BLASTX nr result
ID: Papaver27_contig00027535
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00027535
(4116 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 244 e-143
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 256 e-143
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 249 e-139
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 241 e-127
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 239 e-126
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 230 e-125
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 261 e-124
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 222 e-124
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 236 e-120
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 236 e-120
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 248 e-119
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 238 e-118
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 261 e-117
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 253 e-111
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 244 e-110
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 259 e-110
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 194 e-108
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 251 e-102
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 239 e-100
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga... 196 e-100
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 244 bits (623), Expect(4) = e-143
Identities = 145/452 (32%), Positives = 229/452 (50%), Gaps = 6/452 (1%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAGD---NNLPWCILGDFNAYLFSHDKEGGAALTSA 2385
FV TFVY N R LW ++ A + ++ PW ILGDFN L D G + +
Sbjct: 103 FVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITR 162
Query: 2384 NLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDF 2205
+ F C+ S++ P+ G YTW N Q+ + I K+DR+L+N +WL P S F
Sbjct: 163 GMEEFRECLLTSNISDLPFRGNHYTWWNNQENNP-IAKKIDRILVNDSWLIASPLSYGSF 221
Query: 2204 LTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWN-IKVQGTPMFIFV 2028
SDH ++ + G K ++ N +F+ + W+ + QG+ MF
Sbjct: 222 CAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLS 281
Query: 2027 TKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYA 1848
K +K + + ++ ++ +V A +L Q L +P E+E R +A
Sbjct: 282 KKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSY-LAGLEKEAHRSWA 340
Query: 1847 KKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIA 1668
+ A EE Q+SRV W++ GD+NT FFH + R A N I L D G ++ + ++
Sbjct: 341 ELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQ 400
Query: 1667 AECIAYYTNLFGQHSATPFDAQAWDQIE--LQHKVSEEEAISLTMPITNDEIILALSTID 1494
C+ ++ LFG S A+ QI + K E L ++ +I +
Sbjct: 401 THCVDFFKELFGSSSHL-ISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALP 459
Query: 1493 SDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNASTF 1314
S+K+PGP+G++S FFK WS++G I V+ F S +LLG+ N+T V+++PK PNA
Sbjct: 460 SNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRI 519
Query: 1313 NDYRPIACCNVIYKCISKILTIRLKHVVKSWL 1218
++RPI+CCN IYK ISK+L RL++++ W+
Sbjct: 520 TEFRPISCCNAIYKVISKLLARRLENILPLWI 551
Score = 231 bits (589), Expect(4) = e-143
Identities = 122/321 (38%), Positives = 183/321 (57%), Gaps = 1/321 (0%)
Frame = -1
Query: 1221 VSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLD 1042
+SP QSAF+ R + +N++LA EL++ + + N + R LK+DLRKA+D + W ++ TL
Sbjct: 551 ISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLK 610
Query: 1041 KFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNAL 862
+ P RF+NW+ CIT+ FSI V+GS GY +G +G+RQG PLSP LFV+ M++ + L
Sbjct: 611 AANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRL 670
Query: 861 MLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVN 682
+ + G HP+ ++ L FADDL++ G S R + S L +F N +GLE+N
Sbjct: 671 LENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMN 730
Query: 681 NRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARI 502
KS+++ + ++ T A F L +L SD LID + AR
Sbjct: 731 TEKSAVYTAGLEDTDKEDTLA-FGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARF 789
Query: 501 KSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKH 322
W ++LSFAGR+ L ++ S + FW S F+LPK + T+ + FLW G ++T +
Sbjct: 790 NHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLW-GNDITRRG 848
Query: 321 P-SVKWSFVCLPYKEGGLGIR 262
V W CLP EGGLG+R
Sbjct: 849 DIKVSWQNSCLPKAEGGLGLR 869
Score = 55.1 bits (131), Expect(4) = e-143
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = -2
Query: 233 NFKHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVDASRCWRRILDHREAASKFVLHL 54
N + IW + +D++WV W N ++ +FW + S W+ IL R A +F+
Sbjct: 879 NLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGA 938
Query: 53 IGNGRGTKLWKDRW 12
+GNG+ W D W
Sbjct: 939 VGNGQLLSYWYDHW 952
Score = 52.8 bits (125), Expect(4) = e-143
Identities = 27/85 (31%), Positives = 44/85 (51%)
Frame = -1
Query: 2826 WNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQESNKDIIRNNILPSWMYSDNYSYHA 2647
WN+RG N+ +++ + + ++ET V+E + P W NY + A
Sbjct: 7 WNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFAA 66
Query: 2646 LGRIWLLWDPVSVKINFLFSSAQYI 2572
LGRIW++WDP +V++ L S Q I
Sbjct: 67 LGRIWVVWDP-AVEVTVLSKSDQTI 90
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 256 bits (654), Expect(4) = e-143
Identities = 121/322 (37%), Positives = 187/322 (58%)
Frame = -1
Query: 1209 QSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLDKFHI 1030
QSAF+ R + +N++LA EL+++YH++ + RCA+KID+ KA+D ++W L+
Sbjct: 562 QSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGF 621
Query: 1029 PQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNALMLKQ 850
P+ FI+W+++CIT FS+ VNG GY + RG+RQGC LSPYLFV+ MDV + ++ K
Sbjct: 622 PREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKA 681
Query: 849 VQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVNNRKS 670
+ HP+CK +THL FADDL+V G ++S + F+ +GL ++ KS
Sbjct: 682 AAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKS 741
Query: 669 SIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARIKSWK 490
+++++ + AT + F ++ RLS +DC+ L++ V RI SW
Sbjct: 742 TVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWT 801
Query: 489 ERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKHPSVK 310
R LS+AGR+ L +L S+ FW + F LP+K + L + FLWSG E+ +
Sbjct: 802 SRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKIS 861
Query: 309 WSFVCLPYKEGGLGIRCIEATN 244
W VC P EGGLG+R ++ N
Sbjct: 862 WHMVCKPKDEGGLGLRSLKEAN 883
Score = 201 bits (512), Expect(4) = e-143
Identities = 144/462 (31%), Positives = 215/462 (46%), Gaps = 16/462 (3%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAGD---NNLPWCILGDFNAYL--FSHDKEGGAALT 2391
F +FVY N E R LW ++ + + PW +LGDFN L H + +
Sbjct: 102 FFCSFVYASNYVEERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMV 161
Query: 2390 SANLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVT 2211
+ + F + L G +TW NK++ I KLDRVLIN W F S +
Sbjct: 162 TPGMRDFQQVINYCSLTDMAAQGPLFTWCNKRE-HGLIMKKLDRVLINDCWNQTFSQSYS 220
Query: 2210 DFLTCGISDHSLMVTSVFSGRGTVT---KAYRYYNTWEEESDFLGVVAAAWN----IKVQ 2052
F G SDH S+ S G K +++ N + DF +V+ W + +
Sbjct: 221 VFEAGGCSDHLRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILS 280
Query: 2051 GTPMFIFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAE 1872
+ +F F L +K + + + R N S + A L Q +P + ++ E
Sbjct: 281 TSTLFRFSKNLKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSM-AMEEE 339
Query: 1871 REEVRDYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTK 1692
+ + A EE KQ+S++ W Q+GD NT FH + R A N I + G
Sbjct: 340 NAAYSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIV 399
Query: 1691 LTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQIELQH----KVSEEEAISLTMPITND 1524
T +I AE ++ P D + ELQ + S+ + SL P+T +
Sbjct: 400 KTKGDEIKAEAERFFREFL---QLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAE 456
Query: 1523 EIILALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSL 1344
EI L + SDK+PGP+G++S FFK W +IG +F V+S F L +N+T+++L
Sbjct: 457 EIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILAL 516
Query: 1343 IPKIPNASTFNDYRPIACCNVIYKCISKILTIRLKHVVKSWL 1218
IPK A DYRPI+CCNV+YK ISKI+ RLK V+ ++
Sbjct: 517 IPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFI 558
Score = 65.9 bits (159), Expect(4) = e-143
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -2
Query: 227 KHIWDIVINKDTIWVQWVQQNLIKGKDFWLLK-TLVDASRCWRRILDHREAASKFVLHLI 51
K +W IV + +++WV+WV Q+L++ FW +K T+ S W+++L +RE A +
Sbjct: 889 KLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEV 948
Query: 50 GNGRGTKLWKDRW 12
GNG+ T W D W
Sbjct: 949 GNGKQTSFWYDNW 961
