+P
Sbjct: 669 RPRLDMFTSEEH-VLSNIEPVMRSLRRIMHQSGYNDGDP 706
Score = 41.2 bits (95), Expect(2) = 8e-16
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 22/176 (12%)
Frame = +2
Query: 263 TQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXXXXXS 442
T +++ + +WG K NTT+ W T T S+ + W G + S
Sbjct: 412 TNTAREDAASAWGTNPAKENTTSTWGT-TTASENDWCGRWVGQDDSASLSVKKSSVLDTS 470
Query: 443 QA--------EPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEE 598
A + + G K N T W ++D GH + A+ + +
Sbjct: 471 SAWATNTAREDAASACGKQPAKENATSTWGTTLASENDWCGRGVGHDDSASLSGKKSSVL 530
Query: 599 N--GQW----------NQWSEPPKTETTNNKSAGTWGTSMAGEH--VNQSAXXMEP 724
N W + W E P E T + TWGT+ A E+ + A +EP
Sbjct: 531 NTSSVWATNTAREDATSAWGENPAKENTTS----TWGTTTASENDWCGREAGKVEP 582
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 89.4 bits (220), Expect = 2e-15
Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
QW Q ++P + SRGWGS+NT +WKNK RPN PQG +D +++ G++TA
Sbjct: 1681 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 1731
Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TRQR+D FTSEEQ L +V+ I+ +IR+IM Q+ DG+P
Sbjct: 1732 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1771
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 89.4 bits (220), Expect = 2e-15
Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
QW Q ++P + SRGWGS+NT +WKNK RPN PQG +D +++ G++TA
Sbjct: 1621 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 1671
Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TRQR+D FTSEEQ L +V+ I+ +IR+IM Q+ DG+P
Sbjct: 1672 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1711
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 75.5 bits (184), Expect(3) = 3e-15
Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 717 WSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTAT 893
W Q ++ P K +RGW SS+ G+WK K RP G +D S N+ +YT T
Sbjct: 1670 WGQSRKEPFK--------KNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA--MYTVT 1718
Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007
RQRLD FTSEEQ LS V+ I+ +IR+IM QS DG+
Sbjct: 1719 RQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGD 1756
Score = 29.6 bits (65), Expect(3) = 3e-15
Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 12/153 (7%)
Frame = +2
Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGW--NTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424
W T+ Q S W E + AN TA W N + S + SW
Sbjct: 1509 WGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGWDTKASW-------------- 1552
Query: 425 XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604
+ D G VE N++ W A+ +D + W K + ++ + G
Sbjct: 1553 ---KTKALDKLDDVGSAVE--NSSSVWGAR---EDFSTKGWEDS-SKPSANEKSIVHQIG 1603
Query: 605 QWNQ----------WSEPPKTETTNNKSAGTWG 673
WN W + TE +WG
Sbjct: 1604 GWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWG 1636
Score = 23.9 bits (50), Expect(3) = 3e-15
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Frame = +3
Query: 18 SQNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQ----------VEKA-----N 152
S + P WG +A S+ + + + P+ +WG + +EK N
Sbjct: 1445 SASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1504
Query: 153 TTGGWNTRMQPS 188
GW T Q S
Sbjct: 1505 PLSGWGTEAQDS 1516
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 71.2 bits (173), Expect(2) = 7e-14
Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Frame = +3
Query: 714 QWSQRKEPPAKPFA-WNTNKSS---------RGWGSSNTGDWKNKG-RPNNPQGTPDDQS 860
QW + E + W N S R WG N G+WK K RP G +D S
Sbjct: 1779 QWDSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGP-NAGEWKGKNSRPAKSPGMVNDDS 1837
Query: 861 GWNSSGLYTATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007
+ + +YTATRQRLD FTSEEQ LS ++ +L+IR+IM QS DG+
Sbjct: 1838 --SVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGD 1884
Score = 33.5 bits (75), Expect(2) = 7e-14
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 23/136 (16%)
Frame = +2
Query: 287 RDSWGEQAEKANTTAGWN----------TKTQPSQAE-----------PDDSWG--GLVE 397
R SW +++ A++ W T QP AE PD S G GL +
Sbjct: 1655 RHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEK 1714
