BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00022907
         (1110 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   241   e-126
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   244   e-125
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   250   e-125
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   234   e-122
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       247   e-122
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   237   e-120
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   237   e-120
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       240   e-120
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      236   e-120
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   243   e-119
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      238   e-119
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   233   e-119
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   237   e-119
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   236   e-118
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   236   e-118
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   238   e-118
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   230   e-118
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   234   e-118
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   234   e-118
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   236   e-118

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  241 bits (615), Expect(2) = e-126
 Identities = 127/192 (66%), Positives = 145/192 (75%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+RISF+DED +KI STDLS R +   +   T +Y RILSTL NG++IGD+KFEFLA
Sbjct: 402 IDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLA 461

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR +SAWMFAS+  LTAA IR+WMG+FR+IRNVAKYAARLGQSF SS ETLSV  
Sbjct: 462 FSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHM 521

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCT-PSAFQIRYGGYKGVV 537
                          T Y FSDGIGK+S+EFA KV SKCGLK   PSAFQIRYGGYKGVV
Sbjct: 522 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 581

Query: 538 AVDPRTVKKLYL 573
           A DP + KKL L
Sbjct: 582 AADPTSSKKLSL 593



 Score =  239 bits (609), Expect(2) = e-126
 Identities = 122/186 (65%), Positives = 149/186 (80%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S+K+        ++S++TKLDVL+WSK+QPCFLNRQ+ISLLSTLG+ D +FEKKQ+EAV
Sbjct: 587  SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 646

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
             QLD+ILTD LKA EALE+MSP E TNILKE+L+CGYKPD EPFLSMMLQTFRA+KLLEL
Sbjct: 647  RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 706

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RT+T IF+P GRSMMGCLDET  L YGQVFVQ+S  G  +L G+S S+ + +      +V
Sbjct: 707  RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES-SLFSSSRSRQRFIV 765

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 766  QGLVVV 771


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  244 bits (622), Expect(2) = e-125
 Identities = 122/173 (70%), Positives = 141/173 (81%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S+ T LDVLSWSK++PCFLNRQ+I+LLSTLGV D+VFEKKQ+EAVDQLD+IL D L+A
Sbjct: 583  YESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRA 642

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EALE+MSP E TNILKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+T IFVP GRS
Sbjct: 643  QEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRS 702

Query: 951  MMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLVLGKVVV 1109
            MMGCLDET  LEYG+VFVQ+S  G  +  GDS          D  ++ GKVVV
Sbjct: 703  MMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVV 755



 Score =  234 bits (597), Expect(2) = e-125
 Identities = 125/192 (65%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SF+DE+SEKI ST +S R  M++E + T +Y RILS L NG+VIGDKKF+FLA
Sbjct: 387 IDNFLRVSFLDENSEKIHSTVISPR--MSNEGRRTGVYRRILSILQNGIVIGDKKFDFLA 444

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
            S+SQLR NSAWMFAS+  LTAA IR  MGDF +IRNVAKYAARLGQSF SS ETL V++
Sbjct: 445 VSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAK 504

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLK-CTPSAFQIRYGGYKGVV 537
                        +GT Y FSDGIGKIS+E AH+V  KCG K  TPSAFQIRYGGYKGVV
Sbjct: 505 HEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVV 564

Query: 538 AVDPRTVKKLYL 573
           AVDP + +KL L
Sbjct: 565 AVDPTSSRKLSL 576


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  250 bits (639), Expect(2) = e-125
 Identities = 132/192 (68%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EKI STD+S R +  +E + T +Y RILSTL NG+VIGDKKFEFLA
Sbjct: 398 IDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLA 457

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTAA IR WMG F KIRNVA+YAARLGQSFGSSTETLSVS 
Sbjct: 458 FSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSS 517

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLK-CTPSAFQIRYGGYKGVV 537
                         GT Y FSDGIGKIS+EFA KV  KCG K  TPSAFQIRY GYKGVV
Sbjct: 518 HEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVV 577

Query: 538 AVDPRTVKKLYL 573
           AVDP + KKL L
Sbjct: 578 AVDPTSSKKLSL 589



 Score =  225 bits (573), Expect(2) = e-125
 Identities = 119/186 (63%), Positives = 145/186 (77%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S+K+        ++S+ TKLDVL+ SK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+EAV
Sbjct: 583  SSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAV 642