Score = 59.3 bits (142), Expect(4) = e-143
Identities = 29/85 (34%), Positives = 45/85 (52%)
Frame = -1
Query: 2826 WNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQESNKDIIRNNILPSWMYSDNYSYHA 2647
WN+RGLN K + I NN + LVET V+ES + + W NY ++
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65
Query: 2646 LGRIWLLWDPVSVKINFLFSSAQYI 2572
GRIW+LW +V+++ ++ S Q +
Sbjct: 66 RGRIWVLWRK-NVRLSPIYKSCQLL 89
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 249 bits (635), Expect(4) = e-139
Identities = 148/443 (33%), Positives = 240/443 (54%)
Frame = -2
Query: 2558 LFVRTFVYRYNSEELRDDLWYKISNFAGDNNLPWCILGDFNAYLFSHDKEGGAALTSANL 2379
+F VY ++ R LW ++ NF + P ++GD+NA + D+ G ++ A
Sbjct: 102 MFKMAAVYGLHTIADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAET 161
Query: 2378 YRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDFLT 2199
+ V + L P G FY+W+NK RI+ ++D+ +N+AW++ +PD V ++
Sbjct: 162 SDLRSFVLKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYRE 221
Query: 2198 CGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWNIKVQGTPMFIFVTKL 2019
GISDHS ++ ++ + + +++ N +++ F+ VV AW M +L
Sbjct: 222 AGISDHSPLIFNLATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRL 281
Query: 2018 *NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYAKKA 1839
VK+AL ++ K+F+ QV + LA VQ +VS + + E++ + K +
Sbjct: 282 QAVKRALKSFHSKKFSKAHCQVEELRRKLAAVQALPEVSQVS-ELQEEEKDLIAQLRKWS 340
Query: 1838 RYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIAAEC 1659
+ES+ KQ+SR++W+ LGD+N+ FF +I R ARN+I++L + G +LT + +I E
Sbjct: 341 TIDESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEI 400
Query: 1658 IAYYTNLFGQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIILALSTIDSDKAP 1479
+Y L G S++ +A + + K+S L PIT EI AL+ ID KAP
Sbjct: 401 CNFYRRLLGT-SSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAP 459
Query: 1478 GPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNASTFNDYRP 1299
G +GF+S FFK W VI + + + F + + +N T V+LIPKI A DYRP
Sbjct: 460 GLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRP 519
Query: 1298 IACCNVIYKCISKILTIRLKHVV 1230
IACC+ +YK ISKILT RL+ V+
Sbjct: 520 IACCSTLYKIISKILTKRLQAVI 542
Score = 218 bits (554), Expect(4) = e-139
Identities = 117/337 (34%), Positives = 179/337 (53%), Gaps = 1/337 (0%)
Frame = -1
Query: 1242 QACCQELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWD 1063
QA E+V Q+ FI R I DNI+LA EL+R Y+R + + RC +K+D+RKAYD + W
Sbjct: 539 QAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWV 598
Query: 1062 ALLTTLDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLL 883
L + L + P FI W+ C+ +SI++NG + ++G+RQG PLSP+LF L
Sbjct: 599 FLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALS 658
Query: 882 MDVFNALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSN 703
M+ + M + ++ HP+C+ +THL FADDLL+ + D S + + +FS
Sbjct: 659 MEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSK 718
Query: 702 RTGLEVNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALI 523
+GL+ + KS I+ V + + ++ S +L+ S C LI
Sbjct: 719 ASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLI 778
Query: 522 DHVIARIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSG 343
D + R + W LS+AGR+ L K IL SM +W F LPKK + + R FLW+G
Sbjct: 779 DKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTG 838
Query: 342 -IELTHKHPSVKWSFVCLPYKEGGLGIRCIEATNTAS 235
++ ++K P V W F+ P GGL + + N A+
Sbjct: 839 TVDTSYKAP-VAWDFLQQPKSTGGLNVTNMVLWNKAA 874
Score = 69.7 bits (169), Expect(4) = e-139
Identities = 34/88 (38%), Positives = 48/88 (54%)
Frame = -1
Query: 2835 IGCWNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQESNKDIIRNNILPSWMYSDNYS 2656
I WN+RGLNDP+K EV + + + I +C L ET V++ N I+ W + +NY+
Sbjct: 3 ITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINNYA 62
Query: 2655 YHALGRIWLLWDPVSVKINFLFSSAQYI 2572
GRIW+ W V IN L + Q I
Sbjct: 63 CSPRGRIWVGWLNNDVNINVLSVTEQVI 90
Score = 32.7 bits (73), Expect(4) = e-139
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 227 KHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVDASRCWRRILDHREAASK 69
K +W I +D +WV+WV IK ++ + + S R+I + RE ++
Sbjct: 877 KLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKIFESRELLTR 929
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 241 bits (614), Expect(3) = e-127
Identities = 120/322 (37%), Positives = 193/322 (59%)
Frame = -1
Query: 1227 ELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTT 1048
E++SP QSAF+ R + +N++LA E++ Y+ N + R LK+DLRKA+D +RWD +++
Sbjct: 551 EVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISA 610
Query: 1047 LDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFN 868
+P++F+ W++ CI+ P FS+MVNGS+ G+ + +G+RQG PLSPYLFVL M+VF+
Sbjct: 611 FRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFS 670
Query: 867 ALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLE 688
+L+ + G+ HP+ + ++HL FADD++V G S +S L F++ +GL
Sbjct: 671 SLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLH 730
Query: 687 VNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIA 508
VN K++++++ D +L+I + F +S +L S+ ++
Sbjct: 731 VNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVK 784
Query: 507 RIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTH 328
R +SW +SLSFAGRV L +++ ++ FW S FVL V + ++ FLWSG
Sbjct: 785 RFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDAS 844
Query: 327 KHPSVKWSFVCLPYKEGGLGIR 262
K + WS VCLP EGG+G+R
Sbjct: 845 KGAKIAWSGVCLPKNEGGVGLR 866
Score = 201 bits (511), Expect(3) = e-127
Identities = 139/454 (30%), Positives = 224/454 (49%), Gaps = 12/454 (2%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAGDNNL---PWCILGDFNAYLFSHDKEGGAALTSA 2385
FV + VY N E R +LW ++ A + W +LGDFN L + + A
Sbjct: 104 FVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQIL--NPESAINANIGR 161
Query: 2384 NLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDF 2205
+ F +C+ +S L+ Y G YTW NK + K+DR+L+N W FP + +F
Sbjct: 162 KIRAFRSCLLDSDLYDLVYKGSSYTWWNKCS-SRPLAKKIDRILVNDHWNTLFPSAYANF 220
Query: 2204 LTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAW-NIKVQGTPMFIFV 2028
SDHS + + +R++N + DFL ++ W + V G+ M+
Sbjct: 221 GEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVS 280
Query: 2027 TKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYA 1848
KL ++K + + ++ +++ +V A A + + Q+ +P V E E R +
Sbjct: 281 KKLKHLKLPICCFSRENYSDIEKRVSEAHAIVLHRQRITLTNPSVVHAT-LELEATRKWQ 339
Query: 1847 KKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIA 1668
A+ EES Q+S + W+ GDNNT +FH R + N I L D G ++ + Q I
Sbjct: 340 ILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIK 399
Query: 1667 AECIAYYTNLF--------GQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIIL 1512
+ N F G++S AQ+ + L + S ++ L ++ +I
Sbjct: 400 EGIKEHSCNFFESLLCGVEGENSL----AQSDMNLLLSFRCSVDQINDLERSFSDLDIQE 455
Query: 1511 ALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKI 1332
A ++ +KA GP+G+SS FFK W V+G + + V+ F S +LL + NAT + LIPKI
Sbjct: 456 AFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKI 515
Query: 1331 PNASTFNDYRPIACCNVIYKCISKILTIRLKHVV 1230
N+S D+RPI+C N +YK I+K+LT RLK ++
Sbjct: 516 TNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLL 549
Score = 65.5 bits (158), Expect(3) = e-127
Identities = 32/86 (37%), Positives = 47/86 (54%)
Frame = -1
Query: 2829 CWNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQESNKDIIRNNILPSWMYSDNYSYH 2650
CWN+RG N + N GL+ET V++ + +N+LP W + +NY +
Sbjct: 7 CWNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFS 66
Query: 2649 ALGRIWLLWDPVSVKINFLFSSAQYI 2572
LG+IW+LWDP SVK+ + S Q I
Sbjct: 67 VLGKIWVLWDP-SVKVVVIGRSLQMI 91
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 239 bits (609), Expect(3) = e-126
Identities = 119/322 (36%), Positives = 192/322 (59%)
Frame = -1
Query: 1227 ELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTT 1048
E++SP QSAF+ R + +N++LA E++ Y+ N + R LK+DLRKA+D +RWD +++
Sbjct: 551 EVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISA 610
Query: 1047 LDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFN 868
+P++F+ W++ CI+ P FS+MVNGS+ G+ + +G+RQG PLSPYLFVL M+VF+
Sbjct: 611 FRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFS 670
Query: 867 ALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLE 688
+L+ + G+ HP+ + ++HL FADD++V G S +S L F++ +GL
Sbjct: 671 SLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLH 730
Query: 687 VNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIA 508
VN K++++++ D +L+I + F +S +L S+ ++
Sbjct: 731 VNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVK 784
Query: 507 RIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTH 328
R +SW +SLSFAGRV L +++ ++ FW S FVL V + ++ FLWSG
