BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00017240
         (1222 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   426   e-116
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   425   e-116
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   425   e-116
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   425   e-116
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   422   e-115
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   419   e-115
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...   416   e-113
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   416   e-113
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   413   e-113
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   412   e-112
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   406   e-110
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...   404   e-110
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A...   397   e-108
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   392   e-106
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         392   e-106
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   392   e-106
ref|XP_004304185.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   392   e-106
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   391   e-106
emb|CBL87031.1| RNA polymerase [Nuphar advena]                        389   e-105
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...   388   e-105

>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  426 bits (1095), Expect = e-116
 Identities = 226/410 (55%), Positives = 289/410 (70%), Gaps = 18/410 (4%)
 Frame = -3

Query: 1178 EDSIC--KVNLKPLELNP--FHQ--NGEVNVVRNFYYRCLGDTS--VSFSGNLSHPKGYA 1023
            +DSI   KV    L++ P   H+  +G +  + N +   +G TS  V  + N   P+GYA
Sbjct: 75   QDSILREKVKFGCLDMVPRGIHEVGSGRIGEILN-HEDYMGRTSFGVLKNDNFWCPRGYA 133

Query: 1022 SVAEAICTTDTEEDISVMDANQGEFQHEQEKEP---------KIVPGVGNAEYELLKRRQ 870
            +VAEA+ +TD EED+S+++  Q E   E +KE          ++  G+G+ +Y +LK RQ
Sbjct: 134  TVAEAVSSTDVEEDVSIVEEIQ-ELLQEMKKEQQSGGGRNRRRVARGMGSGKYRMLKMRQ 192

Query: 869  IKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCRQGT 690
            +KIETEAWE+AA EY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA +QE CR   
Sbjct: 193  VKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAK 252

Query: 689  -KANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRIHNY 513
             K  YAPYFDQLPA+MMAV+TMHK+MG  M+  +HG A+VVQAAC IG+AIEQEVRIH +
Sbjct: 253  HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKF 312

Query: 512  LEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEEDEIK 333
            LEKT+KK      + +EGDE +    +Q +LR              VR I+KGQ  D+ K
Sbjct: 313  LEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ--DDFK 370

Query: 332  PWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKF 153
            PWGQ+A AKVGSR+IELL Q+AYIQ P DQL+D PPDI PAF H+++T+  ++   S+K+
Sbjct: 371  PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKY 430

Query: 152  GVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            GVIEC+PL+ +GLE+TA+HMVIPYMPMLVPP  W  YDKGAH FLPSYVM
Sbjct: 431  GVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 480


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  425 bits (1093), Expect = e-116
 Identities = 226/413 (54%), Positives = 290/413 (70%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1178 EDSIC--KVNLKPLELNP--FHQ--NGEVNVVRNFYYRCLGDTS--VSFSGNLSHPKGYA 1023
            +DSI   KV    L++ P   H+  +G +  + N +   +G TS  V  + N   P+GYA
Sbjct: 75   QDSILREKVKFGCLDMVPRGIHEVGSGRIGEILN-HEDYMGRTSFGVLKNDNFWCPRGYA 133

Query: 1022 SVAEAICTTDTEEDISVMDANQG---EFQHEQEKEP---------KIVPGVGNAEYELLK 879
            +VAEA+ +TD EED+S+++  Q    E + E+++E          ++  G+G+ +Y +LK
Sbjct: 134  TVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLK 193

Query: 878  RRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCR 699
             RQ+KIETEAWEQAA EY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA +QE CR
Sbjct: 194  MRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253

Query: 698  QGT-KANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRI 522
                K  YAPYFDQLPA+MMAV+TMHK+MG  M+  +HG A+VVQAAC IG+AIEQEVRI
Sbjct: 254  MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313

Query: 521  HNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEED 342
            H +LEKT+KK      + +EGDE +    +Q +LR              VR I+KGQ  D
Sbjct: 314  HKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ--D 371

Query: 341  EIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLS 162
            + KPWGQ+A AKVGSR+IELL Q+AYIQ P DQL D PPDI PAF H+++T+  ++   S
Sbjct: 372  DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGS 431

Query: 161  RKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            +K+GVIEC+PL+ +GLE+TA+HMVIPYMPMLVPP  W  YDKGAH FLPSYVM
Sbjct: 432  KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 484


