BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00022906
         (1736 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   638   e-180
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   635   e-179
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   626   e-176
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       619   e-174
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   618   e-174
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   618   e-174
ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prun...   613   e-173
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   611   e-172
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   609   e-171
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   605   e-170
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   602   e-169
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   602   e-169
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   599   e-168
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      599   e-168
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   595   e-167
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   593   e-167
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   592   e-166
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      588   e-165
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   583   e-164
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   582   e-163

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  638 bits (1645), Expect = e-180
 Identities = 306/444 (68%), Positives = 361/444 (81%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELRT+TRIF+P GRSMMGCLDET  L YGQVFVQ+S  G  +L G+SS
Sbjct: 693  MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 752

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
             + + +      +V G VVVAKNPCLHPGD+RVL+AVNVPALHHMVDCVVFPQKG RPHP
Sbjct: 753  -LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 811

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP +Q  PMDY  + +++L HDVQIE+VEEYF NY++ND
Sbjct: 812  NECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVND 871

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HT FAD+E  KA S+ C++LA+ FSIAVDFPKTGVPAEIPPHL VKEYPDFM
Sbjct: 872  SLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFM 931

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+PTYES+ V+GKLFR VKDIAPHTS I+ FT EVA++ +D DMEVDG ED+++DA 
Sbjct: 932  EKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAI 991

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             HKG +DYKL NLMDYYGIKTEAEIL GS+MK+SKSF  RRDAE+I +AVRAL+KEAR W
Sbjct: 992  YHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAW 1051

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F +K    SGS  +D  YAKASAWY+VTYHP Y GCY+   +R+HFLSFPWCVYD+L+ I
Sbjct: 1052 FKEK----SGSDTEDDAYAKASAWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEI 1107

Query: 474  KKNNSMRRKHNQSLEDQFTSSLRL 403
            KK+ +       +LE QF   LR+
Sbjct: 1108 KKDKTSIGNAFPALEQQFRQGLRM 1131


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  635 bits (1637), Expect = e-179
 Identities = 309/446 (69%), Positives = 360/446 (80%), Gaps = 2/446 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRAAKLLELRT+TRIFVP GRSMMGCLDET  LEYG+VFVQ+S  G  +  GDS 
Sbjct: 678  MMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSL 737

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                     D  ++ GK+VVAKNPCLHPGD+RVL AVNVP LHHMVDCVVFPQKG+RPHP
Sbjct: 738  MFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHP 797

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD++LIP +Q+ PMDY  +P   L HDV IEEVEEYF NY++ND
Sbjct: 798  NECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVND 857

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HT FADKE  KA    C ELAKLFSIAVDFPKTGVPAEIP +LRVKEYPDFM
Sbjct: 858  SLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFM 917

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+PTYES+ V+GKLFR+VKDIAPH  +I+SFT +VA++ +D DMEV G EDY+ DAF
Sbjct: 918  EKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAF 977

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K E+DYKL NLMDYYGIKTE+EIL GS+M++SKSF+ R+DAE+I LAV++L+KEARTW
Sbjct: 978  YYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTW 1037

Query: 654  FDKK-SRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIH 478
            F+K  S T+S   E D +YAKASAWY+VTYHP Y GCY++   R+HFLSFPWCVYDKLIH
Sbjct: 1038 FNKMGSETDS---EADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIH 1094

Query: 477  IK-KNNSMRRKHNQSLEDQFTSSLRL 403
             K K  S R  H  SLE + +  LRL
Sbjct: 1095 TKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  626 bits (1614), Expect = e-176
 Identities = 304/448 (67%), Positives = 365/448 (81%), Gaps = 3/448 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELRT+TRIF+P GRSMMGCLDET  LE+GQVFV+ S   R +   DSS
Sbjct: 689  MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSG-SRFRNLYDSS 747

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
             M +  G     L+ G VVVAKNPCLHPGD+R+L+AV+VPALHHMVDCVVFPQKG RPHP
Sbjct: 748  DMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHP 807

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP +Q+ PMDY   P ++L HDV IEEVEEYF NY++ND
Sbjct: 808  NECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVND 867

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLGVIAN HTA ADKE LKA S+ C+ELA+ FSIAVDFPKTGVPAEIP +LR +EYPDFM
Sbjct: 868  SLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFM 927

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+P+YES+ V+GKLFR+VKDIAP TS I+SFT +VA++ +D DMEVDG EDY++DAF
Sbjct: 928  EKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAF 987

