BLASTX nr result
ID: Papaver27_contig00027939
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00027939
(2693 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007203452.1| hypothetical protein PRUPE_ppa022115mg [Prun... 162 1e-65
ref|XP_007217321.1| hypothetical protein PRUPE_ppa019733mg [Prun... 161 2e-65
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 153 1e-62
ref|XP_007203344.1| hypothetical protein PRUPE_ppa020282mg [Prun... 140 3e-61
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 139 1e-59
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 135 3e-58
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 151 6e-58
ref|XP_007224193.1| hypothetical protein PRUPE_ppa017155mg, part... 137 1e-57
gb|AAQ19327.1| bZIP-like protein [Oryza sativa Japonica Group] 144 3e-57
gb|EEC68887.1| hypothetical protein OsI_37529 [Oryza sativa Indi... 144 3e-57
ref|NP_001066197.2| Os12g0156200 [Oryza sativa Japonica Group] g... 144 3e-57
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 130 1e-56
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 134 1e-55
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 128 7e-55
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 103 1e-54
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 137 3e-54
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 137 3e-54
gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japo... 129 4e-54
ref|XP_004253275.1| PREDICTED: uncharacterized protein LOC101268... 157 1e-53
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 127 2e-53
>ref|XP_007203452.1| hypothetical protein PRUPE_ppa022115mg [Prunus persica]
gi|462398983|gb|EMJ04651.1| hypothetical protein
PRUPE_ppa022115mg [Prunus persica]
Length = 1755
Score = 162 bits (410), Expect(2) = 1e-65
Identities = 104/315 (33%), Positives = 164/315 (52%), Gaps = 8/315 (2%)
Frame = +2
Query: 8 EKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNW 187
EK ++ Q + +D G RD+ F G FTW R V+ R+DRALA +W
Sbjct: 558 EKEGGPLRNNRQMQGFRNIVDKLGFRDLGFNGYKFTWKC-RFGDGFVRVRLDRALATTSW 616
Query: 188 FTSFKDSVINNLLPHGSDHAPIPLHIHLP--DKTNNKPYRFYKVWLSNPLCKEVLRKSCH 361
F + +L P SDH PI + I K+ + + F +W ++ C++ +++
Sbjct: 617 QNLFPGFSVQHLDPSRSDHLPILVRIRHATCQKSRYRRFHFEAMWTTHVDCEKTIKQVWE 676
Query: 362 LEESLH-LNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSP-----RQDT 523
+L + L KKI+Q T L+ W+ +FGH+K E R + L +P +D
Sbjct: 677 SVGNLDPMVGLDKKIKQMTWVLQRWSKSTFGHIKEETRVLRAKLASLFQAPYSERVEEDR 736
Query: 524 TLIKSLEDQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSN 703
+++ D+L K+ +SRE L D+N YFH KA RRRRN I L+DSN
Sbjct: 737 RVVQKSLDEL---LAKNELYWCQRSRENWLKAGDKNTSYFHQKATNRRRRNIIKGLEDSN 793
Query: 704 GNWISNKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKE 883
G W ++++ I +++ +F D++ SS +M ++L+ ++P VT Q+LI S EIK+
Sbjct: 794 GCWRTSRQGITSIVIDYFGDLFRSSGSSMMEEILSALEPKVTADMQQVLIADFSYQEIKD 853
Query: 884 AMFQINPWGVPGPDG 928
A+FQ+ P PGPDG
Sbjct: 854 AVFQMQPSKAPGPDG 868
Score = 117 bits (293), Expect(2) = 1e-65
Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ++W IV ++V+ V+ F + + Q+NHTF LIPK+ RPISLCN+ Y
Sbjct: 873 FYQKYWRIVGDDVVAAVRAFLQSNEMLRQLNHTFVTLIPKVKEPRTMAQLRPISLCNVLY 932
Query: 1120 KLITKIL------------------------------VVQEMVHYMK-KTLFYTGVVGIK 1206
++ K L V E+ H++K + G + +K
Sbjct: 933 RIGAKTLANRMKFVMQSVISESQSAFVPGRLITDNSIVAFEIAHFLKQRRRGRKGSLALK 992
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LDM K +DR+EW FL +++L +GF W +++ CV+T S L+NG P + PTRGLR
Sbjct: 993 LDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMDCVTTVSYSFLVNGEPTRILYPTRGLR 1052
Query: 1387 QDD 1395
Q D
Sbjct: 1053 QGD 1055
Score = 87.0 bits (214), Expect(2) = 4e-31
Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 1/209 (0%)
Frame = +2
Query: 1460 FSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGK 1639
FS +++ D+ + L + +D + YL ++ R++ C ++ +L GW+ +
Sbjct: 1141 FSANIHMDTQSRLASVLGVPRVDSHATYLGLPMMLGRNKTVCFRYLKERVWKKLQGWREQ 1200
Query: 1640 LINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK-*NKGFNPKSWS 1816
++ AG+ V ++ + Y M F+LP +I Q+ R++W + N+ + W
Sbjct: 1201 TLSIAGKEVLLKVVAQSIPLYVMSCFLLPQGLCHEIEQMMARFWWGQQGENRKIHWMRWE 1260
Query: 1817 SVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISR 1996
+C +K GG+ F+ + FN+AML K WRL+ P ++L A + + E
Sbjct: 1261 RLCKAKTEGGMGFRCLQAFNMAMLAKQGWRLVHNPHSLASRLLKAKYFPQTN-FWEATLG 1319
Query: 1997 KNSSWVWQSIQHGL*VLKQY*IWEIGDGK 2083
S VW+SI VL+ ++IGDGK
Sbjct: 1320 SRPSCVWKSIWTARKVLEMGSRFQIGDGK 1348
Score = 77.8 bits (190), Expect(2) = 4e-31
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Frame = +3
Query: 2166 DTRVADLTDTE-KKTWNIQLLSQYFNPDQIKEIMTIKIPSKGE-DTLRWSLPYCGAFTTK 2339
+T+V++L E W++Q L+ F P + +I+ I + + D + W+ G FT K
Sbjct: 1376 NTKVSELICNEGSPQWDLQKLNNLFLPVDVVDIVRIPLSIRAPPDRIVWNYDKHGLFTVK 1435
Query: 2340 YVYNELSKNNAG----ISHLHQMEGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFS 2507
Y + +G S + G W +WN VP K+++F + HDILP K L
Sbjct: 1436 SAYRVALRVTSGDEDESSSSNSDTGMLWRHIWNATVPTKLKIFAWRVAHDILPTKANLIK 1495
Query: 2508 KNNNMDQLCPLCLNSEETSTHLFLHCQFAEVIW 2606
K +M +C C + E++ H+ C FA W
Sbjct: 1496 KGVDMQDMCMFCGDITESALHVLAMCPFAVATW 1528
>ref|XP_007217321.1| hypothetical protein PRUPE_ppa019733mg [Prunus persica]
gi|462413471|gb|EMJ18520.1| hypothetical protein
PRUPE_ppa019733mg [Prunus persica]
Length = 1275
Score = 161 bits (408), Expect(2) = 2e-65
Identities = 104/315 (33%), Positives = 164/315 (52%), Gaps = 8/315 (2%)
Frame = +2
Query: 8 EKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNW 187
EK ++ Q + +D G RD+ F G FTW R V+ R+DRALA +W
Sbjct: 104 EKEGGPLRNNRQMQGFRNIVDKLGFRDLGFNGYKFTWKC-RFGDGFVRVRLDRALATTSW 162
Query: 188 FTSFKDSVINNLLPHGSDHAPIPLHIHLPDKTNNKPYRFY--KVWLSNPLCKEVLRKSCH 361
F + +L P SDH PI + I ++ +RF+ +W ++ C++ +++
Sbjct: 163 QNLFPGFSVQHLDPSRSDHLPILVRIRHATCQKSRYHRFHFEAMWTTHVDCEKTIKQVWE 222
Query: 362 LEESLH-LNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSP-----RQDT 523
L + L KKI+Q T L+ W+ +FGH+K E R + L +P +D
Sbjct: 223 SVGDLDPMVGLDKKIKQMTWVLQRWSKSTFGHIKEETRVLRAKLASLFQAPYSERVEEDR 282
Query: 524 TLIKSLEDQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSN 703
+++ D+L K+ +SRE L D+N YFH KA RRRRN I L+DSN
Sbjct: 283 RVVQKSLDEL---LAKNELYWCQRSRENWLKAGDKNTSYFHQKATNRRRRNIIKGLEDSN 339
Query: 704 GNWISNKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKE 883
G W ++++ I +++ +F D++ SS +M ++L+ ++P VT Q+LI S EIK+
Sbjct: 340 GCWRTSRQGITSIVIDYFGDLFRSSGSSMMEEILSALEPKVTADMQQVLIADFSYQEIKD 399
Query: 884 AMFQINPWGVPGPDG 928
A+FQ+ P PGPDG
Sbjct: 400 AVFQMQPSKAPGPDG 414
Score = 117 bits (293), Expect(2) = 2e-65
Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ++W IV ++V+ V+ F + + Q+NHTF LIPK+ RPISLCN+ Y
Sbjct: 419 FYQKYWRIVGDDVVAAVRAFLQSNEMLRQLNHTFVTLIPKVKEPRTMAQLRPISLCNVLY 478
Query: 1120 KLITKIL------------------------------VVQEMVHYMK-KTLFYTGVVGIK 1206
++ K L V E+ H++K + G + +K
Sbjct: 479 RIGAKTLANRMKFVMQSVISESQSAFVPGRLIIDNSIVAFEIAHFLKQRRRGRKGSLALK 538
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LDM K +DR+EW FL +++L +GF W +++ CV+T S L+NG P + PTRGLR
Sbjct: 539 LDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMDCVTTVSYSFLVNGEPTRILYPTRGLR 598
Query: 1387 QDD 1395
Q D
Sbjct: 599 QGD 601
Score = 83.6 bits (205), Expect(2) = 4e-30
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Frame = +2
Query: 1469 HMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGKLIN 1648
+++ D+ + L + +D + YL ++ R++ C ++ +L GW+ + ++
Sbjct: 664 NIHMDTQSRLASVLGVPRVDSHATYLGLPMMLGRNKTVCFRYLKERVWKKLQGWREQTLS 723
Query: 1649 QAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK-*NKGFNPKSWSSVC 1825
AG+ V ++ + Y M F+LP +I Q+ R++W + N+ + W +C
Sbjct: 724 IAGKEVLLKVVAQSIPLYVMSCFLLPQGLCHEIEQMMARFWWGQQGENRKIHWMRWERLC 783
Query: 1826 TSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISRKNS 2005
+K GG+ F+ + FN+AML K WRL+ P ++L A + + E
Sbjct: 784 KAKTEGGMGFRCLQAFNMAMLAKQGWRLVHNPHSLASRLLKAKYFPQTN-FWEATLGSRP 842
Query: 2006 SWVWQSIQHGL*VLKQY*IWEIGDGK 2083
S VW+SI VL+ ++IGDGK
Sbjct: 843 SCVWKSIWTARKVLEMGSRFQIGDGK 868
Score = 77.8 bits (190), Expect(2) = 4e-30
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Frame = +3
Query: 2166 DTRVADLTDTE-KKTWNIQLLSQYFNPDQIKEIMTIKIPSKGE-DTLRWSLPYCGAFTTK 2339
+T+V++L E W++Q L+ F P + +I+ I + + D + W+ G FT K
Sbjct: 896 NTKVSELICNEGSPQWDLQKLNNLFLPVDVVDIVRIPLSIRAPPDRIVWNYDKHGLFTVK 955
Query: 2340 YVYNELSKNNAG----ISHLHQMEGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFS 2507
Y + +G S + G W +WN VP K+++F + HDILP K L
Sbjct: 956 SAYRVALRVTSGDEDESSSSNSDTGMLWRHIWNATVPTKLKIFAWRVAHDILPTKANLIK 1015