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  425 bits (1093), Expect = e-116
 Identities = 226/413 (54%), Positives = 290/413 (70%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1178 EDSIC--KVNLKPLELNP--FHQ--NGEVNVVRNFYYRCLGDTS--VSFSGNLSHPKGYA 1023
            +DSI   KV    L++ P   H+  +G +  + N +   +G TS  V  + N   P+GYA
Sbjct: 75   QDSILREKVKFGCLDMVPRGIHEVGSGRIGEILN-HEDYMGRTSFGVLKNDNFWCPRGYA 133

Query: 1022 SVAEAICTTDTEEDISVMDANQG---EFQHEQEKEP---------KIVPGVGNAEYELLK 879
            +VAEA+ +TD EED+S+++  Q    E + E+++E          ++  G+G+ +Y +LK
Sbjct: 134  TVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLK 193

Query: 878  RRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCR 699
             RQ+KIETEAWEQAA EY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA +QE CR
Sbjct: 194  MRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253

Query: 698  QGT-KANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRI 522
                K  YAPYFDQLPA+MMAV+TMHK+MG  M+  +HG A+VVQAAC IG+AIEQEVRI
Sbjct: 254  MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313

Query: 521  HNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEED 342
            H +LEKT+KK      + +EGDE +    +Q +LR              VR I+KGQ  D
Sbjct: 314  HKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ--D 371

Query: 341  EIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLS 162
            + KPWGQ+A AKVGSR+IELL Q+AYIQ P DQL D PPDI PAF H+++T+  ++   S
Sbjct: 372  DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGS 431

Query: 161  RKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            +K+GVIEC+PL+ +GLE+TA+HMVIPYMPMLVPP  W  YDKGAH FLPSYVM
Sbjct: 432  KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 484


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533044|gb|ESR44227.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  425 bits (1093), Expect = e-116
 Identities = 226/413 (54%), Positives = 290/413 (70%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1178 EDSIC--KVNLKPLELNP--FHQ--NGEVNVVRNFYYRCLGDTS--VSFSGNLSHPKGYA 1023
            +DSI   KV    L++ P   H+  +G +  + N +   +G TS  V  + N   P+GYA
Sbjct: 75   QDSILREKVKFGCLDMVPRGIHEVGSGRIGEILN-HEDYMGRTSFGVLKNDNFWCPRGYA 133

Query: 1022 SVAEAICTTDTEEDISVMDANQG---EFQHEQEKEP---------KIVPGVGNAEYELLK 879
            +VAEA+ +TD EED+S+++  Q    E + E+++E          ++  G+G+ +Y +LK
Sbjct: 134  TVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLK 193

Query: 878  RRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCR 699
             RQ+KIETEAWEQAA EY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA +QE CR
Sbjct: 194  MRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253

Query: 698  QGT-KANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRI 522
                K  YAPYFDQLPA+MMAV+TMHK+MG  M+  +HG A+VVQAAC IG+AIEQEVRI
Sbjct: 254  MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313

Query: 521  HNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEED 342
            H +LEKT+KK      + +EGDE +    +Q +LR              VR I+KGQ  D
Sbjct: 314  HKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ--D 371

Query: 341  EIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLS 162
            + KPWGQ+A AKVGSR+IELL Q+AYIQ P DQL D PPDI PAF H+++T+  ++   S
Sbjct: 372  DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGS 431

Query: 161  RKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            +K+GVIEC+PL+ +GLE+TA+HMVIPYMPMLVPP  W  YDKGAH FLPSYVM
Sbjct: 432  KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 484


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  422 bits (1086), Expect = e-115
 Identities = 224/375 (59%), Positives = 272/375 (72%), Gaps = 13/375 (3%)
 Frame = -3

Query: 1088 YRCLGDTSVSFSGNLSHPKGYASVAEAICTTDTEEDISVMDANQ---GEFQHEQEKEP-- 924
            + CL +  + FSG    PK YASVAEA+ +TD EED+S  D  Q   GE + E++++   
Sbjct: 121  FGCLRN-QMGFSGFC--PKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNF 177

Query: 923  ------KIVPGVGNAEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKS 762
                  K+  G+    Y  L+RRQ+KIETEAWE AAKEYKELL DMCEQKLAPNLPYMKS
Sbjct: 178  KRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKS 237

Query: 761  LFLGWFEPLRNCIAADQELCRQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHG 585
            LFLGWFEPLR+ I  +QELCR G  KA YAPYFDQLPA+MM+V+TMHK++G  M+  +HG
Sbjct: 238  LFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHG 297

Query: 584  TAKVVQAACQIGEAIEQEVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXX 405
            + +VVQAAC IG+AIEQEVRIHN+LEKT++K    K K+ EG   DP   +Q +LR    
Sbjct: 298  STRVVQAACVIGDAIEQEVRIHNFLEKTKRKK-VGKDKNVEGGGFDPVIHEQEKLRKKVT 356

