BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00024930
         (3018 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77529.1| hypothetical protein VITISV_041425 [Vitis vinifera]   129   1e-65
emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]   129   1e-64
emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]   104   1e-58
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...   134   3e-54
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   116   8e-53
emb|CAB40035.1| retrotransposon like protein [Arabidopsis thalia...   133   4e-52
gb|AAC35532.1| contains similarity to proteases [Arabidopsis tha...   133   4e-52
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   127   7e-51
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         129   2e-49
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   141   5e-49
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   141   5e-49
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...   136   6e-49
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   149   6e-49
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   140   8e-49
gb|AAB82754.1| retrofit [Oryza longistaminata]                        148   1e-48
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   148   2e-48
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           135   4e-47
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...   135   1e-45
emb|CAN60276.1| hypothetical protein VITISV_028253 [Vitis vinifera]   139   2e-45
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   135   6e-45

>emb|CAN77529.1| hypothetical protein VITISV_041425 [Vitis vinifera]
          Length = 1047

 Score =  129 bits (325), Expect(4) = 1e-65
 Identities = 63/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
 Frame = +2

Query: 2258 SFIL-SHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVK 2434
            SF++ +  EP +Y    K   WV  M+++  AL +N+TW+ VP  P  +++GC+W+YK+K
Sbjct: 743  SFLMQTTSEPHTYSQAFKSEPWVQAMQHQYQALRHNHTWSLVPPPPSAHIVGCRWIYKLK 802

Query: 2435 LRSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVS 2614
              S GSV  +K+RL A+G+ Q  G+DY + F+ +VK  TIR+IL +A+   W +RQLDV 
Sbjct: 803  YLSNGSVERHKARLVAQGFTQTPGVDYFDTFNPVVKPCTIRLILALAVSFQWPIRQLDVE 862

Query: 2615 NAFWHGALHETVYMEQPKGFF*SRQPH 2695
            NAF +  L + V+M QP+GF   + PH
Sbjct: 863  NAFLNEDLQDEVFMAQPQGFVHPQYPH 889



 Score = 99.8 bits (247), Expect(4) = 1e-65
 Identities = 51/129 (39%), Positives = 76/129 (58%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            TPQQN     KI ++ E G T+   +++P  +   +F T+ +LIN   +KLL F++P +V
Sbjct: 518  TPQQNGRAKRKIHHLVETGMTLLAQSFLPSKYWSFSFQTSVYLINLLLAKLLNFQSPLQV 577

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LF   P+   L V+GC CFP L       LS +S  C F+G    HKGY C ++S+++L+
Sbjct: 578  LFHKIPNYHHLRVFGCLCFPSLRPYNHHKLSYRSIACVFLGYASAHKGYICLDVSTSRLY 637

Query: 1934 ISIHVIFDE 1960
            IS  V+F E
Sbjct: 638  ISRDVLFHE 646



 Score = 63.9 bits (154), Expect(4) = 1e-65
 Identities = 52/167 (31%), Positives = 65/167 (38%), Gaps = 52/167 (31%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STNFSMKH------- 2798
            F  P  P +VCKL+KA YGL QAP  WFQ             S+  T+  + H       
Sbjct: 882  FVHPQYPHYVCKLHKALYGLKQAPRAWFQKLRVALVDYGFQSSQADTSLFIHHTTSDILI 941

Query: 2799 ---------------------------------LGELHYFFGMKVTHVSAKNSIL-LTQS 2876
                                             LG L YF G++      + S+L L Q 
Sbjct: 942  LLVYVDDILVTSSNPKLVSHFISYLHDKFALRDLGPLSYFLGIQ---AQQQGSVLHLNQQ 998

Query: 2877 KYTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQEYRSLVG 3017
            KY  +LL R  M   KP   P + G  +S  DG  LP P EYR +VG
Sbjct: 999  KYIADLLHRTQMEASKPAPTPGSLGRTLSQSDGVPLPNPSEYRRIVG 1045



 Score = 28.9 bits (63), Expect(4) = 1e-65
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 2023 SSHSYLSLTLPPPYSHN*GT*SISPQSPILTDKSSSESPCPPELTILAP--QHPMTIRSQ 2196
            S+ S  +++ P P S    T S S   P L     + +P P   +  +P   HPM  R++
Sbjct: 677  STSSPPTVSFPVPTSSTDYT-STSDSLPPLLQVPFAPTPSPTPSSSPSPLNTHPMVTRAK 735

Query: 2197 HGVHKQK 2217
             G+HK+K
Sbjct: 736  SGIHKKK 742


>emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]
          Length = 1539

 Score =  129 bits (323), Expect(4) = 1e-64
 Identities = 64/147 (43%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
 Frame = +2

Query: 2258 SFIL-SHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVK 2434
            SF++ +  EP +Y    K   W   M++E  AL  N+TW+ VP  P  +++GC+W+YK+K
Sbjct: 1025 SFLMQTTSEPHTYNQASKSEPWDQAMQHEYQALLRNHTWSLVPPPPSAHIVGCRWIYKLK 1084

Query: 2435 LRSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVS 2614
                GSV  +K+RL A+G+ +  G+DY + FS +VK  TIR+ILT+A+   W +RQLDV 
Sbjct: 1085 YLPNGSVERHKARLVAQGFTKTPGVDYFDTFSPIVKPCTIRLILTLAVSFQWPIRQLDVE 1144

Query: 2615 NAFWHGALHETVYMEQPKGFF*SRQPH 2695
            N F +G L E V+M QP+GF   + PH
Sbjct: 1145 NXFLNGDLQEEVFMAQPQGFVHPQYPH 1171



 Score = 95.9 bits (237), Expect(4) = 1e-64
 Identities = 49/129 (37%), Positives = 74/129 (57%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            T QQN     KI ++ E G  +   +++P  +    F T+ +LIN  P+KLL F++P +V
Sbjct: 800  TAQQNGRAERKICHLVETGMALLAQSFLPSKYWSFAFQTSVYLINLLPAKLLNFQSPLQV 859

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LF   P+   L V+ C CFP L       LS +S+ C F+G    HKGY C ++S+++L+
Sbjct: 860  LFHKIPNYHHLRVFACLCFPSLRPYNHHKLSYRSTACVFLGYASAHKGYICLDVSTSRLY 919

Query: 1934 ISIHVIFDE 1960
            IS  V+F E
Sbjct: 920  ISRDVLFHE 928



 Score = 65.1 bits (157), Expect(4) = 1e-64
 Identities = 52/167 (31%), Positives = 66/167 (39%), Gaps = 52/167 (31%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STNFSMKH------- 2798
            F  P  P +VCKL KA YGL QAP +WFQ             S+  T+  + H       
Sbjct: 1164 FVHPQYPHYVCKLYKALYGLKQAPRVWFQKLRVALVDYGFQSSRADTSLFIHHTASNILI 1223

Query: 2799 ---------------------------------LGELHYFFGMKVTHVSAKNSIL-LTQS 2876
                                             LG L YF G++      + S+L L Q 
Sbjct: 1224 LLVYVDDILVTGSNPKLVSHFISYLHDKFALRDLGPLSYFLGIQ---AQQQGSVLHLNQQ 1280

Query: 2877 KYTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQEYRSLVG 3017
            KY ++LL R  M   KP   P + G  +S  DG  LP P EYR +VG
Sbjct: 1281 KYIVDLLHRTQMEASKPTPTPGSLGRTLSQSDGVPLPDPSEYRRIVG 1327



 Score = 28.9 bits (63), Expect(4) = 1e-64
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 2023 SSHSYLSLTLPPPYSHN*GT*SISPQSPILTDKSSSESPCPPELTILAP--QHPMTIRSQ 2196
            S+ S  +++ P P S    T S S   P L     + +P P   +  +P   HPM  R +
Sbjct: 959  STSSPSTMSFPVPTSSTDCT-STSDSLPPLLQVPFAPTPSPTPSSSSSPLNTHPMVTRVK 1017