Sbjct: 785 RFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDAS 844
Query: 327 KHPSVKWSFVCLPYKEGGLGIR 262
K + WS VCLP EGG+ +R
Sbjct: 845 KGAKIAWSGVCLPKNEGGVALR 866
Score = 201 bits (511), Expect(3) = e-126
Identities = 139/454 (30%), Positives = 224/454 (49%), Gaps = 12/454 (2%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAGDNNL---PWCILGDFNAYLFSHDKEGGAALTSA 2385
FV + VY N E R +LW ++ A + W +LGDFN L + + A
Sbjct: 104 FVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQIL--NPESAINANIGR 161
Query: 2384 NLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDF 2205
+ F +C+ +S L+ Y G YTW NK + K+DR+L+N W FP + +F
Sbjct: 162 KIRAFRSCLLDSDLYDLVYKGSSYTWWNKCS-SRPLAKKIDRILVNDHWNTLFPSAYANF 220
Query: 2204 LTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAW-NIKVQGTPMFIFV 2028
SDHS + + +R++N + DFL ++ W + V G+ M+
Sbjct: 221 GEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVS 280
Query: 2027 TKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYA 1848
KL ++K + + ++ +++ +V A A + + Q+ +P V E E R +
Sbjct: 281 KKLKHLKLPICCFSRENYSDIEKRVSEAHAIVLHRQRITLTNPSVVHAT-LELEATRKWQ 339
Query: 1847 KKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIA 1668
A+ EES Q+S + W+ GDNNT +FH R + N I L D G ++ + Q I
Sbjct: 340 ILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIK 399
Query: 1667 AECIAYYTNLF--------GQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIIL 1512
+ N F G++S AQ+ + L + S ++ L ++ +I
Sbjct: 400 EGIKEHSCNFFESLLCGVEGENSL----AQSDMNLLLSFRCSVDQINDLERSFSDLDIQE 455
Query: 1511 ALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKI 1332
A ++ +KA GP+G+SS FFK W V+G + + V+ F S +LL + NAT + LIPKI
Sbjct: 456 AFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKI 515
Query: 1331 PNASTFNDYRPIACCNVIYKCISKILTIRLKHVV 1230
N+S D+RPI+C N +YK I+K+LT RLK ++
Sbjct: 516 TNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLL 549
Score = 65.5 bits (158), Expect(3) = e-126
Identities = 32/86 (37%), Positives = 47/86 (54%)
Frame = -1
Query: 2829 CWNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQESNKDIIRNNILPSWMYSDNYSYH 2650
CWN+RG N + N GL+ET V++ + +N+LP W + +NY +
Sbjct: 7 CWNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFS 66
Query: 2649 ALGRIWLLWDPVSVKINFLFSSAQYI 2572
LG+IW+LWDP SVK+ + S Q I
Sbjct: 67 VLGKIWVLWDP-SVKVVVIGRSLQMI 91
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 230 bits (587), Expect(3) = e-125
Identities = 146/443 (32%), Positives = 219/443 (49%), Gaps = 5/443 (1%)
Frame = -2
Query: 2552 VRTFVYRYNSEELRDDLWYKISNFAGDN---NLPWCILGDFNAYLFSHDKEGGAALTSAN 2382
V +FVY E R LW +I +F+ D + PW +LGDFN L +
Sbjct: 2 VLSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDR 61
Query: 2381 LYR-FHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDF 2205
R F + + L + G +TW NK+ A + KLDR+L+N W FP S+ F
Sbjct: 62 PTRIFRETILLASLTDLSFRGNTFTWWNKRS-RAPVAKKLDRILVNDKWTTTFPSSLGLF 120
Query: 2204 LTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAW-NIKVQGTPMFIFV 2028
SDHS S+ S K +R+ N ++ +FL ++ W + V G+ M+
Sbjct: 121 GEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVS 180
Query: 2027 TKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYA 1848
KL +KK + + + +++ + A L Q L SP C E E R +
Sbjct: 181 VKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASP-CPSNAAIEAETQRKWR 239
Query: 1847 KKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIA 1668
A E S Q+SRV W++ GD N+ +FH R + N I L D G ++ Q++
Sbjct: 240 ILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLE 299
Query: 1667 AECIAYYTNLFGQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIILALSTIDSD 1488
C+ Y+ + G P QA L ++ S + +SL P ++++I A ++ +
Sbjct: 300 NHCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRN 359
Query: 1487 KAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNASTFND 1308
KA GP+GFS FF CW +IG + + + F S KLL + NAT + LIPKI NAS+ +D
Sbjct: 360 KASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSD 419
Query: 1307 YRPIACCNVIYKCISKILTIRLK 1239
+RPI+C N +YK ISK+LT RLK
Sbjct: 420 FRPISCLNTVYKVISKLLTDRLK 442
Score = 221 bits (563), Expect(3) = e-125
Identities = 113/326 (34%), Positives = 186/326 (57%)
Frame = -1
Query: 1221 VSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLD 1042
+S QSAF+ R +N++LA EL+ Y++ N A LK+DLRKA+D +RWD +++ L
Sbjct: 449 ISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALR 508
Query: 1041 KFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNAL 862
++P++F W+ C++ FS+++NG + G+ +G+RQG P+SPYLFVL M+VF+ L
Sbjct: 509 ALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGL 568
Query: 861 MLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVN 682
+ + G+ + HP+ ++HL FADD+++ G S + +L F+ +GL +N
Sbjct: 569 LQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMN 628
Query: 681 NRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARI 502
K+ ++ + + + S S+ A F+ +S +L+ ++ LI+ + AR
Sbjct: 629 TNKTQLYHAGLSQSESDSM-ASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARF 687
Query: 501 KSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKH 322
SW R LSFAGRV L ++S ++ FW S F+LP + + ++ FLWS
Sbjct: 688 NSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGI 747
Query: 321 PSVKWSFVCLPYKEGGLGIRCIEATN 244
V WS VCLP EGG+G+R +N
Sbjct: 748 AKVAWSQVCLPKAEGGIGLRRFAVSN 773
Score = 49.7 bits (117), Expect(3) = e-125
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 221 IWDIVINKDTIWVQWVQQNLI-KGKDFWLLKTLVDASRCWRRILDHREAASKFVLHLIGN 45
IW + N ++WV W +Q+ + K FW S W+ +L R A +F+ +GN
Sbjct: 781 IWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGN 840
Query: 44 GRGTKLWKDRWLP 6
GR W D W P
Sbjct: 841 GRDASFWFDNWTP 853
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 261 bits (666), Expect(4) = e-124
Identities = 129/329 (39%), Positives = 197/329 (59%)
Frame = -1
Query: 1221 VSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLD 1042
++P QSAFI R + +N++LA EL+++YH+ + + R ALKID+ KA+D ++W L+ L
Sbjct: 705 IAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLK 764
Query: 1041 KFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNAL 862
H+P+ FI+W+ +CI FS+ VNG G+ +RG+RQGC LSPYL+V+ M+V + +
Sbjct: 765 AIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCM 824
Query: 861 MLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVN 682
+ K S HPRC+N +THLCFADD++V G +S + + F+ + L+++
Sbjct: 825 LDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKIS 884
Query: 681 NRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARI 502
KS+IF++ + SI FE L+ R++ SD + L++ + ARI
Sbjct: 885 LEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARI 944
Query: 501 KSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKH 322
SW R LSFAGR+ L K +LSS+ FW S F LPK + + +F FLWSG +L K
Sbjct: 945 TSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKK 1004
Query: 321 PSVKWSFVCLPYKEGGLGIRCIEATNTAS 235
+ WS VC +EGGLG++ ++ N S
Sbjct: 1005 AKIAWSEVCKLKEEGGLGLKPLKEANEVS 1033
Score = 152 bits (384), Expect(4) = e-124
Identities = 122/451 (27%), Positives = 179/451 (39%), Gaps = 9/451 (1%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAG---DNNLPWCILGDFNAYLFSHDKEG--GAALT 2391
F +F+Y N + R +LW + N N W ILGDFN L D +
Sbjct: 339 FFVSFIYASNYVDERRELWEDLRNHYDLPMFRNKGWMILGDFNEILDGEDHSNFVNSPFI 398
Query: 2390 SANLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVT 2211
+ F V+ L Y G +TW NK++ + + KLDRVL+N W FP +
Sbjct: 399 PQGMRDFQDVVRYCSLADMSYHGPVFTWCNKRE-EGLVNKKLDRVLVNEVWTRKFPAVYS 457
Query: 2210 DFLTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWNIKVQ----GTP 2043
F GISDH SG +++ N +FL +V W+ + +
Sbjct: 458 IFEAGGISDHLRCRIKFASGNTQPKGPFKFNNVLTTLPEFLQIVKDFWDGTLALFHPTSA 517
Query: 2042 MFIFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREE 1863
MF F KL +K L + + N S +V A L
Sbjct: 518 MFRFSKKLKGLKPILKSLGRSTLHNLSVRVAEAYTSLY---------------------- 555
Query: 1862 VRDYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTS 1683
EE +Q+S++ W+ +GD N +FHNS+ R+A N I + G TS
Sbjct: 556 ---------LEEGYLQQKSKLHWLDVGDKNNKYFHNSVKARVAMNSIREIQCTDGRVCTS 606
Query: 1682 DQDIAAECIAYYTNLFGQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIILALS 1503
H +EEA
Sbjct: 607 -----------------------------------HDDIKEEA----------------- 614
Query: 1502 TIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNA 1323
K+PGP+G++ FFK W V+G D + ++S F L +N T+++LI K
Sbjct: 615 ----HKSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEV 670
Query: 1322 STFNDYRPIACCNVIYKCISKILTIRLKHVV 1230
S DYRPI+CCNV+YK +SK++ RLK ++
Sbjct: 671 SGMKDYRPISCCNVLYKIVSKLMANRLKEIL 701
Score = 59.3 bits (142), Expect(4) = e-124
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = -2
