BLASTX nr result

ID: Papaver27_contig00029366 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00029366
         (1010 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...    80   5e-23
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...    86   1e-19
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...    76   8e-16
ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prun...    70   8e-16
emb|CBI40152.3| unnamed protein product [Vitis vinifera]               89   2e-15
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    89   2e-15
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...    75   3e-15
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...    71   7e-14
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu...    84   9e-14
ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, par...    84   9e-14
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]    83   2e-13
ref|XP_001449252.1| hypothetical protein [Paramecium tetraurelia...    55   9e-13
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    80   1e-12
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    80   2e-12
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...    67   2e-12
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...    74   7e-11
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...    72   3e-10
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...    72   5e-10
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...    72   5e-10
gb|AAB95289.1| unknown protein [Arabidopsis thaliana]                  72   5e-10

>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score = 80.5 bits (197), Expect(3) = 5e-23
 Identities = 44/99 (44%), Positives = 57/99 (57%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
            QW Q +    K    N  + +R W SS  G+WKNK RP    G  +D S      LYT T
Sbjct: 1647 QWGQHRGDQTKK---NRFEGARNWVSS-PGEWKNKNRPPKSPGMVNDNS--TMGALYTVT 1700

Query: 894  RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            RQRLD FTSEEQ  LS ++ ++ ++R+IM QS   DG+P
Sbjct: 1701 RQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDP 1739



 Score = 42.0 bits (97), Expect(3) = 5e-23
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 21/175 (12%)
 Frame = +2

Query: 263  TQSSQNEPRDSWGEQAEKANTTAGWNTKTQPS------QAEPDDSWGGLVEXXXXXXXXX 424
            T +++ +   +WG    K N+T+ W T           +   DDS    V+         
Sbjct: 1444 TNTAREDAASAWGTNPAKENSTSTWGTTRANENDWCGREVGQDDSASLSVKKSSVLDTSS 1503

Query: 425  XXXXXSQAEPRDS-WGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEEN 601
                 +  E   S WG    K NTT  W      ++D      GH + A+ + +     N
Sbjct: 1504 AWATNTAREDAASAWGKHPAKENTTSTWGTTTASENDWCGRGVGHDDSASLSGKKSSVLN 1563

Query: 602  --GQW----------NQWSEPPKTETTNNKSAGTWGTSMAGEH--VNQSAXXMEP 724
                W          + W + P  E T +    TWGT+ A E+    + A  +EP
Sbjct: 1564 TSSVWATNTAREDATSAWGKNPAKENTTS----TWGTTTASENDWCGREAGKVEP 1614



 Score = 33.1 bits (74), Expect(3) = 5e-23
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 39   SWG---GQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGWNT 173
            SWG   G+ + +NS       K+ S  D + +WG    K NTT  W T
Sbjct: 1360 SWGTEKGKTQDSNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGT 1407


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 85.9 bits (211), Expect(3) = 1e-19
 Identities = 46/100 (46%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
            QW Q+    ++ F  +  + SRGWGS+N GDWKNK  RP+ P          N+SG++T 
Sbjct: 1727 QWGQQ----SREFKKDRFEGSRGWGSNN-GDWKNKRNRPSKPH------EDLNASGIFTT 1775

Query: 891  TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TRQRLD FTS+EQ  LS+++ ++L+IR+IM Q+   DG+P
Sbjct: 1776 TRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDP 1815



 Score = 31.2 bits (69), Expect(3) = 1e-19
 Identities = 25/141 (17%), Positives = 39/141 (27%)
 Frame = +2

Query: 251  WNTKTQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXX 430
            W   +     + +      A +   + GW  K   +QA+    WG               
Sbjct: 1572 WGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWG--------------- 1616

Query: 431  XXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENGQW 610
                 +E    WG   E       W         P+ + G   E  N        E G+ 
Sbjct: 1617 -KPKSSENSQGWGLSKESGKEVHEWGV-------PNSAGGNGSETNNNNENQSLVEQGKE 1668