Query: 398 XXXXXXXXXXXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTT 577
S P+ +WG + G W QK P+ SWG +K + T
Sbjct: 1715 PASTNSQGSWGQQKSPEIPQGNWGQQTSPDISQGTWGQQKSPEMS-QGSWG--QQKPSDT 1771
Query: 578 AQNGKEENGQWNQWSE 625
+Q QW+ SE
Sbjct: 1772 SQPATV--NQWDSQSE 1785
Score = 50.4 bits (119), Expect(2) = 1e-06
Identities = 33/141 (23%), Positives = 54/141 (38%)
Frame = +2
Query: 251 WNTKTQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXX 430
W T ++++ P +WG +A K + ++ W TKT A +WG E
Sbjct: 1501 WGTAKTAAEDAP-SAWGVKAVKKDASSPWETKTATEDA--TTAWGRNNEKKHVLTAEVLE 1557
Query: 431 XXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENGQW 610
++ + W G N W + ++ S G VE + +Q E W
Sbjct: 1558 DSKAREDATSGW-GTENAENAQSTWRTSTESENGWSGRGGSKVESTDVQSQKAVENPKGW 1616
Query: 611 NQWSEPPKTETTNNKSAGTWG 673
N +S + T N +G WG
Sbjct: 1617 NDFSAGVRKPQTENAGSG-WG 1636
Score = 29.6 bits (65), Expect(2) = 1e-06
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 21 QNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGWNT 173
+ D +WG + + ++ W T K+ ++D P +WG + + W T
Sbjct: 1454 KEDAPSAWGTKTVREDAPSPWGTAKRATEDAP-AAWGAKSATEDAPPPWGT 1503
>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
gi|550346662|gb|EEE84012.2| hypothetical protein
POPTR_0001s06460g [Populus trichocarpa]
Length = 888
Score = 84.0 bits (206), Expect = 9e-14
Identities = 47/99 (47%), Positives = 64/99 (64%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
QW Q+ + F N + SRGWGS+N G WK + RP+ P +D S SSGL+T T
Sbjct: 759 QWGQQ----SGEFKKNRTEGSRGWGSNN-GHWKKRNRPSKPH---EDSS---SSGLFTMT 807
Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
RQ LD FTS+EQ LS+V+ ++L+IR+IM Q+ DG+P
Sbjct: 808 RQWLDIFTSQEQDILSDVEPLMLSIRRIMHQTGYSDGDP 846
>ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, partial [Populus
trichocarpa] gi|550305984|gb|ERP46156.1| hypothetical
protein POPTR_1437s002101g, partial [Populus
trichocarpa]
Length = 142
Score = 84.0 bits (206), Expect = 9e-14
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
QW Q+ + F N + SRGWGS+N GDWK + RP+ P +D S SSGL+T T
Sbjct: 61 QWGQQ----SGEFKKNRTEGSRGWGSNN-GDWKKRNRPSKPH---EDSS---SSGLFTTT 109
Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQS 989
RQRLD FTS+EQ LS+V+ ++L+IR+IM Q+
Sbjct: 110 RQRLDIFTSQEQDILSDVEPLMLSIRRIMHQT 141
>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 83.2 bits (204), Expect = 2e-13
Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Frame = +3
Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
QW Q ++P + SRGWGS+NT +WKNK RPN PQG +D +++ G++TA
Sbjct: 813 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 863
Query: 891 TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQS 989
TRQR+D FTSEEQ L +V+ I+ +IR+IM Q+
Sbjct: 864 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQA 896
>ref|XP_001449252.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|73807137|emb|CAI44473.1| RNA-binding protein involved
in epigenetic programming of developmental genome
rearrangements [Paramecium tetraurelia]
gi|124416829|emb|CAK81855.1| unnamed protein product
[Paramecium tetraurelia]
Length = 1109
Score = 54.7 bits (130), Expect(2) = 9e-13
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Frame = +2
Query: 251 WNTKTQSSQNEPRDSWGE--QAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424
W T+ + + WG Q + A + GW + T + WG
Sbjct: 318 WGQATEQPVQQS-NGWGNSTQEQPAQQSGGWGSTTTEQPPQQSGGWGSTTTEQPQQQGGW 376
Query: 425 XXXXXSQAEPRDS-WGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEEN 601
+Q +P+ WG E+ T+GGW + QP S WGG ++ N + G +
Sbjct: 377 GSTTATQDQPQSGGWGSTTEQATTSGGWGSSDQPAQS-SGGWGGSSDQQNGNSWGGGSGD 435
Query: 602 GQ 607
GQ
Sbjct: 436 GQ 437
Score = 46.2 bits (108), Expect(2) = 9e-13
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 24 NDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGW-NTRMQPSQ 191
N ++ WG K NS GGW + Q + WG E+ +GGW N+ QP+Q
Sbjct: 224 NGDSNQWGNSENKDNSGGGWGSTSTNEQPAQSGGWGSTTEQPAQSGGWGNSTQQPAQ 280
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 80.1 bits (196), Expect = 1e-12
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 17/115 (14%)
Frame = +3
Query: 717 WSQRKEPPAKPFAWNTNKSS----------------RGWGSSNTGDWKN-KGRPNNPQGT 845