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD++LTD L+A EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLEL
Sbjct: 643  DQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLEL 702

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RT+T IF+P GRSMMGCLDET  LE+GQVFV+ S   R +   DS  M +  G     L+
Sbjct: 703  RTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSG-SRFRNLYDSSDMFSERGRGQCYLI 761

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 762  KGSVVV 767


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  234 bits (597), Expect(2) = e-122
 Identities = 124/192 (64%), Positives = 143/192 (74%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SF+DE+ EKI ST +S R  M+ E + T +Y RILS L NG+VIGDKKF+FLA
Sbjct: 389 IDNFLRVSFLDENLEKIHSTVISPR--MSKEGRRTGVYRRILSILQNGIVIGDKKFDFLA 446

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NSAWMFAS+  LTAA IR WMGDF +IRNVAKYAARLGQSF SS ETL V++
Sbjct: 447 FSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAK 506

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLK-CTPSAFQIRYGGYKGVV 537
                          T Y FSDGIGKIS + AH+V  KCG K  TPSAFQIRYGGYKGVV
Sbjct: 507 DEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVV 566

Query: 538 AVDPRTVKKLYL 573
           AVDP + +KL L
Sbjct: 567 AVDPTSSRKLSL 578



 Score =  234 bits (596), Expect(2) = e-122
 Identities = 117/173 (67%), Positives = 137/173 (79%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S  T LDVL+WSK+QP FLNRQ+I+LLSTLGV D+VFEKKQ+ AVDQLD+IL D + A
Sbjct: 585  YESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAA 644

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EALE+MSP E TN+LKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+T IFVP GRS
Sbjct: 645  QEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRS 704

Query: 951  MMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLVLGKVVV 1109
            MMGCLDET  LEYG+VFVQ+S  G  +  GDS          D  ++ GK+VV
Sbjct: 705  MMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVV 757


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  247 bits (630), Expect(2) = e-122
 Identities = 129/191 (67%), Positives = 149/191 (78%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           I+NF+R+SFVDE+ EKI STDL  RA+  +  + T +YERILSTL NG +IGDK+FEFLA
Sbjct: 388 INNFLRVSFVDEEWEKIHSTDLLPRASTGNGTR-TDIYERILSTLRNGFIIGDKRFEFLA 446

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDFR+IRNVAKYAARLGQSFGSS ETLSV R
Sbjct: 447 FSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGR 506

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FAH+VT KCGL+ TPS+FQIRYGGYKGVVA
Sbjct: 507 HEVEVIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYTPSSFQIRYGGYKGVVA 566

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 567 VDPYSSMKLSL 577



 Score =  220 bits (561), Expect(2) = e-122
 Identities = 112/173 (64%), Positives = 132/173 (76%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S   KLDVL WSK+QPC+LNRQ+++LLSTLGV D V E+KQ EAVDQLD+IL D LKA
Sbjct: 584  YESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKA 643

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EALE+MSP E TNILKEML CGY PD EPFLSMMLQTFRA+KLL+LRTRT IF+P GR+
Sbjct: 644  QEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRT 703

Query: 951  MMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLVLGKVVV 1109
            MMGCLDE+  LEYGQVFVQ S  GR +   +S    +        ++ G VVV
Sbjct: 704  MMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVV 756


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
           gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
           [Nicotiana glutinosa]
          Length = 1117

 Score =  237 bits (605), Expect(2) = e-120
 Identities = 127/191 (66%), Positives = 144/191 (75%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EKI STDL  RA+  +  + T +Y RILSTL NG VIGDKKFEFLA
Sbjct: 389 IDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVR-TDIYLRILSTLRNGFVIGDKKFEFLA 447

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMG F++IRNVAKYAARLGQSFGSS ETLSV R
Sbjct: 448 FSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGR 507

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V  KCGL+ TPS FQIRYGGYKGVVA
Sbjct: 508 HEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGYKGVVA 567

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 568 VDPYSSMKLSL 578



 Score =  222 bits (566), Expect(2) = e-120
 Identities = 115/174 (66%), Positives = 137/174 (78%), Gaps = 1/174 (0%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S   KLDVL WSK+QPC+LNRQ+++LLSTLGV D VFE+KQ EAVDQLD+IL D LKA
Sbjct: 585  YESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKA 644

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EALE+MSP E TNILKEML CGY PD EPFLSMMLQTFRA+KLL+LRTR+ IF+P GR+
Sbjct: 645  QEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRT 704