Query: 611  NQWSEPPKTETTNNKSAGTWG 673
            + W    K  +    +A  WG
Sbjct: 1669 SGWDN--KASSNQEGTASGWG 1687



 Score = 26.6 bits (57), Expect(3) = 1e-19
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 27   DPNDSWGGQ--AEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGW 167
            D +  WG +  + +A++  GW   K P   + +  WG   E   +  GW
Sbjct: 1527 DGDKLWGKEVSSNQADTASGWGKPKSP---EISLGWGSTKESVKSDRGW 1572


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score = 76.3 bits (186), Expect(3) = 8e-16
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
 Frame = +3

Query: 717  WSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTAT 893
            W Q ++ P K         +RGW SS+ G+WK K  RP    G  +D S  N+  +YT T
Sbjct: 1672 WGQSRKEPFK--------KNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA--MYTVT 1720

Query: 894  RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007
            RQRLD FTSEEQ  LS+V+ I+ +IR+IM QS   DG+
Sbjct: 1721 RQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGD 1758



 Score = 30.8 bits (68), Expect(3) = 8e-16
 Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 12/153 (7%)
 Frame = +2

Query: 251  WNTKTQSSQNEPRDSWGEQAEKANTTAGW--NTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424
            W T+ Q S       W E  + AN TA W  N   + S  +   SW              
Sbjct: 1511 WGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGWDTKASWN------------- 1555

Query: 425  XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604
                    +  D  G  VE  N++  W A+   +D  +  W     K +   ++   + G
Sbjct: 1556 ----TKALDKLDDVGSAVE--NSSSVWGAR---EDFSTKGWEDS-SKPSANEKSIVHQIG 1605

Query: 605  QWN----------QWSEPPKTETTNNKSAGTWG 673
             WN           W +   TE        +WG
Sbjct: 1606 GWNVPDAKGTDDSSWGKQKLTENAKGTDDSSWG 1638



 Score = 23.9 bits (50), Expect(3) = 8e-16
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
 Frame = +3

Query: 18   SQNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQ----------VEKA-----N 152
            S + P   WG +A    S+     + + +   P+ +WG +          +EK      N
Sbjct: 1447 SASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1506

Query: 153  TTGGWNTRMQPS 188
               GW T  Q S
Sbjct: 1507 PLSGWGTEAQDS 1518


>ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica]
            gi|462416248|gb|EMJ20985.1| hypothetical protein
            PRUPE_ppa024567mg [Prunus persica]
          Length = 792

 Score = 70.1 bits (170), Expect(2) = 8e-16
 Identities = 41/99 (41%), Positives = 55/99 (55%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
            QW Q +    K   +   + +R W SS  G+WKNK RP    G  +D S      LYT T
Sbjct: 615  QWGQHRGDQTKKSRF---EGARNWVSS-PGEWKNKNRPPKSPGMVNDNS--TMGALYTVT 668

Query: 894  RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            R RLD FTSEE   LS ++ ++ ++R+IM QS   DG+P
Sbjct: 669  RPRLDMFTSEEH-VLSNIEPVMRSLRRIMHQSGYNDGDP 706



 Score = 41.2 bits (95), Expect(2) = 8e-16
 Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 22/176 (12%)
 Frame = +2

Query: 263 TQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXXXXXS 442
           T +++ +   +WG    K NTT+ W T T  S+ +    W G  +              S
Sbjct: 412 TNTAREDAASAWGTNPAKENTTSTWGT-TTASENDWCGRWVGQDDSASLSVKKSSVLDTS 470

Query: 443 QA--------EPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEE 598
            A        +   + G    K N T  W      ++D      GH + A+ + +     
Sbjct: 471 SAWATNTAREDAASACGKQPAKENATSTWGTTLASENDWCGRGVGHDDSASLSGKKSSVL 530