Query: 2197 HGVHKQK 2217
             G+HK+K
Sbjct: 1018 SGIHKKK 1024


>emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]
          Length = 1270

 Score =  104 bits (259), Expect(4) = 1e-58
 Identities = 52/129 (40%), Positives = 77/129 (59%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            TPQQN     KIR++ E G  +   +++P  +    F T+ +LIN  P+KLL F++P +V
Sbjct: 524  TPQQNGRAKRKIRHLVETGMALLAQSFLPSKYWSFAFQTSVYLINLLPTKLLNFQSPLQV 583

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LF   P+   L V+GC CFP L       LS +S+ C F+G    HKGY C ++S+++L+
Sbjct: 584  LFHKIPNYHHLRVFGCLCFPSLRPYNHHKLSYRSTACVFLGYASAHKGYICLDVSTSRLY 643

Query: 1934 ISIHVIFDE 1960
            IS  V+F E
Sbjct: 644  ISRDVLFHE 652



 Score =  102 bits (254), Expect(4) = 1e-58
 Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
 Frame = +2

Query: 2258 SFIL-SHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVK 2434
            SF++ +  EP +Y    K   WV  M++E  AL  N+TW+ VP  P  +++GC+W+YK+K
Sbjct: 749  SFLMQTTSEPHTYSQAFKSEPWVQAMQHEYQALLRNHTWSLVPPPPSAHIVGCRWIYKLK 808

Query: 2435 LRSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVS 2614
                GSV  +K+RL++                   +  TIR+IL +A+   W +RQLDV 
Sbjct: 809  YLPNGSVEKHKARLSS------------------CEACTIRLILALAVSFQWPIRQLDVE 850

Query: 2615 NAFWHGALHETVYMEQPKGFF*SRQPH 2695
            NAF +G L E V++ QP+GF   + PH
Sbjct: 851  NAFLNGDLQEEVFIAQPQGFVHPKYPH 877



 Score = 62.0 bits (149), Expect(4) = 1e-58
 Identities = 51/167 (30%), Positives = 65/167 (38%), Gaps = 52/167 (31%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STNFSMKH------- 2798
            F  P  P +VCKL+KA YGL QAP  WFQ             S+  T+  + H       
Sbjct: 870  FVHPKYPHYVCKLHKALYGLKQAPRAWFQKLRVALVDYGFQSSRADTSLFIHHIASDILI 929

Query: 2799 ---------------------------------LGELHYFFGMKVTHVSAKNSIL-LTQS 2876
                                             LG L YF G++      + S+L L Q 
Sbjct: 930  LLVYVDDILVTGSNPKLVSHFISYLHDKFALRDLGPLSYFLGIQ---AQQQGSVLDLNQQ 986

Query: 2877 KYTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQEYRSLVG 3017
            KY  +LL R  M   KP     + G  +S +DG  LP P EYR +VG
Sbjct: 987  KYIADLLHRTQMEASKPAPTLGSLGRTLSQFDGVHLPNPSEYRRIVG 1033



 Score = 29.6 bits (65), Expect(4) = 1e-58
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 2023 SSHSYLSLTLPPPYSHN*GT*SISPQSPILTDKSSSESPCPPELTILAP--QHPMTIRSQ 2196
            S+ S  +++ P P S    T S S   P L     S +P P   +  +P   HPM  R++
Sbjct: 683  STSSPPTVSFPIPTSSTDCT-STSDSLPPLLQVPFSPTPSPTPSSSPSPLNTHPMVTRAK 741

Query: 2197 HGVHKQK 2217
             G+HK+K
Sbjct: 742  SGIHKKK 748


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
            putative protein [Arabidopsis thaliana]
          Length = 1415

 Score =  109 bits (272), Expect(4) = 3e-54
 Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAF-KTPYE 1750
            TPQQN +   K R+ITE+G+++ F   +P+   ++ F+T+ FL N  PS +L   K+PYE
Sbjct: 579  TPQQNGIAERKHRHITELGSSMMFQGKVPQFLWVEAFYTSNFLCNLLPSSVLKDQKSPYE 638

Query: 1751 VLFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKL 1930
            VL   AP  + L V+GCAC+P L     +   PKS  C F G    +KGY+C+   + K+
Sbjct: 639  VLMGKAPVYTSLRVFGCACYPNLRPYASNKFDPKSLLCVFTGYNEKYKGYKCFHPPTGKI 698

Query: 1931 FISIHVIFDE 1960
            +I+ HV+FDE
Sbjct: 699  YINRHVLFDE 708



 Score = 75.1 bits (183), Expect(4) = 3e-54
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
 Frame = +2

Query: 725  WLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDIHMVGDFVYTTN-SIIALKDF 901
            W++DS  TSH+TN TS LQ+  PY+G D V+VGN     I  +G  V T+N   + L+D 
Sbjct: 293  WVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQGNLPLRDV 352

Query: 902  FCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKDLMLSNLFHK 1033
               P + ++L+S+ KLT    C +EF      VKD +   L  K
Sbjct: 353  LVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTK 396



 Score = 74.3 bits (181), Expect(4) = 3e-54
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
 Frame = +3

Query: 1119 LWNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQI 1298
            +W+ RLGHP   +L  L     I ++   S SLC + Q+GK  +LPF  S  V +  L+ 
Sbjct: 426  VWHMRLGHPNQDVLQQLLRNKAIVISKT-SHSLCDACQMGKICKLPFASSDFVSSRLLER 484

Query: 1299 FHCDVWGPSHVISNMGFRYYNYLLMILKSMYISYEN*R*ECHFFQ---HSSSMAANVFTT 1469
             HCD+WGP+ V+S+ GFRYY  + +   S +  +   R +  FF        M  N    
Sbjct: 485  VHCDLWGPAPVVSSQGFRYY-VIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKMVENQCQQ 543

Query: 1470 TIKYFQCNGTHELVKGVF 1523
             I  FQC+G  E +   F
Sbjct: 544  KIASFQCDGGGEFISNQF 561



 Score = 24.6 bits (52), Expect(4) = 3e-54
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 600 CQICKKD*HTTYRC 641
           CQIC K  H+ Y+C
Sbjct: 250 CQICNKYGHSAYKC 263



 Score =  134 bits (337), Expect(2) = 6e-37
 Identities = 62/131 (47%), Positives = 83/131 (63%)
 Frame = +2

Query: 2282 PKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYGSVGS 2461
            PK+ K  +KDP W   M  E  +    +TW  VP    +  LGC+WV+K KL++ G++  
Sbjct: 878  PKTVKTALKDPGWTDAMGEEYDSFEETHTWDLVPPDSFITPLGCRWVFKTKLKADGTLDR 937

Query: 2462 YKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWHGALH 2641
             K+RL AKGY Q +G+DY E +S +V+  T+R IL +A  N W ++QLDV NAF HG L 
Sbjct: 938  LKARLVAKGYEQEEGVDYMETYSPVVRTATVRTILHVATINKWEIKQLDVKNAFLHGDLK 997

Query: 2642 ETVYMEQPKGF 2674
            ETVYM QP GF
Sbjct: 998  ETVYMYQPPGF 1008



 Score = 50.1 bits (118), Expect(2) = 6e-37
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTFSK*STNFS-MKHLGELHYFFGMK----VT 2837
            F + D P +VCKLNKA YGL QAP  WF  FS     F  +    +   F  +K    + 
Sbjct: 1008 FENQDRPDYVCKLNKAIYGLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGRDLMF 1067

Query: 2838 HVSAKNSILLT--QSKYTLELLQRADMLDFKPCTIPV 2942
             +   + +LLT    KY ++LL  A M D  P   P+
Sbjct: 1068 LLLYMDDMLLTGNNKKYAMDLLVAAGMADCAPMPTPL 1104