Query: 404  XXXXXXXXXXVRHIIKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVD-QLSDGP 228
                       R I+KG   D  KPWG EA AKVGSRLIELL+Q+AYIQPPVD QL+D P
Sbjct: 357  NLMKKQKLHAARQIVKGH--DNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTP 414

Query: 227  PDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWI 48
            PDIRPAF H+ KT+  ++  + R+FGVIECDPL+ +GLE+TA+HMVIPY+PMLVPP  W 
Sbjct: 415  PDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWT 474

Query: 47   RYDKGAHLFLPSYVM 3
             YDKGAHLFLPSYVM
Sbjct: 475  GYDKGAHLFLPSYVM 489


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  419 bits (1078), Expect = e-115
 Identities = 216/365 (59%), Positives = 275/365 (75%), Gaps = 9/365 (2%)
 Frame = -3

Query: 1070 TSVSFSGNLSHPKGYASVAEAICTTDTEEDISVMD--------ANQGEFQHEQEKEPKIV 915
            T V+F G   + KGYAS AEAI +   EED+S +D         N+G+   + EK+PK++
Sbjct: 79   TPVNFFGLFGYQKGYASAAEAIAS---EEDMSGVDEVQELVEEVNKGD---KLEKQPKLI 132

Query: 914  PGVGNAEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPL 735
             GV   ++ +L+RRQIK+ETEAWE+AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPL
Sbjct: 133  GGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPL 192

Query: 734  RNCIAADQELCRQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAAC 558
            R+ IAA+Q+LC+QG  +A YAPYFD LPA+MMAV+TMHK+MG  M+ + +G+A+VVQAAC
Sbjct: 193  RDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAAC 252

Query: 557  QIGEAIEQEVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXX 378
             IGEAIE EVRI  ++EKT+KK   A   + +G   +P   +Q +LR             
Sbjct: 253  HIGEAIEHEVRIQRFMEKTKKK--SASSNNPDGGS-NPVTKEQEKLRKKVSMLMKKQKLQ 309

Query: 377  XVRHIIKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHS 198
             VR I+K Q  D+ KPWGQ+A+ KVGSRLIELLI++AYIQPP DQL DGPPDIRPAF H+
Sbjct: 310  QVRQIVKRQ--DDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHT 367

Query: 197  MKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFL 18
            +KT+  ++   +R++GVIECDPL+ +GLEKTA+HMVIPYMPMLVPP +W  YDKGA+LFL
Sbjct: 368  LKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFL 427

Query: 17   PSYVM 3
            PSYVM
Sbjct: 428  PSYVM 432


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  416 bits (1069), Expect = e-113
 Identities = 212/357 (59%), Positives = 257/357 (71%), Gaps = 12/357 (3%)
 Frame = -3

Query: 1037 PKGYASVAEAICTTDTEEDISVMDANQG-----------EFQHEQEKEPKIVPGVGNAEY 891
            PKGYASVAEA+ +TD EE++SV+D  Q            E Q++Q        G+G  +Y
Sbjct: 127  PKGYASVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRTRQNRARGMGQGKY 186

Query: 890  ELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQ 711
             +LKRRQIKIETEAWE+AAKEY+EL+ DMCEQKLAPNLPYMKSLFLGWFEPLRN I  +Q
Sbjct: 187  HMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQ 246

Query: 710  ELCRQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQ 534
            +LCR+G  K  YAPY DQLPA+MM+V+TMHK+MG  M+  +HGT +VV AAC IGEAIEQ
Sbjct: 247  DLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQ 306

Query: 533  EVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKG 354
            EVRIH +LE TRKK  +   K +E  E D    ++ +L               VR I+  
Sbjct: 307  EVRIHKFLEMTRKKKVD---KDQENGESDAAKKEREKLNKKVTNLMKKQKLKAVRGIVS- 362

Query: 353  QEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDS 174
             + D  K W  EA AKVGSRLIELL Q+A+IQPP DQL+DGPPDIRPAF H+ +T+  D+
Sbjct: 363  -KHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTVAKDA 421

Query: 173  LNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
             N SR++GVIECDPL+ +GLEKTA+HMVIPYMPMLVPP +W  YDKG + FLPSYVM
Sbjct: 422  KNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSYVM 478


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  416 bits (1069), Expect = e-113
 Identities = 223/413 (53%), Positives = 285/413 (69%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1178 EDSICKVNLKPLELNPFHQNGEVNVVRNFYYRCLGDTSVS-------FSGNLSHPKGYAS 1020
            +DSI K N K   L P   +  V   +N      GD  +S        + N    K YAS
Sbjct: 67   QDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYAS 126