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K  +DYKL NLM+YYGIKTEAE+L GS MK+SKSF  +RDAE+I +AVR+LKKEAR+W
Sbjct: 988  YYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSW 1047

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F++K  +   SQ DD + AKASAWY+VTYH +Y GCY++  +R+HFLSFPWCVYDKLI I
Sbjct: 1048 FNEKG-SGLDSQADD-VDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQI 1105

Query: 474  KKNNSMRRKHN---QSLEDQFTSSLRLS 400
            K+ NS R + +    S+E QF+  L LS
Sbjct: 1106 KRRNSARIRRSLILPSVERQFSRGLHLS 1133


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  619 bits (1596), Expect = e-174
 Identities = 298/446 (66%), Positives = 356/446 (79%), Gaps = 2/446 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQ FRA+KL ELRT+TRI +P GR+MMGCLDE   LEYG+VFVQ S +       DS 
Sbjct: 690  MMLQAFRASKLQELRTKTRISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSF 749

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
             ML G G     +V+G+VVVAKNPCLHPGD+RVL+AVNVPALHHMVDCVVFPQKG RPHP
Sbjct: 750  -MLGGTGSGQNYIVVGRVVVAKNPCLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHP 808

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP +Q EPMDY  +P   L HDV+IEEV+EYF NY++ND
Sbjct: 809  NECSGSDLDGDIYFVCWDDELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVND 868

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HTAFADKE  KA S  CIELA+LFSIAVDFPKTGVPA IP  L VKEYPDFM
Sbjct: 869  SLGIIANAHTAFADKEPSKAMSPSCIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFM 928

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EKL++PTYES+ V+GKLFR+VKDIAP+   +  FT EVA + +D DME DG EDY++DAF
Sbjct: 929  EKLNKPTYESQNVIGKLFREVKDIAPNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAF 988

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K  +DYKL NL+DYYGIK+EAEI+GGS+M++SKSF  RRDAESI++AVRAL+KEARTW
Sbjct: 989  YYKSNYDYKLGNLLDYYGIKSEAEIIGGSIMRMSKSFTKRRDAESINMAVRALRKEARTW 1048

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F++K  +   + +D  +YAKASAWYYVTYH SY GCY++  +R+H+LSFPWCVYDKL+ I
Sbjct: 1049 FNEKGSSLDSAADD--VYAKASAWYYVTYHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQI 1106

Query: 474  KKNNSMRRKHNQ--SLEDQFTSSLRL 403
            K++ +  R+  Q  SLE  F   L L
Sbjct: 1107 KRSKASVRRSLQMSSLERAFDRRLHL 1132


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  618 bits (1594), Expect = e-174
 Identities = 303/446 (67%), Positives = 355/446 (79%), Gaps = 2/446 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRAAKLLELRT+TRIFVP GRSMMGCLDET  LEYG+VFVQ+S  G  +  GDS 
Sbjct: 220  MMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSL 279

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                     D  ++ GK+VVAKNPCLHPGD+RVL AVNVP LHHMVDCVVFPQKG+RPHP
Sbjct: 280  MFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHP 339

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD++LIP +Q+ PMDY  +P          +EVEEYF NY++ND
Sbjct: 340  NECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPT---------KEVEEYFTNYIVND 390

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HT FADKE  KA    C ELAKLFSIAVDFPKTGVPAEIP +LRVKEYPDFM
Sbjct: 391  SLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFM 450

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+PTYES+ V+GKLFR+VKDIAPH  +I+SFT +VA++ +D DMEV G EDY+ DAF
Sbjct: 451  EKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAF 510

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K E+DYKL NLMDYYGIKTE+EIL GS+M++SKSF+ R+DAE+I LAV++L+KEARTW
Sbjct: 511  YYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTW 570

Query: 654  FDKK-SRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIH 478
            F+K  S T+S   E D +YAKASAWY+VTYHP Y GCY++   R+HFLSFPWCVYDKLIH
Sbjct: 571  FNKMGSETDS---EADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIH 627

Query: 477  IK-KNNSMRRKHNQSLEDQFTSSLRL 403
             K K  S R  H  SLE + +  LRL
Sbjct: 628  TKRKKMSGRSLHLSSLERRLSQGLRL 653


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  618 bits (1593), Expect = e-174
 Identities = 297/446 (66%), Positives = 359/446 (80%), Gaps = 2/446 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELRT++RIF+P GR+MMGCLDET  LEYGQVFVQ+S  GR++   +S 
Sbjct: 687  MMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISS-GRHRNLSESF 745