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  116 bits (290), Expect(3) = 8e-53
 Identities = 58/130 (44%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLL-AFKTPYE 1750
            TPQQN +   K R +TE G T+ F +  P+ F ++ FFTA FL N  P+  L +  TPY+
Sbjct: 601  TPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFLSNLLPTSALDSSTTPYQ 660

Query: 1751 VLFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKL 1930
            VLF  APD S L  +GCACFP L    ++   P+S  C F+G    +KGYRC+   +N++
Sbjct: 661  VLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPPTNRV 720

Query: 1931 FISIHVIFDE 1960
            ++S HV+FDE
Sbjct: 721  YLSRHVLFDE 730



 Score = 81.6 bits (200), Expect(3) = 8e-53
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
 Frame = +3

Query: 1119 LWNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQI 1298
            +W+ RLGHP   +L  LA+   IQ+ N  ++ +C S ++GKS RLPF  S  + + PL+ 
Sbjct: 448  VWHMRLGHPNPQVLQLLANKKAIQI-NKSTSKMCESCRLGKSSRLPFIASDFIASRPLER 506

Query: 1299 FHCDVWGPSHVISNMGFRYYNYLLMILKSMYISYEN*R*E---CHFFQHSSSMAANVFTT 1469
             HCD+WGP+ V S  GF+YY  + +  +S +  +   + +   C  F    S   N+  T
Sbjct: 507  VHCDLWGPAPVSSIQGFQYY-VIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQT 565

Query: 1470 TIKYFQCNGTHELVKGVFRRLLDQ 1541
             I  FQ +G  E     F + L +
Sbjct: 566  KIGTFQSDGGGEFTSNRFLQHLQE 589



 Score = 60.5 bits (145), Expect(3) = 8e-53
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
 Frame = +2

Query: 692  IQVPSTSTHVQWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDIHMVGDF-VY 868
            + +   S    W+ DSA T+H+TN +S LQ   PY G D V+  +G    I  +G   + 
Sbjct: 303  LHITDVSDDSGWVPDSAATAHITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLP 362

Query: 869  TTNSIIALKDFFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKD 1006
            +T+  + LKD    P + ++L+S+ KLT+   C   F      VKD
Sbjct: 363  STSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKD 408



 Score = 90.9 bits (224), Expect = 3e-15
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = +2

Query: 2426 KVKLRSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQL 2605
            +VKL   GS+  YK+RL A+G+ Q +GIDY E +S +V+  T+R +L ++    W ++Q+
Sbjct: 902  RVKLNVDGSLDKYKARLVAQGFKQEEGIDYLETYSPVVRSATVRAVLHLSTIMNWELKQM 961

Query: 2606 DVSNAFWHGALHETVYMEQPKGFF*SRQP-HTCV 2704
            DV N F HG L ETVYM+QP GF     P H C+
Sbjct: 962  DVKNGFLHGDLTETVYMKQPAGFIDKAHPDHVCL 995


>emb|CAB40035.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7267767|emb|CAB81170.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1515

 Score =  106 bits (264), Expect(4) = 4e-52
 Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAF-KTPYE 1750
            TPQQN +   + RY+TE+G ++ F + +P    ++ FFT+ FL N  PS  L+  K+PYE
Sbjct: 610  TPQQNGIAERRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYE 669

Query: 1751 VLFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKL 1930
            +L    P  + L V+G AC+P+L    K+   PKS  C F+G  + +KGYRC    + K+
Sbjct: 670  MLHGTPPVYTALRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKV 729

Query: 1931 FISIHVIFDE 1960
            +I  HV+FDE
Sbjct: 730  YICRHVLFDE 739



 Score = 78.6 bits (192), Expect(4) = 4e-52
 Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
 Frame = +3

Query: 1119 LWNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQI 1298
            +W+QRLGHP   +L +L     I + N  S+++C + Q+GK  RLPF  S  V + PL+ 
Sbjct: 457  VWHQRLGHPNKEVLQHLIKTKAI-VVNKTSSNMCEACQMGKVCRLPFVASEFVSSRPLER 515

Query: 1299 FHCDVWGPSHVISNMGFRYY-----NY------LLMILKSMYISYEN*R*ECHFFQHSSS 1445
             HCD+WGP+ V S  GF+YY     NY        + LKS + S          F     
Sbjct: 516  IHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFS---------VFVLFQQ 566

Query: 1446 MAANVFTTTIKYFQCNGTHELVKGVF 1523
            +  N +   I  FQC+G  E V   F
Sbjct: 567  LVENQYQHKIAMFQCDGGGEFVSYKF 592



 Score = 67.4 bits (163), Expect(4) = 4e-52
 Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
 Frame = +2

Query: 710  STHVQWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDIHMVGDF-VYTTNSII 886
            S+H +WL DSA T+H+TN T  LQN   Y+G D V+VGNG    I  +G   +  +   +
Sbjct: 320  SSH-EWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTL 378

Query: 887  ALKDFFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKDLMLSNLF-----HKVPMMVI 1051
             L+D    P + ++L+S+ KLT    C   F      +KD     L      HK   ++ 
Sbjct: 379  PLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLK 438

Query: 1052 SIQFFFYFLFITC*CYYSVRFYTLEPETW 1138
             + F           YYS R  + + E W
Sbjct: 439  DVPFQ---------TYYSTRQQSSDDEVW 458



 Score = 24.3 bits (51), Expect(4) = 4e-52
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 600 CQICKKD*HTTYRCILDME 656
           CQIC+K  H+ ++C    E
Sbjct: 278 CQICRKYGHSAFKCYTRFE 296



 Score =  133 bits (335), Expect(2) = 5e-35
 Identities = 63/135 (46%), Positives = 84/135 (62%)
 Frame = +2

Query: 2270 SHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYG 2449
            ++ EPKS K  +KD  W   M  E   +   +TW  VP   +  +LGCKWV+K KL S G
Sbjct: 916  NYPEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDG 975

Query: 2450 SVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWH 2629
            S+   K+RL A+GY Q +G+DY E +S +V+  T+R IL +A  N W ++QLDV NAF H
Sbjct: 976  SLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLH 1035

Query: 2630 GALHETVYMEQPKGF 2674
              L ETV+M QP GF
Sbjct: 1036 DELKETVFMTQPPGF 1050



 Score = 44.3 bits (103), Expect(2) = 5e-35
 Identities = 19/32 (59%), Positives = 20/32 (62%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTFS 2768
            F DP  P +VCKL KA Y L QAP  WF  FS
Sbjct: 1050 FEDPSRPDYVCKLKKAIYDLKQAPRAWFDKFS 1081


>gb|AAC35532.1| contains similarity to proteases [Arabidopsis thaliana]
          Length = 1392

 Score =  106 bits (264), Expect(4) = 4e-52
 Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAF-KTPYE 1750
            TPQQN +   + RY+TE+G ++ F + +P    ++ FFT+ FL N  PS  L+  K+PYE
Sbjct: 613  TPQQNGIAERRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYE 672

Query: 1751 VLFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKL 1930
            +L    P  + L V+G AC+P+L    K+   PKS  C F+G  + +KGYRC    + K+
Sbjct: 673  MLHGTPPVYTALRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKV 732

Query: 1931 FISIHVIFDE 1960
            +I  HV+FDE
Sbjct: 733  YICRHVLFDE 742



 Score = 78.6 bits (192), Expect(4) = 4e-52
 Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
 Frame = +3

Query: 1119 LWNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQI 1298
            +W+QRLGHP   +L +L     I + N  S+++C + Q+GK  RLPF  S  V + PL+ 
Sbjct: 460  VWHQRLGHPNKEVLQHLIKTKAI-VVNKTSSNMCEACQMGKVCRLPFVASEFVSSRPLER 518