Query: 1019 VAEAIC--TTDTEEDISVMDA-----------NQGEFQHEQEKEPKIVPGVGNAEYELLK 879
            VAEA+   +TD EED+SV+D             + +F   + K+  +  G+G+ +Y+ LK
Sbjct: 127  VAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLK 186

Query: 878  RRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCR 699
            RRQ+K+ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ IA +QELC 
Sbjct: 187  RRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCS 246

Query: 698  QG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRI 522
            QG +KA YA YF QLPA+MMAV+TMHK+MG  M+  DHGTA+VVQAA  IG+AIEQEVRI
Sbjct: 247  QGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRI 306

Query: 521  HNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEED 342
            HN+LEKT+K+  E   + ++G+    E   Q +LR              V  I++ Q  D
Sbjct: 307  HNFLEKTKKQKAEKDKQKEDGEHVTQE---QEKLRKKVTNLMKKQKLRAVGQIVRRQ--D 361

Query: 341  EIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLS 162
            + KPWGQ+A AKVGSRLI+LL+Q+AYIQPP +QL+  PPDIRPAF HS++T+  ++ + S
Sbjct: 362  DSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSAS 421

Query: 161  RKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            R++G+I+CD L+F+GLE+TA+HMVIPYMPMLVPP  W  YDKG HL+LPSYVM
Sbjct: 422  RRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  413 bits (1062), Expect = e-113
 Identities = 222/413 (53%), Positives = 284/413 (68%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1178 EDSICKVNLKPLELNPFHQNGEVNVVRNFYYRCLGDTSVS-------FSGNLSHPKGYAS 1020
            +DSI K N K   L P   +  V   +N      GD  +S        + N    K YAS
Sbjct: 67   QDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYAS 126

Query: 1019 VAEAIC--TTDTEEDISVMDA-----------NQGEFQHEQEKEPKIVPGVGNAEYELLK 879
            VAEA+   +TD EED+SV+D             + +F   + K+  +  G+G+ +Y+ LK
Sbjct: 127  VAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLK 186

Query: 878  RRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCR 699
            RRQ+K+ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ IA +QELC 
Sbjct: 187  RRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCS 246

Query: 698  QG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRI 522
            QG +KA YA YF QLPA+MMAV+TMHK+MG  M+  DHGTA+VVQAA  IG+AIEQEVRI
Sbjct: 247  QGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRI 306

Query: 521  HNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEED 342
            HN+LEKT+K+  E   + ++G+    E   Q +LR              V  I++ Q  D
Sbjct: 307  HNFLEKTKKQKAEKDKQKEDGEHVTQE---QEKLRKKVTNLMKKQKLRAVGQIVRRQ--D 361

Query: 341  EIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLS 162
            + KPWGQ+A AKVGSRLI+LL+Q+AYIQPP +QL+  PPDI PAF HS++T+  ++ + S
Sbjct: 362  DSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSAS 421

Query: 161  RKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            R++G+I+CD L+F+GLE+TA+HMVIPYMPMLVPP  W  YDKG HL+LPSYVM
Sbjct: 422  RRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  412 bits (1060), Expect = e-112
 Identities = 223/414 (53%), Positives = 284/414 (68%), Gaps = 22/414 (5%)
 Frame = -3

Query: 1178 EDSICKVNLKPLELNPFHQNGEVNVVRNFYYRCLGDTSVSF--------SGNLSHPKGYA 1023
            +DS+ K N K   L P   +  V   +N      GD  +S         S +    K YA
Sbjct: 67   QDSVFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYA 126

Query: 1022 SVAEAIC--TTDTEEDISVMDANQG-----------EFQHEQEKEPKIVPGVGNAEYELL 882
            SVAEA+   +TD EED+SV+D  Q            +F   + K+  +  G+G+ +Y+ L
Sbjct: 127  SVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTL 186

Query: 881  KRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELC 702
            KRRQ+K+ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ IA +QELC
Sbjct: 187  KRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELC 246

Query: 701  RQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVR 525
             QG +KA YA Y  QLPA+MMAV+TMHK+MG  M+  DHGTA+VVQAA  IG+AIEQEVR
Sbjct: 247  SQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVR 306

Query: 524  IHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEE 345
            IHN+LEKT+K+  E   + ++G+    E   Q +LR              V  I++ Q  
Sbjct: 307  IHNFLEKTKKQKAEKDKQKEDGEHVTQE---QEKLRKKVTNLMKKQKLRAVGQIVRRQ-- 361