Query: 599 N--GQW----------NQWSEPPKTETTNNKSAGTWGTSMAGEH--VNQSAXXMEP 724
           N    W          + W E P  E T +    TWGT+ A E+    + A  +EP
Sbjct: 531 NTSSVWATNTAREDATSAWGENPAKENTTS----TWGTTTASENDWCGREAGKVEP 582


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
            QW Q     ++P      + SRGWGS+NT +WKNK  RPN PQG  +D   +++ G++TA
Sbjct: 1681 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 1731

Query: 891  TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TRQR+D FTSEEQ  L +V+ I+ +IR+IM Q+   DG+P
Sbjct: 1732 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1771


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
            QW Q     ++P      + SRGWGS+NT +WKNK  RPN PQG  +D   +++ G++TA
Sbjct: 1621 QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 1671

Query: 891  TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TRQR+D FTSEEQ  L +V+ I+ +IR+IM Q+   DG+P
Sbjct: 1672 TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1711


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score = 75.5 bits (184), Expect(3) = 3e-15
 Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = +3

Query: 717  WSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTAT 893
            W Q ++ P K         +RGW SS+ G+WK K  RP    G  +D S  N+  +YT T
Sbjct: 1670 WGQSRKEPFK--------KNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA--MYTVT 1718

Query: 894  RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007
            RQRLD FTSEEQ  LS V+ I+ +IR+IM QS   DG+
Sbjct: 1719 RQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGD 1756



 Score = 29.6 bits (65), Expect(3) = 3e-15
 Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 12/153 (7%)
 Frame = +2

Query: 251  WNTKTQSSQNEPRDSWGEQAEKANTTAGW--NTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424
            W T+ Q S       W E  + AN TA W  N   + S  +   SW              
Sbjct: 1509 WGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGWDTKASW-------------- 1552

Query: 425  XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604
                    +  D  G  VE  N++  W A+   +D  +  W     K +   ++   + G
Sbjct: 1553 ---KTKALDKLDDVGSAVE--NSSSVWGAR---EDFSTKGWEDS-SKPSANEKSIVHQIG 1603

Query: 605  QWNQ----------WSEPPKTETTNNKSAGTWG 673
             WN           W +   TE        +WG
Sbjct: 1604 GWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWG 1636



 Score = 23.9 bits (50), Expect(3) = 3e-15
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
 Frame = +3

Query: 18   SQNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQ----------VEKA-----N 152
            S + P   WG +A    S+     + + +   P+ +WG +          +EK      N
Sbjct: 1445 SASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1504

Query: 153  TTGGWNTRMQPS 188
               GW T  Q S
Sbjct: 1505 PLSGWGTEAQDS 1516


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score = 71.2 bits (173), Expect(2) = 7e-14
 Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFA-WNTNKSS---------RGWGSSNTGDWKNKG-RPNNPQGTPDDQS 860
            QW  + E   +    W  N  S         R WG  N G+WK K  RP    G  +D S
Sbjct: 1779 QWDSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGP-NAGEWKGKNSRPAKSPGMVNDDS 1837

Query: 861  GWNSSGLYTATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGE 1007
              + + +YTATRQRLD FTSEEQ  LS ++  +L+IR+IM QS   DG+
Sbjct: 1838 --SVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGD 1884



 Score = 33.5 bits (75), Expect(2) = 7e-14
 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 23/136 (16%)
 Frame = +2

Query: 287  RDSWGEQAEKANTTAGWN----------TKTQPSQAE-----------PDDSWG--GLVE 397
            R SW +++  A++   W           T  QP  AE           PD S G  GL +
Sbjct: 1655 RHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEK 1714

Query: 398  XXXXXXXXXXXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTT 577
                          S   P+ +WG       + G W  QK P+     SWG   +K + T
Sbjct: 1715 PASTNSQGSWGQQKSPEIPQGNWGQQTSPDISQGTWGQQKSPEMS-QGSWG--QQKPSDT 1771