Query: 2508 KNNNMDQLCPLCLNSEETSTHLFLHCQFAEVIW 2606
K +M +C C + E++ H+ C FA W
Sbjct: 1016 KGVDMQDMCMFCGDITESALHVLAMCPFAVATW 1048
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 153 bits (386), Expect(2) = 1e-62
Identities = 93/297 (31%), Positives = 157/297 (52%), Gaps = 7/297 (2%)
Frame = +2
Query: 59 DTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDSVINNLLPHGS 238
DT+D LRD+ + G +TW R + ++ R+DR L +N+W + DSV + + + S
Sbjct: 162 DTLDTLALRDLGYVGTWYTWERGRSPSTCIRERLDRYLCSNSWLDLYPDSVPEHTIRYKS 221
Query: 239 DHAPIPLHIHLPDKTNNKPYR--FYKVWLSNPLCKEVLRKSCHLEESLHLNELPKKIQQT 412
DH+ I L + K R F WL + C+ V+R+S E + ++
Sbjct: 222 DHSAIVLRSQRAGRPRGKTRRLHFETSWLLDDECEAVVRESWENSEG---EVMTGRVASM 278
Query: 413 TEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKS--LEDQLNKWYDKSAQIT 586
+ L W+ K F ++ +I + L A+N+P ++ + LE +L++ + K
Sbjct: 279 GQCLVRWSTKKFKNLSKQIETAEKALSVAQNNPISESACQECVLLEKKLDELHAKHEAYW 338
Query: 587 YHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKEEI*KLLLKHFRDI 766
Y +SR + D+N KYFH+KA+ R++RN + L D G W + I + +F I
Sbjct: 339 YLRSRVAEVKDGDKNTKYFHHKASQRKKRNFVKGLFDGLGTWREEADHIENIFTSYFSSI 398
Query: 767 YTSSNP---TMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINPWGVPGPDG 928
+TSSNP +++A ++++I+P VTE+ N L++ S DEI A+ Q++P PGPDG
Sbjct: 399 FTSSNPSDLSLEA-VMSVIEPVVTEEHNLKLLEPFSKDEILAALQQMHPCKAPGPDG 454
Score = 117 bits (292), Expect(2) = 1e-62
Identities = 65/183 (35%), Positives = 95/183 (51%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ+FW IV ++ S + N PS +N+T LIPK+ TK + RPI+LCN+ Y
Sbjct: 459 FYQRFWHIVGDDVTSFISNILHGHSSPSCVNNTNIALIPKVKNPTKAAEFRPIALCNVLY 518
Query: 1120 KLITKILVVQ------------------------------EMVHYMK-KTLFYTGVVGIK 1206
KL++K +V++ E+ H MK + G + +K
Sbjct: 519 KLMSKAIVMRLKSFLPEIISENQSAFVPGRLITDNALIAMEVFHSMKNRNRSRKGTIAMK 578
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LDM K +DR+EW FL ++LL +GF +W LI VS+ S ++NG ++P RGLR
Sbjct: 579 LDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSVCGSVVPARGLR 638
Query: 1387 QDD 1395
Q D
Sbjct: 639 QGD 641
Score = 121 bits (303), Expect(2) = 2e-38
Identities = 71/208 (34%), Positives = 116/208 (55%), Gaps = 1/208 (0%)
Frame = +2
Query: 1460 FSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGK 1639
+S+ ++ +E+T L MR++D +EKYL I RS+ D I++I +L GW+ K
Sbjct: 727 YSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEK 786
Query: 1640 LINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFW-NHK*NKGFNPKSWS 1816
L+++AG+ V +++ + Y MGV+ P +KI R++W + + + K+W
Sbjct: 787 LLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSAMARFWWGSSDTQRKIHWKNWD 846
Query: 1817 SVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISR 1996
S+C K FGG+ FKD FN A+L + AWRL +PQ +V+ A + N D L +
Sbjct: 847 SMCNLKCFGGMGFKDLTIFNDALLGRQAWRLTREPQSLLGRVMKAKYFPNCDFLNAPLGH 906
Query: 1997 KNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
+SS+ W SI +LK+ IW +G+G
Sbjct: 907 -SSSYSWSSIWSSKALLKEGVIWRVGNG 933
Score = 68.2 bits (165), Expect(2) = 2e-38
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Frame = +3
Query: 2175 VADLTDTEKKTWNIQLLSQYFNPDQIKEIMTIKIPSKG-EDTLRWSLPYCGAFTTKYVYN 2351
V++L D ++ W LL + N ++ I+ + + D L W+ ++ K Y
Sbjct: 963 VSELIDFDRMEWKTSLLESFLNERDLRCILASPLSATPVPDELTWAFTKDATYSVKTAY- 1021
Query: 2352 ELSKNNAGISHLHQMEGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQL 2531
+ + + HQ W+ +W+++V K++ FL + C LPV+ L ++ D L
Sbjct: 1022 -MIGKGGNLDNFHQ----AWVDIWSLDVSPKVRHFLWRLCTTSLPVRSLLKHRHLTDDDL 1076
Query: 2532 CPLCLNSEETSTHLFLHCQFAEVIWVGIYAALLQSLKEKIFVIDWIVSW 2678
CP ET H C +W+ L S + + D +VSW
Sbjct: 1077 CPWGCGEIETQRHAIFDCPKMRDLWLDSGCQNLCSRDASMSMCDLLVSW 1125
>ref|XP_007203344.1| hypothetical protein PRUPE_ppa020282mg [Prunus persica]
gi|462398875|gb|EMJ04543.1| hypothetical protein
PRUPE_ppa020282mg [Prunus persica]
Length = 1496
Score = 140 bits (352), Expect(2) = 3e-61
Identities = 87/294 (29%), Positives = 158/294 (53%), Gaps = 6/294 (2%)
Frame = +2
Query: 65 IDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDSVINNLLPHGSDH 244
ID +D+ +TG +TW R + ++ R+DRALA +W + F + + +L P SDH
Sbjct: 536 IDTCRFKDLGYTGPKYTW--WRNNPMEIRIRLDRALATADWCSRFLGTKVIHLNPTKSDH 593
Query: 245 APIPLHIHLPDKTNNKPYRFYKVWLSNPLCKEVLR----KSCHLEESLHLNELPKKIQQT 412
P+ K +RF ++W + C + ++ ++C E K++ T
Sbjct: 594 LPL-----------KKLFRFEEMWAEHVNCMQTIQDGWQRTCRGSAPFTTTE---KLKCT 639
Query: 413 TEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTT--LIKSLEDQLNKWYDKSAQIT 586
L W+ +FGH+ +I+ T+ L + ++P T L +L QL+ K+
Sbjct: 640 RHKLLGWSKCNFGHLPNQIKITREKLGELLDAPPSHHTAELRNALTKQLDSLMAKNEVYW 699
Query: 587 YHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKEEI*KLLLKHFRDI 766
SR L DRN+K+FH KA+ RRRRN I L+D +G+W + ++ + + ++ +F+ +
Sbjct: 700 RQCSRATWLKAGDRNSKFFHYKASSRRRRNTISALEDEHGHWQTTEQGLTQTVVNYFQHL 759
Query: 767 YTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINPWGVPGPDG 928
++S+ + ++++ ++ VTE+ NQ L+ + + +EIK A+FQ++P PGPDG
Sbjct: 760 FSSTGSSEYTEVVDGVRGRVTEEMNQALLAVFTPEEIKIALFQMHPSKAPGPDG 813
Score = 125 bits (314), Expect(2) = 3e-61
Identities = 69/183 (37%), Positives = 98/183 (53%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ++W IV ++V+ V +FF TG+ +IN T LIPK+ RPISLCN+ Y
Sbjct: 818 FYQKYWPIVGEDVVAAVLHFFKTGKLLKRINFTHVALIPKVHEPKNMMQLRPISLCNVLY 877
Query: 1120 KLITKILVVQ------------------------------EMVHYM-KKTLFYTGVVGIK 1206
K+ K+L + E++H M KK G + +K
Sbjct: 878 KIGAKVLTTRLKAILPTLISDTQSAFVPGRAISDNSIVAFELLHMMHKKNQGRQGYLALK 937
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
+DM K +DR+EWSFL ++ +GF+ +W QLI CV+T S +LNG P+ +IP RGLR
Sbjct: 938 IDMSKAYDRVEWSFLEALMKGMGFAPRWIQLIMECVTTVSYSFMLNGNPVGYVIPQRGLR 997
Query: 1387 QDD 1395
Q D
Sbjct: 998 QGD 1000
Score = 103 bits (258), Expect(2) = 6e-30
Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 1/208 (0%)
Frame = +2
Query: 1460 FSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGK 1639
FS +M+R + + L +R +D ++ YL + RSR C + +I ++ GW+ K
Sbjct: 1086 FSINMDRTDQDNLAAVLGVRRVDQHDVYLGLPTHVGRSRRQCFNSLKERIWKKIQGWKAK 1145
Query: 1640 LINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFW-NHK*NKGFNPKSWS 1816
L++ AG+ + ++ Y M F++P +I Q+ RY+W + + SW+
Sbjct: 1146 LLSFAGKEILLKVVAQAVPIYMMNCFLIPKCLCNEIQQVMARYWWVEQDGQRKIHWLSWN 1205
Query: 1817 SVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISR 1996
+C K+ GGL F++ FN+A+L K WRL+ P +L A + KN L I
Sbjct: 1206 KLCLPKQEGGLGFRNLYAFNMALLAKQLWRLIQTPNSLVACILKARYFKNCSILEAQIGH 1265
Query: 1997 KNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
+ S++WQS+ ++++ W IG+G
Sbjct: 1266 -SPSYIWQSLCKARVLIEKGSRWRIGNG 1292
Score = 56.6 bits (135), Expect(2) = 6e-30
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 13/189 (6%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYNSNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNPDQIKE 2258
G ++ W P S + ++ + +V L + W LL +F+ +++
Sbjct: 1292 GHSVRIWGDRWLPNSESFQVSSPQVEGFEEAKVNSLINPVTLQWKEDLLQAWFSAEEVNC 1351
Query: 2259 IMTIKIPSKGE-DTLRWSLPYCGAFTTKYVYN------------ELSKNNAGISHLHQME 2399
I I + + D L W G +T + ++ + + N I Q+
Sbjct: 1352 IRNIPLSFRHPPDILIWHFERDGQYTVRSGHDVARRVLLQQDGDDTNMNGGPIVACEQV- 1410
Query: 2400 GKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLFL 2579
W K+W VP K+++F+ + +ILP K L + + + C C +EET H+ L
Sbjct: 1411 ---WKKIWKARVPPKVRIFIWRALLNILPTKDNLIHRRISELRGCVFC-GAEETVAHVLL 1466
Query: 2580 HCQFAEVIW 2606
C A W
Sbjct: 1467 RCPMAIASW 1475
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 139 bits (351), Expect(2) = 1e-59
Identities = 84/316 (26%), Positives = 162/316 (51%), Gaps = 8/316 (2%)
Frame = +2
Query: 5 SEKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNN 184
SEK +S I + ++ D+ F G FTW+N+R ++ R+DR +AN+
Sbjct: 150 SEKKGGDGFNSREADIFRNAMEECHFMDLGFVGYEFTWTNNRGGDANIQERLDRFVANDL 209
Query: 185 WFTSFKDSVINNLLPHGSDHAPIPLHIHLPDKT-----NNKPYRFYKVWLSNPLCKEVLR 349
W F S +++L SDH PI + +K +RF +WL EV++
Sbjct: 210 WKIKFPGSFVSHLPKRKSDHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESDEVVK 269
Query: 350 KSCHLEESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNS-PRQDTT 526
++ +N + +T L W+ + FGHV EIR Q+ ++ S P +D
Sbjct: 270 ETWMRGTDAGIN-----LARTANKLLSWSKQKFGHVAKEIRMCQHQMKVLMESEPSEDNI 324
Query: 527 L-IKSLEDQLNKWYDKSAQITYHQ-SREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDS 700
+ +++L+ ++++ +K ++ +HQ SR+ + D+N K+FH KA+ R +RN++ +++
Sbjct: 325 MHMRALDARMDE-LEKREEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNNVRRIRNE 383
Query: 701 NGNWISNKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIK 880
G W +++++ + +F +++ S N +LN+++P +T++ L +E+
Sbjct: 384 AGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPILNIVKPQITDELGTQLDAPFRREEVS 443