Query: 344  DEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNL 165
            D+ KPWGQ+A AKVGSRLIELL+Q+AYIQPP +QL+  PPDIRPAF HS++T+  ++ + 
Sbjct: 362  DDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSA 421

Query: 164  SRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            SR++G+I+CD L+F+GLE+TA+HMVIPYMPMLVPP  W  YDKG HL+LPSYVM
Sbjct: 422  SRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 475


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  406 bits (1043), Expect = e-110
 Identities = 211/377 (55%), Positives = 271/377 (71%), Gaps = 26/377 (6%)
 Frame = -3

Query: 1055 SGNLSHPKGYASVAEAICTTDTEEDIS------------VMDANQGEFQHEQEKEPKIVP 912
            SG  ++ KGYASVAEAI +TD EED S            + + N  E   +Q K  ++V 
Sbjct: 88   SGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQEMLEDLIRENNMVESHFKQPK--RVVV 145

Query: 911  GVGNAEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLR 732
            G+G  +Y LL++RQIK+ETEAW++AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 146  GMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLADMCEQKLAPNLPYIKSLFLGWFEPLR 205

Query: 731  NCIAADQELCRQ-GTKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDH-GTAKVVQAAC 558
            + IAADQ+ C+Q  ++ ++APYFD LPA+ MAV+TMHK+MG  M+++   G+ +VVQAAC
Sbjct: 206  DAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVITMHKLMGLLMTNNGGIGSVRVVQAAC 265

Query: 557  QIGEAIEQEVRIHNYLEKTRKKPGEAKGKS------------KEGDEPDPEAIKQARLRX 414
             IGEAIE EVRIH +LEKT+KK      K+            K  DE +    +Q RLR 
Sbjct: 266  AIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSVPVTIEQEKLADEQEKLTKEQERLRK 325

Query: 413  XXXXXXXXXXXXXVRHIIKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSD 234
                         VR I+K  E++++KPWGQEAH KVG RLI+LL+ +AYIQPPVDQ+ D
Sbjct: 326  KVNKLIKRQKMQQVRGIVK--EQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQPPVDQIGD 383

Query: 233  GPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPES 54
            GPPDIRPAF H++KTI  D+   SR++GVIECDP++ +G+EKTA+HMV+PYMPMLVPP +
Sbjct: 384  GPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYMPMLVPPIN 443

Query: 53   WIRYDKGAHLFLPSYVM 3
            W  YD+GA+LFLPSYVM
Sbjct: 444  WTGYDRGAYLFLPSYVM 460


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score =  404 bits (1039), Expect = e-110
 Identities = 205/353 (58%), Positives = 264/353 (74%), Gaps = 9/353 (2%)
 Frame = -3

Query: 1034 KGYASVAEAICTTDTEEDISVMDA--------NQGEFQHEQEKEPKIVPGVGNAEYELLK 879
            +GYA+ AEA+ +T  EE   + +         N     + ++K+PK+V G+G  +Y  L+
Sbjct: 92   RGYAAAAEALVSTSEEEVDELQELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYNSLR 151

Query: 878  RRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCR 699
            RRQIKIETEAWE AAKEY+ELLEDMCEQKLAPNLPY+KSLFLGWFEPLR+ IAA+Q+LC+
Sbjct: 152  RRQIKIETEAWENAAKEYQELLEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCK 211

Query: 698  QG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRI 522
            +G  +  YAPYFDQLPAEMMAV+TMHK+MG  M+   +G+A+VVQAAC IGEAIE EVRI
Sbjct: 212  EGKNRGAYAPYFDQLPAEMMAVITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRI 271

Query: 521  HNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEED 342
            H +L+  ++K       S+EG  PDPEA +Q RLR              VR+I++ Q  D
Sbjct: 272  HKFLDNCKRK-NALNRTSEEG--PDPEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQ--D 326

Query: 341  EIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLS 162
            ++KPWGQ+A  KVG RLI++L Q+AYIQPPVDQ  DG PDIRPAF H++K   +++L  S
Sbjct: 327  DLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAPDIRPAFVHTLKC--VETLKGS 384

Query: 161  RKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            R++GVIECDPL+ +G+EKTA+HMVIPYMPMLVPP +W  Y++GA+LFLPSY+M
Sbjct: 385  RRYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLNWTGYERGAYLFLPSYMM 437


>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
            gi|548846502|gb|ERN05778.1| hypothetical protein
            AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score =  397 bits (1020), Expect = e-108
 Identities = 208/361 (57%), Positives = 262/361 (72%), Gaps = 17/361 (4%)
 Frame = -3