Query: 227 KHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVD-ASRCWRRILDHREAASKFVLHLI 51
K IW I+ +D++WV+WV ++LI+ + FW +K S WR+IL R+ A F +
Sbjct: 1036 KLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEV 1095
Query: 50 GNGRGTKLWKDRWLP 6
+G T W D W P
Sbjct: 1096 RSGTFTSFWHDHWCP 1110
Score = 46.6 bits (109), Expect(4) = e-124
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = -1
Query: 2823 NIRGLNDPLKQVEVSNLIRNN-----------NIKICGLVETLVQESNKDIIRNNILPSW 2677
N+ L + + E + +R N ++ GL+ET V E+ I + + W
Sbjct: 233 NVGALKNSAPETEKTGALRVNLPRSSKSSHKDSLTFGGLIETRVDENRASRIISKVFRDW 292
Query: 2676 MYSDNYSYHALGRIWLLWDPVSVKINFLFSSAQYI 2572
NY +H LGRIW++W +V++ ++ S Q I
Sbjct: 293 SSMTNYEHHRLGRIWVVWKN-TVRVTPVYKSGQLI 326
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 222 bits (566), Expect(3) = e-124
Identities = 112/331 (33%), Positives = 182/331 (54%)
Frame = -1
Query: 1227 ELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTT 1048
E+V+ QS FI R I DNI+LA EL+R Y R + + RC +K+D+RKAYD + W L T
Sbjct: 541 EVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETL 600
Query: 1047 LDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFN 868
L +F P RF+ W+ C++ +S++VNG + ++G+RQG P+SP+LF L M+ +
Sbjct: 601 LYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLS 660
Query: 867 ALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLE 688
+ + ++ HP+C+ +THL FADDLL+ + D S ++ FS+ +GL
Sbjct: 661 RCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLA 720
Query: 687 VNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIA 508
++ KS+I+ VD T+ + + + S +L+++ C L++ +
Sbjct: 721 ASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITN 780
Query: 507 RIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTH 328
R ++W + LS+AGR+ L K ILSSM +W F L KK + + + R FLW+G
Sbjct: 781 RAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEET 840
Query: 327 KHPSVKWSFVCLPYKEGGLGIRCIEATNTAS 235
K V W+ + P GG + ++ N A+
Sbjct: 841 KKAPVAWATIQRPKSRGGWNVINMKYWNRAA 871
Score = 201 bits (511), Expect(3) = e-124
Identities = 131/444 (29%), Positives = 223/444 (50%), Gaps = 7/444 (1%)
Frame = -2
Query: 2540 VYRYNSEELRDDLWYKISNFAGDNNLPWCILGDFNAYLFSHDKEGGAALTSANLYRFHAC 2361
VY ++ R LW + + P I+GDFNA S+D+ G +T A F
Sbjct: 106 VYGLHTIADRKSLWSGLLQCVQQQD-PMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQF 164
Query: 2360 VQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDFLTCGISDH 2181
+ S+L +Y+WSN R+ ++D+ +N+ WL + + +L GISDH
Sbjct: 165 LLQSNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDH 224
Query: 2180 SLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWNIKVQGTPMFIFVTKL*NVKKA 2001
S ++ ++ +GR K +++ N E+ +FL V AWN V G F N+K
Sbjct: 225 SPLLFNLMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWN-SVNGR--FKLQAIWLNLKAV 281
Query: 2000 LIAWRKKRFTNFSTQ-VGVAKAHLANVQKELQ--VSPFCVDTIDAEREEVRDYAKKARY- 1833
K+ TQ +G+A + N++ +LQ S D D + + + R+
Sbjct: 282 -----KRELKQMKTQKIGLAHEKVKNLRHQLQDLQSQDDFDHNDIMQTDAKSIMNDLRHW 336
Query: 1832 ---EESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIAAE 1662
E+S+ +Q+SR+ W+Q GD N+ F ++ R A NRI +L G + ++ E
Sbjct: 337 SHIEDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEE 396
Query: 1661 CIAYYTNLFGQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIILALSTIDSDKA 1482
+ +Y L G ++T + + +S + SL + + EI AL+ I +DKA
Sbjct: 397 ILEFYKKLLGTRASTLMGVDL-NTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKA 455
Query: 1481 PGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNASTFNDYR 1302
PG +GF+++FFK W I + ++ F ++++ +N +V+L+PK+ +A+ ++R
Sbjct: 456 PGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFR 515
Query: 1301 PIACCNVIYKCISKILTIRLKHVV 1230
PIACC VIYK ISK+LT R+K ++
Sbjct: 516 PIACCTVIYKIISKMLTNRMKGII 539
Score = 73.2 bits (178), Expect(3) = e-124
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = -1
Query: 2826 WNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQESNKDIIRNNILPSWMYSDNYSYHA 2647
WN+RG+NDP K E+ N + ++ I +C L+ET V+E N ++ + W + +NYS+ A
Sbjct: 6 WNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNYSHSA 65
Query: 2646 LGRIWLLWDPVSVKINFLFSSAQ 2578
RIW+ W P V + + Q
Sbjct: 66 RERIWIGWRPAWVNVTLTHTQEQ 88
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 236 bits (602), Expect(3) = e-120
Identities = 118/327 (36%), Positives = 187/327 (57%)
Frame = -1
Query: 1242 QACCQELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWD 1063
Q ++ QSAF+ RS+ +N++LA E++ Y+R N + R LK+DL+KA+D ++W+
Sbjct: 405 QGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWE 464
Query: 1062 ALLTTLDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLL 883
+ L IP+R+INW+ CIT P F+I VNG+ G+ +G+RQG PLSPYLFVL
Sbjct: 465 FVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLA 524
Query: 882 MDVFNALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSN 703
M+VF+ L+ + G+ HP+ + ++HL FADD+++ G S + TL F++
Sbjct: 525 MEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFAD 584
Query: 702 RTGLEVNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALI 523
+GL+VN KS +F + +D + ++ A F + +L +D L+
Sbjct: 585 WSGLKVNKDKSQLFQAGLDLSERIT-SAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLL 643
Query: 522 DHVIARIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSG 343
+ + AR++SW ++LSFAGR L ++ ++ FW S F+LPK + + ++ FLW+G
Sbjct: 644 EKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAG 703
Query: 342 IELTHKHPSVKWSFVCLPYKEGGLGIR 262
K V W CLP EGGLG R
Sbjct: 704 SIDGRKSSKVSWVDCCLPKSEGGLGFR 730
Score = 199 bits (505), Expect(3) = e-120
Identities = 130/413 (31%), Positives = 203/413 (49%), Gaps = 3/413 (0%)
Frame = -2
Query: 2453 ILGDFNAYLFSHDKEGGAALTSANLYR-FHACVQNSHLFVCPYVGCFYTWSNKQDVDARI 2277
+LGDFN L + +L R F +C+ L + G +TW NK + I
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRP-I 59
Query: 2276 TCKLDRVLINMAWLDCFPDSVTDFLTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEES 2097
KLDR+L N +W + +P S F SDH + + + + ++++N +
Sbjct: 60 AKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNE 119
Query: 2096 DFLGVVAAAW-NIKVQGTPMFIFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQ 1920
DFL VV W + V G+ M+ KL +KK + + + ++ + A L Q
Sbjct: 120 DFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQ 179
Query: 1919 KELQVSPFCVDTIDAEREEVRDYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIER 1740
+P V E E R + + EES Q+SRV W GD+NT +FH + R
Sbjct: 180 NLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSR 238
Query: 1739 IARNRILVLYDVAGTKLTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQ-IELQHKVSE 1563
+ N I L D G + S Q I C+ YY L G + PF + D + L ++ S+
Sbjct: 239 KSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIES-PFSMEQEDMNLLLTYRCSQ 297
Query: 1562 EEAISLTMPITNDEIILALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASA 1383
++ L T+DEI A ++ +K GP+G+S FF+ WS+IG + + + F S
Sbjct: 298 DQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSG 357
Query: 1382 KLLGEVNATLVSLIPKIPNASTFNDYRPIACCNVIYKCISKILTIRLKHVVKS 1224
+LL + NAT + LIPK NA T +++RPI+C N +YK ISK+LT RL+ ++ +
Sbjct: 358 QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSA 410
Score = 48.1 bits (113), Expect(3) = e-120
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 221 IWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVDASRCWRRILDHREAASKFVLHLIGNG 42
IW + ++W QW + + + FW + L W+ +L+ R A KF+ +GNG
Sbjct: 744 IWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNG 803
Query: 41 RGTKLWKDRW 12
W D W
Sbjct: 804 GTVSFWFDCW 813
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 236 bits (602), Expect(3) = e-120
Identities = 118/327 (36%), Positives = 187/327 (57%)
Frame = -1
Query: 1242 QACCQELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWD 1063
Q ++ QSAF+ RS+ +N++LA E++ Y+R N + R LK+DL+KA+D ++W+
Sbjct: 405 QGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWE 464
Query: 1062 ALLTTLDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLL 883
+ L IP+R+INW+ CIT P F+I VNG+ G+ +G+RQG PLSPYLFVL
Sbjct: 465 FVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLA 524
Query: 882 MDVFNALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSN 703
M+VF+ L+ + G+ HP+ + ++HL FADD+++ G S + TL F++
Sbjct: 525 MEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFAD 584
Query: 702 RTGLEVNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALI 523
+GL+VN KS +F + +D + ++ A F + +L +D L+
Sbjct: 585 WSGLKVNKDKSQLFQAGLDLSERIT-SAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLL 643
Query: 522 DHVIARIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSG 343
+ + AR++SW ++LSFAGR L ++ ++ FW S F+LPK + + ++ FLW+G