Query: 881 EAMFQINPWGVPGPDG 928
A+ Q++P PGPDG
Sbjct: 444 AALAQMHPNKAPGPDG 459
Score = 120 bits (300), Expect(2) = 1e-59
Identities = 67/183 (36%), Positives = 93/183 (50%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ FWD + ++ + V N +N T VLIPK P D RPISLCN+ Y
Sbjct: 464 FYQHFWDTIGEDVTTKVLNMLNNVDNIGAVNQTHIVLIPKKKHCESPVDFRPISLCNVLY 523
Query: 1120 KLITK------------------------------ILVVQEMVHYM-KKTLFYTGVVGIK 1206
K++ K +LV E H++ KK G +G+K
Sbjct: 524 KIVAKVLANRMKMVLPMVIHESQSGFVPGRLITDNVLVAYECFHFLRKKKTGKKGYLGLK 583
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LDM K +DR+EW FL ++L LGF T++ +L+ CV++A S+L+NG P P+RGLR
Sbjct: 584 LDMSKAYDRVEWCFLENMMLKLGFPTRYTKLVMNCVTSARFSVLVNGQPSRNFFPSRGLR 643
Query: 1387 QDD 1395
Q D
Sbjct: 644 QGD 646
Score = 89.4 bits (220), Expect(2) = 2e-30
Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 1/209 (0%)
Frame = +2
Query: 1460 FSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGK 1639
+S+++ D + KL + ++ +EKYL I S+ +++ +L GW+GK
Sbjct: 732 YSRNLEPDKINTLQMKLAFKTVEGHEKYLGLPTFIGSSKKRVFQAIQDRVWKKLKGWKGK 791
Query: 1640 LINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK-*NKGFNPKSWS 1816
++QAGR V I+ Y M F++P I ++ R +FW K + +W
Sbjct: 792 YLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIIDGIEKMCRNFFWGQKEEERRVAWVAWE 851
Query: 1817 SVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISR 1996
+ K+ GGL ++ FN A+L K AWR+LT+P +V+ + + L +S
Sbjct: 852 KLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKPDSLMARVIKGKYFPRSNFLEARVS- 910
Query: 1997 KNSSWVWQSIQHGL*VLKQY*IWEIGDGK 2083
N S+ +SI V+++ IGDG+
Sbjct: 911 PNMSFTCKSILSARAVIQKGMCRVIGDGR 939
Score = 72.8 bits (177), Expect(2) = 2e-30
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Frame = +3
Query: 2172 RVADLTDTEKKTWNIQLLSQYFNPDQIKEIMTIKIP-SKGEDTLRWSLPYCGAFTTK--Y 2342
+V +L ++ WN++LL+ F P + I I + K D W + G FT + Y
Sbjct: 971 KVCELISNDR--WNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAY 1028
Query: 2343 VYNELSKNNAGISHLHQMEGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNM 2522
+ L G S K W K+W ++P K+++F K H+ L V + + N+
Sbjct: 1029 YHELLEDRKTGPSTSRGPNLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNI 1088
Query: 2523 DQLCPLCLNSEETSTHLFLHCQFAEVIW 2606
D CP C EET+ HL C + W
Sbjct: 1089 DGACPRCGEKEETTEHLIWGCDESSRAW 1116
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 135 bits (341), Expect(2) = 3e-58
Identities = 89/308 (28%), Positives = 145/308 (47%)
Frame = +2
Query: 5 SEKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNN 184
SEK F + +GL D+ TGN +W R S +K+R+DRAL N +
Sbjct: 88 SEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYS-HFIKSRLDRALGNCS 146
Query: 185 WFTSFKDSVINNLLPHGSDHAPIPLHIHLPDKTNNKPYRFYKVWLSNPLCKEVLRKSCHL 364
W F S L GSDH P+ + P +KP+RF + + ++++ L
Sbjct: 147 WSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWEL 206
Query: 365 EESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKSLE 544
+ + KI + +++ W + + I++ Q L+ A ++ D +LI S+
Sbjct: 207 ARQ---DSVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSADIPDPSLIGSIT 263
Query: 545 DQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNK 724
+L Y + SR Q L DRN YFH RR N++ ++D +G +
Sbjct: 264 QELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEE 323
Query: 725 EEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINP 904
E+I + +F++I+T+SN + + + P ++ N+ LIKI S EIKEA+F I+
Sbjct: 324 EQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISA 383
Query: 905 WGVPGPDG 928
PGPDG
Sbjct: 384 DKAPGPDG 391
Score = 119 bits (298), Expect(2) = 3e-58
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 32/187 (17%)
Frame = +1
Query: 931 TSGFYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCN 1110
++ F+ +WDI+E ++ +++FF+ ++N T LIPK+ K D RPI+LCN
Sbjct: 393 SASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCN 452
Query: 1111 ITYKLITKIL------------------------------VVQEMVHYMKKT--LFYTGV 1194
+ YK++ KIL + E++H+++ + Y +
Sbjct: 453 VQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSM 512
Query: 1195 VGIKLDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPT 1374
IK DM K +DR++W+FL ++L+ LGF KW + + CV T S L+NG P ++P+
Sbjct: 513 A-IKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPS 571
Query: 1375 RGLRQDD 1395
RGLRQ D
Sbjct: 572 RGLRQGD 578
Score = 63.5 bits (153), Expect(2) = 1e-19
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 3/179 (1%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYNSNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNP--DQI 2252
G I W S + + D V DL + K+WN++ + ++ DQI
Sbjct: 864 GDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQYEDQI 923
Query: 2253 KEIMTIKIPSKGEDTLRWSLPYCGAFTTKYVYNELSKNNAGISHLHQMEGKGWLK-LWNM 2429
++I +P +D+L W G +TTK Y N+ S L W K +W +
Sbjct: 924 RKITINALPL--QDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDF----NWQKNIWKI 977
Query: 2430 EVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLFLHCQFAEVIW 2606
K++ FL K LPV + L +N + C C E+S HL L C +A+ +W
Sbjct: 978 HTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRC-GQTESSLHLMLLCPYAKKVW 1035
Score = 62.4 bits (150), Expect(2) = 1e-19
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
Frame = +2
Query: 1538 KYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGKLINQAGRAVQIQTTLSTSVQYQMGVF 1717
KYL R + + +++I R W + ++ AG+ + ++ LS+ Y M F
Sbjct: 690 KYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCF 749
Query: 1718 MLPDKTHKKINQIQRRYFWNHK*NK-GFNPKSWSSVCTSKRFGGLRFKDSKKFNIAMLTK 1894
LP K+I + R++W+ K +K SW + GGL F++ + K
Sbjct: 750 KLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AK 802
Query: 1895 LAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISRKNSSWVWQSIQHGL*VLKQY*IWEIG 2074
L+WR+L +P +VL + + S +S W+ I G +L++ W IG
Sbjct: 803 LSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIG 862
Query: 2075 DG 2080
G
Sbjct: 863 QG 864
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 151 bits (381), Expect(2) = 6e-58
Identities = 85/294 (28%), Positives = 154/294 (52%), Gaps = 4/294 (1%)
Frame = +2
Query: 59 DTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDSVINNLLPHGS 238
+ ID ++D+ + GN FTW + L++ R+DR LAN+ W +F + +L + S
Sbjct: 163 EVIDDCAVKDLGYVGNRFTWQRGNSPSTLIRERLDRMLANDEWCDNFPSWEVVHLPRYRS 222
Query: 239 DHAPIPLHIHLPD--KTNNKPYRFYKVWLSNPLCKEVLRKSCHLEESLHLNELPKKIQQT 412
DHAP+ L + D + NK ++F +WLS C +++ ++ + ++ ++ +
Sbjct: 223 DHAPLLLKTGVNDSFRRGNKLFKFEAMWLSKEECGKIVEEAWNGSAG---EDITNRLDEV 279
Query: 413 TEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTL--IKSLEDQLNKWYDKSAQIT 586
+ +L W K+FG++K + LL + +TL + + L++ +
Sbjct: 280 SRSLSTWATKTFGNLKKRKKEALTLLNGLQQRDPDASTLEQCRIVSGDLDEIHRLEESYW 339
Query: 587 YHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKEEI*KLLLKHFRDI 766
+ ++R + D+N KYFH+KA+ R+RRN I+ L D NG W +EEI ++ +F +
Sbjct: 340 HARARANEIRDGDKNTKYFHHKASQRKRRNTINELLDENGVWKKGREEICGVVQHYFEGL 399
Query: 767 YTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINPWGVPGPDG 928
+ + +P L + CV+ N L+ +PS DE+KEA+F ++P PG DG
Sbjct: 400 FATDSPVNMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDG 453
Score = 103 bits (256), Expect(2) = 6e-58
Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 31/185 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
F+Q+FW I+ ++++S VQ+++ +N T VLIPK +D RPISLC + Y
Sbjct: 458 FFQKFWHILGSDVISFVQSWWRGMGDLGVVNKTCIVLIPKCDHPQSMKDFRPISLCTVLY 517
Query: 1120 KLITKIL------------------------------VVQEMVHYMK-KTLFYTGVVGIK 1206
K+++K L V E+ H MK K GV +K
Sbjct: 518 KILSKTLANRLKVILPAIISPNQSAFVPRRLITDNALVAFEIFHAMKRKDANKNGVCALK 577
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LDM K +DR+EW FL +++ +GF W + C+S+ + +NGV + P+RGLR
Sbjct: 578 LDMSKAYDRVEWCFLERVMKKMGFCDGWIDRVMACISSVSFTFNVNGVVEGSLSPSRGLR 637
Query: 1387 QDDCI 1401
Q D I
Sbjct: 638 QGDPI 642
Score = 104 bits (259), Expect(2) = 7e-36
Identities = 66/209 (31%), Positives = 109/209 (52%), Gaps = 1/209 (0%)
Frame = +2
Query: 1460 FSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGK 1639
FS+ ++R+ + L ++E+D EKYL II RS+ +I +L GW+ K
Sbjct: 726 FSRSVDRERRSAIVNVLGVKEVDRQEKYLGLPTIIGRSKKVTFACIKERIWKKLQGWKEK 785
Query: 1640 LINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFW-NHK*NKGFNPKSWS 1816
L+++ G+ V I++ Y M VF LP +I+ + R++W + N+ + SW
Sbjct: 786 LLSRPGKEVLIKSVAQAIPTYMMSVFSLPSGLIDEIHSLLARFWWGSSDTNRKMHWHSWD 845
Query: 1817 SVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISR 1996
++C K GGL F+D FN ++L K AWRL T Q ++L A + K+ + L+E
Sbjct: 846 TLCYPKSMGGLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYRLLQARYFKSSE-LLEARRG 904
Query: 1997 KNSSWVWQSIQHGL*VLKQY*IWEIGDGK 2083