Query: 1034 KGYASVAEAICTTDTEEDIS--------VMDAN----QGEFQHEQEK-EPK--IVPGV-G 903
            KG+A+ AEA+ +TD +ED S        V+  N     G  + E+EK +PK     GV G
Sbjct: 104  KGFANAAEAVVSTDIDEDCSSGSEETHLVLPTNGYNSNGAIREEREKLKPKNGYKDGVMG 163

Query: 902  NAEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCI 723
             A+Y  L+ RQ+KIETEAW+QAAKEY+EL+ DMCE KLAPNLPYMKSLFLGWFEPLR+ I
Sbjct: 164  KAKYLALRTRQVKIETEAWDQAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWFEPLRDII 223

Query: 722  AADQELCRQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGE 546
            A++Q   + G  K  YAPYF QLPA+MM+V+TMHK+MG  M+  D+G+ ++VQAACQIGE
Sbjct: 224  ASEQASYKAGKNKGAYAPYFMQLPADMMSVITMHKLMGLLMTGTDNGSTRLVQAACQIGE 283

Query: 545  AIEQEVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRH 366
            AIEQEV+IH + EKT+KK    K K  +G+EP+    ++  LR              VR 
Sbjct: 284  AIEQEVKIHRFFEKTKKKSD--KEKKLDGEEPNEGDKEKESLRKRVTNLMKKQKLHQVRK 341

Query: 365  IIKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTI 186
            I+KGQ  D+ KPWG + HAKVGSRLIELLI++AY+QPPVDQ ++GPPDIRPAF+H +KT+
Sbjct: 342  IVKGQ--DDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAEGPPDIRPAFRHILKTV 399

Query: 185  KIDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYV 6
              +   + R++GVIECDPLI +GLEKTA+HMVIPYMPMLVPP  W  YD+G HLFLPSYV
Sbjct: 400  TKNDQKIRRRYGVIECDPLICKGLEKTARHMVIPYMPMLVPPVKWTGYDRGGHLFLPSYV 459

Query: 5    M 3
            M
Sbjct: 460  M 460


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score =  392 bits (1008), Expect = e-106
 Identities = 213/400 (53%), Positives = 274/400 (68%), Gaps = 9/400 (2%)
 Frame = -3

Query: 1175 DSICKVNLKPLELNPFHQNGEVNVVRNFYYRCLGDTSVSFSGNLSHPKGYASVAEAICTT 996
            + IC+ + K   L    QN   + V+  +  C        SG+L   + Y S AEAI +T
Sbjct: 70   EGICEESSKNPHLG-LSQNSTFSSVKGDFRIC----GKRGSGSLGRLRSYGSAAEAIVST 124

Query: 995  DTEEDISVMDANQGEFQHEQE--------KEPKIVPGVGNAEYELLKRRQIKIETEAWEQ 840
             +EEDI  +     E   E E        K+PK + G+G  +Y  L+RRQIK+ETEAWE+
Sbjct: 125  -SEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAWEE 183

Query: 839  AAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCRQG-TKANYAPYFD 663
            AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IAA+Q+LC +G  +  YAP+FD
Sbjct: 184  AAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFD 243

Query: 662  QLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRIHNYLEKTRKKPGE 483
            QLPAEMMAV+TMHK+MG  M+    G+A+VVQAA  IGEAIE E RIH +LEKT KK   
Sbjct: 244  QLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKT-KKSNA 302

Query: 482  AKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEEDEIKPWGQEAHAKV 303
              G  +E   P     ++ RLR              VR I+K  ++D+ KPWGQ+   KV
Sbjct: 303  LSGDLEE--TPGDMMKERERLRKKVKILMKKQKLRQVRKIVK--QQDDEKPWGQDNLVKV 358

Query: 302  GSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIF 123
            G RLI++L+++AYIQPP DQL DGPPDIRPAF H++KT  ++++  SR++GVI+CDPL+ 
Sbjct: 359  GCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKT--VETMKGSRRYGVIQCDPLVR 416

Query: 122  QGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            +GL+KTA+HMVIPYMPMLVPP+SW+ YDKG +LFLPSY+M
Sbjct: 417  KGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIM 456


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  392 bits (1008), Expect = e-106
 Identities = 213/400 (53%), Positives = 274/400 (68%), Gaps = 9/400 (2%)
 Frame = -3