Sbjct: 644 EKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAG 703
Query: 342 IELTHKHPSVKWSFVCLPYKEGGLGIR 262
K V W CLP EGGLG R
Sbjct: 704 SIDGRKSSKVSWVDCCLPKSEGGLGFR 730
Score = 199 bits (505), Expect(3) = e-120
Identities = 130/413 (31%), Positives = 203/413 (49%), Gaps = 3/413 (0%)
Frame = -2
Query: 2453 ILGDFNAYLFSHDKEGGAALTSANLYR-FHACVQNSHLFVCPYVGCFYTWSNKQDVDARI 2277
+LGDFN L + +L R F +C+ L + G +TW NK + I
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRP-I 59
Query: 2276 TCKLDRVLINMAWLDCFPDSVTDFLTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEES 2097
KLDR+L N +W + +P S F SDH + + + + ++++N +
Sbjct: 60 AKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNE 119
Query: 2096 DFLGVVAAAW-NIKVQGTPMFIFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQ 1920
DFL VV W + V G+ M+ KL +KK + + + ++ + A L Q
Sbjct: 120 DFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQ 179
Query: 1919 KELQVSPFCVDTIDAEREEVRDYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIER 1740
+P V E E R + + EES Q+SRV W GD+NT +FH + R
Sbjct: 180 NLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSR 238
Query: 1739 IARNRILVLYDVAGTKLTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQ-IELQHKVSE 1563
+ N I L D G + S Q I C+ YY L G + PF + D + L ++ S+
Sbjct: 239 KSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIES-PFSMEQEDMNLLLTYRCSQ 297
Query: 1562 EEAISLTMPITNDEIILALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASA 1383
++ L T+DEI A ++ +K GP+G+S FF+ WS+IG + + + F S
Sbjct: 298 DQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSG 357
Query: 1382 KLLGEVNATLVSLIPKIPNASTFNDYRPIACCNVIYKCISKILTIRLKHVVKS 1224
+LL + NAT + LIPK NA T +++RPI+C N +YK ISK+LT RL+ ++ +
Sbjct: 358 QLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSA 410
Score = 48.1 bits (113), Expect(3) = e-120
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 221 IWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVDASRCWRRILDHREAASKFVLHLIGNG 42
IW + ++W QW + + + FW + L W+ +L+ R A KF+ +GNG
Sbjct: 744 IWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNG 803
Query: 41 RGTKLWKDRW 12
W D W
Sbjct: 804 GTVSFWFDCW 813
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 248 bits (633), Expect(2) = e-119
Identities = 127/334 (38%), Positives = 193/334 (57%)
Frame = -1
Query: 1242 QACCQELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWD 1063
Q +++SP QSAF+ R + +N++LA EL++ Y+R N R LK+DLRKA+D IRWD
Sbjct: 498 QCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWD 557
Query: 1062 ALLTTLDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLL 883
+++ L IP RF+ W++ CI+ P FS+ VNG+ G+ + RG+RQG PLSP+LFVL
Sbjct: 558 FIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLA 617
Query: 882 MDVFNALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSN 703
M+VF++L+ + Q G+ HP+ ++HL FADD++V G S +S L F+
Sbjct: 618 MEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAF 677
Query: 702 RTGLEVNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALI 523
+GL +N K+ ++++ +D + +I LR ++ L+
Sbjct: 678 WSGLVLNREKTHLYLAGLDRIEASTIARKLRI---------------------AEYGPLL 716
Query: 522 DHVIARIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSG 343
+ + R +SW + LSFAGRV L ++S ++ FW S F+LPK V + A+ FLWSG
Sbjct: 717 EKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSG 776
Query: 342 IELTHKHPSVKWSFVCLPYKEGGLGIRCIEATNT 241
K V WS VCLP +EGG+G+R NT
Sbjct: 777 NIDVKKGAKVAWSEVCLPKEEGGVGLRRFTVLNT 810
Score = 211 bits (536), Expect(2) = e-119
Identities = 145/455 (31%), Positives = 216/455 (47%), Gaps = 9/455 (1%)
Frame = -2
Query: 2576 TFLLGPLFVRTFVYRYNSEELRDDLWYKI---SNFAGDNNLPWCILGDFNAYLFSHDKEG 2406
T L V + VY N R +LW ++ S N PW +LGDFN L +
Sbjct: 46 TEFLDDSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQ 105
Query: 2405 GAALT-SANLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDC 2229
+L + + F C+ + L + G +TW NK + KLDR+L+N +W
Sbjct: 106 ATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKS-ATRPVAKKLDRILVNESWCSR 164
Query: 2228 FPDSVTDFLTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAW-NIKVQ 2052
FP + F SDH+ + + +R+YN + DF+ +V W +I V
Sbjct: 165 FPSAYAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVV 224
Query: 2051 GTPMFIFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAE 1872
G+ MF KL +K + + + F+N +V A +L ++ +S + E
Sbjct: 225 GSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAH-NLVLYRQNKTLSDPTIPNAALE 283
Query: 1871 REEVRDYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTK 1692
E R + + EES Q+SRV WM GD+NT +FH R A N I ++ D G K
Sbjct: 284 MEAQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVK 343
Query: 1691 LTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIIL 1512
+ + I CI Y++NL G P Q + L + S ++ L M + +I
Sbjct: 344 IDTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKS 403
Query: 1511 ALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKI 1332
A + S+K GP+GF FFK WSVIG + V F S+ LL + NAT + LIPKI
Sbjct: 404 AFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKI 463
Query: 1331 PNASTFNDYRPIACCN----VIYKCISKILTIRLK 1239
NAS ND+RPI+C + +YK I+++LT RL+
Sbjct: 464 TNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQ 498
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 238 bits (607), Expect(2) = e-118
Identities = 115/310 (37%), Positives = 183/310 (59%)
Frame = -1
Query: 1209 QSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLDKFHI 1030
QSAF+ R + +N++LA E++++YH+++ + RCALKID+ KA+D ++W L+ L+ +
Sbjct: 450 QSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNF 509
Query: 1029 PQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNALMLKQ 850
P F +W+++CIT FS+ VNG G R +RQGC LSPYLFV+ MDV + ++ K
Sbjct: 510 PPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKA 569
Query: 849 VQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVNNRKS 670
V + HP+C+ +THL FADDL++ G V+S + L F+ +GL+++ KS
Sbjct: 570 VGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKS 629
Query: 669 SIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARIKSWK 490
+++++ V A+ I F+ +S RL+ SDC+ LI+ + +I++W
Sbjct: 630 TMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWT 689
Query: 489 ERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKHPSVK 310
R LSFAGR+ L L S+ FW + F LP+ + ++ + FLWSG EL+ V
Sbjct: 690 SRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSGTELSSNKAKVS 749
Query: 309 WSFVCLPYKE 280
W +C P KE
Sbjct: 750 WEAICKPKKE 759
Score = 218 bits (554), Expect(2) = e-118
Identities = 142/449 (31%), Positives = 227/449 (50%), Gaps = 14/449 (3%)
Frame = -2
Query: 2519 ELRDDLWYKISNFAGD---NNLPWCILGDFNAYLF--SHDKEGGAALTSANLYRFHACVQ 2355
E R +LW + + + + PW I GDFN L H +T+ + F V
Sbjct: 2 EERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVN 61
Query: 2354 NSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDFLTCGISDHSL 2175
+ + Y G +TWSNK++ D I KLDRVL+N WL FP S + F G SDH
Sbjct: 62 HCSITDLAYHGPLFTWSNKRENDL-IAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLR 120
Query: 2174 MVTSVFSGRGTVTKA---YRYYNTWEEESDFLGVVAAAWN----IKVQGTPMFIFVTKL* 2016
++ G G V K +++ N E F+ V + WN I + + +F F KL
Sbjct: 121 CRINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLK 180
Query: 2015 NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYAKKAR 1836
+K L K+R N Q A L Q +P ++ E E + A
Sbjct: 181 GLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANP-SPSSMQEENEAYAKWDHIAV 239
Query: 1835 YEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIAAECI 1656
EE KQ+S++ W+ +GD N FH +++ R A+N I + G+ + ++ I E
Sbjct: 240 LEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAE 299
Query: 1655 AYYTNLFGQHSATPFDAQAWDQIE--LQHKVSEEEAISLTMPITNDEIILALSTIDSDKA 1482
++ F Q F+ A ++++ L ++ S+ + LT ++ +EI + ++ +DK+
Sbjct: 300 HHFRE-FLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKS 358
Query: 1481 PGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNASTFNDYR 1302
PGP+G+++ F+K W++IG +FI ++S FA L +N+T+++LIPK A DYR
Sbjct: 359 PGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYR 418
Query: 1301 PIACCNVIYKCISKILTIRLKHVVKSWLV 1215
PI+CCNV+YK ISKI+ RLK V+ ++V
Sbjct: 419 PISCCNVLYKVISKIIANRLKLVLPKFIV 447
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 261 bits (666), Expect(4) = e-117
Identities = 129/328 (39%), Positives = 198/328 (60%)
Frame = -1
Query: 1227 ELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTT 1048
E ++P QSAFIS R + +N++LA EL+++YH++ + RCA+KIDL KA+D ++W LL T
Sbjct: 822 EFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNT 881
Query: 1047 LDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFN 868
L IP++FI+W+++CI+ FS+ VNG +RQGC LSPYLFV+ M+V +