Query: 578  AQNGKEENGQWNQWSE 625
            +Q       QW+  SE
Sbjct: 1772 SQPATV--NQWDSQSE 1785



 Score = 50.4 bits (119), Expect(2) = 1e-06
 Identities = 33/141 (23%), Positives = 54/141 (38%)
 Frame = +2

Query: 251  WNTKTQSSQNEPRDSWGEQAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXXXX 430
            W T   ++++ P  +WG +A K + ++ W TKT    A    +WG   E           
Sbjct: 1501 WGTAKTAAEDAP-SAWGVKAVKKDASSPWETKTATEDA--TTAWGRNNEKKHVLTAEVLE 1557

Query: 431  XXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENGQW 610
               ++ +    W G     N    W    + ++  S   G  VE  +  +Q   E    W
Sbjct: 1558 DSKAREDATSGW-GTENAENAQSTWRTSTESENGWSGRGGSKVESTDVQSQKAVENPKGW 1616

Query: 611  NQWSEPPKTETTNNKSAGTWG 673
            N +S   +   T N  +G WG
Sbjct: 1617 NDFSAGVRKPQTENAGSG-WG 1636



 Score = 29.6 bits (65), Expect(2) = 1e-06
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 21   QNDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGWNT 173
            + D   +WG +  + ++   W T K+ ++D P  +WG +    +    W T
Sbjct: 1454 KEDAPSAWGTKTVREDAPSPWGTAKRATEDAP-AAWGAKSATEDAPPPWGT 1503


>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
            gi|550346662|gb|EEE84012.2| hypothetical protein
            POPTR_0001s06460g [Populus trichocarpa]
          Length = 888

 Score = 84.0 bits (206), Expect = 9e-14
 Identities = 47/99 (47%), Positives = 64/99 (64%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
            QW Q+    +  F  N  + SRGWGS+N G WK + RP+ P    +D S   SSGL+T T
Sbjct: 759  QWGQQ----SGEFKKNRTEGSRGWGSNN-GHWKKRNRPSKPH---EDSS---SSGLFTMT 807

Query: 894  RQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            RQ LD FTS+EQ  LS+V+ ++L+IR+IM Q+   DG+P
Sbjct: 808  RQWLDIFTSQEQDILSDVEPLMLSIRRIMHQTGYSDGDP 846


>ref|XP_006387242.1| hypothetical protein POPTR_1437s002101g, partial [Populus
           trichocarpa] gi|550305984|gb|ERP46156.1| hypothetical
           protein POPTR_1437s002101g, partial [Populus
           trichocarpa]
          Length = 142

 Score = 84.0 bits (206), Expect = 9e-14
 Identities = 46/92 (50%), Positives = 62/92 (67%)
 Frame = +3

Query: 714 QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLYTAT 893
           QW Q+    +  F  N  + SRGWGS+N GDWK + RP+ P    +D S   SSGL+T T
Sbjct: 61  QWGQQ----SGEFKKNRTEGSRGWGSNN-GDWKKRNRPSKPH---EDSS---SSGLFTTT 109

Query: 894 RQRLDRFTSEEQSALSEVDTIILAIRKIMQQS 989
           RQRLD FTS+EQ  LS+V+ ++L+IR+IM Q+
Sbjct: 110 RQRLDIFTSQEQDILSDVEPLMLSIRRIMHQT 141


>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
          Length = 1081

 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
 Frame = +3

Query: 714  QWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNK-GRPNNPQGTPDDQSGWNSSGLYTA 890
            QW Q     ++P      + SRGWGS+NT +WKNK  RPN PQG  +D   +++ G++TA
Sbjct: 813  QWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAGGIFTA 863

Query: 891  TRQRLDRFTSEEQSALSEVDTIILAIRKIMQQS 989
            TRQR+D FTSEEQ  L +V+ I+ +IR+IM Q+
Sbjct: 864  TRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQA 896