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
            +  N  G    +++ G V VAKNPCLHPGD+RVL+AVN+P L+HMVDCVVFPQKG RPHP
Sbjct: 746  AF-NRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHP 804

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP RQ+ PMDY  +P  EL  DV  E+++EYF NYM+ND
Sbjct: 805  NECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVND 864

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HTAFADKE  KA S  C+ELAKLFS+AVDFPKTGVPA IP HL VKE+PDFM
Sbjct: 865  SLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFM 924

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK DRP+YES +V+GKLFR VKDIAP  SHI+SFT +VA++ +D DMEV+G EDY+EDAF
Sbjct: 925  EKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAF 984

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             HK  +DYKL NL+DYYGIK+EAE+L GS+M++SKSF  RRDAE+I+LAVR+L+KEARTW
Sbjct: 985  YHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTW 1044

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F+ +   +S S   D ++AKASAWYYVTYH SY GCY++   R+H+LSFPWCVYDKL+ I
Sbjct: 1045 FNAREGADSNS---DDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQI 1101

Query: 474  KKNNSMRRKHNQSLE--DQFTSSLRL 403
            K+NN  RR+    L   D+F   L L
Sbjct: 1102 KENNLRRRERAARLASFDRFGHVLNL 1127


>ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
            gi|462422197|gb|EMJ26460.1| hypothetical protein
            PRUPE_ppa001524mg [Prunus persica]
          Length = 808

 Score =  613 bits (1580), Expect = e-173
 Identities = 300/447 (67%), Positives = 360/447 (80%), Gaps = 2/447 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELRT+TRI +P GR+MMGCLDET  LEYG+VFVQ S  G+  +  +S+
Sbjct: 375  MMLQTFRASKLLELRTKTRILIPDGRAMMGCLDETRTLEYGEVFVQFS--GKRHIGSESN 432

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                        ++ GKVVVAKNPCLHPGD+RVL+AV+VP L+HMVDCVVFPQKG RPHP
Sbjct: 433  QQF---------IIEGKVVVAKNPCLHPGDVRVLKAVDVPELYHMVDCVVFPQKGPRPHP 483

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP RQ++PMDY  +P I L H V IEEVEEYF NYM+ND
Sbjct: 484  NECSGSDLDGDIYFVCWDDELIPSRQIQPMDYTPAPTIALDHAVTIEEVEEYFVNYMVND 543

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HTAFAD++  KA SK CIELAKLFSIAVDFPKTGVPA IP HLRVKE+PDFM
Sbjct: 544  SLGIIANAHTAFADRQPSKAMSKPCIELAKLFSIAVDFPKTGVPAIIPQHLRVKEFPDFM 603

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+PTY+S  V+G+LFR+VKD+ PH   I+SF+ EVA++ +D DMEVDG EDY+EDAF
Sbjct: 604  EKPDKPTYQSCNVIGELFREVKDVEPHDGSIRSFSREVARQSYDRDMEVDGFEDYIEDAF 663

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K  +D  L NL+DYYGIKTEAEIL GSVMK+SKSF  RRD + I++AVR+L+KEARTW
Sbjct: 664  YYKSNYDSILGNLLDYYGIKTEAEILSGSVMKMSKSFTKRRDIDPINMAVRSLRKEARTW 723

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F++K+ T   S  DD +YAKASAWY+VTYHP Y GCY++  +R+HF+SFPWCVYDKL+HI
Sbjct: 724  FNEKA-TGLDSGADD-VYAKASAWYHVTYHPKYFGCYNEGLNRDHFISFPWCVYDKLVHI 781

Query: 474  KKNN-SMRRKHN-QSLEDQFTSSLRLS 400
            KK   S+RR  N  SLE +F + L L+
Sbjct: 782  KKEKASVRRARNLSSLERRFRNDLHLN 808


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  611 bits (1575), Expect = e-172
 Identities = 291/444 (65%), Positives = 351/444 (79%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLL+LR + R+F+PK R MMGCLDET  L+YGQVFV+ S   +  L  DS 
Sbjct: 676  MMLQTFRASKLLDLRVKARVFIPKARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSY 735

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                 N   D V   GKVVVAKNPCLHPGD+RVL AV+VP L HMVDCVVFP+ G+RPHP
Sbjct: 736  DNSTANERFDPVR--GKVVVAKNPCLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHP 793

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD +LIP +QVEPMDY+ +P   L HDV IEEVE+YF NY++ND
Sbjct: 794  NECSGSDLDGDIYFVCWDSDLIPTKQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVND 853