Query: 951  MMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLVL-GKVVV 1109
            MMGCLDE+  LEYGQVFVQ +  GR +   +S    N +G T+   +L G VVV
Sbjct: 705  MMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHP-FNDSGSTNCDFILEGNVVV 757


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
           gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
           [Solanum lycopersicum]
          Length = 1114

 Score =  237 bits (604), Expect(2) = e-120
 Identities = 127/191 (66%), Positives = 144/191 (75%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ STDL  +A+     + T +YERILSTL  G VIGDKKFEFLA
Sbjct: 388 IDNFLRVSFVDEEWEKLYSTDLLPKASTGSGVR-TNIYERILSTLRKGFVIGDKKFEFLA 446

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSS ETLSV R
Sbjct: 447 FSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLR 506

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS +FAH+V SKCGL+ TPSAFQIRYGGYKGVV 
Sbjct: 507 HEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVG 564

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 565 VDPDSSMKLSL 575



 Score =  223 bits (567), Expect(2) = e-120
 Identities = 114/186 (61%), Positives = 136/186 (73%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPC+LNRQ+I+LLSTLGV D V E+KQKEAV
Sbjct: 569  SSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAV 628

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E TNILK ML CGYKPD EPFLSMMLQTFRA+KLL+L
Sbjct: 629  DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDL 688

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RTR+ IF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 689  RTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFIL 748

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 749  KGNVVV 754


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  240 bits (612), Expect(2) = e-120
 Identities = 130/191 (68%), Positives = 146/191 (76%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EKI S DL  RA  N  +  T +YERILSTL NG+VIG KKFEFLA
Sbjct: 82  IDNFLRVSFVDEEWEKIFSMDLLPRANRNGIR--TDIYERILSTLQNGLVIGAKKFEFLA 139

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF++IRNVAKYAARLGQSFGSS ETLSV R
Sbjct: 140 FSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIRNVAKYAARLGQSFGSSRETLSVGR 199

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FAH+V  KCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 200 HEIKYIPDVEV--HGTNYVFSDGIGKISADFAHRVAKKCGLQHTPSAFQIRYGGYKGVVA 257

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 258 VDPYSPMKLSL 268



 Score =  219 bits (558), Expect(2) = e-120
 Identities = 110/173 (63%), Positives = 133/173 (76%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S  TKLDVL WSK+QPC+LNRQ+++L+STLGV D VF++KQ EAV QLD+IL D LKA
Sbjct: 275  YESNNTKLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKA 334

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EAL++MSP E TNILKEML CGY PD EPFLSMMLQTFRA+KLL+LRTRT IF+PKGRS
Sbjct: 335  QEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRS 394

Query: 951  MMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLVLGKVVV 1109
            MMGCLDE+  LEYGQVFVQ +  G  +   +S    +        ++ G VVV
Sbjct: 395  MMGCLDESRTLEYGQVFVQFTGAGGRQFYEESHHFNDSGSANYNFILKGNVVV 447


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  236 bits (601), Expect(2) = e-120
 Identities = 126/192 (65%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+RISFVDE+ EKI ST++ AR       + T +Y+RILSTL NG+VIG+K+FEFLA
Sbjct: 397 IDNFLRISFVDEELEKIHSTNVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLA 450

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NSAWMFAS+  LTAA IR WMG+F KIRNVAKYAARLGQSF SSTETLSVS+
Sbjct: 451 FSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSK 510

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLK-CTPSAFQIRYGGYKGVV 537
                        +G  Y F DGIGKIS+EFA KV +KC LK CTPSAFQIR GG+KGVV
Sbjct: 511 DEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVV 570

Query: 538 AVDPRTVKKLYL 573
           A+DP +  KL L
Sbjct: 571 AIDPTSSWKLSL 582



 Score =  223 bits (567), Expect(2) = e-120
 Identities = 109/141 (77%), Positives = 125/141 (88%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S+ TKLDVL+WSK+QPCFLNRQ+I+LLSTLGV DY FEKKQ+E VDQL+++LTD L+A
Sbjct: 589  YESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEA 648

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+TFRA+KLLELRT+  IFV KGRS
Sbjct: 649  QEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRS 708