Query: 1299 FHCDVWGPSHVISNMGFRYY-----NY------LLMILKSMYISYEN*R*ECHFFQHSSS 1445
             HCD+WGP+ V S  GF+YY     NY        + LKS + S          F     
Sbjct: 519  IHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFS---------VFVLFQQ 569

Query: 1446 MAANVFTTTIKYFQCNGTHELVKGVF 1523
            +  N +   I  FQC+G  E V   F
Sbjct: 570  LVENQYQHKIAMFQCDGGGEFVSYKF 595



 Score = 67.4 bits (163), Expect(4) = 4e-52
 Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
 Frame = +2

Query: 710  STHVQWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDIHMVGDF-VYTTNSII 886
            S+H +WL DSA T+H+TN T  LQN   Y+G D V+VGNG    I  +G   +  +   +
Sbjct: 323  SSH-EWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTL 381

Query: 887  ALKDFFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKDLMLSNLF-----HKVPMMVI 1051
             L+D    P + ++L+S+ KLT    C   F      +KD     L      HK   ++ 
Sbjct: 382  PLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLK 441

Query: 1052 SIQFFFYFLFITC*CYYSVRFYTLEPETW 1138
             + F           YYS R  + + E W
Sbjct: 442  DVPFQ---------TYYSTRQQSSDDEVW 461



 Score = 24.3 bits (51), Expect(4) = 4e-52
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 600 CQICKKD*HTTYRCILDME 656
           CQIC+K  H+ ++C    E
Sbjct: 281 CQICRKYGHSAFKCYTRFE 299



 Score =  133 bits (335), Expect(2) = 5e-35
 Identities = 63/135 (46%), Positives = 84/135 (62%)
 Frame = +2

Query: 2270 SHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYG 2449
            ++ EPKS K  +KD  W   M  E   +   +TW  VP   +  +LGCKWV+K KL S G
Sbjct: 793  NYPEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDG 852

Query: 2450 SVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWH 2629
            S+   K+RL A+GY Q +G+DY E +S +V+  T+R IL +A  N W ++QLDV NAF H
Sbjct: 853  SLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLH 912

Query: 2630 GALHETVYMEQPKGF 2674
              L ETV+M QP GF
Sbjct: 913  DELKETVFMTQPPGF 927



 Score = 44.3 bits (103), Expect(2) = 5e-35
 Identities = 19/32 (59%), Positives = 20/32 (62%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTFS 2768
            F DP  P +VCKL KA Y L QAP  WF  FS
Sbjct: 927  FEDPSRPDYVCKLKKAIYDLKQAPRAWFDKFS 958


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
            Arabidopsis thaliana BAC gb|AF080119 and is a member of
            the reverse transcriptase family PF|00078 [Arabidopsis
            thaliana]
          Length = 1415

 Score =  112 bits (279), Expect(4) = 7e-51
 Identities = 53/129 (41%), Positives = 83/129 (64%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            TPQQN +   K R++ E+G ++ F ++ P+ F +++FFTA ++IN+ PS +L   +PYE 
Sbjct: 609  TPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEA 668

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LF   PD S L V+G AC+P L    ++   P+S  C F+G    +KGYRC+   + K++
Sbjct: 669  LFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVY 728

Query: 1934 ISIHVIFDE 1960
            IS +VIF+E
Sbjct: 729  ISRNVIFNE 737



 Score = 79.0 bits (193), Expect(4) = 7e-51
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
 Frame = +3

Query: 1119 LWNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQI 1298
            +W+ RLGH  +  L +L +   IQ+  + ++ +C   Q+GKS RLPF  S      PL  
Sbjct: 455  VWHHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDR 514

Query: 1299 FHCDVWGPSHVISNMGFRYYNYLL--MILKSMYISYEN*R*ECHFFQHSSSMAANVFTTT 1472
             HCD+WGPS V+SN G +YY   +      S +    N       F     +  N   T 
Sbjct: 515  IHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTK 574

Query: 1473 IKYFQCNGTHELVKGVFRRLLDQ 1541
            IK FQ +G  E V    +  L +
Sbjct: 575  IKVFQSDGGGEFVSNKLKTHLSE 597



 Score = 57.0 bits (136), Expect(4) = 7e-51
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = +2

Query: 704  STSTHVQWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDI-HMVGDFVYTTNS 880
            S  T  +W  DSA T+H+T+ T+ LQ+   Y G D VLVG+G    I H     + ++N 
Sbjct: 315  SDDTGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNG 374

Query: 881  IIALKDFFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKDL 1009
             I L +   VP ++++L+S+ KL     C V F   +  + DL
Sbjct: 375  KIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDL 417



 Score = 24.3 bits (51), Expect(4) = 7e-51
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 597 VCQICKKD*HTTYRCILDMEN 659
           VCQIC +  HT  +C    +N
Sbjct: 280 VCQICGRTGHTALKCYNRFDN 300



 Score =  127 bits (319), Expect = 3e-26
 Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
 Frame = +2

Query: 2279 EPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYGSVG 2458
            EPK+  + +K P W   +  E   +   +TW+ VP    MN+L  KWV+K KL   GS+ 
Sbjct: 859  EPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSID 918

Query: 2459 SYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWHGAL 2638
              K+RL AKG+ Q +G+DY E FS +V+  TIR++L ++   GW ++QLDVSNAF HG L
Sbjct: 919  KLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGEL 978

Query: 2639 HETVYMEQPKGFF*SRQP-HTC 2701
             E V+M QP GF   ++P H C
Sbjct: 979  QEPVFMYQPSGFIDPQKPTHVC 1000


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  110 bits (274), Expect(4) = 2e-49
 Identities = 55/129 (42%), Positives = 79/129 (61%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            TPQQN V   K R++ E+G ++ + ++ P  F ++ FFTA +L N  PS +L   +PYE 
Sbjct: 611  TPQQNGVAERKHRHLVELGLSMLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYET 670

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LFQ   D + L V+G AC+P L    K+   P+S  C F+G  + +KGYRC    + K++
Sbjct: 671  LFQQKVDYTPLRVFGTACYPCLRPLAKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVY 730

Query: 1934 ISIHVIFDE 1960
            IS HVIFDE
Sbjct: 731  ISRHVIFDE 739



 Score = 73.9 bits (180), Expect(4) = 2e-49
 Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
 Frame = +3

Query: 1122 WNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQIF 1301
            W+ RLGH  + IL  L +   IQ+  + ++ +C   Q+GKS RL F  S      PL   
Sbjct: 458  WHHRLGHSNSKILQQLLTRKEIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRV 517

Query: 1302 HCDVWGPSHVISNMGFRYYN-----------YLLMILKSMYISYEN*R*ECHFFQHSSSM 1448
            HCD+WGPS V+SN GF+YY            +  + +KS +IS          F     +
Sbjct: 518  HCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFIS---------VFIAYQKL 568

Query: 1449 AANVFTTTIKYFQCNGTHE 1505
              N   T IK FQ +G  E
Sbjct: 569  VENQLGTKIKEFQSDGGGE 587



 Score = 60.1 bits (144), Expect(4) = 2e-49
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
 Frame = +2

Query: 704  STSTHVQWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDIHMVGD-FVYTTNS 880
            S  T  +W  DSA T+H+T  TS LQN   Y G D VLVG+G    I  VG   + ++  
Sbjct: 317  SDETGKEWYPDSAATAHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVGSTTISSSKG 376

Query: 881  IIALKDFFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKDLMLSNLFHKVP 1039
             I L +    P ++++L+S+ KL     C V F   +  + DL    +  K P
Sbjct: 377  TIPLNEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLTTQKVVSKGP 429