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HT FADKE L A S+ C+ELA+LFSIAVDF KTG+PAEIPPHLRVKEYPDFM
Sbjct: 854  SLGIIANAHTVFADKEPLMALSEPCLELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFM 913

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+  Y S RV+GKLFR+VKDIAP TS  +SFT EVA++ +D DMEVDG ED++++AF
Sbjct: 914  EKPDKINYASSRVIGKLFREVKDIAPQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAF 973

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
            LHK E+DYKL NLM+YYG+KTEAE+L G +MK+SK+F+ R+DAE+I  AVR+L+ EAR+W
Sbjct: 974  LHKTEYDYKLGNLMEYYGVKTEAEVLSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSW 1033

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F K      G++ DD +YAKASAWYYVTYHP Y GCY++   R+H+LSFPWCVYDKL+ I
Sbjct: 1034 FKK------GTEADD-VYAKASAWYYVTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKI 1086

Query: 474  KKNNSMRRKHNQSLEDQFTSSLRL 403
            KK+NS R     SL  QF   +R+
Sbjct: 1087 KKDNSRRASQMASLRRQFNDRVRI 1110


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  609 bits (1571), Expect = e-171
 Identities = 299/447 (66%), Positives = 355/447 (79%), Gaps = 2/447 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELRT+TRIF+P GR+MMGCLDET  LEYGQVFVQ S   R +L  D  
Sbjct: 680  MMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDIC 739

Query: 1554 SMLNGNGPADTVLVL-GKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPH 1378
                 +   D+  ++ GKVVVAKNPCLHPGD+RVL+AVNVP LHHMVDCVVFPQKG RPH
Sbjct: 740  I----HSSLDSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPH 795

Query: 1377 PNECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIN 1198
            PNECSGSDLDGD+YFVCWD ELIP +Q++PMDY  +P IE+  DV IEEVEEYF NY++N
Sbjct: 796  PNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVN 855

Query: 1197 DSLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDF 1018
            DSLG+IAN HT FAD +  KA S  C++LAKLFSIAVDFPKTGVPAEIPP L  KEYPDF
Sbjct: 856  DSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDF 915

Query: 1017 MEKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDA 838
            MEK D+ TY S  V+G+LFR+VKDIAPH S I SFT +VA K +D DMEVDG EDYLEDA
Sbjct: 916  MEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDA 975

Query: 837  FLHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEART 658
            F HKG +DYKL N++DYYGIKTEAEIL GS+M LSKSF  RRDA++I++AV++L+KEAR 
Sbjct: 976  FYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSKSFTKRRDADAINVAVKSLRKEARA 1035

Query: 657  WFDKK-SRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLI 481
            WF++K +  +SG   DD +YAKASAWY+VTYHP+Y G Y++  +R HF+SFPWCV+DKL 
Sbjct: 1036 WFNEKDTGIDSG---DDDVYAKASAWYHVTYHPNYFGLYNEGMNRAHFISFPWCVFDKLG 1092

Query: 480  HIKKNNSMRRKHNQSLEDQFTSSLRLS 400
            HIKK    + +   SLE++    LR S
Sbjct: 1093 HIKKEKVNQARLISSLENRLRYGLRFS 1119


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  605 bits (1560), Expect = e-170
 Identities = 295/441 (66%), Positives = 350/441 (79%), Gaps = 1/441 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRAAKLLELRT+TRIFVP GRSMMGCLDET  LEYG+VFVQ+S  G  +  GDS 
Sbjct: 220  MMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSL 279

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                     D  ++ GKVVVAKNPCLHPGD+R+L AV+VPALHHMVDCVVFPQKG RPHP
Sbjct: 280  MFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHP 339

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            +ECSGSDLDGD+YFVCWD +LIP RQ+ PMDY  +P   L HDV IEEVEEYF NY+ ND
Sbjct: 340  DECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGND 399

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
             LG+IAN HT FADKE  KA    C ELAKLFSIA++FPKTGVPAEIP HL VKEYPDFM
Sbjct: 400  KLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFM 459

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK ++PTYES+ V+GKLFR+VKD+APH   I+SFT +VA + +D DMEVDG EDY+ DAF
Sbjct: 460  EKANKPTYESQSVIGKLFREVKDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVRDAF 519

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K ++D+KL +LMD YGI+TE+EIL GS+MK+SKSF+ R+DAE+I+LAVR+L+KEARTW
Sbjct: 520  YYKSQYDFKLGSLMDCYGIRTESEILSGSLMKMSKSFDKRKDAEAIALAVRSLRKEARTW 579