Query: 951  MMGCLDETANLEYGQVFVQVS 1013
            MMGCLDET  L YGQVFVQ S
Sbjct: 709  MMGCLDETRTLNYGQVFVQFS 729


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  243 bits (620), Expect(2) = e-119
 Identities = 127/192 (66%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ +K+ STDLS R    DE K T LYER++S L +GV IGD+KF+FLA
Sbjct: 388 IDNFLRVSFVDEEWDKMYSTDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLA 447

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFA    L A  IR+WMGDF  IRNVAKYAARLGQSFGSSTETLSVS+
Sbjct: 448 FSSSQLRDNSLWMFAPTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSK 507

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLK-CTPSAFQIRYGGYKGVV 537
                        NGT YTFSDGIGKIS +FA +V +KCG++  TPSAFQIRYGGYKGVV
Sbjct: 508 ---REIEEIQDVKNGTEYTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVV 564

Query: 538 AVDPRTVKKLYL 573
           AVDP + KKL L
Sbjct: 565 AVDPSSKKKLSL 576



 Score =  215 bits (547), Expect(2) = e-119
 Identities = 109/173 (63%), Positives = 134/173 (77%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S  TKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D+VFEK+Q+EAV QLD +L D ++A
Sbjct: 583  YQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRA 642

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EAL++MSP E T+ILKEML CGY+PD EPFLSMMLQTFRA+KLL+LR +  +F+PK R 
Sbjct: 643  QEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQ 702

Query: 951  MMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLVLGKVVV 1109
            MMGCLDET  L+YGQVFV+ S   +  L  DS+     N   D   V GKVVV
Sbjct: 703  MMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDP--VRGKVVV 753


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  238 bits (606), Expect(2) = e-119
 Identities = 127/192 (66%), Positives = 147/192 (76%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+RISFVDE+ EKI ST++ AR       + T +Y+RILSTL NG+VIG+K+FEFLA
Sbjct: 397 IDNFLRISFVDEELEKIHSTNVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLA 450

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NSAWMFAS+  LTAA IR WMG+F KIRNVAKYAARLGQSF SSTETLSVS+
Sbjct: 451 FSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSK 510

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLK-CTPSAFQIRYGGYKGVV 537
                        +G  Y FSDGIGKIS+EFA KV +KC LK CTPSAFQIR GG+KGVV
Sbjct: 511 DEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVV 570

Query: 538 AVDPRTVKKLYL 573
           A+DP +  KL L
Sbjct: 571 AIDPTSSWKLSL 582



 Score =  219 bits (558), Expect(2) = e-119
 Identities = 108/141 (76%), Positives = 124/141 (87%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            ++S+ TKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D  FEKKQ+E VDQL+++LTD L+A
Sbjct: 589  YESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEA 648

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
             EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+TFRA+KLLELRT+  IFV KGRS
Sbjct: 649  QEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRS 708

Query: 951  MMGCLDETANLEYGQVFVQVS 1013
            MMGCLDET  L YGQVFVQ S
Sbjct: 709  MMGCLDETRTLNYGQVFVQFS 729


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  233 bits (593), Expect(2) = e-119
 Identities = 128/192 (66%), Positives = 142/192 (73%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1    IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
            IDNF+RISF+DED   IRSTDLS R     E+KHT +Y R+LSTL NG+VIGDKKFEFLA
Sbjct: 472  IDNFLRISFIDEDFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLA 531

Query: 181  FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
            FS+SQLR NSAWMF+    +TAA+IR WMGDF  IRNVAK AAR+GQSFGSSTETL+V  
Sbjct: 532  FSSSQLRDNSAWMFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVK- 590

Query: 361  XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGL-KCTPSAFQIRYGGYKGVV 537
                         NG  Y FSDGIGKIS EFA KV  KCG  + TPSAFQIRYGGYKGVV
Sbjct: 591  --PEEVERISDIKNGK-YVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVV 647

Query: 538  AVDPRTVKKLYL 573
            AVDP +  KL L
Sbjct: 648  AVDPTSRYKLSL 659



 Score =  223 bits (568), Expect(2) = e-119
 Identities = 115/174 (66%), Positives = 133/174 (76%), Gaps = 1/174 (0%)
 Frame = +3

Query: 591  FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAVDQLDSILTDLLKA 770
            + S  TKLDVL++SKFQPCFLNRQVI+LLSTLGV D VFE KQK+AV QLD IL D   A
Sbjct: 666  YSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESA 725