N S+ W+SI +L + W +G G+
Sbjct: 905 YNPSFTWRSIWGSKSLLLEGLKWCVGSGE 933
Score = 76.3 bits (186), Expect(2) = 7e-36
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 23/198 (11%)
Frame = +3
Query: 2166 DTRVADLTDTEKKTWNIQLLSQYFNPDQIKEIMTIKIPSKGEDTLRWSLPYC-GAFTTKY 2342
D +V DL D + WNI+ + Q F ++ + +++I + D R+ P G F+ +
Sbjct: 961 DLKVCDLIDVARGAWNIESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRS 1020
Query: 2343 VY--NELSKNNAGISHLHQMEGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNN 2516
Y L + E + W ++W ++ P K+ FL + C L VK +LFS++
Sbjct: 1021 CYWLGRLGPVRTWQLQHGERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHI 1080
Query: 2517 NMDQLCPLCLNSEETSTHLFLHCQFAEVIW-VGIYAALLQSLKEKIFV--IDWI------ 2669
++D C +C + +E+ H C FA IW V +A+L+ + F ++W+
Sbjct: 1081 SVDATCSVCGDPDESINHALFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWLAKHATK 1140
Query: 2670 -----------VSWFCNN 2690
WFC N
Sbjct: 1141 EEFRTMCSFMWAGWFCRN 1158
>ref|XP_007224193.1| hypothetical protein PRUPE_ppa017155mg, partial [Prunus persica]
gi|462421129|gb|EMJ25392.1| hypothetical protein
PRUPE_ppa017155mg, partial [Prunus persica]
Length = 916
Score = 137 bits (344), Expect(2) = 1e-57
Identities = 87/296 (29%), Positives = 159/296 (53%), Gaps = 9/296 (3%)
Frame = +2
Query: 65 IDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDSVINNLLPHGSDH 244
ID G +D+ +TG +TW R + ++ R+DR LA +W + F + + +L P SDH
Sbjct: 42 IDTCGFKDMGYTGPKYTW--WRNNPMEIRIRLDRVLATADWCSRFLGTKVIHLNPTKSDH 99
Query: 245 APIPLHIH---LPDKTNNKPYRFYKVWLSNPLCKEVLR----KSCHLEESLHLNELPKKI 403
P+ + I L + K +RF ++W + C + ++ ++C E K+
Sbjct: 100 LPLKVTISERMLLNGRRKKLFRFEEMWAEHVNCMQTIQDGWQRTCRGSAPFTTTE---KL 156
Query: 404 QQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTT--LIKSLEDQLNKWYDKSA 577
+ T L W+ +FGH+ +I+ T+ L + ++P T L +L QL+ K+
Sbjct: 157 KCTRHQLLGWSKCNFGHLPNQIKITREKLGELLDAPPSHHTVELRNALTKQLDSLMAKNE 216
Query: 578 QITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKEEI*KLLLKHF 757
+SR L DRN+K+FH KA+ RRRN I L+D +G+W + ++ + + ++ +F
Sbjct: 217 VYWRQRSRATWLKAGDRNSKFFHYKASSCRRRNTISALEDEHGHWQTTEQGLTQTVVNYF 276
Query: 758 RDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINPWGVPGPD 925
+ +++S + ++++ ++ VTE+ NQ L+ + +EIK A+FQ++P PGPD
Sbjct: 277 QHLFSSIGSSDYTEVVDGVRGRVTEEMNQALLAEFTPEEIKIALFQMHPSKAPGPD 332
Score = 116 bits (291), Expect(2) = 1e-57
Identities = 68/183 (37%), Positives = 96/183 (52%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ++W IV ++V+ V +FF TG+ +IN T LIPK+ RPISLCN+
Sbjct: 338 FYQKYWQIVGEDMVAAVLHFFKTGKLLKKINFTHVALIPKVHEPKNMTQLRPISLCNVFN 397
Query: 1120 KLITKIL------------------------------VVQEMVHYM-KKTLFYTGVVGIK 1206
K+ K+L V E++H M KK G + +K
Sbjct: 398 KIGAKVLATHLKAILPTLISDTQSAFAPDRAISDNSIVAFELLHMMHKKNHGRQGYLALK 457
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
+DM K +DR+EWSFL ++ +GF+ +W QLI V+T S +LNG P+ +IP RGLR
Sbjct: 458 IDMSKAYDRVEWSFLEALMKGMGFAPRWIQLIMEYVTTVSYSFMLNGNPVGYVIPQRGLR 517
Query: 1387 QDD 1395
Q D
Sbjct: 518 QGD 520
Score = 91.7 bits (226), Expect(2) = 3e-24
Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 1/171 (0%)
Frame = +2
Query: 1571 SRDNCLDPSINKI*NRLPGWQGKLINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKIN 1750
SR C + +I ++ GW+ KL++ AG+ + ++ Y M F++P +I
Sbjct: 573 SRRQCFNSLKERIWKKIQGWKAKLLSVAGKEILLKVVAQAVPIYMMNCFLIPKCLCDEIQ 632
Query: 1751 QIQRRYFWNHK*N-KGFNPKSWSSVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQK 1927
Q+ RY+W + + + SW+ +C K+ GGL F++ FN+ +L K WRL+ P
Sbjct: 633 QVMARYWWGEQDGQRKIHWLSWNKLCLPKQEGGLGFRNLYAFNMVLLAKQLWRLIQTPNS 692
Query: 1928 EWVKVLNAIHVKNKDPLVEDISRKNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
++L A + KN L I + S++WQS+ ++++ W IG+G
Sbjct: 693 LVARILKARYFKNCSILEAQIGH-SPSYIWQSLCKARVLIEKGSRWRIGNG 742
Score = 50.1 bits (118), Expect(2) = 3e-24
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYNSNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNPDQIKE 2258
G ++ W P S + ++ + ++ +V L + W LL +F+ +++
Sbjct: 742 GHSVRIWGDRWLPNSESFQVSSPQTEGFDEAKVNSLINPVTMQWKEDLLQAWFSAEEVNC 801
Query: 2259 IMTIKIPSK-GEDTLRWSLPYCGAFTTKYVYNELSK-------------NNAGISHLHQM 2396
I I + + D L W G +T + NE+++ N I Q+
Sbjct: 802 IRNIPLSFRYPPDILIWHFERDGQYTV-WSGNEVARRVLLQQDGDDTNMNGGPIVACEQV 860
Query: 2397 EGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLF 2576
W K+W VP K+++F+ + +ILP K L ++ + C C +EET H+
Sbjct: 861 ----WKKIWKARVPPKVRIFIWRALLNILPTKDNLIHRSISELGGCVFC-GAEETVVHVL 915
Query: 2577 L 2579
L
Sbjct: 916 L 916
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa Japonica Group]
Length = 2367
Score = 144 bits (363), Expect(2) = 3e-57
Identities = 89/310 (28%), Positives = 158/310 (50%), Gaps = 3/310 (0%)
Frame = +2
Query: 8 EKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNW 187
E + + P Q D + L D+ F G P T+ N R+ + VK R+DR +A++ W
Sbjct: 876 EHFSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKW 935
Query: 188 FTSFKDSVINNLLPHGSDHAPIPLHIHL--PDKTNNKPYRFYKVWLSNPLCKEVLRKSCH 361
+ + + +L+ SDH PI L++ + P + K + VW P +V+ ++
Sbjct: 936 RDIYSTAQVVHLVSPCSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWV 995
Query: 362 LE-ESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKS 538
+ E L ++ K + + ALR W+ +V E+ + + L + S D T+I++
Sbjct: 996 VAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIES-NADRTVIRN 1054
Query: 539 LEDQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWIS 718
D +N+ + + +SR L +DRN K+FH++A +R ++N I L+D+N S
Sbjct: 1055 ATDHMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHS 1114
Query: 719 NKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQI 898
+ ++ + ++F+D+YT+ + LIQ VT+ N+ L + + DEI +A+FQI
Sbjct: 1115 STMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQI 1174
Query: 899 NPWGVPGPDG 928
P PGPDG
Sbjct: 1175 GPLKSPGPDG 1184
Score = 107 bits (268), Expect(2) = 3e-57
Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ+ W ++ +I+ V+ FF TG P +N T VLIPK RD RPISLCN+ Y
Sbjct: 1189 FYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVY 1248
Query: 1120 KLITKILVVQ------------------------------EMVHYMKKTLFYT-GVVGIK 1206
K+++K LV + E H M+K K
Sbjct: 1249 KVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYK 1308
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LD+ K +DR++W FL + LGF+ +W I CV++ + NG ++ PTRGLR
Sbjct: 1309 LDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLR 1368
Query: 1387 QDDCII 1404
Q D ++
Sbjct: 1369 QGDPLL 1374
Score = 92.8 bits (229), Expect(2) = 4e-27
Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Frame = +2
Query: 1604 KI*NRLPGWQGKLINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNH- 1780
KI R+ W ++ G+ V I+ + Y MG+F LP+ + ++ + ++W+
Sbjct: 1505 KIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSM 1564
Query: 1781 K*NKGFNPKSWSSVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHV 1960
+ + K+W S+ K GGL F+D + FN A+L + AWRL+T P +VL A +
Sbjct: 1565 NGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYF 1624
Query: 1961 KNKDPLVEDISRKNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
+ L++ NSS W+SI++GL +LK+ IW +G+G
Sbjct: 1625 PH-GSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNG 1663
Score = 58.5 bits (140), Expect(2) = 4e-27
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYN-----SNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNP 2243
G+ I+ + +W P ++ N R ++S DL TE +W++ + QYF+
Sbjct: 1663 GNSIRIWRDSWLPRDHSRRPITGKANCRLKWVS------DLI-TEDGSWDVPKIHQYFHN 1715
Query: 2244 DQIKEIMTIKIPSKGE-DTLRWSLPYCGAFTTKYVY-------NELSKNNAGISHLHQME 2399
+ I+ I I S+ E D + W G F+ + Y N +++G ++++
Sbjct: 1716 LDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNIN--- 1772
Query: 2400 GKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLFL 2579
K W +W +VP K+++F + + L + +C +C E H
Sbjct: 1773 -KAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALC 1831
Query: 2580 HCQFAEVIW 2606
C A +W
Sbjct: 1832 RCIQASQLW 1840
>gb|EEC68887.1| hypothetical protein OsI_37529 [Oryza sativa Indica Group]
Length = 1765
Score = 144 bits (363), Expect(2) = 3e-57
Identities = 89/310 (28%), Positives = 158/310 (50%), Gaps = 3/310 (0%)
Frame = +2
Query: 8 EKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNW 187
E + + P Q D + L D+ F G P T+ N R+ + VK R+DR +A++ W
Sbjct: 617 EHFSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKW 676
Query: 188 FTSFKDSVINNLLPHGSDHAPIPLHIHL--PDKTNNKPYRFYKVWLSNPLCKEVLRKSCH 361
+ + + +L+ SDH PI L++ + P + K + VW P +V+ ++
Sbjct: 677 RDIYSTAQVVHLVSPCSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWV 736
Query: 362 LE-ESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKS 538