 Score = 23.5 bits (49), Expect(4) = 2e-49
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 597 VCQICKKD*HTTYRCILDMEN 659
           VCQIC +  HT  +C    +N
Sbjct: 280 VCQICGRIGHTAIKCYNRFDN 300



 Score =  129 bits (324), Expect = 8e-27
 Identities = 65/145 (44%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
 Frame = +2

Query: 2270 SHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYG 2449
            S  EPK+    +K P W   + +E   +   NTW+ VP    MN+L  KWV+K KL+  G
Sbjct: 874  SFDEPKTITTAMKHPSWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKLKPDG 933

Query: 2450 SVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWH 2629
            ++   K+RL AKG+ Q +G+DY E FS +V+  TIR++L  A  N W ++QLDVSNAF H
Sbjct: 934  TIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQLDVSNAFLH 993

Query: 2630 GALHETVYMEQPKGFF*SRQP-HTC 2701
            G L E V+M QP GF    +P H C
Sbjct: 994  GELQEPVFMFQPSGFVDPNKPNHVC 1018


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  141 bits (356), Expect(2) = 5e-49
 Identities = 70/146 (47%), Positives = 92/146 (63%)
 Frame = +2

Query: 2258 SFILSHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKL 2437
            S+  +  EP +    +KD  W   M +E  AL  N TW  VP     N++GCKWVYK+K 
Sbjct: 659  SWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKR 718

Query: 2438 RSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSN 2617
            ++ G++  YK+RL AKG+ Q  GIDY + FS +VK  TIR+IL++A+  GW +RQLDV N
Sbjct: 719  KADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQN 778

Query: 2618 AFWHGALHETVYMEQPKGFF*SRQPH 2695
            AF HG L E VYM QP GF    +PH
Sbjct: 779  AFLHGYLEEEVYMLQPPGFEDPTKPH 804



 Score = 83.2 bits (204), Expect(2) = 5e-49
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 54/169 (31%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STN------------ 2783
            F DP  P HVCKL+KA YGL QAP  WF              SK  T+            
Sbjct: 797  FEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMF 856

Query: 2784 ----------------------------FSMKHLGELHYFFGMKVTHVSAKNSILLTQSK 2879
                                        F++K LGELHYF G++V+ V  +N I+L Q K
Sbjct: 857  VLVYVDDIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEVSKV--QNGIVLNQDK 914

Query: 2880 YTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQE---YRSLVG 3017
            Y  +LL++  M+D KP   P++   ++S+++G LL  P++   YRS+VG
Sbjct: 915  YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLG-PEDASHYRSVVG 962


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  141 bits (356), Expect(2) = 5e-49
 Identities = 70/146 (47%), Positives = 92/146 (63%)
 Frame = +2

Query: 2258 SFILSHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKL 2437
            S+  +  EP +    +KD  W   M +E  AL  N TW  VP     N++GCKWVYK+K 
Sbjct: 937  SWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKR 996

Query: 2438 RSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSN 2617
            ++ G++  YK+RL AKG+ Q  GIDY + FS +VK  TIR+IL++A+  GW +RQLDV N
Sbjct: 997  KADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQN 1056

Query: 2618 AFWHGALHETVYMEQPKGFF*SRQPH 2695
            AF HG L E VYM QP GF    +PH
Sbjct: 1057 AFLHGYLEEEVYMLQPPGFEDPTKPH 1082



 Score = 83.2 bits (204), Expect(2) = 5e-49
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 54/169 (31%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STN------------ 2783
            F DP  P HVCKL+KA YGL QAP  WF              SK  T+            
Sbjct: 1075 FEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMF 1134

Query: 2784 ----------------------------FSMKHLGELHYFFGMKVTHVSAKNSILLTQSK 2879
                                        F++K LGELHYF G++V+ V  +N I+L Q K
Sbjct: 1135 VLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKV--QNGIVLNQDK 1192

Query: 2880 YTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQE---YRSLVG 3017
            Y  +LL++  M+D KP   P++   ++S+++G LL  P++   YRS+VG
Sbjct: 1193 YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLG-PEDASHYRSVVG 1240



 Score =  102 bits (255), Expect = 8e-19
 Identities = 52/129 (40%), Positives = 78/129 (60%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            T QQN     K R+I E+G ++   A MP  F  + F  AT+LIN+ PS+++   +P E 
Sbjct: 603  THQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEK 662

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LF+  PD S L ++GCAC+P L       L  +S  C F+G   +HKG++C E+S+ +++
Sbjct: 663  LFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIY 722

Query: 1934 ISIHVIFDE 1960
            IS  V+FDE
Sbjct: 723  ISRDVVFDE 731


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score =  108 bits (269), Expect(4) = 6e-49
 Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTP-SKLLAFKTPYE 1750
            TPQQN +   K R+I E+G ++ F + +P  + L++FFTA F+IN  P S L   ++PY+
Sbjct: 613  TPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTSSLDNNESPYQ 672

Query: 1751 VLFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKL 1930
             L+  AP+ S L V+GCAC+P L         P+S  C F+G    +KGYRC    + ++
Sbjct: 673  KLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGYRCLYPPTGRI 732

Query: 1931 FISIHVIFDE 1960
            +IS HV+FDE
Sbjct: 733  YISRHVVFDE 742



 Score = 76.3 bits (186), Expect(4) = 6e-49
 Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
 Frame = +3

Query: 1119 LWNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQI 1298
            +W++RLGH    +L  LAS   I + N    ++C +  +GKS RLPF  S    + PL+ 
Sbjct: 459  VWHRRLGHANAEVLHQLASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLER 518

Query: 1299 FHCDVWGPSHVISNMGFRYYNYLL-----------MILKSMYISYEN*R*ECHFFQHSSS 1445
             HCD+WGPS   S  GFRYY   +           + LKS + S          F     
Sbjct: 519  IHCDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFFS---------TFVMFQK 569

Query: 1446 MAANVFTTTIKYFQCNGTHELVKGVFRRLL 1535
            +  N     IK FQC+G  E +   F + L
Sbjct: 570  LVENQLGHKIKIFQCDGGGEFISSQFLKHL 599



 Score = 59.7 bits (143), Expect(4) = 6e-49
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +2

Query: 722  QWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDI-HMVGDFVYTTNSIIALKD 898
            +W+ DSA ++H+TN   +LQ   PY G D ++V +G    I H     + +++  I LK+
Sbjct: 325  EWIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGSIASSSGKIPLKE 384

Query: 899  FFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKD 1006
                P + ++L+S+ KLT    C VEF      + D
Sbjct: 385  VLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRIND 420



 Score = 21.6 bits (44), Expect(4) = 6e-49
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 597 VCQICKKD*HTTYRC 641
           VCQIC K  H   +C
Sbjct: 279 VCQICGKAGHHALKC 293



 Score =  136 bits (342), Expect = 7e-29
 Identities = 68/147 (46%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
 Frame = +2

Query: 2267 LSHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSY 2446
            +S  EPK+    +K P W   M+ E        TWT VPY P MNVLG  WV++ KL + 
Sbjct: 911  VSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWVFRTKLHAD 970

Query: 2447 GSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFW 2626
            GS+   K+RL AKG+ Q +GIDY E +S +V+  T+R+IL +A    W ++Q+DV NAF 
Sbjct: 971  GSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDVKNAFL 1030

Query: 2627 HGALHETVYMEQPKGFF*SRQP-HTCV 2704
            HG L ETVYM QP GF    +P H C+
Sbjct: 1031 HGDLTETVYMRQPAGFVDKSKPDHVCL 1057


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  149 bits (376), Expect(2) = 6e-49
 Identities = 73/139 (52%), Positives = 92/139 (66%)
 Frame = +2