Query: 771  YEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTWIFVPKGRS 950
            +EALE+MSP E  N+LKEML CGY PD EPFLSMMLQTFR  KL EL+T+T IF+P GRS
Sbjct: 726  FEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRS 785

Query: 951  MMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTV-LVLGKVVV 1109
            MMGCLDET  LEYGQVFVQ S +G  +L     S +N +G    V +V+GKV+V
Sbjct: 786  MMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIV 839


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  237 bits (604), Expect(2) = e-119
 Identities = 127/191 (66%), Positives = 147/191 (76%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ ST+L  +A+  +  + T +YERILSTL  G VIGDKKFEFLA
Sbjct: 236 IDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLA 294

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSSTETLSV R
Sbjct: 295 FSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLR 354

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V SKCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 355 HEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVA 412

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 413 VDPYSSMKLSL 423



 Score =  218 bits (556), Expect(2) = e-119
 Identities = 112/186 (60%), Positives = 135/186 (72%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPCFLNRQ+I+LLSTLGV D + E+KQKEAV
Sbjct: 417  SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVKDDILEQKQKEAV 476

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KLL+L
Sbjct: 477  DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 536

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RT++ IF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 537  RTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 596

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 597  KGNVVV 602


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  236 bits (602), Expect(2) = e-118
 Identities = 127/191 (66%), Positives = 146/191 (76%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ STDL  +A+  +  + T +YERILSTL  G VIGDKKFEFLA
Sbjct: 354 IDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLA 412

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSS ETLSV R
Sbjct: 413 FSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLR 472

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V SKCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 473 HEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVA 530

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 531 VDPYSSMKLSL 541



 Score =  218 bits (556), Expect(2) = e-118
 Identities = 112/186 (60%), Positives = 135/186 (72%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPC+LNRQ+++LLSTLGV D V E+KQKEAV
Sbjct: 535  SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAV 594

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KLL+L
Sbjct: 595  DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 654

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RTR+ IF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 655  RTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 714

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 715  KGNVVV 720


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  236 bits (602), Expect(2) = e-118
 Identities = 127/191 (66%), Positives = 146/191 (76%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ STDL  +A+  +  + T +YERILSTL  G VIGDKKFEFLA
Sbjct: 388 IDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLA 446

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSS ETLSV R
Sbjct: 447 FSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLR 506

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V SKCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 507 HEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVA 564

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 565 VDPYSSMKLSL 575



 Score =  218 bits (556), Expect(2) = e-118
 Identities = 112/186 (60%), Positives = 135/186 (72%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPC+LNRQ+++LLSTLGV D V E+KQKEAV
Sbjct: 569  SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAV 628

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KLL+L
Sbjct: 629  DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 688

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RTR+ IF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 689  RTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 748

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 749  KGNVVV 754


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
           tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
           tuberosum]
          Length = 1115

 Score =  238 bits (608), Expect(2) = e-118
 Identities = 128/191 (67%), Positives = 147/191 (76%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ STDL  +A+  +  + T +YERILSTL  G VIGDKKFEFLA
Sbjct: 388 IDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLA 446

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSSTETLSV R
Sbjct: 447 FSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLR 506

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V SKCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 507 HEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQHTPSAFQIRYGGYKGVVA 564

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 565 VDPYSSMKLSL 575



 Score =  215 bits (548), Expect(2) = e-118
 Identities = 111/186 (59%), Positives = 134/186 (72%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPC+LNRQ+++LLSTLGV D V E+KQKEAV
Sbjct: 569  SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAV 628

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KLL+L
Sbjct: 629  DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 688

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RT++ IF+P GR MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 689  RTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFIL 748

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 749  KGNVVV 754


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  230 bits (586), Expect(2) = e-118
 Identities = 126/192 (65%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+RI+FVDE+ EKI STDL  R       + T +Y RILSTL NG+VIGDK+FEFLA
Sbjct: 397 IDNFLRITFVDEELEKIHSTDLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLA 450

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NSAWMFAS+  LTAA IR WMG+F KIRNVAKYAARLGQSF SSTETLSV++
Sbjct: 451 FSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAK 510

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLK-CTPSAFQIRYGGYKGVV 537
                        +G  Y FSDGIGKIS++FA KV +KC L   TPSAFQIR GG+KGVV
Sbjct: 511 DEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVV 570