+ E L ++ K + + ALR W+ +V E+ + + L + S D T+I++
Sbjct: 737 VAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIES-NADRTVIRN 795
Query: 539 LEDQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWIS 718
D +N+ + + +SR L +DRN K+FH++A +R ++N I L+D+N S
Sbjct: 796 ATDHMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHS 855
Query: 719 NKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQI 898
+ ++ + ++F+D+YT+ + LIQ VT+ N+ L + + DEI +A+FQI
Sbjct: 856 STMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQI 915
Query: 899 NPWGVPGPDG 928
P PGPDG
Sbjct: 916 GPLKSPGPDG 925
Score = 107 bits (268), Expect(2) = 3e-57
Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ+ W ++ +I+ V+ FF TG P +N T VLIPK RD RPISLCN+ Y
Sbjct: 930 FYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVY 989
Query: 1120 KLITKILVVQ------------------------------EMVHYMKKTLFYT-GVVGIK 1206
K+++K LV + E H M+K K
Sbjct: 990 KVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYK 1049
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LD+ K +DR++W FL + LGF+ +W I CV++ + NG ++ PTRGLR
Sbjct: 1050 LDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLR 1109
Query: 1387 QDDCII 1404
Q D ++
Sbjct: 1110 QGDPLL 1115
Score = 96.7 bits (239), Expect(2) = 2e-24
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Frame = +2
Query: 1559 IIPRSRDNCLDPSINKI*NRLPGWQGKLINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTH 1738
I P RD KI R+ W ++ G+ V I+ + Y MG+F LP+
Sbjct: 1213 IFPVERDRTFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVI 1272
Query: 1739 KKINQIQRRYFWNH-K*NKGFNPKSWSSVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLT 1915
+ ++ + ++W+ + + K+W S+ K GGL F+D + FN A+L + AWRL+T
Sbjct: 1273 DDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLIT 1332
Query: 1916 QPQKEWVKVLNAIHVKNKDPLVEDISRKNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
P +VL A + + L++ NSS W+SI++GL +LK+ IW +G+G
Sbjct: 1333 YPDSLCARVLKAKYFPH-GSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNG 1386
Score = 45.4 bits (106), Expect(2) = 2e-24
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYN-----SNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNP 2243
G+ I+ + +W P ++ N R ++S DL TE +W++ + QYF+
Sbjct: 1386 GNSIRIWRDSWLPRDHSRRPITGKANCRLKWVS------DLI-TEDGSWDVPKIHQYFHN 1438
Query: 2244 DQIKEIMTIKIPSKG-EDTLRWSLPYCGAFTTKYVY-------NELSKNNAGISHLHQME 2399
+ I+ I I S+ ED + W G F+ + Y N +++G ++++
Sbjct: 1439 LDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNIN--- 1495
Query: 2400 GKGWLKLWNMEVPHKIQMF 2456
K W +W +VP K+++F
Sbjct: 1496 -KAWEMIWKCKVPQKVKIF 1513
>ref|NP_001066197.2| Os12g0156200 [Oryza sativa Japonica Group]
gi|108862221|gb|ABA96496.2| retrotransposon protein,
putative, unclassified, expressed [Oryza sativa Japonica
Group] gi|255670064|dbj|BAF29216.2| Os12g0156200 [Oryza
sativa Japonica Group]
Length = 1764
Score = 144 bits (363), Expect(2) = 3e-57
Identities = 89/310 (28%), Positives = 158/310 (50%), Gaps = 3/310 (0%)
Frame = +2
Query: 8 EKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNW 187
E + + P Q D + L D+ F G P T+ N R+ + VK R+DR +A++ W
Sbjct: 273 EHFSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKW 332
Query: 188 FTSFKDSVINNLLPHGSDHAPIPLHIHL--PDKTNNKPYRFYKVWLSNPLCKEVLRKSCH 361
+ + + +L+ SDH PI L++ + P + K + VW P +V+ ++
Sbjct: 333 RDIYSTAQVVHLVSPCSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWV 392
Query: 362 LE-ESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKS 538
+ E L ++ K + + ALR W+ +V E+ + + L + S D T+I++
Sbjct: 393 VAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIES-NADRTVIRN 451
Query: 539 LEDQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWIS 718
D +N+ + + +SR L +DRN K+FH++A +R ++N I L+D+N S
Sbjct: 452 ATDHMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHS 511
Query: 719 NKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQI 898
+ ++ + ++F+D+YT+ + LIQ VT+ N+ L + + DEI +A+FQI
Sbjct: 512 STMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQI 571
Query: 899 NPWGVPGPDG 928
P PGPDG
Sbjct: 572 GPLKSPGPDG 581
Score = 107 bits (268), Expect(2) = 3e-57
Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ+ W ++ +I+ V+ FF TG P +N T VLIPK RD RPISLCN+ Y
Sbjct: 586 FYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVY 645
Query: 1120 KLITKILVVQ------------------------------EMVHYMKKTLFYT-GVVGIK 1206
K+++K LV + E H M+K K
Sbjct: 646 KVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYK 705
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LD+ K +DR++W FL + LGF+ +W I CV++ + NG ++ PTRGLR
Sbjct: 706 LDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLR 765
Query: 1387 QDDCII 1404
Q D ++
Sbjct: 766 QGDPLL 771
Score = 92.8 bits (229), Expect(2) = 4e-27
Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Frame = +2
Query: 1604 KI*NRLPGWQGKLINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNH- 1780
KI R+ W ++ G+ V I+ + Y MG+F LP+ + ++ + ++W+
Sbjct: 902 KIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSM 961
Query: 1781 K*NKGFNPKSWSSVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHV 1960
+ + K+W S+ K GGL F+D + FN A+L + AWRL+T P +VL A +
Sbjct: 962 NGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYF 1021
Query: 1961 KNKDPLVEDISRKNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
+ L++ NSS W+SI++GL +LK+ IW +G+G
Sbjct: 1022 PH-GSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNG 1060
Score = 58.5 bits (140), Expect(2) = 4e-27
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYN-----SNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNP 2243
G+ I+ + +W P ++ N R ++S DL TE +W++ + QYF+
Sbjct: 1060 GNSIRIWRDSWLPRDHSRRPITGKANCRLKWVS------DLI-TEDGSWDVPKIHQYFHN 1112
Query: 2244 DQIKEIMTIKIPSKGE-DTLRWSLPYCGAFTTKYVY-------NELSKNNAGISHLHQME 2399
+ I+ I I S+ E D + W G F+ + Y N +++G ++++
Sbjct: 1113 LDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNIN--- 1169
Query: 2400 GKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLFL 2579
K W +W +VP K+++F + + L + +C +C E H
Sbjct: 1170 -KAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALC 1228
Query: 2580 HCQFAEVIW 2606
C A +W
Sbjct: 1229 RCIQASQLW 1237
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 130 bits (326), Expect(2) = 1e-56
Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 10/294 (3%)
Frame = +2
Query: 77 GLRDVPFTGNPFTWSNHRKSTK-LVKTRIDRALANNNWFTSFKDSVINNLLPHGSDHAPI 253
GL D+ F G+ FTW NH S + ++ R+DRA+AN W F + + N P SDH P+
Sbjct: 415 GLDDLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPV 474
Query: 254 PLHIHLPDK-----TNNKPYRFYKVWLSNPLCKEVLRKSCHLEESLHLNELPKKIQQTTE 418
+ + +K + +RF WL KEV++++ + L + +
Sbjct: 475 IIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVSAGLQGLPVHASLAGVAA 534
Query: 419 ALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKSLEDQLNKWYDKSAQIT--YH 592
L W+ G ++ +++ + L+ + P +++ E+ L +K Q Y
Sbjct: 535 GLSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVR--EEVLRYRLEKLEQQVDIYW 592
Query: 593 QSREQILWFD--DRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKEEI*KLLLKHFRDI 766
+ R W + DRN +FH + RRRRN I+ L+ +G+W+ +E+ ++++ F+ +
Sbjct: 593 KQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQL 652
Query: 767 YTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINPWGVPGPDG 928
+TS+ LL+++ V+ N+ L + +E+KEA+ I PGPDG
Sbjct: 653 FTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDG 706
Score = 120 bits (300), Expect(2) = 1e-56
Identities = 71/185 (38%), Positives = 88/185 (47%), Gaps = 31/185 (16%)
Frame = +1
Query: 934 SGFYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNI 1113
+GFY+ WD+V + V G P N VLIPK+ +D RPISLCN+
Sbjct: 709 AGFYKACWDVVGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKKPELIKDLRPISLCNV 768
Query: 1114 TYKLITK------------------------------ILVVQEMVHYMK-KTLFYTGVVG 1200
YKL++K IL+ EM HYM+ K G
Sbjct: 769 CYKLVSKVLANRLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAA 828
Query: 1201 IKLDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRG 1380
KLDM K +DR+EWSFLH ++L LGF T W LI CVST + +NG E P RG
Sbjct: 829 FKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRG 888
Query: 1381 LRQDD 1395
LRQ D
Sbjct: 889 LRQGD 893
Score = 105 bits (261), Expect(2) = 8e-41
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 3/205 (1%)
Frame = +2
Query: 1475 NRDSCEE--VTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGKLIN 1648
N S E+ V L M+ NE+YL + RSR +I R+ GW+ KL++
Sbjct: 982 NTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 1041
Query: 1649 QAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFW-NHK*NKGFNPKSWSSVC 1825