Query: 2279 EPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYGSVG 2458
            EP + K   KDP W   M+ E  AL  N+TW  V   P +NV+GCKWVYK+K +  GS+ 
Sbjct: 887  EPSTLKQAFKDPNWTKAMEMEIAALHRNHTWDLVEQPPNVNVIGCKWVYKLKHKPDGSIE 946

Query: 2459 SYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWHGAL 2638
             YK+RL AKGY+Q  G+DY E FS +VK  TIR+ILT+AL   W +RQLDV NAF +G L
Sbjct: 947  RYKARLVAKGYNQTHGLDYFETFSPVVKAATIRIILTVALSFKWEIRQLDVHNAFLNGEL 1006

Query: 2639 HETVYMEQPKGFF*SRQPH 2695
             E VYM QP G+F  + P+
Sbjct: 1007 EEQVYMSQPPGYFDPQFPN 1025



 Score = 75.1 bits (183), Expect(2) = 6e-49
 Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 51/166 (30%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTFS---------------------------- 2768
            +FDP  P  VC+L KA YGL QAP  WFQ  S                            
Sbjct: 1018 YFDPQFPNRVCRLKKALYGLKQAPRAWFQRLSSALLQWGFSMSRTDSSMFLHFGKATTLI 1077

Query: 2769 -----------------------K*STNFSMKHLGELHYFFGMKVTHVSAKNSILLTQSK 2879
                                   K  + F+++ LG+L +F G++V++   + S+ L+Q+K
Sbjct: 1078 VLVYVDDILVTGSSSTQISSLIAKLDSVFALRDLGQLSFFLGIEVSY--NEGSMTLSQTK 1135

Query: 2880 YTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQEYRSLVG 3017
            Y  +LL R ++ D KP   P   G  +S +DG+ +     YRS+VG
Sbjct: 1136 YISDLLHRTELFDTKPANTPGAVGKNLSKFDGDPMTDVTHYRSVVG 1181



 Score = 95.1 bits (235), Expect = 2e-16
 Identities = 47/126 (37%), Positives = 71/126 (56%)
 Frame = +2

Query: 1583 QNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEVLFQ 1762
            QN  V  K R++ E G  +   A +P  +    F T TFLIN+ PSK+L + +PY  LF+
Sbjct: 644  QNGRVERKHRHVVETGLALLSHASLPMKYWHYAFQTXTFLINRMPSKVLEYDSPYFTLFR 703

Query: 1763 NAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLFISI 1942
              PD     V+GC C+PF+       L  +S  C F+G    HKG+ C + ++ +++I+ 
Sbjct: 704  RHPDYKSFRVFGCLCYPFIRPYNTHKLQYRSVQCLFLGYSLNHKGFLCLDYATGRVYITP 763

Query: 1943 HVIFDE 1960
            HV+FDE
Sbjct: 764  HVVFDE 769



 Score = 65.9 bits (159), Expect = 1e-07
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
 Frame = +2

Query: 662  NGKKHQVNTIIQVPSTS-THVQWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLF 838
            NG ++ +  ++   S +     W  DS  + HLT     L +  PYTG DKV +GNGK  
Sbjct: 323  NGNQNNIPAMVASASNNPADESWYLDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNGKHL 382

Query: 839  DIHMVGD-FVYTTNSIIALKDFFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKDL 1009
             I  +G   +++      LK  F VP++  NL+S+ K    N   +EF      VKDL
Sbjct: 383  SISNIGSKQLHSHTHSFRLKKVFHVPFISANLISVAKFCSENNALIEFHSNAFFVKDL 440


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score =  140 bits (354), Expect(2) = 8e-49
 Identities = 69/139 (49%), Positives = 89/139 (64%)
 Frame = +2

Query: 2279 EPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYGSVG 2458
            EP +    +KD  W   M +E  AL  N TW  VP     N++GCKWVYK+K ++ G++ 
Sbjct: 937  EPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLD 996

Query: 2459 SYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWHGAL 2638
             YK+RL AKG+ Q  GIDY + FS +VK  TIR+IL++A+  GW +RQLDV NAF HG L
Sbjct: 997  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYL 1056

Query: 2639 HETVYMEQPKGFF*SRQPH 2695
             E VYM QP GF    +PH
Sbjct: 1057 EEEVYMLQPPGFEDPTKPH 1075



 Score = 83.2 bits (204), Expect(2) = 8e-49
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 54/169 (31%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STN------------ 2783
            F DP  P HVCKL+KA YGL QAP  WF              SK  T+            
Sbjct: 1068 FEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMF 1127

Query: 2784 ----------------------------FSMKHLGELHYFFGMKVTHVSAKNSILLTQSK 2879
                                        F++K LGELHYF G++V+ V  +N I+L Q K
Sbjct: 1128 VLVYVDDIIVASSSERATAALLQDLKGEFALKDLGELHYFLGIEVSKV--QNGIVLNQDK 1185

Query: 2880 YTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQE---YRSLVG 3017
            Y  +LL++  M+D KP   P++   ++S+++G LL  P++   YRS+VG
Sbjct: 1186 YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLG-PEDASHYRSVVG 1233



 Score =  102 bits (255), Expect = 8e-19
 Identities = 52/129 (40%), Positives = 78/129 (60%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            T QQN     K R+I E+G ++   A MP  F  + F  AT+LIN+ PS+++   +P E 
Sbjct: 636  THQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLINRVPSRVIHNISPLEK 695

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LF+  PD S L ++GCAC+P L       L  +S  C F+G   +HKG++C E+S+ +++
Sbjct: 696  LFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIY 755

Query: 1934 ISIHVIFDE 1960
            IS  V+FDE
Sbjct: 756  ISRDVVFDE 764


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  148 bits (373), Expect(2) = 1e-48
 Identities = 71/138 (51%), Positives = 93/138 (67%)
 Frame = +2

Query: 2279 EPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYGSVG 2458
            EP++ K  + D  W   M+ E  AL  N+TW  VPY    N++GCKWVYK+K ++ G++ 
Sbjct: 936  EPQNDKEALGDKNWRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLD 995

Query: 2459 SYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWHGAL 2638
             YK+RL AKG+ Q  GIDY + FS +VK  TIR+IL+IA+  GW +RQLDV NAF HG L
Sbjct: 996  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFL 1055

Query: 2639 HETVYMEQPKGFF*SRQP 2692
             E VYM+QP GF  S +P
Sbjct: 1056 EEEVYMQQPPGFESSSKP 1073



 Score = 75.1 bits (183), Expect(2) = 1e-48
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 53/168 (31%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STN------------ 2783
            F     P +VCKL+KA YGL QAP  W+              SK  T+            
Sbjct: 1067 FESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMF 1126

Query: 2784 ----------------------------FSMKHLGELHYFFGMKVTHVSAKNSILLTQSK 2879
                                        F++K LG+LHYF G++VT VS  N ++LTQ K
Sbjct: 1127 VLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVS--NGVILTQEK 1184

Query: 2880 YTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQ--EYRSLVG 3017
            Y  +LL+R +M + KP + P++   ++++Y+G  L      +YRS+VG
Sbjct: 1185 YANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVG 1232



 Score =  103 bits (257), Expect = 5e-19
 Identities = 54/127 (42%), Positives = 74/127 (58%)
 Frame = +2

Query: 1580 QQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEVLF 1759
            +QN     K R+I EVG ++   A MP  F  + F  AT+LIN+ PSK +   TP E LF
Sbjct: 611  RQNGSAERKHRHIVEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLF 670

Query: 1760 QNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLFIS 1939
               PD S L V+GCAC+P L       L  +S  C F+G    HKG++C ++SS +++IS
Sbjct: 671  NQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYIS 730

Query: 1940 IHVIFDE 1960
              V+FDE
Sbjct: 731  RDVVFDE 737


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  148 bits (374), Expect(2) = 2e-48
 Identities = 74/146 (50%), Positives = 94/146 (64%)
 Frame = +2