>ref|XP_001449252.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
           gi|73807137|emb|CAI44473.1| RNA-binding protein involved
           in epigenetic programming of developmental genome
           rearrangements [Paramecium tetraurelia]
           gi|124416829|emb|CAK81855.1| unnamed protein product
           [Paramecium tetraurelia]
          Length = 1109

 Score = 54.7 bits (130), Expect(2) = 9e-13
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
 Frame = +2

Query: 251 WNTKTQSSQNEPRDSWGE--QAEKANTTAGWNTKTQPSQAEPDDSWGGLVEXXXXXXXXX 424
           W   T+    +  + WG   Q + A  + GW + T     +    WG             
Sbjct: 318 WGQATEQPVQQS-NGWGNSTQEQPAQQSGGWGSTTTEQPPQQSGGWGSTTTEQPQQQGGW 376

Query: 425 XXXXXSQAEPRDS-WGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEEN 601
                +Q +P+   WG   E+  T+GGW +  QP    S  WGG  ++ N  +  G   +
Sbjct: 377 GSTTATQDQPQSGGWGSTTEQATTSGGWGSSDQPAQS-SGGWGGSSDQQNGNSWGGGSGD 435

Query: 602 GQ 607
           GQ
Sbjct: 436 GQ 437



 Score = 46.2 bits (108), Expect(2) = 9e-13
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 24  NDPNDSWGGQAEKANSTGGWNTKKQPSQDDPNDSWGGQVEKANTTGGW-NTRMQPSQ 191
           N  ++ WG    K NS GGW +     Q   +  WG   E+   +GGW N+  QP+Q
Sbjct: 224 NGDSNQWGNSENKDNSGGGWGSTSTNEQPAQSGGWGSTTEQPAQSGGWGNSTQQPAQ 280


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 80.1 bits (196), Expect = 1e-12
 Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 17/115 (14%)
 Frame = +3

Query: 717  WSQRKEPPAKPFAWNTNKSS----------------RGWGSSNTGDWKN-KGRPNNPQGT 845
            W Q+K P      W +NK S                +GWG  N G+WKN K RP    G 
Sbjct: 1786 WEQQKSPEVS-HGWGSNKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGM 1843

Query: 846  PDDQSGWNSSGLYTATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
             +D +  N   LYTA+ QRLD FTSEEQ  L++++ I+ +IRK+M QS   DG+P
Sbjct: 1844 SNDDA--NLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1896


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 79.7 bits (195), Expect = 2e-12
 Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
 Frame = +3

Query: 717  WSQRKEPPAKPFA--WNT-NKSSRGWGSSNTGDWKN-KGRPNNPQGTPDDQSGWNSSGLY 884
            W   KE   +  +  W+  N+ S+GWG  N G+WKN K RP    G  +D +  N   LY
Sbjct: 1738 WGSHKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGMSNDDA--NLRALY 1794

Query: 885  TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TA+ QRLD FTSEEQ  L++++ I+ +IRK+M QS   DG+P
Sbjct: 1795 TASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDP 1836


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score = 67.4 bits (163), Expect(2) = 2e-12
 Identities = 39/102 (38%), Positives = 58/102 (56%)
 Frame = +3

Query: 705  QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
            ++ QW      PAK F   ++ S  GW +    +W+  G+ N+    P  +   N + ++
Sbjct: 1666 EKSQWGN----PAKKFP--SDGSYGGWSNGGGAEWR--GKRNHTPRPPRSED--NLAPMF 1715

Query: 885  TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TAT+QRLD FTSEEQ  LS+V+ ++  +RKIM  S   DGEP
Sbjct: 1716 TATKQRLDSFTSEEQELLSDVEPVMRTLRKIMHMSGYPDGEP 1757



 Score = 32.3 bits (72), Expect(2) = 2e-12
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 3/142 (2%)
 Frame = +2