Sbjct: 882 LAALDIPEKFIHWINLCISTASFSVQVNG-----------LRQGCSLSPYLFVICMNVLS 930
Query: 867 ALMLKQVQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLE 688
A++ K + HPRC+N +THLCFADD++V G S + + F+ +GL
Sbjct: 931 AMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLN 990
Query: 687 VNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIA 508
++ KS++F++S+ + T SI A F+ ++ R++ +DC+ L++ + +
Sbjct: 991 ISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRS 1050
Query: 507 RIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTH 328
RI SWK R LS+AGR+ L ++SS+ FW S F LP+ + + I FLWSG +L
Sbjct: 1051 RISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNP 1110
Query: 327 KHPSVKWSFVCLPYKEGGLGIRCIEATN 244
V W VC P EGGLG+R + N
Sbjct: 1111 HKAKVAWHDVCKPKSEGGLGLRSLVDAN 1138
Score = 153 bits (386), Expect(4) = e-117
Identities = 126/460 (27%), Positives = 204/460 (44%), Gaps = 14/460 (3%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLW---YKISNFAGDNNLPWCILGDFNAYLF--SHDKEGGAALT 2391
F+ +F+Y N E R LW + + N N PW + GDFN L H + +
Sbjct: 404 FICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMV 463
Query: 2390 SANLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVT 2211
+ + F V+ L G +TW NK++ + I KLDRVL+N + +P S
Sbjct: 464 TPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRN-EGLICKKLDRVLLNPEYNSAYPHSYC 522
Query: 2210 DFLTCGISDHSLMVTSVFSGRGTVTKA---YRYYNTWEEESDFLGVVAAAWNIKVQGTP- 2043
+ G SDH + F R + K +++ N +F+ V W + P
Sbjct: 523 IMDSGGCSDH---LRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDFWKNTTELFPS 579
Query: 2042 ---MFIFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAE 1872
+F F KL +K L + ++ + + A L Q + + D +D
Sbjct: 580 TSTLFRFSKKLKELKPILKDLSRNNLSDLTRRATYAYEELCRCQTKSLTTLNPHDIVD-- 637
Query: 1871 REEVRDYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTK 1692
ES+ + RW + ER N I + D GT+
Sbjct: 638 --------------ESLAFE----RWEK--------------ERHLLNAIHEVMDPQGTR 665
Query: 1691 LTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQIE--LQHKVSEEEAISLTMPITNDEI 1518
+ DI E + ++++L + F + D+++ LQ++ S E L IT E+
Sbjct: 666 PPNQDDIKIEAVRFFSDLLSSQPSD-FTGISVDELKGILQYRYSLHEQNLLVAEITEAEV 724
Query: 1517 ILALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIP 1338
+ +I +K+PGP+G++ FF+ WSVIG + +KS F L +N+T+++LIP
Sbjct: 725 MKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIP 784
Query: 1337 KIPNASTFNDYRPIACCNVIYKCISKILTIRLKHVVKSWL 1218
K A DYRPI+CCNV+YK ISK+L RLK ++ ++
Sbjct: 785 KRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFI 824
Score = 45.4 bits (106), Expect(4) = e-117
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = -1
Query: 2742 LVETLVQESNKDIIRNNILPSWMYSDNYSYHALGRIWLLWDPVSVKINFLFSSAQYI 2572
++ET V ES +I + W NY ++ LGRIW++W SV++ +F S+Q I
Sbjct: 336 VLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSS-SVQLQVIFKSSQMI 391
Score = 35.4 bits (80), Expect(4) = e-117
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 230 FKHIWDIVINKDTIWVQWVQQNLIK 156
FK IW +V K ++WV W+Q NLI+
Sbjct: 1143 FKLIWRLVSAKHSLWVNWIQNNLIR 1167
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 253 bits (647), Expect(3) = e-111
Identities = 125/325 (38%), Positives = 189/325 (58%)
Frame = -1
Query: 1209 QSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLDKFHI 1030
QSAF+ R + +N++LA EL+++YH+++ + RCA+KID+ KA+D ++W L L +
Sbjct: 283 QSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNF 342
Query: 1029 PQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNALMLKQ 850
P FI+W+S+C++ FSI VNG GY RG+RQGC LSPYLFV+ MDV + ++ K
Sbjct: 343 PGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKA 402
Query: 849 VQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVNNRKS 670
+ HPRCK +THLCFADDL++ G ++S + L F+ + GL++ K+
Sbjct: 403 AGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKT 462
Query: 669 SIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARIKSWK 490
+++++ V + + + F ++ RL+ SD LID + RI W
Sbjct: 463 TLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWT 522
Query: 489 ERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKHPSVK 310
R LSFAGR+ L +L S+ FW + F LP++ +N +N I LWSG EL K V
Sbjct: 523 SRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVS 582
Query: 309 WSFVCLPYKEGGLGIRCIEATNTAS 235
W +C P KEGGLG++ + N S
Sbjct: 583 WDEICKPKKEGGLGLQSLREANKVS 607
Score = 137 bits (344), Expect(3) = e-111
Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 4/223 (1%)
Frame = -2
Query: 1871 REEVRDYAKK--ARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAG 1698
R+ D+ + A +S K+ S +GD N FH +I R A N I + G
Sbjct: 59 RQRFMDFVDRVLALQGDSPNKKFSLKCQTDVGDRNNKTFHRAITTREAVNSIREIVTRDG 118
Query: 1697 TKLTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQIE--LQHKVSEEEAISLTMPITND 1524
+TS QDI E + Y+ + F Q ++ +++E L + SE++ LT +T +
Sbjct: 119 LVVTSQQDIQTEAVNYFQD-FLQTIPADYEGMCVEELENLLPFRCSEDDHRLLTRVVTGE 177
Query: 1523 EIILALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSL 1344
EI + ++ DK+PGP+G++S F+K W +IG + I ++S FA L VN+T+++L
Sbjct: 178 EIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILAL 237
Query: 1343 IPKIPNASTFNDYRPIACCNVIYKCISKILTIRLKHVVKSWLV 1215
IPK A DYRPI+CCNV+YK ISKIL RLK ++ ++V
Sbjct: 238 IPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIV 280
Score = 65.1 bits (157), Expect(3) = e-111
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = -2
Query: 233 NFKHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKT-LVDASRCWRRILDHREAASKFVLH 57
+ K IW ++ +D++WV+W + NL+K + FW + T S WRR+L HRE A F
Sbjct: 608 SLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKI 667
Query: 56 LIGNGRGTKLWKDRW 12
+ NG T W D W
Sbjct: 668 EVNNGVNTSFWFDNW 682
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 244 bits (624), Expect(3) = e-110
Identities = 119/325 (36%), Positives = 189/325 (58%)
Frame = -1
Query: 1209 QSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLDKFHI 1030
QSAF+ R + +N++LA EL+++YH+ + RCA+KID+ KA+D ++W LL TL+ +
Sbjct: 859 QSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNF 918
Query: 1029 PQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNALMLKQ 850
P+ F +W+ +CI+ FS+ VNG G+ RG+RQGC LSPYLFV+ M+V + ++ +
Sbjct: 919 PETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEA 978
Query: 849 VQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVNNRKS 670
HP+C+ +THLCFADDL+V + G S + + F+ R+GL+++ KS
Sbjct: 979 AVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKS 1038
Query: 669 SIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARIKSWK 490
+I+++ V A+ + + F L+ +++ +D LI+ V +I SW
Sbjct: 1039 TIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWT 1098
Query: 489 ERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKHPSVK 310
RSLS+AGR+ L ++ S+ FW S + LP + + + FLWSG L K +
Sbjct: 1099 ARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIA 1158
Query: 309 WSFVCLPYKEGGLGIRCIEATNTAS 235
WS +C P KEGGLGI+ + N S
Sbjct: 1159 WSSICQPKKEGGLGIKSLAEANKVS 1183
Score = 160 bits (406), Expect(3) = e-110
Identities = 132/462 (28%), Positives = 199/462 (43%), Gaps = 8/462 (1%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAGD---NNLPWCILGDFNAYLFSHDKEGGAALTSA 2385
F +F+Y N E R LW I + N PW + GDFN L EGG
Sbjct: 463 FFCSFIYASNFVEERRILWEDIRSHHDSPLIRNKPWILCGDFNEIL-----EGGE----- 512
Query: 2384 NLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDF 2205
H+ NS PY P + DF
Sbjct: 513 -----HSNYDNS-----PYT---------------------------------PPGMRDF 529
Query: 2204 LTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWN----IKVQGTPMF 2037
G LM+ + +G K +++ N + FL VV + W + V + ++
Sbjct: 530 QEIG----RLMLEAAATGG---RKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALY 582
Query: 2036 IFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVR 1857
F KL +K L K++ + + A L Q +P +TI E +
Sbjct: 583 RFSKKLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANP-SQETIAEELKAYT 641
Query: 1856 DYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQ 1677
D+ + EE KQ+S++ WM +GD N +FH + R RN I + L + +
Sbjct: 642 DWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSE 701
Query: 1676 DIAAECIAYYTNLFGQHSATPFDAQAWDQIELQ-HKVSEEEAISLTMPITNDEIILALST 1500
+I E ++ + S D L ++ S + LT +T +EI L
Sbjct: 702 EIKGEAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFA 761
Query: 1499 IDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNAS 1320
+ ++K+PGP+G++S FFK WS+ G DFI ++S F L +NAT+++LIPK A
Sbjct: 762 MPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAI 821
Query: 1319 TFNDYRPIACCNVIYKCISKILTIRLKHVVKSWLVLANPPSF 1194
DYRPI+CCNV+YK ISKIL RLK ++ S+ +L N +F
Sbjct: 822 EMKDYRPISCCNVLYKVISKILANRLKLLLPSF-ILQNQSAF 862
Score = 46.2 bits (108), Expect(3) = e-110