Query: 2255 TSFILSHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVK 2434
            T+F+    EP++  + +KD  W   M  E +AL NN TW  VP     NV+ CKWVYK+K
Sbjct: 730  TTFLTVTGEPENLDDALKDNNWKKAMDAEFMALQNNKTWHLVPPQKGRNVIDCKWVYKIK 789

Query: 2435 LRSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVS 2614
             +  GS+  YK+RL AKG+ Q  GIDY + FS +VK  TIR+IL+IA+  GW MRQLDV 
Sbjct: 790  RKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQ 849

Query: 2615 NAFWHGALHETVYMEQPKGFF*SRQP 2692
            NAF HG L E VYM+QP G+  S  P
Sbjct: 850  NAFLHGVLEEEVYMKQPPGYEDSSLP 875



 Score = 73.9 bits (180), Expect(2) = 2e-48
 Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 54/167 (32%)
 Frame = +3

Query: 2679 DPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STN-------------- 2783
            D   P +VCKL+KA YGL QAP  W+              SK  T+              
Sbjct: 871  DSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVL 930

Query: 2784 --------------------------FSMKHLGELHYFFGMKVTHVSAKNSILLTQSKYT 2885
                                      F++K LG+LHYF G++VT VS    I+LTQ KY 
Sbjct: 931  IYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSG--GIVLTQDKYV 988

Query: 2886 LELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQE---YRSLVG 3017
             +LL+R +M D KP + P++   ++S+ +G+ L  P +   YRS+VG
Sbjct: 989  NDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLG-PNDATHYRSVVG 1034



 Score =  110 bits (275), Expect = 4e-21
 Identities = 56/129 (43%), Positives = 80/129 (62%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            T QQN     K R+I E+G  +   + MP  F  + F +A +LIN+TPS+LL + TP E 
Sbjct: 407  THQQNGSAERKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVYLINRTPSRLLKYATPLER 466

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            LF+  PD ++L V+GCAC+P L       L  +S  CTF+G   LHKG++C + S+ +++
Sbjct: 467  LFKQTPDYNLLRVFGCACWPHLRPYNARKLQFRSKQCTFLGYSPLHKGFKCLDPSTGRVY 526

Query: 1934 ISIHVIFDE 1960
            IS  VIFDE
Sbjct: 527  ISHDVIFDE 535


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  103 bits (256), Expect(4) = 4e-47
 Identities = 51/129 (39%), Positives = 76/129 (58%)
 Frame = +2

Query: 1574 TPQQNEVVVCKIRYITEVGNTISFVAYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEV 1753
            TPQQN +   K R+  E+G ++ F ++ P  F ++ FFTA+FL N  PS  L   +P E 
Sbjct: 612  TPQQNGIAERKHRHFVELGLSMMFHSHTPLQFWVEAFFTASFLSNMLPSPSLGNVSPLEA 671

Query: 1754 LFQNAPDLSILTVYGCACFPFLGHSRKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLF 1933
            L +  P+ ++L V+G AC+P L    +    P+S  C F+G    +KGYRC    + +++
Sbjct: 672  LLKQKPNYAMLRVFGTACYPCLRPLGEHKFEPRSLQCVFLGYNSQYKGYRCLYPPTGRVY 731

Query: 1934 ISIHVIFDE 1960
            IS HVIFDE
Sbjct: 732  ISRHVIFDE 740



 Score = 71.2 bits (173), Expect(4) = 4e-47
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
 Frame = +3

Query: 1119 LWNQRLGHPTNMIL*NLASISLIQLANAPSASLCHS*QIGKSKRLPFQPSGRVYTAPLQI 1298
            +W+ RLGH  + IL  L S   I    +  + +C   Q+GKS +L F  S       L  
Sbjct: 458  IWHHRLGHSNSRILQQLKSSKEISFNKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGR 517

Query: 1299 FHCDVWGPSHVISNMGFRYYNYLLMILKSMYISYEN*R*ECHFFQ---HSSSMAANVFTT 1469
             HCD+WGPS V+S  GF+YY  + +   S Y  +   + +  FF       ++  N F T
Sbjct: 518  IHCDLWGPSPVVSKQGFKYY-VVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNT 576

Query: 1470 TIKYFQCNGTHELVKGVFRRLL 1535
             IK FQ +G  E    + ++ L
Sbjct: 577  KIKVFQSDGGGEFTSNLMKKHL 598



 Score = 61.6 bits (148), Expect(4) = 4e-47
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
 Frame = +2

Query: 704  STSTHVQWLSDSAVTSHLTNLTSILQNPHPYTGFDKVLVGNGKLFDIHMVGDFVYTTNS- 880
            S S+  +W+ DSA T+H+T+ T+ LQ   PY G D VLVG+G    I  VG    +++S 
Sbjct: 318  SDSSGKEWVPDSAATAHVTSSTNNLQAASPYNGSDTVLVGDGAYLPITHVGSTTISSDSG 377

Query: 881  IIALKDFFCVPYLKQNLVSIGKLTRYNFCFVEFTPCESSVKDLMLSNLFHKVP----MMV 1048
             + L +    P ++++L+S+ KL     C V F   +  + D+    +  K P    + V
Sbjct: 378  TLPLNEVLVCPDIQKSLLSVSKLCDDYPCGVYFDANKVCIIDINTQKVVSKGPRSNGLYV 437

Query: 1049 ISIQFFFYFLFITC*CYYSVRFYTLEPETW 1138
            +  Q F  F        YS R      E W
Sbjct: 438  LENQEFVAF--------YSNRQCAASEEIW 459



 Score = 23.5 bits (49), Expect(4) = 4e-47
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 597 VCQICKKD*HTTYRC 641
           VCQIC +  HT  +C
Sbjct: 281 VCQICGRTGHTALKC 295



 Score =  135 bits (340), Expect(3) = 8e-40
 Identities = 66/141 (46%), Positives = 89/141 (63%)
 Frame = +2

Query: 2270 SHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRSYG 2449
            S +EPKS    +  P W   + +E   +   +TW+ V     MN+LGC+WV+K KL+  G
Sbjct: 882  SVEEPKSIDEALNHPGWNNAVNDEMRTIHMLHTWSLVQPTEDMNILGCRWVFKTKLKPDG 941

Query: 2450 SVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAFWH 2629
            SV   K+RL AKG+HQ +G+DY E FS +V+  TIR++L +A   GW ++QLDVSNAF H
Sbjct: 942  SVDKLKARLVAKGFHQEEGLDYLETFSPVVRTATIRLVLDVATAKGWNIKQLDVSNAFLH 1001

Query: 2630 GALHETVYMEQPKGFF*SRQP 2692
            G L E VYM QP GF    +P
Sbjct: 1002 GELKEPVYMLQPPGFVDQEKP 1022



 Score = 53.5 bits (127), Expect(3) = 8e-40
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 51/166 (30%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTFSK*STNF---------------------- 2786
            F D + P++VC+L KA YGL QAP  WF T S    +F                      
Sbjct: 1016 FVDQEKPSYVCRLTKALYGLKQAPRAWFDTISNYLLDFGFSCSKSDPSLFTYHKNGKTLV 1075

Query: 2787 -----------------------------SMKHLGELHYFFGMKVTHVSAKNSILLTQSK 2879
                                         SMK LG   YF G+++   S+   + L Q+ 
Sbjct: 1076 LLLYVDDILLTGSDHNLLQELLMSLNKRFSMKDLGAPSYFLGVEIE--SSPEGLFLHQTA 1133

Query: 2880 YTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQEYRSLVG 3017
            Y  ++L +A M +      P+     +   + +L P P  +RSL G
Sbjct: 1134 YAKDILHQAAMSNCNSMPTPLPQ--HIENLNSDLFPEPTYFRSLAG 1177