Query: 654  FDKK-SRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIH 478
            F+K  S T +G+   D +YA ASAWY+VTYHP Y GCY++    +HFLSFPWCVYDKLI 
Sbjct: 580  FNKMGSGTYAGA---DDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQ 636

Query: 477  IKKNNSMRRKHNQSLEDQFTS 415
            IK+ + M   H Q  ED  +S
Sbjct: 637  IKR-DKMSISHFQKPEDNLSS 656


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  602 bits (1551), Expect = e-169
 Identities = 297/445 (66%), Positives = 344/445 (77%), Gaps = 1/445 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELRT++RIFV  GRSMMGCLDET  L+YGQVFVQVS            
Sbjct: 682  MMLQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVS------------ 729

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                G+      +V GKVVVAKNPCLHPGD+RVL AVNVP LHHMVDCVVFPQKG RPHP
Sbjct: 730  ----GSRSEQRFIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHP 785

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP +Q+ PMDY  +P   L H+V IEEVEEYF NY++ND
Sbjct: 786  NECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVND 845

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HT FAD+E  KA S EC  LAKLFSIAVDFPKTGVPAEIP  LRVKEYPDFM
Sbjct: 846  SLGIIANAHTVFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFM 905

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+PTY+S  V+GKLFR+VKD+AP+   I+S T E  ++ +D DMEVDG EDY++DAF
Sbjct: 906  EKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAF 965

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             HK  +DYKL NLM+YYGIKTEAEIL G +MK+S+SF  +RDAE+I +AVR+L+KEAR+W
Sbjct: 966  YHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSW 1025

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F++K   N    E D +YAKASAWY+VTYHPSY G Y++  +R HFLSFPWCVYDKLI I
Sbjct: 1026 FNEKG--NGLDSEADDLYAKASAWYHVTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILI 1083

Query: 474  KKNNSMRRKHN-QSLEDQFTSSLRL 403
            KK  + RR     SLE  F   LRL
Sbjct: 1084 KKKVTSRRNSRLSSLESLFARGLRL 1108


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  602 bits (1551), Expect = e-169
 Identities = 300/446 (67%), Positives = 356/446 (79%), Gaps = 1/446 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELR ++RIF+PKGR+MMGCLDET  LEYGQVFVQ S    N+L   S 
Sbjct: 689  MMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSN---NRLQNLSD 745

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
               + + P +  +V GKVVVAKNPCLHPGD+RVLQAV+VP L+HMVDCVVFPQKG RPHP
Sbjct: 746  DFFSYDLPKN-YMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHP 804

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP R ++PMDY A   +EL HDV IEEVEEYFANY++ND
Sbjct: 805  NECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVND 864

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HT FADKE LKA S +C++LA+LFS AVDFPKTGVPA IPP L VKEYPDFM
Sbjct: 865  SLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFM 924

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+PTY+S  V+GKLFR+VK+I+     I SFT  VA+  +D +MEVDG  DY++DAF
Sbjct: 925  EKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAF 984

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             HK  +DYKL NLMDYYGIKTEAEILGG++MK+SKSFN RRDAE+I++AVR+L+KEAR W
Sbjct: 985  YHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAW 1044

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F++ S  +  S   D +YAKASAWY+VTYHPSY GCY++  +R+H+LSF WCVY  L+ I
Sbjct: 1045 FNENSSGDVDSGSSD-VYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQI 1103

Query: 474  KKNN-SMRRKHNQSLEDQFTSSLRLS 400
            KK   S+RR    SLE  F S LRLS
Sbjct: 1104 KKEKLSIRR---SSLEYSF-SGLRLS 1125


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  599 bits (1544), Expect = e-168
 Identities = 290/435 (66%), Positives = 346/435 (79%), Gaps = 1/435 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRAAKLLELRT+TRIFVP GRSMMGCLDET  LEYG+VFVQ+S  G  +  GDS 
Sbjct: 676  MMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSL 735

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                     D  ++ GKVVVAKNPCLHPGD+R+L AV+VPALHHMVDCVVFPQKG RPHP
Sbjct: 736  MFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHP 795

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            +ECSGSDLDGD+YFVCWD +LIP RQ+ PMDY  +P   L HDV IEEVEEYF NY+ ND
Sbjct: 796  DECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGND 855

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
             LG+IAN HT FADKE  KA    C ELAKLFSIA++FPKTGVPAEIP HL VKEYPDFM
Sbjct: 856  KLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFM 915

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK ++PTYES+ V+GKLFR+VKD+APH   ++SFT +VA + +D DMEVDG EDY+ DAF
Sbjct: 916  EKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAF 975