+AG+ + I+ + MG F L +I+++ +Y+W N + + + SW+ +
Sbjct: 1042 RAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLT 1101
Query: 1826 TSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISRKNS 2005
K GGL F+D FN+AML K WRL+ P +VL A + D N
Sbjct: 1102 LPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGD-CFRPKQTSNV 1160
Query: 2006 SWVWQSIQHGL*VLKQY*IWEIGDG 2080
S+ W+SIQ GL VL+ IW +GDG
Sbjct: 1161 SYTWRSIQKGLRVLQNGMIWRVGDG 1185
Score = 92.0 bits (227), Expect(2) = 8e-41
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 9/199 (4%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYNSNT-NARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNPDQIK 2255
GS I W P ++ R + L T+V +L D TW+ LLSQ F + +
Sbjct: 1185 GSKINIWADPWIPRGWSRKPMTPRGANLV--TKVEELIDPYTGTWDEDLLSQTFWEEDVA 1242
Query: 2256 EIMTIKIPSKGEDTLRWSLPYCGAFTTKYVYN-------ELSKNNA-GISHLHQMEGKGW 2411
I +I + + ED L W G FT K Y S+N G+S+ + W
Sbjct: 1243 AIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFW 1302
Query: 2412 LKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLFLHCQF 2591
KLW + VP KI+ FL + CH+ L ++ L + ++D C +C E + HLF C+
Sbjct: 1303 KKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKP 1362
Query: 2592 AEVIWVGIYAALLQSLKEK 2648
+ +W + L+S+ E+
Sbjct: 1363 VKKVWQALNLEELRSMLEQ 1381
>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1357
Score = 134 bits (338), Expect(2) = 1e-55
Identities = 91/321 (28%), Positives = 163/321 (50%), Gaps = 12/321 (3%)
Frame = +2
Query: 2 FSEKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANN 181
+ EK ++ + + +D L D+ F G TW R ++ R+DR + +
Sbjct: 145 YDEKEGGASRERRAIVGFRNVMDDCSLGDLRFVGQWHTWERGRSPESRIRERLDRFIVSR 204
Query: 182 NWFTSFKDSVINNLLPHGSDHAPIPLHI----HLPDKTNNKPYRFYKVWLSNPLCKEVLR 349
+W F ++ I++ + + SDHA I L +P + + F WL + C+EV+R
Sbjct: 205 SWLHLFPEAFIDHQVRYCSDHAAIVLRCLGNEGMPRRRAGG-FWFETFWLLDDTCEEVVR 263
Query: 350 KSCHLEESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTL 529
+ + E + E K+ L+ W+ K+FG ++ +I + L A+ + T
Sbjct: 264 GAWNAAEGGRICE---KLGAVARELQGWSKKTFGSLRKKIEAVEKKLHAAQG----EATS 316
Query: 530 IKS------LEDQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTL 691
I S LE +L++ + K+ Y +SR + DRN YFH+KA+ R++RN I +
Sbjct: 317 IDSWERCVGLERELDELHAKNEAYWYLRSRVAEVKDGDRNTSYFHHKASQRKKRNLIHGI 376
Query: 692 QDSNGNWISNKEEI*KLLLKHFRDIYTSSNPTMD--ADLLNLIQPCVTEK*NQMLIKIPS 865
D G W + EEI ++ ++F++I+TSS P+ + ++L ++ VT++ N +L+K S
Sbjct: 377 FDGGGRWQTEGEEIECVVERYFQEIFTSSEPSSNDFQEVLQHVKRSVTQEYNDILLKPYS 436
Query: 866 SDEIKEAMFQINPWGVPGPDG 928
+EI A+ ++P PGPDG
Sbjct: 437 KEEIFAALSDMHPCKAPGPDG 457
Score = 111 bits (278), Expect(2) = 1e-55
Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ+FW I+ + + V + P +N T LIPK+ T + RPISLCN+ Y
Sbjct: 462 FYQRFWHIIGDEVFNFVSSILHNYSCPGNVNCTNIALIPKVKSPTVVSEFRPISLCNVLY 521
Query: 1120 KLITKILVVQ------------------------------EMVHYMKK-TLFYTGVVGIK 1206
K+ +K +V++ E+ H MKK G++ +K
Sbjct: 522 KIASKAIVLRLKRFLPCIATENQSAFVPGRLISDNSLIALEIFHTMKKRNNSRKGLMAMK 581
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LDM K +DR+EW FL ++LL +GF +W L+ CV+T S ++NG + P+RGLR
Sbjct: 582 LDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLVMSCVATVSYSFIINGRVCGSVTPSRGLR 641
Query: 1387 QDD 1395
Q D
Sbjct: 642 QGD 644
Score = 103 bits (257), Expect(2) = 3e-38
Identities = 62/208 (29%), Positives = 111/208 (53%), Gaps = 1/208 (0%)
Frame = +2
Query: 1460 FSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGK 1639
FS+ ++ + EE+ L MR++D ++KYL + RS+ ++++ +L GW+ K
Sbjct: 730 FSRGVSCEKKEELITLLHMRQVDRHQKYLGIPALCGRSKKVLFRELLDRMWKKLRGWKEK 789
Query: 1640 LINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK*N-KGFNPKSWS 1816
L+++AG+ V I+ + Y MGV+ LP ++I+ R++W K + + + SW
Sbjct: 790 LLSRAGKEVLIKAVIQALPTYLMGVYKLPVAVIQEIHSAMARFWWGGKGDERKMHWLSWE 849
Query: 1817 SVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISR 1996
+C K GG+ FKD FN A+L K WRLL + +V++A + + D +
Sbjct: 850 KMCKPKCMGGMGFKDLAVFNDALLGKQVWRLLHNKESLLSRVMSAKYYPHGDVRYARLGY 909
Query: 1997 KNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
+ S+ W+SI ++ + IW +GDG
Sbjct: 910 SH-SYSWRSIWGAKSLVLEGLIWRVGDG 936
Score = 85.1 bits (209), Expect(2) = 3e-38
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 1/169 (0%)
Frame = +3
Query: 2175 VADLTDTEKKTWNIQLLSQYFNPDQIKEIMTIKIPSKG-EDTLRWSLPYCGAFTTKYVYN 2351
V DL D E+K WN++L+ ++FN + I+ I + ++ +D L W+ G ++ K Y
Sbjct: 966 VGDLMDVERKEWNVELIERHFNERDQQCILAIPLSTRCLQDELTWAYSKDGTYSVKTAY- 1024
Query: 2352 ELSKNNAGISHLHQMEGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQL 2531
+ + H++ W LW++ V K++ FL + C LPV+K L ++ +
Sbjct: 1025 -MLGKGGNLDDFHRV----WNILWSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAG 1079
Query: 2532 CPLCLNSEETSTHLFLHCQFAEVIWVGIYAALLQSLKEKIFVIDWIVSW 2678
CP C +ET HLF C + +W + + +L E + D +V W
Sbjct: 1080 CPCCAREDETQFHLFYRCPMSLKLWEELGSYILLPGIEDEAMCDTLVRW 1128
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 128 bits (321), Expect(2) = 7e-55
Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 2/310 (0%)
Frame = +2
Query: 5 SEKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNN 184
SEK SF I +GL D+ ++GNPF+W R V+ R+DRA++NN+
Sbjct: 42 SEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRYDW-FVRQRLDRAMSNNS 100
Query: 185 WFTSFKDSVINNLLPHGSDHAPIPLHIHLPDKTNNKPYRFYKVWLSNPLCKEVLRKSCHL 364
W SF L GSDH P+ + + +RF N + +++++
Sbjct: 101 WLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQFRFDNRLRDNDVVNALIQETWTN 160
Query: 365 EESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKSLE 544
+ K+ Q + +W + I +TQ L++A + + T I +L
Sbjct: 161 AGDA---SVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPPNPTTIGALT 217
Query: 545 DQLNKWYDKSAQITYHQSREQILWFD--DRNNKYFHNKANFRRRRNHIDTLQDSNGNWIS 718
L Y Q + + R ++LW DRN YFH RR +N + ++D NG
Sbjct: 218 ATLEHAYKLEEQ--FWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMEDINGVAQH 275
Query: 719 NKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQI 898
+ +I +++ +F+ I+TS + + + I+P V++ N L +IP+ +E+K+A+F I
Sbjct: 276 EEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSI 335
Query: 899 NPWGVPGPDG 928
N PGPDG
Sbjct: 336 NASKAPGPDG 345
Score = 115 bits (289), Expect(2) = 7e-55
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Frame = +1
Query: 931 TSGFYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCN 1110
T+GFY +W I+ T++ ++ FF + FP ++N T LIPK K D RPI+LCN
Sbjct: 347 TAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCN 406
Query: 1111 ITYKLITKI------------------------------LVVQEMVHYMKKTLFYTGV-V 1197
I YK++ KI L+ E++H+++ + +
Sbjct: 407 IFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSM 466
Query: 1198 GIKLDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTR 1377
+K DM K +DR+EW FL ++L GF + W + CV++ S L+NG P ++PTR
Sbjct: 467 AVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTR 526
Query: 1378 GLRQDD 1395
GLRQ D
Sbjct: 527 GLRQGD 532
Score = 84.7 bits (208), Expect(2) = 2e-23
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 1/209 (0%)
Frame = +2
Query: 1460 FSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGK 1639
FS R +V R L++R+ KYL R + + I+KI + W +
Sbjct: 618 FSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASR 677
Query: 1640 LINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK*N-KGFNPKSWS 1816
++QAG+ V ++ L++ Y M F LP +KI + R++W+ K + + + +WS
Sbjct: 678 FLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWS 737
Query: 1817 SVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDISR 1996
+ K GGL F+D ++ N ++L KL WRLL P+ ++L + + +E
Sbjct: 738 KLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYC-HSSSFMECKLP 796
Query: 1997 KNSSWVWQSIQHGL*VLKQY*IWEIGDGK 2083
S W+SI G +LK+ W I +G+
Sbjct: 797 SQPSHGWRSIIAGREILKEGLGWLITNGE 825
Score = 53.9 bits (128), Expect(2) = 2e-23
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +3
Query: 2166 DTRVADLTDTEKKTWNIQLLSQYFNPDQIKEIMTIKIPS-KGEDTLRWSLPYCGAFTTKY 2342
D RV+ L + W+ ++ P+ I + PS +G D L W G +T++
Sbjct: 853 DLRVSALINQNTLQWDWNKIAVIL-PNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRS 911
Query: 2343 VYNELSKNNAGISHLHQMEGKGWLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNM 2522
Y S + I Q + LW ++ KI+ + K + LPV +L ++ +
Sbjct: 912 GYGIASVASIPIP---QTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISP 968
Query: 2523 DQLCPLCLNSEETSTHLFLHCQFAEVIW 2606
C C + E++THLF HC+FA +W
Sbjct: 969 SAACHRC-GAPESTTHLFFHCEFAAQVW 995
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267156|emb|CAB77868.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 1077
Score = 103 bits (257), Expect(3) = 1e-54
Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 1/259 (0%)
Frame = +2
Query: 155 RIDRALANNNWFTSFKDSVINNLLPHGSDHAPIPLHI-HLPDKTNNKPYRFYKVWLSNPL 331
R+DRA+AN++W ++ L GSDH P+ H+ KT N +R+ + NP
Sbjct: 172 RLDRAMANSDWIIAYPSGRSEYLRFEGSDHRPLVTSFDHVQKKTKNI-FRYDRTLKDNPE 230
Query: 332 CKEVLRKSCHLEESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSP 511
+++ ++ S ++ ++ AL +W+ + + + EI + L++A
Sbjct: 231 ISKLMNETWKSNPSAKVDY---RLHLCRAALLNWSKEHHLNSQKEILSLRVQLEEALTDD 287
Query: 512 RQDTTLIKSLEDQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTL 691
+ L L Y K +SR L D+N+ +FH N RR N I +
Sbjct: 288 AATQDSVDLLNQNLLLAYRKEETFWKQRSRNLWLALGDKNSCFFHAATNSRRAINTISVI 347
Query: 692 QDSNGNWISNKEEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSD 871
++S G + EI + + +F+DI+TS + + + PC+T N LI +P+
Sbjct: 348 ENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDMNNTLISLPTVA 407
Query: 872 EIKEAMFQINPWGVPGPDG 928
EIK+A I+P PG DG
Sbjct: 408 EIKQACLSIHPDKAPGRDG 426
Score = 82.8 bits (203), Expect(3) = 1e-54
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 37/207 (17%)
Frame = +1
Query: 931 TSGFYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCN 1110
++ F+Q W V I + VQ FF++ P +INHT LIPK+ K D RPI+LC+
Sbjct: 428 SASFFQSNWSTVSEEITAEVQAFFISEILPQKINHTHVRLIPKIPAPQKVSDYRPIALCS 487
Query: 1111 ITYKLITK------------------------------ILVVQEMVHYMKKT-LFYTGVV 1197
+ YK+I K +L+ E +HY+K + +
Sbjct: 488 VYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNVLITHEALHYLKNSGALVNCYM 547
Query: 1198 GIKLDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNG------VPME 1359
+K DM K +DR+EW F+ L +GF + I +S + NG V M
Sbjct: 548 AVKTDMSKAYDRLEWDFVKAALEEMGFHHHFVGWIIEVLSRMCLKAQENGSLPGIRVAMG 607
Query: 1360 PIIPTRGLRQDDCIIFTRGNTRSMVNL 1440
L DD + F R + +S + L
Sbjct: 608 CPRVNHLLFADDTMFFCRVDPKSCLKL 634
Score = 77.8 bits (190), Expect(3) = 1e-54
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 1/160 (0%)
Frame = +2
Query: 1490 EEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQGKLINQAGRAVQ 1669
E V + L +++ KYL + R + + +++I R W + ++ AG+
Sbjct: 668 ERVKQILLIQKEGGQGKYLGLPELFGRKKKDLFTAIVDRIKQRALSWSSRFLSSAGKLTM 727
Query: 1670 IQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK*N-KGFNPKSWSSVCTSKRFGG 1846
+++ LST Y M F LP K+I R++W+ K + + + SW + S + GG
Sbjct: 728 LKSVLSTMPTYTMSCFQLPLSLCKRIQSTLTRFWWDSKPDQRKMSWISWQKMTLSFKSGG 787
Query: 1847 LRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKN 1966
L F+D + FN A+L KL+WRLL P K+L + K+
Sbjct: 788 LGFRDVQTFNKALLAKLSWRLLQNPSCLLAKLLLGKYCKH 827
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 137 bits (345), Expect(2) = 3e-54
Identities = 91/308 (29%), Positives = 154/308 (50%), Gaps = 9/308 (2%)
Frame = +2
Query: 32 SSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDSV 211
S P Q +D GL D+ F G FTWSN + + K R+DRA+AN + F+D +
Sbjct: 159 SEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCL 218
Query: 212 INNLLPHGSDHAPIPLHIHLPDKTNNK-----PYRFYKVWLSNPLCKEVLRKSCHLEES- 373
+ N++ SDH I + + + + +RF WL +EV+ S + +
Sbjct: 219 VENVITTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAG 278
Query: 374 -LHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLI--KSLE 544
+ L + +QQ +L+DW+ SFG V+ +I + + L+ + SP D + K +E
Sbjct: 279 CVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIE 338
Query: 545 DQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNK 724
QL + ++K + +SR L DRN +FH +A+ RRR N I L +G+ ++
Sbjct: 339 QQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQ 398
Query: 725 EEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINP 904
E I ++ + ++++S ++L+ I V + N L K +++EIK A+FQ+
Sbjct: 399 EGIKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGS 458
Query: 905 WGVPGPDG 928
PGPDG
Sbjct: 459 TKAPGPDG 466
Score = 104 bits (260), Expect(2) = 3e-54
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 30/184 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ W I+E +I + V+ F + + P + + VLIPK+ ++ RPISLCN+ Y
Sbjct: 471 FYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLY 530
Query: 1120 KLITKIL------------------------------VVQEMVHYMKKTLFYTGVVGIKL 1209
K+ +K+L V E +H ++K +K+
Sbjct: 531 KIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKI 590
Query: 1210 DMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLRQ 1389
DM K +DR+EW++L L LGFS W + CVS+ ++ +NG +P++P+RG+RQ
Sbjct: 591 DMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQ 650
Query: 1390 DDCI 1401
D I
Sbjct: 651 GDPI 654
Score = 78.6 bits (192), Expect(2) = 1e-26
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 1/210 (0%)
Frame = +2
Query: 1457 FFSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQG 1636
FF K V LQ+ L + YL I + N +I R+ GW
Sbjct: 737 FFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTD 796
Query: 1637 KLINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK*NKG-FNPKSW 1813
+ +++AG ++ Y M F +P +K+ ++W + K + KSW
Sbjct: 797 RPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSW 856
Query: 1814 SSVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDIS 1993
S + T K GG+ F++ FN AML + WRLLT P +VL + N E
Sbjct: 857 SWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSS-FWEAAQ 915
Query: 1994 RKNSSWVWQSIQHGL*VLKQY*IWEIGDGK 2083
K+ S+ W+S+ G +L + W +GDGK
Sbjct: 916 PKSPSFTWRSLLFGRELLAKGVRWGVGDGK 945
Score = 70.9 bits (172), Expect(2) = 1e-26
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 10/186 (5%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYNSNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNPDQIKE 2258
G IK NW P + S D V+ L + + + W+ L+ F D KE
Sbjct: 944 GKTIKIFSDNWIP-GFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKE 1002
Query: 2259 IMTIKIPSKGE-DTLRWSLPYCGAFTTKYVYN---------ELSKNNAGISHLHQMEGKG 2408
I+ I I G+ D W G ++ + YN + S + G++ K
Sbjct: 1003 ILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKD 1062
Query: 2409 WLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLFLHCQ 2588
W LW + P K+++ L + H+ L +L ++ C C N ++T H+FL C
Sbjct: 1063 WKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCP 1121
Query: 2589 FAEVIW 2606
FA IW
Sbjct: 1122 FAAQIW 1127
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 137 bits (345), Expect(2) = 3e-54
Identities = 91/308 (29%), Positives = 154/308 (50%), Gaps = 9/308 (2%)
Frame = +2
Query: 32 SSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDSV 211
S P Q +D GL D+ F G FTWSN + + K R+DRA+AN + F+D +
Sbjct: 116 SEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCL 175
Query: 212 INNLLPHGSDHAPIPLHIHLPDKTNNK-----PYRFYKVWLSNPLCKEVLRKSCHLEES- 373
+ N++ SDH I + + + + +RF WL +EV+ S + +
Sbjct: 176 VENVITTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAG 235
Query: 374 -LHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLI--KSLE 544
+ L + +QQ +L+DW+ SFG V+ +I + + L+ + SP D + K +E
Sbjct: 236 CVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIE 295
Query: 545 DQLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNK 724
QL + ++K + +SR L DRN +FH +A+ RRR N I L +G+ ++
Sbjct: 296 QQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQ 355
Query: 725 EEI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINP 904
E I ++ + ++++S ++L+ I V + N L K +++EIK A+FQ+
Sbjct: 356 EGIKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGS 415
Query: 905 WGVPGPDG 928
PGPDG
Sbjct: 416 TKAPGPDG 423
Score = 104 bits (260), Expect(2) = 3e-54
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 30/184 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ W I+E +I + V+ F + + P + + VLIPK+ ++ RPISLCN+ Y
Sbjct: 428 FYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLY 487
Query: 1120 KLITKIL------------------------------VVQEMVHYMKKTLFYTGVVGIKL 1209
K+ +K+L V E +H ++K +K+
Sbjct: 488 KIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKI 547
Query: 1210 DMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLRQ 1389
DM K +DR+EW++L L LGFS W + CVS+ ++ +NG +P++P+RG+RQ
Sbjct: 548 DMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQ 607
Query: 1390 DDCI 1401
D I
Sbjct: 608 GDPI 611
Score = 78.6 bits (192), Expect(2) = 1e-26
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 1/210 (0%)
Frame = +2
Query: 1457 FFSKHMNRDSCEEVTRKLQMRELDLNEKYLVTNFIIPRSRDNCLDPSINKI*NRLPGWQG 1636
FF K V LQ+ L + YL I + N +I R+ GW
Sbjct: 694 FFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTD 753
Query: 1637 KLINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKINQIQRRYFWNHK*NKG-FNPKSW 1813
+ +++AG ++ Y M F +P +K+ ++W + K + KSW
Sbjct: 754 RPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSW 813