 Score = 25.4 bits (54), Expect(3) = 8e-40
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 2173 HPMTIRSQHGVHK 2211
            HPMT RS+ G+HK
Sbjct: 857  HPMTTRSKAGIHK 869


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
            gi|31430072|gb|AAP52036.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1058

 Score =  135 bits (341), Expect(3) = 1e-45
 Identities = 65/137 (47%), Positives = 89/137 (64%)
 Frame = +2

Query: 2264 ILSHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVKLRS 2443
            ++S +EP +    +K+  W   M  E  AL +N TW  VP    +N++ CKWVYKVK ++
Sbjct: 568  LVSTEEPGNLHEALKNKHWKLAMDKEFEALVHNKTWHLVPPQKGVNIIDCKWVYKVKRKA 627

Query: 2444 YGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVSNAF 2623
              S+  YK+RL AKG+ Q  GIDY + FS +VK  TIR++L++A+  GW +RQLDV NAF
Sbjct: 628  DESIDRYKARLVAKGFKQRYGIDYEDTFSPIVKAATIRLVLSLAVSQGWSLRQLDVQNAF 687

Query: 2624 WHGALHETVYMEQPKGF 2674
             HG L E VYM QP G+
Sbjct: 688  LHGFLEEDVYMRQPPGY 704



 Score = 75.9 bits (185), Expect(3) = 1e-45
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
 Frame = +3

Query: 2679 DPDNPTHVCKLNKAFYGLNQAPCIWFQ--------------------TFSK*STNFSMKH 2798
            +P  P ++CKL+KA YGL QAP  W+                             F++K 
Sbjct: 706  EPKAPQYLCKLDKALYGLKQAPRAWYSRLIYVDDIIVASSSAQAVTALLRSLEKEFALKD 765

Query: 2799 LGELHYFFGMKVTHVSAKNSILLTQSKYTLELLQRADMLDFKPCTIPVTHGPRVSVYDGE 2978
            LGELHYF G++V    A  +ILL Q +Y  E+++R  M + K    P++   ++S Y+GE
Sbjct: 766  LGELHYFLGIEVK--KASGNILLNQERYASEIVKRVSMENCKSVGTPLSTVEKLSAYEGE 823

Query: 2979 LL--PCPQEYRSLVG 3017
             L      +YRS+VG
Sbjct: 824  KLGEKDATQYRSVVG 838



 Score = 22.3 bits (46), Expect(3) = 1e-45
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
 Frame = +1

Query: 2170 QHPM---TIRSQHGVHKQK 2217
            Q PM     RS+HG+HK K
Sbjct: 538  QQPMLGPATRSRHGIHKPK 556


>emb|CAN60276.1| hypothetical protein VITISV_028253 [Vitis vinifera]
          Length = 579

 Score =  139 bits (351), Expect(2) = 2e-45
 Identities = 65/148 (43%), Positives = 94/148 (63%)
 Frame = +2

Query: 2252 FTSFILSHQEPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKV 2431
            F S +L+  EPK +K+  K+P W+  M  E  AL +N TW  VP     N++G KWV++ 
Sbjct: 100  FLSVLLASTEPKGFKSAAKNPAWLASMDEEVQALQHNRTWVLVPRPAHTNIVGXKWVFRT 159

Query: 2432 KLRSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDV 2611
            K    GS+  +K+ L AKGY Q+ G+DY + FS ++K TT+ V+L++ + N W +RQLDV
Sbjct: 160  KYLLDGSIDCFKAHLVAKGYTQVPGLDYIDTFSPVIKATTVHVVLSLXVTNRWPLRQLDV 219

Query: 2612 SNAFWHGALHETVYMEQPKGFF*SRQPH 2695
             NAF +G L E VY+EQP G+   R P+
Sbjct: 220  KNAFLNGTLTENVYIEQPXGYIDPRYPN 247



 Score = 73.2 bits (178), Expect(2) = 2e-45
 Identities = 45/115 (39%), Positives = 61/115 (53%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTFSK*STNFSMKHLGELHYFFGMKVTHVSAK 2852
            + DP  P HV +L KA YGL QAP   F    K +  F+ K LG L YF  ++ T  S  
Sbjct: 240  YIDPRYPNHVXQLKKALYGLKQAPRACFA--RKLNFEFATKDLGSLSYFLSLEAT--STT 295

Query: 2853 NSILLTQSKYTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQEYRSLVG 3017
            + +L++Q KY  ++L  A +LD KP   P+     ++  DG     P  YRSLVG
Sbjct: 296  DGLLISQLKYARDILNXAQLLDSKPVHTPMIVSQHLT-SDGPAFSDPTLYRSLVG 349


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  135 bits (340), Expect(3) = 6e-45
 Identities = 66/140 (47%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2258 SFILSHQ-EPKSYKNVIKDPKWVTVMKNENIALSNNNTWTKVPYHPLMNVLGCKWVYKVK 2434
            SFI+ H  EP++Y    K+  WV  M +E  AL  NNTW+ VP     +++GC+W+YK+K
Sbjct: 197  SFIVQHTTEPRTYSQAFKNDSWVQAMNSEYQALLRNNTWSLVPPPSSAHIVGCRWIYKLK 256

Query: 2435 LRSYGSVGSYKSRLAAKGYHQLDGIDYTENFSLLVKFTTIRVILTIALFNGWIMRQLDVS 2614
             R  GS+  +K+RL A+G+ Q  GIDY + FS +VK  TIR+IL +A+   W +RQLDV 
Sbjct: 257  YRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVE 316

Query: 2615 NAFWHGALHETVYMEQPKGF 2674
            N F +G L E V+M QP+GF
Sbjct: 317  NGFLNGDLEEEVFMTQPQGF 336



 Score = 62.0 bits (149), Expect(3) = 6e-45
 Identities = 50/166 (30%), Positives = 63/166 (37%), Gaps = 51/166 (30%)
 Frame = +3

Query: 2673 FFDPDNPTHVCKLNKAFYGLNQAPCIWFQTF-----------SK*STNFSMKH------- 2798
            F +P  PT+VCKL+KA YGL QAP  WFQ             S+  T+  + H       
Sbjct: 336  FVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILI 395

Query: 2799 ---------------------------------LGELHYFFGMKVTHVSAKNSILLTQSK 2879
                                             LG L YF G++   +   + + L Q K
Sbjct: 396  LLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLG--SVLHLNQHK 453

Query: 2880 YTLELLQRADMLDFKPCTIPVTHGPRVSVYDGELLPCPQEYRSLVG 3017
            Y  +LL R  M   KP   P   G  +S  DG  L  P EYR  VG
Sbjct: 454  YIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSEYRRTVG 499



 Score = 34.3 bits (77), Expect(3) = 6e-45
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 2086 SISPQSPILTDKSSSESPCPPELTILAPQHPMTIRSQHGVHKQK 2217
            SI P  P+    SS  +P PP L +    HPM  R++ G+HK++
Sbjct: 155  SIPPLIPVPFATSSPAAPSPPPLPLNT--HPMVTRAKSGIHKKR 196



 Score = 89.4 bits (220), Expect = 9e-15
 Identities = 42/104 (40%), Positives = 64/104 (61%)
 Frame = +2

Query: 1649 AYMPKSFCLDTFFTATFLINKTPSKLLAFKTPYEVLFQNAPDLSILTVYGCACFPFLGHS 1828
            +++P  +    F TA +LIN  P+KLL F++P + LF   P+   L V+GC CFP L   
Sbjct: 4    SFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPY 63

Query: 1829 RKDILSPKSSPCTFIGCRHLHKGYRCYEMSSNKLFISIHVIFDE 1960
             +  L  +S+ C F+G    HKGY C ++S+N+++IS +VIF E
Sbjct: 64   TQHKLCYRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHE 107