Query: 254  NTKTQSSQNEPRDSWGEQAEKANTTAGWNT---KTQPSQAEPDDSWGGLVEXXXXXXXXX 424
            N K+++       SWG   +  +  A W +       + +EP  +WG             
Sbjct: 1533 NMKSETETESNGASWGSSGKTKSGAAAWGSCDKNNMETNSEP-SAWGS----------QG 1581

Query: 425  XXXXXSQAEPRDSWGGVVEKTNTTGGWNAQKQPQDDPSDSWGGHVEKANTTAQNGKEENG 604
                 +++ P  SW          G W+ +    +     W G+ +K N+  ++G    G
Sbjct: 1582 KKKAETESGPA-SW----------GAWDKKISETESGLAGW-GNGDKINSETESGAAAWG 1629

Query: 605  QWNQWSEPPKTETTNNKSAGTW 670
             W Q S     + TN      W
Sbjct: 1630 SWGQPSPTAADKDTNEDDGNPW 1651


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score = 74.3 bits (181), Expect = 7e-11
 Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
 Frame = +3

Query: 756  WNTNK--SSRGWGSSNTGDWKNKGRPNN---------PQGTPDDQSGWNSSGLYTATRQR 902
            WN  +    RGWGSSNTG+WK++   N          P+G  DD    +     TATR+R
Sbjct: 1691 WNKKQPEGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGPNDD----SPRVALTATRKR 1746

Query: 903  LDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            +D F +EE+  LSEV++++ +IR+IM QS   DGEP
Sbjct: 1747 MDEFPTEEKDVLSEVESLMQSIRRIMHQSGCVDGEP 1782


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score = 72.4 bits (176), Expect = 3e-10
 Identities = 43/102 (42%), Positives = 57/102 (55%)
 Frame = +3

Query: 705  QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
            +R QW      PAK F      SS GW +    DWK  G+ N+    P  +   N + ++
Sbjct: 1676 ERIQWGN----PAKKFP-----SSGGWSNGGGADWK--GKRNHTPRPPRSED--NLAPMF 1722

Query: 885  TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TATRQRLD FTSEEQ  LS+V+ ++  +RKIM  S   DG+P
Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score = 71.6 bits (174), Expect = 5e-10
 Identities = 43/102 (42%), Positives = 56/102 (54%)
 Frame = +3

Query: 705  QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
            +R QW      PAK F      SS GW +    DWK  G  N+    P  +   N + ++
Sbjct: 1676 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 1722

Query: 885  TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TATRQRLD FTSEEQ  LS+V+ ++  +RKIM  S   DG+P
Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase V subunit 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
            DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
            DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
            Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
            AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
            gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
            alpha subunit [Arabidopsis thaliana]
            gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
            large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score = 71.6 bits (174), Expect = 5e-10
 Identities = 43/102 (42%), Positives = 56/102 (54%)
 Frame = +3

Query: 705  QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
            +R QW      PAK F      SS GW +    DWK  G  N+    P  +   N + ++
Sbjct: 1676 ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 1722

Query: 885  TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TATRQRLD FTSEEQ  LS+V+ ++  +RKIM  S   DG+P
Sbjct: 1723 TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 1764


>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
          Length = 839

 Score = 71.6 bits (174), Expect = 5e-10
 Identities = 43/102 (42%), Positives = 56/102 (54%)
 Frame = +3

Query: 705  QRXQWSQRKEPPAKPFAWNTNKSSRGWGSSNTGDWKNKGRPNNPQGTPDDQSGWNSSGLY 884
            +R QW      PAK F      SS GW +    DWK  G  N+    P  +   N + ++
Sbjct: 539  ERSQWGN----PAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPPRSED--NLAPMF 585

Query: 885  TATRQRLDRFTSEEQSALSEVDTIILAIRKIMQQSRDKDGEP 1010
            TATRQRLD FTSEEQ  LS+V+ ++  +RKIM  S   DG+P
Sbjct: 586  TATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDP 627


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