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K ++D+KL +LMD  GI+TE+EIL GS+MK+SKSF+ R+DAE+I+LAVR+L+KEARTW
Sbjct: 976  YYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTW 1035

Query: 654  FDKK-SRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIH 478
            F+K  S T +G+   D +YA ASAWY+VTYHP Y GCY++    +HFLSFPWCVYDKLI 
Sbjct: 1036 FNKMGSGTYAGA---DDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQ 1092

Query: 477  IKKNNSMRRKHNQSL 433
            IK++    R  + SL
Sbjct: 1093 IKRDKMSIRSLHLSL 1107


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  599 bits (1544), Expect = e-168
 Identities = 291/446 (65%), Positives = 350/446 (78%), Gaps = 2/446 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MML+TFRA+KLLELRT+ RIFV KGRSMMGCLDET  L YGQVFVQ S            
Sbjct: 682  MMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS------------ 729

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                G+      +V GKV+VAKNPCLHPGD+RVL+AVNVP LHHMVDCVVFPQKG RPHP
Sbjct: 730  ----GSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHP 785

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGDVYFVCWD ELIP +Q++PMDY  +   +L H+V IEE+EEYF NY++ND
Sbjct: 786  NECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVND 845

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+I+N HTAFAD+E  KA S+ C+ELAKLFSIAVDFPKTGVPAEIP  LRVKEYPDFM
Sbjct: 846  SLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFM 905

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+P+Y+S  V+GKLFR+VK++AP+   IK  T E  ++ +D DMEV+G EDY++DAF
Sbjct: 906  EKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAF 965

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             HK ++DYKL NLMDYYG+KTEAEILGG +MK+S+SF  +RDAE+IS+AVR+L+KEAR+W
Sbjct: 966  FHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSW 1025

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F++K   +   +E D  YAKASAWYYVTYHPSY G Y++  +R+HFLSFPWCVYDKLI I
Sbjct: 1026 FNEKG--SELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQI 1083

Query: 474  KKNNSMRRK--HNQSLEDQFTSSLRL 403
            KK  +  R+     SLE +F   L L
Sbjct: 1084 KKEKAAVREALDLSSLEHRFQRGLHL 1109


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  595 bits (1534), Expect = e-167
 Identities = 283/438 (64%), Positives = 353/438 (80%), Gaps = 5/438 (1%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFR  KL EL+T+TRIF+P GRSMMGCLDET  LEYGQVFVQ S +G  +L     
Sbjct: 759  MMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGL 818

Query: 1554 SMLNGNGPADTV-LVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPH 1378
            S +N +G    V +V+GKV+VAKNPCLHPGD+R+L A++VPALHHMV+CVVFPQKG+RPH
Sbjct: 819  SKINESGSDQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPH 878

Query: 1377 PNECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIN 1198
            PNECSGSDLDGD+YFV WD  LIP  Q  PM+Y+ +P  +L H+V IEE+EEYF NYMIN
Sbjct: 879  PNECSGSDLDGDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMIN 938

Query: 1197 DSLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDF 1018
            DSLG+IAN HT FADKE +KA+S  C++LA LFS+AVDFPKTGVPA+IP HL VKEYPDF
Sbjct: 939  DSLGIIANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDF 998

Query: 1017 MEKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDA 838
            M+K D+PTY+S+RV+GKLFR+VKD+ PHTS I SFT  VA K +D DMEVDG E YL+DA
Sbjct: 999  MDKTDKPTYQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDA 1058

Query: 837  FLHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEART 658
              +K E+D+KLA LMD+YGIKTEAEI+ G+++ L+KSF  RRDAE+I+LA+R+L+KE R 
Sbjct: 1059 HWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILSLAKSFTKRRDAEAIALAMRSLRKEVRG 1118

Query: 657  WF-DKKSRTNSGSQE-DDGIYAKASAWYYVTYHPSYLGCYHQE--KSREHFLSFPWCVYD 490
            WF +K+S  + G    DD +YAKASAWY++TYHP Y G Y +E  ++R HF+SFPWC+YD
Sbjct: 1119 WFKEKRSVVDEGDYSLDDDVYAKASAWYHITYHPEYWGSYFEEDGRNRAHFISFPWCIYD 1178

Query: 489  KLIHIKKNNSMRRKHNQS 436
            KLIHIK++   R ++++S
Sbjct: 1179 KLIHIKRHRIGRGRNSRS 1196


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  593 bits (1530), Expect = e-167
 Identities = 293/435 (67%), Positives = 339/435 (77%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQ FRA+KLLELRT+TRIF+P GRSMMGCLDET  LEYGQV VQ S            
Sbjct: 686  MMLQNFRASKLLELRTKTRIFIPGGRSMMGCLDETRTLEYGQVVVQYS------------ 733