Query: 1814 SSVCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQPQKEWVKVLNAIHVKNKDPLVEDIS 1993
S + T K GG+ F++ FN AML + WRLLT P +VL + N E
Sbjct: 814 SWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSS-FWEAAQ 872
Query: 1994 RKNSSWVWQSIQHGL*VLKQY*IWEIGDGK 2083
K+ S+ W+S+ G +L + W +GDGK
Sbjct: 873 PKSPSFTWRSLLFGRELLAKGVRWGVGDGK 902
Score = 70.9 bits (172), Expect(2) = 1e-26
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 10/186 (5%)
Frame = +3
Query: 2079 GSPIKALQHNWFPISYNSNTNARSSYLSNDTRVADLTDTEKKTWNIQLLSQYFNPDQIKE 2258
G IK NW P + S D V+ L + + + W+ L+ F D KE
Sbjct: 901 GKTIKIFSDNWIP-GFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKE 959
Query: 2259 IMTIKIPSKGE-DTLRWSLPYCGAFTTKYVYN---------ELSKNNAGISHLHQMEGKG 2408
I+ I I G+ D W G ++ + YN + S + G++ K
Sbjct: 960 ILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKD 1019
Query: 2409 WLKLWNMEVPHKIQMFL*KCCHDILPVKKKLFSKNNNMDQLCPLCLNSEETSTHLFLHCQ 2588
W LW + P K+++ L + H+ L +L ++ C C N ++T H+FL C
Sbjct: 1020 WKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCP 1078
Query: 2589 FAEVIW 2606
FA IW
Sbjct: 1079 FAAQIW 1084
>gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japonica Group]
Length = 1102
Score = 129 bits (325), Expect(2) = 4e-54
Identities = 78/286 (27%), Positives = 147/286 (51%), Gaps = 4/286 (1%)
Frame = +2
Query: 83 RDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDSVINNLLPHGSDHAPIPLH 262
R P G PFT+ N R+ V+ R+DRA+A+N W +F ++ + +L SDH PI L
Sbjct: 587 RGEPQMGTPFTYDNKRQGRNNVRVRLDRAIADNAWRDTFPNATLAHLASPRSDHCPISLQ 646
Query: 263 I--HLPDKTNNKPYRFYKVWLSNPLCKEVLRKS-CHLEESLHLNELPKKIQQTTEALRDW 433
+ + K + W P EV+++S L ++ +++ +L W
Sbjct: 647 LSQEMKQPARKKILHYEICWEREPSLPEVVQESWVEAGTKSDLGDISAALRKVMASLHSW 706
Query: 434 NHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKSLEDQLNKWYDKSAQITYHQSREQIL 613
+ F ++ E+++ + L + + D+ ++ D +N+ + + +SR L
Sbjct: 707 SKVKFKNIGRELQKARKKLAELLET-YADSAAVRQASDHMNELLYREEMLWLQRSRINWL 765
Query: 614 WFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKEEI*KLLLKHFRDIYTSSNPTMD 793
DRN ++FH+KA +R ++N I +L+DS G + + +L ++F+++Y S++P++D
Sbjct: 766 KEGDRNTRFFHSKAVWRAKKNRIQSLKDSAGTVHRSATAMEQLATEYFQEVY-SADPSLD 824
Query: 794 ADLL-NLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINPWGVPGPDG 928
++ + Q V+ + N+ L + +EI A+FQI P PGPDG
Sbjct: 825 HSIVSSFFQSKVSAQMNEALCSDLTEEEISTAIFQIGPLKAPGPDG 870
Score = 112 bits (279), Expect(2) = 4e-54
Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 31/183 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ+ W +++ +V V NFF+ G P IN T VLIPK+ T+ +D RPISLCN+ Y
Sbjct: 875 FYQRNWGTIKSEVVKAVHNFFIIGVMPEGINDTAIVLIPKIKQPTQLKDYRPISLCNVIY 934
Query: 1120 KLITKILVVQ------------------------------EMVHYMKKTLF-YTGVVGIK 1206
K+++K LV + E H+++K K
Sbjct: 935 KVVSKCLVNRLRPFLDELVSPNQSAFVPERLITDNALVAFECFHFIQKNKNPNKAACAYK 994
Query: 1207 LDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLR 1386
LD+ K ++R++W FL Q + +GF+ +W I CV+T S+ NG + PTRGLR
Sbjct: 995 LDLSKAYNRVDWRFLEQAMHKMGFAHRWVSWIMSCVTTVRYSVKFNGTLLSAFAPTRGLR 1054
Query: 1387 QDD 1395
Q D
Sbjct: 1055 QGD 1057
>ref|XP_004253275.1| PREDICTED: uncharacterized protein LOC101268853 [Solanum
lycopersicum]
Length = 1333
Score = 157 bits (397), Expect(2) = 1e-53
Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 7/307 (2%)
Frame = +2
Query: 29 NSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNWFTSFKDS 208
N + S + ++ I+ GL D+ + G +TW NHRK + R+DR + N+ W + S
Sbjct: 98 NINKSLEFIN-IIEACGLVDMGYHGQDYTWCNHRKDGARIWKRLDRGMTNDKWIETIPHS 156
Query: 209 VINNLLPHGSDHAPIPLHIHLPDKTNNKPYRFYKVWLSNPLCKEVLRKSCHLEESLH--L 382
I +L GSDH P+ + I K ++F W N E + K C + + +
Sbjct: 157 SITHLPSVGSDHCPLLMEICDIQSNTIKYFKFLNCWTENDSFLETVEK-CWKRDVIGNPM 215
Query: 383 NELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKSLE-DQLNK 559
K+++ T+ LR W+ + +G V +++ ++L++KA+N + + S + + +N
Sbjct: 216 WNFHTKLRRLTKTLRIWSKQEYGDVFEKVKLYEDLVKKAENIIIDNYSAKNSEKLNAINA 275
Query: 560 WYDKSAQITYH--QSREQILWFD--DRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKE 727
Y K +++ Y Q + Q+ W D N KYFH +R R I L D +GNWI +E
Sbjct: 276 EYIKFSKMEYKILQQKTQLHWLQEGDANTKYFHTVIRGKRNRMSIHKLMDESGNWIKGEE 335
Query: 728 EI*KLLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQINPW 907
EI K ++ I+T N + D+L I P +T++ N+ L +IP DE++ + +NP
Sbjct: 336 EIAKHACDYYEKIFTGMNGKIKEDILQCINPMITQEQNKDLDRIPDMDELRRTIMSMNPH 395
Query: 908 GVPGPDG 928
PGPDG
Sbjct: 396 SAPGPDG 402
Score = 82.8 bits (203), Expect(2) = 1e-53
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 30/182 (16%)
Frame = +1
Query: 940 FYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCNITY 1119
FYQ +DI++ ++++ V++F++ P + H LIPK+ + +D RPISL N T
Sbjct: 407 FYQVCFDIIKEDLLAAVKHFYVGNIMPRYLTHACLTLIPKIDHPCRLKDFRPISLSNFTN 466
Query: 1120 KLITK------------------------------ILVVQEMVHYMKKTLFYTGVVGIKL 1209
K+I+K IL+ QE+ H +KK + VV IKL
Sbjct: 467 KIISKILSTRLALILPSIVSANQSGFVKGRSIAENILLAQEIFHGIKKPKDGSNVV-IKL 525
Query: 1210 DMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTRGLRQ 1389
DM K +DR+ W++ +L +GFS + + +S + S+++NG RGL+Q
Sbjct: 526 DMVKAYDRVSWNYTCLVLRKMGFSEVFIDRVWRIMSNNWYSIVINGKRHGFFQSKRGLKQ 585
Query: 1390 DD 1395
D
Sbjct: 586 GD 587
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 127 bits (318), Expect(2) = 2e-53
Identities = 89/309 (28%), Positives = 144/309 (46%), Gaps = 2/309 (0%)
Frame = +2
Query: 8 EKHNFSTNSSPSFQIVHDTIDMHGLRDVPFTGNPFTWSNHRKSTKLVKTRIDRALANNNW 187
EK SF D +D + ++P GNPFTW + + +++R+DR N NW
Sbjct: 147 EKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTWGG-KTNEMWIQSRLDRCFGNKNW 205
Query: 188 FTSFKDSVINNLLPHGSDHAPIPLHIHLPDKTNNKPYRFYKVWLSNPLCKEVLRKSCHLE 367
F F S L GSDH P+ + + + +RF K + P KE + ++ +
Sbjct: 206 FRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRGNFRFDKRLFNQPNVKETIVQAWNGS 265
Query: 368 ESLHLNELPKKIQQTTEALRDWNHKSFGHVKTEIRRTQNLLQKAKNSPRQDTTLIKSLED 547
+ + K++ AL W ++ + T I + + L+ ++S L+ SL++
Sbjct: 266 QRNENLLVLDKLKHCRSALSRWKKENNINSSTRITQARAALELEQSSGFPRADLVFSLKN 325
Query: 548 QLNKWYDKSAQITYHQSREQILWFDDRNNKYFHNKANFRRRRNHIDTLQDSNGNWISNKE 727
L K +SR + + D+N +FH R + HID L D NG + +K+
Sbjct: 326 DLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQHIDQLCDVNG--LFHKD 383
Query: 728 EI*K--LLLKHFRDIYTSSNPTMDADLLNLIQPCVTEK*NQMLIKIPSSDEIKEAMFQIN 901
E+ K + +F D++ S++P+ DL QP VTE N LI S +EI+EA+F I
Sbjct: 384 EMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIR 443
Query: 902 PWGVPGPDG 928
PG DG
Sbjct: 444 SSSAPGVDG 452
Score = 112 bits (279), Expect(2) = 2e-53
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Frame = +1
Query: 931 TSGFYQQFWDIVETNIVSLVQNFFMTGQFPSQINHTFQVLIPKLGISTKPRDCRPISLCN 1110
T F+Q++W I+ + +QNFF+ G FP N T L+PK K D RPISLC+
Sbjct: 454 TGFFFQKYWSIICLQVTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCS 513
Query: 1111 ITYKLITK------------------------------ILVVQEMVHYMKKTLFYT-GVV 1197
+ YK+I+K IL+ E+VH ++ + G +
Sbjct: 514 VLYKIISKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFI 573
Query: 1198 GIKLDMEKTFDRMEWSFLHQILLHLGFSTKWCQLINYCVSTAFISMLLNGVPMEPIIPTR 1377
IK +M K FDR+EW+++ +L LGF KW I + +S+ S+L+N I+P+R
Sbjct: 574 AIKSNMSKAFDRVEWNYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSR 633
Query: 1378 GLRQDD 1395
GLRQ D
Sbjct: 634 GLRQGD 639
Score = 70.5 bits (171), Expect(2) = 2e-16
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Frame = +2
Query: 1571 SRDNCLDPSINKI*NRLPGWQGKLINQAGRAVQIQTTLSTSVQYQMGVFMLPDKTHKKIN 1750
S+ LD +++ RL GW + ++ G+ ++ + Y M F L T +
Sbjct: 762 SKVQLLDYIKDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMT 821
Query: 1751 QIQRRYFWNHK*NKGFNPKSWSS---VCTSKRFGGLRFKDSKKFNIAMLTKLAWRLLTQP 1921
++WN +K W S +C SK GGL F+D + FN A+L K AWRLL P
Sbjct: 822 SAMSDFWWNALEHK--RKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFP 879
Query: 1922 QKEWVKVLNAIHVKNKDPLVEDISRKNSSWVWQSIQHGL*VLKQY*IWEIGDG 2080
+ + + + +D L ++ + S+ W+SI HG +L + ++G+G
Sbjct: 880 NSLFARFFKSRYYDEEDFLDAEL-KATPSYAWRSILHGRDLLIKGFRKKVGNG 931
Score = 45.1 bits (105), Expect(2) = 2e-16
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 4/151 (2%)
Frame = +3
Query: 2166 DTRVADLTDTEKKTWNIQLLSQYFNPDQIKEIMTIKIPSKGEDTLRWSLPYCGAFTTKYV 2345
D RV DL + E + L + F P I+ I+ +D W G ++ K
Sbjct: 960 DLRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPVVSMDDFWVWLHSKSGEYSVKSG 1019
Query: 2346 YNELSKNNAG--ISHLHQMEGKGWLK--LWNMEVPHKIQMFL*KCCHDILPVKKKLFSKN 2513
Y + N I LK +W+ KI++FL + LPV ++ +
Sbjct: 1020 YWLAFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLWRILSSALPVAYQIIRRG 1079
Query: 2514 NNMDQLCPLCLNSEETSTHLFLHCQFAEVIW 2606
+D C +C E+ H+ C A +W
Sbjct: 1080 MPIDPRCQVCGEEGESINHVLFTCSLARQVW 1110