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 227 KHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVD-ASRCWRRILDHREAASKFVLHLI 51
K IW ++ + ++WV W+ +I+ FW S W+++L +RE A +
Sbjct: 1186 KLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEV 1245
Query: 50 GNGRGTKLWKDRW 12
NG T W D W
Sbjct: 1246 RNGSSTSFWYDHW 1258
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 259 bits (663), Expect(3) = e-110
Identities = 130/330 (39%), Positives = 192/330 (58%), Gaps = 1/330 (0%)
Frame = -1
Query: 1224 LVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTL 1045
+V P QS FI R I DNI+LA E++ +YH+ +G RC +D+ KA D + WD ++ TL
Sbjct: 378 IVGPSQSTFIPGRRIGDNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATL 437
Query: 1044 DKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNA 865
F+IP I W+ CI++ KFS+ VNG G+ +RG+RQG PLSPYLFV+ M+V +
Sbjct: 438 QAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSL 497
Query: 864 LMLKQVQLG-FYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLE 688
+ +++ + H RC ++HLCFADDLL+ GD S R+L + F + + L+
Sbjct: 498 CIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLK 557
Query: 687 VNNRKSSIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIA 508
N +S IF++ VD +S S+ + F ++S+L DC L+D +
Sbjct: 558 ANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIET 617
Query: 507 RIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTH 328
RIKSW+ + LSFAGR+ L + +LSS+ ++W S +LPKK + + R FLW+G
Sbjct: 618 RIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGR 677
Query: 327 KHPSVKWSFVCLPYKEGGLGIRCIEATNTA 238
V WS +CLP EGGLGI+ + N A
Sbjct: 678 AATKVAWSEICLPKCEGGLGIKDLHCWNKA 707
Score = 123 bits (308), Expect(3) = e-110
Identities = 102/406 (25%), Positives = 160/406 (39%), Gaps = 1/406 (0%)
Frame = -2
Query: 2453 ILGDFNAYLFSHDKEGGAALTSANLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARIT 2274
++GDFN + GG + + + F++C+ NS L Y
Sbjct: 95 VIGDFNVTRRCEETIGGNSRFTNAMDEFNSCLHNSKLDDLNY------------------ 136
Query: 2273 CKLDRVLINMAWLDCFPDSVTDFLTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESD 2094
SV FL GISDH+ MV V ++++N + D
Sbjct: 137 ------------------SVLSFLPPGISDHAAMVVKVGLPFRIRKAPFKFFNFLADRED 178
Query: 2093 FLGVVAAAWNIKVQGTPMFIFVTKL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKE 1914
F+ +V+A W V G+ F WRK + N K
Sbjct: 179 FIPIVSAVWATNVWGSKQFQ-------------VWRKLKLVK-------------NQFKL 212
Query: 1913 LQVSPFCVDTIDAEREEVRDYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIA 1734
L + E + K++SRV+W++ GD N+ FF ++ +
Sbjct: 213 LNCNVV----------------------EKLLKKKSRVQWLKKGDKNSTFFFKTMTKHRN 250
Query: 1733 RNRILVLYDVAGTKLTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQIELQHKVSEEEA 1554
RNRI + G L A
Sbjct: 251 RNRIATINRSDGPDL--------------------------------------------A 266
Query: 1553 ISLTMPITNDEIILALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKE-VKSCFASAKL 1377
SL T+D+I +++ +K+PGP+GF+ FF+ W VIG + + VK F+ L
Sbjct: 267 KSLCNEFTHDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSL 326
Query: 1376 LGEVNATLVSLIPKIPNASTFNDYRPIACCNVIYKCISKILTIRLK 1239
L E+N+T+++L+PK+ N +T +D+RPI+CCN YK I+K+L RLK
Sbjct: 327 LMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLK 372
Score = 68.9 bits (167), Expect(3) = e-110
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = -2
Query: 224 HIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVDASRCWRRILDHREAASKFVLHLIGN 45
HIW++V + W WV+ L+KG FW S WR++L RE F +++IG+
Sbjct: 712 HIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGD 771
Query: 44 GRGTKLWKDRWLP 6
GR T LW D W P
Sbjct: 772 GRATSLWFDNWHP 784
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 194 bits (494), Expect(4) = e-108
Identities = 130/439 (29%), Positives = 197/439 (44%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAGDNNLPWCILGDFNAYLFSHDKEGGAALTSANLY 2376
FV F+Y +E + W ++ + + P+ ILGDFN DK GGA +S+ Y
Sbjct: 105 FVAIFIYAPAQKEFKSSFWDELIAYVSSLSFPFIILGDFNEINSPSDKLGGAPFSSSRAY 164
Query: 2375 RFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDFLTC 2196
+ G +TW K+D I +LDR + + +WL FP +
Sbjct: 165 YMQNLFSQVDCTEISFTGQIFTWRKKKDGPNNIHERLDRGVASTSWLMLFPHAFLKHHIF 224
Query: 2195 GISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWNIKVQGTPMFIFVTKL* 2016
SDH + + + +R+ W D+ +V W K G+ MF FV K
Sbjct: 225 TSSDHCQISLEYLANNKSKAPPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCK 284
Query: 2015 NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYAKKAR 1836
VK W K +F N Q+ L +Q+ L + + + K
Sbjct: 285 LVKINSKEWNKTQFGNIFRQLRQVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLE 344
Query: 1835 YEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIAAECI 1656
Y + KQ+ + +M LGD N+ F+H R RN+I +T I E
Sbjct: 345 YNTTYWKQKCKSDFMVLGDTNSKFYHTHASIRKYRNQIKEFIPDNAQPITQPDLIEKEIT 404
Query: 1655 AYYTNLFGQHSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIILALSTIDSDKAPG 1476
+ F + A F+ Q D L VSE + LT ++ +EI A+ + DK+PG
Sbjct: 405 LAFKKRFISNPACKFN-QNVDFNLLSPIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPG 463
Query: 1475 PNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNASTFNDYRPI 1296
P+GF +FF+ W++IG + V++ F S +L EVN T ++LIPK+ N +RPI
Sbjct: 464 PDGFPPYFFQKYWTLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPI 523
Query: 1295 ACCNVIYKCISKILTIRLK 1239
+ C+ IYK ISKI+T RLK
Sbjct: 524 SLCSTIYKVISKIITNRLK 542
Score = 174 bits (442), Expect(4) = e-108
Identities = 107/337 (31%), Positives = 164/337 (48%), Gaps = 7/337 (2%)
Frame = -1
Query: 1227 ELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARR-CALKIDLRKAYDCIRWDALLT 1051
+++ P Q AFI R IQDNI++AHE+ ++ G A+K+D+ KAYD + W + T
Sbjct: 547 KIIHPLQGAFIPERLIQDNILIAHEVFHSFKNKTGRGGWIAIKLDMEKAYDRLEWKYIYT 606
Query: 1050 TLDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVF 871
T+DK +I W+ CI++ FS++VNG RGIRQG PLSPYLF+L ++
Sbjct: 607 TMDKMGFSPIWIEWIRSCISSASFSVLVNGIPGERFFPSRGIRQGDPLSPYLFILCAELL 666
Query: 870 NALMLKQVQ-----LGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFS 706
K +G R + P +T FADD ++ K S + L +
Sbjct: 667 AREFSKACHEPGKLIGVPIGRTRTRIPFLT---FADDTMIFAKATEASCHKIRQILDKYC 723
Query: 705 NRTGLEVNNRKSSIFIS-SVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVA 529
+G VN KS+ S +V ++ ++L + ++SR++
Sbjct: 724 LMSGQLVNYHKSAFQCSPNVRDIDKVNFASILGMQESSELGDYLGCPIINSRVTKETFAG 783
Query: 528 LIDHVIARIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLW 349
+I + ++ WK SLS AGR +L + L+S F F LPKK + TL+ +RNF W
Sbjct: 784 VISKTVQQLPKWKANSLSQAGRTVLIQSNLASKASFQMQSFTLPKKVLTTLDTTYRNFFW 843
Query: 348 SGIELTHKHPSVKWSFVCLPYKEGGLGIRCIEATNTA 238
+ + W+ +C P GG+G R E TN A
Sbjct: 844 NKDPAAKSANFIGWNKICQPKSVGGVGFRKAEVTNIA 880
Score = 60.5 bits (145), Expect(4) = e-108
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = -2
Query: 227 KHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVDASRCWRRILDHREAASKFVLHLIG 48
K +W I+++KD IWV+ V Q +K ++ + K +AS W+ +L HR SK + LIG
Sbjct: 884 KLLWKIMVSKDNIWVKLVTQKYLKEQNLLVCKIPSNASWQWKNLLRHRNFFSKGLRWLIG 943
Query: 47 NGRGTKLWKDRWLPQ 3
+G+ W D W+ Q
Sbjct: 944 DGQDISFWTDNWIFQ 958
Score = 36.6 bits (83), Expect(4) = e-108
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Frame = -1
Query: 2838 NIGCWNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQE-------SNKDIIRNNILPS 2680
+I WN+RG E S+ +NNNIKI L ET Q S + ++ +P+
Sbjct: 2 SIAFWNVRGGCRKNVMEECSDFCKNNNIKILMLCETKSQSPPSQLAVSAAGFLHHDSIPA 61
Query: 2679 WMYSDNYSYHALGRIWLLW-----DPVSVKINFLFSSAQYI 2572
YS G +WL W +P S+ + ++ S ++I
Sbjct: 62 MGYS--------GGLWLFWRDCILNPFSLVV--IYKSVRFI 92
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 251 bits (640), Expect(3) = e-102
Identities = 120/325 (36%), Positives = 190/325 (58%)
Frame = -1
Query: 1209 QSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLDKFHI 1030
QSAF+ R + +N++LA EL+++YH+++ + RCA+KID+ KA+D ++W L TL +
Sbjct: 209 QSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNF 268
Query: 1029 PQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNALMLKQ 850
FI+W+++CIT FS+ VNG GY + KRG+RQGC LSPYLFV+ MDV + ++ K
Sbjct: 269 SPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKA 328
Query: 849 VQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVNNRKS 670
+ + HP+C+ +THL FADDL+V G +S + F R+GL ++ KS
Sbjct: 329 AGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKS 388
Query: 669 SIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARIKSWK 490
+++++ V I A F+ ++ RL+ +D L++ + RI +W
Sbjct: 389 TLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWT 448
Query: 489 ERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKHPSVK 310
R SFAGR L K +L S+ FW + F LP++ + ++ + +FLWSG E++ +