Query: 1175 DSICKVNLKPLELNPFHQNGEVNVVRNFYYRCLGDTSVSFSGNLSHPKGYASVAEAICTT 996
            + IC+ + K   L    QN   + V+  +  C        SG+L   + Y S AEAI +T
Sbjct: 70   EGICEESSKNPHLG-LSQNSTFSSVKGDFRIC----GKRGSGSLGRLRSYGSAAEAIVST 124

Query: 995  DTEEDISVMDANQGEFQHEQE--------KEPKIVPGVGNAEYELLKRRQIKIETEAWEQ 840
             +EEDI  +     E   E E        K+PK + G+G  +Y  L+RRQIK+ETEAWE+
Sbjct: 125  -SEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAWEE 183

Query: 839  AAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQELCRQG-TKANYAPYFD 663
            AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IAA+Q+LC +G  +  YAP+FD
Sbjct: 184  AAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFD 243

Query: 662  QLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQEVRIHNYLEKTRKKPGE 483
            QLPAEMMAV+TMHK+MG  M+    G+A+VVQAA  IGEAIE E RIH +LEKT KK   
Sbjct: 244  QLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKT-KKSNA 302

Query: 482  AKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKGQEEDEIKPWGQEAHAKV 303
              G  +E   P     ++ RLR              VR I+K  ++D+ KPWGQ+   KV
Sbjct: 303  LSGDLEE--TPGDMMKERERLRKKVKILMKKQKLRQVRKIVK--QQDDEKPWGQDNLVKV 358

Query: 302  GSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIF 123
            G RLI++L+++AYIQPP DQL DGPPDIRPAF H++KT  ++++  SR++GVI+CDPL+ 
Sbjct: 359  GCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKT--VETMKGSRRYGVIQCDPLVR 416

Query: 122  QGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            +GL+KTA+HMVIPYMPMLVPP+SW+ YDKG +LFLPSY+M
Sbjct: 417  KGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIM 456


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  392 bits (1007), Expect = e-106
 Identities = 206/360 (57%), Positives = 261/360 (72%), Gaps = 9/360 (2%)
 Frame = -3

Query: 1055 SGNLSHPKGYASVAEAICTTDTEEDISVMDANQGEFQHEQE--------KEPKIVPGVGN 900
            SG+L   + Y S AEAI +T +EEDI  +     E   E E        K+PK + G+G 
Sbjct: 105  SGSLGFLRSYGSAAEAIAST-SEEDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGV 163

Query: 899  AEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIA 720
             +Y LL+RRQIK+ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA
Sbjct: 164  GKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 223

Query: 719  ADQELCRQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEA 543
            A+Q+LC +G  +  YAP+FDQLPAEMMAV+TMHK+MG  M+    G+A+VVQAA  IGEA
Sbjct: 224  AEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEA 283

Query: 542  IEQEVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHI 363
            IE E RIH +LEKT KK     G  +  D P     ++ RLR              VR I
Sbjct: 284  IEHEARIHRFLEKT-KKSNALSGDLE--DTPGDIMKERERLRKKVKILMKKQKLQQVRKI 340

Query: 362  IKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIK 183
            +K  ++D+ KPWGQ+   KVG RLI++L+++AYIQPP DQL D PPDIRPAF H++KT  
Sbjct: 341  VK--QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKT-- 396

Query: 182  IDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            ++++  SR++GVI+CDPL+ +GL+KTA+HMVIPYMPMLVPP+SW+ YDKGA+LFLPSY+M
Sbjct: 397  VETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIM 456


>ref|XP_004304185.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 1262

 Score =  392 bits (1006), Expect = e-106
 Identities = 209/364 (57%), Positives = 256/364 (70%), Gaps = 19/364 (5%)
 Frame = -3

Query: 1037 PKGYASVAEAICTTDT------EEDISVMDANQGEFQHEQEKEPKI------------VP 912
            PKGYASVAEAI +TD       EE++ V+D  Q E   E +KE K             V 
Sbjct: 362  PKGYASVAEAISSTDASSSTDAEEEVCVVDELQ-EILKEMKKEDKRQSAYRWRIEQARVR 420

Query: 911  GVGNAEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLR 732
            G+G  +Y +L+RRQIKIETEAWE+AA EY+ELL DMCEQKLAPNLPYMKSLFLGWFEPL 
Sbjct: 421  GMGEGKYLMLRRRQIKIETEAWERAADEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLC 480

Query: 731  NCIAADQELCRQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQ 555
            N I  +Q+LCRQG  K  Y PY D+LPA+MMAV+TMHK+MG  M+  +HG+ +VV AAC 
Sbjct: 481  NAITKEQDLCRQGKNKTAYGPYMDKLPADMMAVITMHKLMGLLMTG-EHGSCRVVSAACT 539