Query: 538 AVDPRTVKKLYL 573
           AVDP + KKL L
Sbjct: 571 AVDPTSSKKLSL 582



 Score =  224 bits (570), Expect(2) = e-118
 Identities = 118/186 (63%), Positives = 142/186 (76%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S+K+      + ++S+ TKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+E V
Sbjct: 576  SSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVV 635

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQL++ILTD LKA EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLEL
Sbjct: 636  DQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLEL 695

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RT++ IFV  GRSMMGCLDET  L+YGQVFVQVS                G+      +V
Sbjct: 696  RTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVS----------------GSRSEQRFIV 739

Query: 1092 LGKVVV 1109
             GKVVV
Sbjct: 740  QGKVVV 745


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  234 bits (598), Expect(2) = e-118
 Identities = 126/191 (65%), Positives = 146/191 (76%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ ST+L  +A+  +  + T +YERILSTL  G VIGDKKFEFLA
Sbjct: 236 IDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLA 294

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSS ETLSV R
Sbjct: 295 FSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLR 354

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V SKCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 355 HEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVA 412

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 413 VDPYSSMKLTL 423



 Score =  218 bits (556), Expect(2) = e-118
 Identities = 112/186 (60%), Positives = 135/186 (72%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPCFLNRQ+I+LLSTLGV D + E+KQKEAV
Sbjct: 417  SSMKLTLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVRDDILEQKQKEAV 476

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KLL+L
Sbjct: 477  DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 536

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RT++ IF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 537  RTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 596

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 597  KGNVVV 602


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  234 bits (596), Expect(2) = e-118
 Identities = 126/191 (65%), Positives = 145/191 (75%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ STDL  +A+  +  + T +Y RILSTL  G VIGDKKFEFLA
Sbjct: 388 IDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYVRILSTLQKGFVIGDKKFEFLA 446

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSS ETLSV R
Sbjct: 447 FSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLR 506

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V SKCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 507 HEIEIIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVA 564

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 565 VDPYSSMKLSL 575



 Score =  219 bits (557), Expect(2) = e-118
 Identities = 113/186 (60%), Positives = 135/186 (72%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPCFLNRQ+++LLSTLGV D V E+KQKEAV
Sbjct: 569  SSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAV 628

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KLL+L
Sbjct: 629  DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 688

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RTR+ IF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 689  RTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFIL 748

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 749  KGNVVV 754


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  236 bits (602), Expect(2) = e-118
 Identities = 127/191 (66%), Positives = 146/191 (76%)
 Frame = +1

Query: 1   IDNFIRISFVDEDSEKIRSTDLSARATMNDEKKHTLLYERILSTLHNGVVIGDKKFEFLA 180
           IDNF+R+SFVDE+ EK+ STDL  +A+  +  + T +YERILSTL  G VIGDKKFEFLA
Sbjct: 380 IDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLA 438

Query: 181 FSASQLRGNSAWMFASKGSLTAASIRDWMGDFRKIRNVAKYAARLGQSFGSSTETLSVSR 360
           FS+SQLR NS WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSS ETLSV R
Sbjct: 439 FSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLR 498

Query: 361 XXXXXXXXXXXXSNGTVYTFSDGIGKISSEFAHKVTSKCGLKCTPSAFQIRYGGYKGVVA 540
                        +GT Y FSDGIGKIS++FA +V SKCGL+ TPSAFQIRYGGYKGVVA
Sbjct: 499 HEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVA 556

Query: 541 VDPRTVKKLYL 573
           VDP +  KL L
Sbjct: 557 VDPYSSMKLSL 567



 Score =  216 bits (550), Expect(2) = e-118
 Identities = 111/186 (59%), Positives = 134/186 (72%)
 Frame = +3

Query: 552  NSEKVIFETKHA*FKSKVTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYVFEKKQKEAV 731
            +S K+      + ++S   KLDVL WSK+QPC+LNRQ+++LLSTLGV D V E+KQKEAV
Sbjct: 561  SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAV 620

Query: 732  DQLDSILTDLLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLEL 911
            DQLD+IL D LKA EALE+MSP E T ILK ML CGY PD EPFLSMMLQTFRA+KLL+L
Sbjct: 621  DQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 680

Query: 912  RTRTWIFVPKGRSMMGCLDETANLEYGQVFVQVSRVGRNKLCGDSFSMLNGNGPTDTVLV 1091
            RTR+ IF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D     N        ++
Sbjct: 681  RTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 740

Query: 1092 LGKVVV 1109
             G VVV
Sbjct: 741  KGNVVV 746