W Q+K P W +NK S +GWG N G+WKN K RP G
Sbjct: 1786 WEQQKSPEVS-HGWGSNKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGM 1843
Query: 846 PDDQSGWNSSGLYTATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
+D + N LYTA+ QRLD FTSEEQ L++++ I+ +IRK+M QS DG+P
Sbjct: 1844 SNDDA--NLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1896
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 79.7 bits (195), Expect = 2e-12
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Frame = +3
Query: 717 WSQRKEPPAKPFA--WNT-NKSSRGWGSSNTGDWKN-KGRPNNPQGTPDDQSGWNSSGLY 884
W KE + + W+ N+ S+GWG N G+WKN K RP G +D + N LY
Sbjct: 1738 WGSHKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGMSNDDA--NLRALY 1794
Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TA+ QRLD FTSEEQ L++++ I+ +IRK+M QS DG+P
Sbjct: 1795 TASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1836
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 67.4 bits (163), Expect(2) = 2e-12
Identities = 39/102 (38%), Positives = 58/102 (56%)
Frame = +3
Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
++ QW PAK F ++ S GW + +W+ G+ N+ P + N + ++
Sbjct: 1666 EKSQWGN----PAKKFP--SDGSYGGWSNGGGAEWR--GKRNHTPRPPRSED--NLAPMF 1715
Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TAT+QRLD FTSEEQ LS+V+ ++ +RKIM S DGEP
Sbjct: 1716 TATKQRLDSFTSEEQELLSDVEPVMRTLRKIMHMSGYPDGEP 1757
Score = 32.3 bits (72), Expect(2) = 2e-12
Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 3/142 (2%)
Frame = +2
Query: 254 NTKTQSSQNEPRDSWGEQAEKANTTAGWNT---KTQPSQAEPDDSWGGLVEXXXXXXXXX 424
N K+++ SWG + + A W + + +EP +WG
Sbjct: 1533 NMKSETETESNGASWGSSGKTKSGAAAWGSCDKNNMETNSEP-SAWGS----------QG 1581
Query: 425 XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604
+++ P SW G W+ + + W G+ +K N+ ++G G
Sbjct: 1582 KKKAETESGPA-SW----------GAWDKKISETESGLAGW-GNGDKINSETESGAAAWG 1629
Query: 605 QWNQWSEPPKTETTNNKSAGTW 670
W Q S + TN W
Sbjct: 1630 SWGQPSPTAADKDTNEDDGNPW 1651
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 74.3 bits (181), Expect = 7e-11
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Frame = +3
Query: 756 WNTNK--SSRGWGSSNTGDWKNKGRPNN---------PQGTPDDQSGWNSSGLYTATRQR 902
WN + RGWGSSNTG+WK++ N P+G DD + TATR+R
Sbjct: 1691 WNKKQPEGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGPNDD----SPRVALTATRKR 1746
Query: 903 LDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
+D F +EE+ LSEV++++ +IR+IM QS DGEP
Sbjct: 1747 MDEFPTEEKDVLSEVESLMQSIRRIMHQSGCVDGEP 1782
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 72.4 bits (176), Expect = 3e-10
Identities = 43/102 (42%), Positives = 57/102 (55%)
Frame = +3
Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
+R QW PAK F SS GW + DWK G+ N+ P + N + ++
Sbjct: 1676 ERIQWGN----PAKKFP-----SSGGWSNGGGADWK--GKRNHTPRPPRSED--NLAPMF 1722
Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P
Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 71.6 bits (174), Expect = 5e-10
Identities = 43/102 (42%), Positives = 56/102 (54%)
Frame = +3
Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
+R QW PAK F SS GW + DWK G N+ P + N + ++
Sbjct: 1676 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 1722
Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P
Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 71.6 bits (174), Expect = 5e-10
Identities = 43/102 (42%), Positives = 56/102 (54%)
Frame = +3
Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
+R QW PAK F SS GW + DWK G N+ P + N + ++
Sbjct: 1676 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 1722
Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P
Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 71.6 bits (174), Expect = 5e-10
Identities = 43/102 (42%), Positives = 56/102 (54%)
Frame = +3
Query: 705 QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
+R QW PAK F SS GW + DWK G N+ P + N + ++
Sbjct: 539 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 585
Query: 885 TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
TATRQRLD FTSEEQ LS+V+ ++ +RKIM S DG+P
Sbjct: 586 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 627