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
               N   P    ++ G VVVAKNPCLHPGD+RVLQAVNVPAL+HMVDCVVFPQKG RPHP
Sbjct: 734  ---NPTMPGKRYIITGPVVVAKNPCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHP 790

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YF+CWD ELIP R  EPMDY   PA  L HDV IEEVEEYFANY++ND
Sbjct: 791  NECSGSDLDGDIYFICWDHELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVND 850

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HTAFADKE LKA S  CIELA+ FSIAVDFPKTG+ AEIP HL VKEYPDFM
Sbjct: 851  SLGIIANAHTAFADKEPLKAFSDPCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFM 910

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            +K D+PTYESK V+GKLFR+VK+ AP    I+SFTL+VA K +D DMEV+G E+Y+++AF
Sbjct: 911  DKPDKPTYESKNVIGKLFREVKERAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAF 970

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             HKG +DY+L NLMDYYGIKTEAEIL G +M++SKSF  RRDAESI  AVRAL+KEA +W
Sbjct: 971  FHKGNYDYRLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKEALSW 1030

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F+     N+  + D    AKASAWY+VTYH SY G Y++  +R+HFLSF WCVYDKL+ I
Sbjct: 1031 FN-----NAEDKNDFDESAKASAWYHVTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRI 1085

Query: 474  KKNNSMRRKHNQSLE 430
            KK N  RR+  ++LE
Sbjct: 1086 KKANVGRRQRQEALE 1100


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  592 bits (1526), Expect = e-166
 Identities = 291/445 (65%), Positives = 348/445 (78%), Gaps = 1/445 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLLELR +TRIF+PKGR+MMG LDET  LEYG+VFVQ S    N++   S 
Sbjct: 693  MMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSN---NRISSLSY 749

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                  G A++++V GKVVVAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHP
Sbjct: 750  ------GSANSLVVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHP 803

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWD ELIP    EPM+Y +   I L+HDV+IEEVEEYF NY++ND
Sbjct: 804  NECSGSDLDGDIYFVCWDPELIPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILND 863

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN H  FADKE  KA+++ CIELAKLFSIAVDFPKTG+PA IPPHL  KEYPDFM
Sbjct: 864  SLGIIANAHIVFADKEPAKAKAEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFM 923

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+ TY+S  V+GKLFR+++ I      I SFTLEVAKK +D DME DG  DY++DAF
Sbjct: 924  EKPDKTTYKSNNVIGKLFREIQGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAF 983

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             HK  +DYKL NLMDYYGIK E+EIL G++M++SKSFN RRD ++I++AVR+L+KEAR+W
Sbjct: 984  YHKTNYDYKLGNLMDYYGIKNESEILSGNIMRMSKSFNKRRDGDAINMAVRSLRKEARSW 1043

Query: 654  F-DKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIH 478
            F D  +  +SGS +    YAKASAWYYVTYH SY G Y++   R+HFLSFPWCVY  L+ 
Sbjct: 1044 FNDDATGVDSGSVD---AYAKASAWYYVTYHHSYWGSYNEGMKRDHFLSFPWCVYHLLVQ 1100

Query: 477  IKKNNSMRRKHNQSLEDQFTSSLRL 403
            IKK  +  R H  SLE  F+  LRL
Sbjct: 1101 IKKEKARMRMHAVSLEQSFSRRLRL 1125


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  588 bits (1515), Expect = e-165
 Identities = 287/446 (64%), Positives = 346/446 (77%), Gaps = 2/446 (0%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MML+TFRA+KLLELRT+ RIFV KGRSMMGCLDET  L YGQVFVQ S            
Sbjct: 682  MMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS------------ 729

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                G+      +V GKV+VAKNPCLHPGD+RVL+AVNVP LHHMVDCVVFPQKG RPHP
Sbjct: 730  ----GSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHP 785

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGDVYFVCWD ELIP +Q++PMDY  +   +L H+V IEE+EEYF NY++ND
Sbjct: 786  NECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVND 845

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+I+N HTAFAD+E  KA S+ C+ELAKLFSIAVDFPKTGVPAEIP  LRVKE+PDFM
Sbjct: 846  SLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFM 905

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+P+Y+S  V+GKLFR+VK++AP+   IK  T E  K+ +D DMEV+G  DY++DAF
Sbjct: 906  EKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAF 965