Sbjct: 449 FRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKIS 508
Query: 309 WSFVCLPYKEGGLGIRCIEATNTAS 235
W VC P EGGLG+R ++ N S
Sbjct: 509 WDIVCKPKAEGGLGLRNLKEANDVS 533
Score = 110 bits (276), Expect(3) = e-102
Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 2/177 (1%)
Frame = -2
Query: 1763 FHNSIIERIARNRILVLYDVAGTKLTSDQDIAAECIAYYTNLFGQHSATPFDAQAWDQIE 1584
FH ++IER +N I +Y G + D DI E ++ F Q F +++
Sbjct: 24 FHRAVIERETKNMIKEIYCTDGRVVQGD-DIMVEAEKFFKE-FLQLIPEDFVGVEVRELQ 81
Query: 1583 --LQHKVSEEEAISLTMPITNDEIILALSTIDSDKAPGPNGFSSHFFKCCWSVIGVDFIK 1410
LQ + + + LT ++++EI L ++ DK+PGP+G++S F+K W +IG +F
Sbjct: 82 DLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTL 141
Query: 1409 EVKSCFASAKLLGEVNATLVSLIPKIPNASTFNDYRPIACCNVIYKCISKILTIRLK 1239
V+S F L +N+ +++LIPK A DYRPI+CCNV+YK ISKI+ RLK
Sbjct: 142 PVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLK 198
Score = 61.2 bits (147), Expect(3) = e-102
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 227 KHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVD-ASRCWRRILDHREAASKFVLHLI 51
K +W I+ N +++W +WV + LI+ K W LK S WR+IL R+ A F +
Sbjct: 536 KLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEV 595
Query: 50 GNGRGTKLWKDRW 12
GNG W D W
Sbjct: 596 GNGESASFWYDHW 608
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 239 bits (610), Expect(4) = e-100
Identities = 116/325 (35%), Positives = 190/325 (58%)
Frame = -1
Query: 1209 QSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWDALLTTLDKFHI 1030
QSAF+ R + +N++LA EL+++YH+++ + RCA+KID+ KA+D ++W LL TL+
Sbjct: 704 QSAFVRERLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKF 763
Query: 1029 PQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLLMDVFNALMLKQ 850
P++F +W+ +CI+ FS+ VN G+ KRG+RQGC LSPYLFV+ M+V + ++
Sbjct: 764 PEKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVA 823
Query: 849 VQLGFYSLHPRCKNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFSNRTGLEVNNRKS 670
HP+CK +THLCFADDL+V + G +S + + F+ ++GL ++ KS
Sbjct: 824 AVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKS 883
Query: 669 SIFISSVDATTSLSIQAMLRFEXXXXXXXXXXXXXLSSRLSHSDCVALIDHVIARIKSWK 490
+++++ V +I + F L+ +++ +D L+D V ++I SW
Sbjct: 884 TLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWT 943
Query: 489 ERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRNFLWSGIELTHKHPSVK 310
RSLS+AGR+ L ++ S+ FW S + LP + + + FLWSG EL K +
Sbjct: 944 ARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKIT 1003
Query: 309 WSFVCLPYKEGGLGIRCIEATNTAS 235
W+ +C +EGGLGI+ + N S
Sbjct: 1004 WTSLCKLKQEGGLGIKSLLEANKVS 1028
Score = 115 bits (288), Expect(4) = e-100
Identities = 123/467 (26%), Positives = 192/467 (41%), Gaps = 9/467 (1%)
Frame = -2
Query: 2555 FVRTFVYRYNSEELRDDLWYKISNFAGD---NNLPWCILGDFNAYL--FSHDKEGGAALT 2391
F +F+Y N E R LW I N N PW + GDFN L H + T
Sbjct: 348 FFCSFIYASNFVEERKILWEDIRNHHDSPLFRNKPWMLCGDFNEILDGSEHSNYDTSPFT 407
Query: 2390 SANLYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVT 2211
+ F V+ S L Y G +TW NK++ + I KLD+VL+N +W FP S +
Sbjct: 408 PLGMRDFQEVVRYSSLTDLGYHGPRFTWCNKRE-NGLICKKLDKVLVNDSWCITFPHSYS 466
Query: 2210 DFLTCGISDHSLMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWNIKVQGTPMFIF 2031
F G SDH+ RG + + AAA + G F F
Sbjct: 467 VFEAGGCSDHT---------RGRIM-----------------LEAAA----IGGRRPFKF 496
Query: 2030 VTKL*NV--KKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVR 1857
V L ++ K +L A + K L ++ K L+ +++
Sbjct: 497 VNVLTSIPQKPSLRA--------------LGKEKLGDLPKHLEEGYM-------KQKSKL 535
Query: 1856 DYAKKARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQ 1677
+ K S + ++VR MQ NSI E N ++ L + +
Sbjct: 536 HWMKVGDRNNSYFHKAAQVRRMQ----------NSIREIQGPNGVV---------LQTSE 576
Query: 1676 DIAAECIAYYTNLFGQHSATPFDAQAWDQIE--LQHKVSEEEAISLTMPITNDEIILALS 1503
+I E ++ F H + F ++++ + + S + LT +T++EI L
Sbjct: 577 EIKGEAERFFQE-FLNHQPSDFQGMTVEELQNLMSFRCSATDQDMLTREVTSEEIQKVLF 635
Query: 1502 TIDSDKAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNA 1323
+ S+K+PGP+G++ +NAT+++LIPK A
Sbjct: 636 AMPSNKSPGPDGYT------------------------------RLNATILALIPKKDEA 665
Query: 1322 STFNDYRPIACCNVIYKCISKILTIRLKHVVKSWLVLANPPSFREGL 1182
+ DYRPI+CCNVIYK ISKI+ RLK ++ ++++ RE L
Sbjct: 666 TLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERL 712
Score = 48.5 bits (114), Expect(4) = e-100
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 227 KHIWDIVINKDTIWVQWVQQNLIKGKDFWLLKTLVD-ASRCWRRILDHREAASKFVLHLI 51
K IW +V + ++WV WV +I+ FW S W+++L++R+ A I
Sbjct: 1031 KLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEI 1090
Query: 50 GNGRGTKLWKDRW 12
+G T W D W
Sbjct: 1091 KSGSSTSFWYDNW 1103
Score = 36.2 bits (82), Expect(4) = e-100
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 2679 WMYSDNYSYHALGRIWLLWDPVSVKINFLFSSAQYI 2572
W NY H LGRIW++W +V+I +F S+Q I
Sbjct: 301 WSILTNYESHRLGRIWVVWS-ANVRITPVFKSSQMI 335
>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 196 bits (497), Expect(4) = e-100
Identities = 136/448 (30%), Positives = 209/448 (46%), Gaps = 4/448 (0%)
Frame = -2
Query: 2555 FVRTFVYRYNSEEL--RDDLWYKISNFAGDNNLPWCILGDFNAYLFSHDKEGGAALTSAN 2382
F T + YN E+ R ++W +I F N LP ++GDFN L ++ G + +
Sbjct: 103 FECTLITVYNPCEIAARSEVWKQIIEFQNSNPLPCLLVGDFNEVLRPSER-GSLSFSHNG 161
Query: 2381 LYRFHACVQNSHLFVCPYVGCFYTWSNKQDVDARITCKLDRVLINMAWLDCFPDSVTDFL 2202
+ F + VQ L P YTW A LDR+L++ W+ P+ L
Sbjct: 162 INDFKSFVQELKLLEIPSSSRAYTWYR-----ANSKSLLDRLLVSPEWVSHCPNIKVSIL 216
Query: 2201 TCGISDHS-LMVTSVFSGRGTVTKAYRYYNTWEEESDFLGVVAAAWNIKVQGTPMFIFVT 2025
G+SDH L+V S G K +R+ N W + + +V A+W+ +P V
Sbjct: 217 QRGLSDHCPLLVHSHIQEWGP--KPFRFNNCWLTDPKCMKIVEASWS----SSPKISVVE 270
Query: 2024 KL*NVKKALIAWRKKRFTNFSTQVGVAKAHLANVQKELQVSPFCVDTIDAEREEVRDYAK 1845
KL KK L W F + + + +AN KE + ++ RE D K
Sbjct: 271 KLKETKKRLKEWNLNEFGSIDANIRKLEDCIANFDKEADERELDKEELEKRREAQADLWK 330
Query: 1844 KARYEESMKKQQSRVRWMQLGDNNTPFFHNSIIERIARNRILVLYDVAGTKLTSDQDIAA 1665
+ +E Q+SR+ W++ GD NT FFH +I R ++ + G I
Sbjct: 331 WMKRKEIYWAQRSRITWLKAGDKNTKFFH-AIASNKKRKNMMACIETDGQSTNDPSQIKK 389
Query: 1664 ECIAYYTNLFGQ-HSATPFDAQAWDQIELQHKVSEEEAISLTMPITNDEIILALSTIDSD 1488
E A++ +F + H P + + L+ ++S+ +A SL P T +EI A+S+ SD
Sbjct: 390 EARAFFKKIFKEDHVKRP----TLENLHLK-RLSQNQANSLITPFTTEEIDTAVSSCASD 444
Query: 1487 KAPGPNGFSSHFFKCCWSVIGVDFIKEVKSCFASAKLLGEVNATLVSLIPKIPNASTFND 1308
KAPGP+GF+ F K W +I D V + + L N ++LIPKI N S+ D
Sbjct: 445 KAPGPDGFNFKFVKSAWDIIKTDIYGIVNDFWETGCLPQGCNTAYIALIPKIDNPSSLKD 504
Query: 1307 YRPIACCNVIYKCISKILTIRLKHVVKS 1224
YRPI+ IYK ++K+L RL+ V+ S
Sbjct: 505 YRPISMVGFIYKIVAKLLAKRLQSVISS 532
Score = 181 bits (460), Expect(4) = e-100
Identities = 112/343 (32%), Positives = 178/343 (51%), Gaps = 5/343 (1%)
Frame = -1
Query: 1242 QACCQELVSPCQSAFISRRSIQDNIMLAHELLRNYHRNNGARRCALKIDLRKAYDCIRWD 1063
Q+ L+SP QS+++ R I D ++A E++ + + N LK+D KAYD + W+
Sbjct: 527 QSVISSLISPLQSSYVKGRQILDGALVASEIIESCKKRN-IEAILLKLDFHKAYDSVSWN 585
Query: 1062 ALLTTLDKFHIPQRFINWVSMCITAPKFSIMVNGSAYGYIEGKRGIRQGCPLSPYLFVLL 883
L TLD+ + P ++ W+ C+T+ SI+VNGS + RG+RQG PLSP+LFVL+
Sbjct: 586 FLQWTLDQMNFPVKWCEWIKTCVTSASASILVNGSPTPPFKLHRGLRQGDPLSPFLFVLV 645
Query: 882 MDVFNALMLKQVQLGFYSLHPRC-KNPIVTHLCFADDLLVCMKGDVQSARSLSSTLTTFS 706
+V + ++ K L + P C + +THL +ADD L+ + + S +++ TL F
Sbjct: 646 GEVLSQMISKATSLQLWRGIPACSRGSEITHLQYADDTLMFCEANTNSLKNIQKTLIIFQ 705
Query: 705 NRTGLEVNNRKSSIFISSVDATTSLSIQA----MLRFEXXXXXXXXXXXXXLSSRLSHSD 538
+GL+VN KSS+ ++ T+S +A M + +R+ D
Sbjct: 706 LVSGLQVNFHKSSLM--GLNVTSSWIQEAANSLMCKIGTIPFSYLGLPIGDNPARIRTWD 763
Query: 537 CVALIDHVIARIKSWKERSLSFAGRVLLNKVILSSMLIFWTSCFVLPKKTVNTLNAIFRN 358
+ID + ++ SWK + LS GR+ L K LS++ +++ S F +PK + +N + R
Sbjct: 764 --PIIDKLEKKLASWKGKLLSLGGRLTLIKASLSNLPLYYMSLFPVPKGVIEKINKLMRA 821
Query: 357 FLWSGIELTHKHPSVKWSFVCLPYKEGGLGIRCIEATNTASKF 229
FLW G V WS V P GGLGI I N + F
Sbjct: 822 FLWCGDFGKRPFSMVSWSIVQQPKTSGGLGIGNILHKNLSLLF 864
Score = 36.2 bits (82), Expect(4) = e-100
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = -1
Query: 2844 MNNIGCWNIRGLNDPLKQVEVSNLIRNNNIKICGLVETLVQESNKDIIR-----NNILPS 2680
M I WNIRGLN +K+ + LI NN + ET ++ N ++R N I
Sbjct: 1 MKPILSWNIRGLNARMKRASLRKLIAINNPGCVFVQETKMENINARLMRTCWKSNEI--E 58
Query: 2679 WMYSDNYSYHALGRIWLLWD 2620
W++S S + G I +WD
Sbjct: 59 WIFSP--SRGSSGGILAIWD 76
Score = 23.9 bits (50), Expect(4) = e-100
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Frame = -2
Query: 230 FKHIWDIVINKDTIWVQWVQQ--NLIKGKDFWLLKTLVDASRCWRRI----LDHREA--- 78
FK IW + N ++W ++ N LK V W+ I L H A
Sbjct: 864 FKWIWRLFENPSSMWGSIIRSKYNYSSTCSISDLKKPVSGGP-WKSICAAVLGHEGARLI 922
Query: 77 ASKFVLHLIGNGRGTKLWKDRWL 9
A + +GNG + W D WL
Sbjct: 923 AVNGMRKNVGNGISSLFWHDTWL 945