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K ++DYKL NLMDYYG+KTEAEIL G +MK+S+SF  +RDAESIS+AVR+L+KEAR+W
Sbjct: 966  FYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSW 1025

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F++K   +   +E D  YAKASAWYYVTYH SY G Y++  +R+HFLSFPWCVYDKLI I
Sbjct: 1026 FNEKG--SELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQI 1083

Query: 474  KKNNSMRRK--HNQSLEDQFTSSLRL 403
            KK  +  R+     SLE +F     L
Sbjct: 1084 KKEKAALREALDLSSLEHRFQRGFHL 1109


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  583 bits (1504), Expect = e-164
 Identities = 278/428 (64%), Positives = 340/428 (79%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQTFRA+KLL+LRTR+RIF+P GR+MMGCLDE+  LEYGQVFVQ +  G  +   D  
Sbjct: 675  MMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLH 734

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
               N        ++ G VVVAKNPCLHPGD+RVL+AVNV ALHHMVDCVVFPQKG+RPHP
Sbjct: 735  PFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHP 794

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWDQ++IP RQV+PM+Y  +P+I+L HDV IEEVEEYF NY++ND
Sbjct: 795  NECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVND 854

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN H  FAD+E   A S  C +LA+LFSIAVDFPKTGVPAEIP  LR KEYPDFM
Sbjct: 855  SLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFM 914

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            +K D+ +Y S+RV+GKLFR+VKD AP  S I +FT +VA++ +D DMEVDG EDY+++AF
Sbjct: 915  DKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAF 974

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K E+D KL NLMDYYGIKTEAEIL G +MK SK+F+ R+DAE+IS+AVRAL+KEAR W
Sbjct: 975  DYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAW 1034

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F +++       + D +  KASAWY+VTYHP+Y GCY+Q   R HF+SFPWCVYD+LI I
Sbjct: 1035 FKRRN-------DIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQI 1087

Query: 474  KKNNSMRR 451
            KK+ +  R
Sbjct: 1088 KKDKARNR 1095


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  582 bits (1499), Expect = e-163
 Identities = 295/445 (66%), Positives = 342/445 (76%)
 Frame = -3

Query: 1734 MMLQTFRAAKLLELRTRTRIFVPKGRSMMGCLDETAALEYGQVFVQVSRLGRNKLCGDSS 1555
            MMLQ FRA+KLLELRT+TRIF+  GRSMMGCLDET  LEYGQV VQ S   R        
Sbjct: 677  MMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMR-------- 728

Query: 1554 SMLNGNGPADTVLVLGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHP 1375
                   P    ++ G VVVAKNPCLHPGD+RVL+AVNVPAL+HMVDCVVFPQKG RPHP
Sbjct: 729  -------PGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHP 781

Query: 1374 NECSGSDLDGDVYFVCWDQELIPLRQVEPMDYDASPAIELHHDVQIEEVEEYFANYMIND 1195
            NECSGSDLDGD+YFVCWDQELIP R  EPMDY   PA  L HDV IEEVEEYFANY++ND
Sbjct: 782  NECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVND 841

Query: 1194 SLGVIANTHTAFADKEQLKAESKECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 1015
            SLG+IAN HTAFADKE LKA S  CIELA+ FS+AVDFPKTGV AEIP HL VKEYPDFM
Sbjct: 842  SLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFM 901

Query: 1014 EKLDRPTYESKRVMGKLFRQVKDIAPHTSHIKSFTLEVAKKLFDTDMEVDGLEDYLEDAF 835
            EK D+PTYESK V+GKLFR+VK+ AP    IKSFTL+VA K +D DMEVDG E+Y+++AF
Sbjct: 902  EKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAF 961

Query: 834  LHKGEFDYKLANLMDYYGIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTW 655
             +K  +D+KL NLMDYYGIKTEAEIL G +M++SKSF  RRDAESI  AVRAL+KE  + 
Sbjct: 962  HYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSL 1021

Query: 654  FDKKSRTNSGSQEDDGIYAKASAWYYVTYHPSYLGCYHQEKSREHFLSFPWCVYDKLIHI 475
            F+        + E++   AKASAWY+VTYH SY G Y++  +R+HFLSF WCVYDKL+ I
Sbjct: 1022 FN--------ATEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRI 1073

Query: 474  KKNNSMRRKHNQSLEDQFTSSLRLS 400
            KK N+ RR+  ++LE +    LRLS
Sbjct: 1074 KKTNAGRRQRQETLE-RLGHVLRLS 1097