Query: 554  IGEAIEQEVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXX 375
            IGEAIEQEV+IHN+LE+T+KK     GK +E  E D    +  +L               
Sbjct: 540  IGEAIEQEVKIHNFLERTKKK---KVGKDQETGESDAAMKENEKLNKKVTNLIEKKKLQA 596

Query: 374  VRHIIKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSM 195
            VRHI++G   D+ K W QEA AKVGSR+IELL Q+A+IQPP DQL D   DIRPAF H+ 
Sbjct: 597  VRHIVRG--HDDSKAWSQEAKAKVGSRMIELLTQTAFIQPPADQLGDSLVDIRPAFVHTF 654

Query: 194  KTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLP 15
            KT+  ++ N SR++GVIEC+PL+ +GLE+TA+HMVIPYMPMLVPP +W  YDKG H +LP
Sbjct: 655  KTVS-NAKNTSRRYGVIECNPLVLKGLERTARHMVIPYMPMLVPPLNWTGYDKGGHFYLP 713

Query: 14   SYVM 3
            SYVM
Sbjct: 714  SYVM 717


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  391 bits (1004), Expect = e-106
 Identities = 205/360 (56%), Positives = 261/360 (72%), Gaps = 9/360 (2%)
 Frame = -3

Query: 1055 SGNLSHPKGYASVAEAICTTDTEEDISVMDANQGEFQHEQE--------KEPKIVPGVGN 900
            SG+L   + Y S AEAI +T +EEDI  +     E   E E        K+PK + G+G 
Sbjct: 105  SGSLGFLRSYGSAAEAIAST-SEEDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGV 163

Query: 899  AEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIA 720
             +Y LL+RRQIK+ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA
Sbjct: 164  GKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 223

Query: 719  ADQELCRQG-TKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEA 543
            A+Q+LC +G  +  YAP+FDQLPAEMMAV+TMHK+MG  M+    G+A+VVQAA  IGEA
Sbjct: 224  AEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEA 283

Query: 542  IEQEVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHI 363
            IE E RIH +LEKT KK     G  +  D P     ++ R+R              VR I
Sbjct: 284  IEHEARIHRFLEKT-KKSNALSGDLE--DTPGDIMKERERVRKKVKILMKKQKLQQVRKI 340

Query: 362  IKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIK 183
            +K  ++D+ KPWGQ+   KVG RLI++L+++AYIQPP DQL D PPDIRPAF H++KT  
Sbjct: 341  VK--QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKT-- 396

Query: 182  IDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
            ++++  SR++GVI+CDPL+ +GL+KTA+HMVIPYMPMLVPP+SW+ YDKGA+LFLPSY+M
Sbjct: 397  VETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIM 456


>emb|CBL87031.1| RNA polymerase [Nuphar advena]
          Length = 990

 Score =  389 bits (999), Expect = e-105
 Identities = 205/357 (57%), Positives = 261/357 (73%), Gaps = 13/357 (3%)
 Frame = -3

Query: 1034 KGYASVAEAICTTDTEEDISVMDANQG---EFQHE--QEKEPKI-------VPGVGNAEY 891
            +G+ASVAEA+ +TD  ED S ++  +G    F  E  +EKE +           +G A+Y
Sbjct: 102  QGFASVAEAVSSTD--EDTSAIEEIKGLVERFSEEVFKEKEGEFRGKRRTKFGNLGYAKY 159

Query: 890  ELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLRNCIAADQ 711
              LKRRQIKIETEAWEQAAKEYKEL+ DMC+ KLA NLPY+KSLFLGWFEPLR+ IA++Q
Sbjct: 160  NALKRRQIKIETEAWEQAAKEYKELMMDMCKNKLAXNLPYIKSLFLGWFEPLRDRIASEQ 219

Query: 710  ELCRQGT-KANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTAKVVQAACQIGEAIEQ 534
            E CR+G  +A Y PY ++LPAEMMAV+TMHK++G  M+S DHG A+VVQAAC+IG+AIE 
Sbjct: 220  EACRRGKCRAAYGPYLNRLPAEMMAVITMHKLVGLMMTSGDHGCARVVQAACRIGDAIEN 279

Query: 533  EVRIHNYLEKTRKKPGEAKGKSKEGDEPDPEAIKQARLRXXXXXXXXXXXXXXVRHIIKG 354
            E RIH++LEKT+KK   A+G   E +EP+    ++  LR              V  ++KG
Sbjct: 280  ESRIHSFLEKTKKK--HARGNMAE-EEPETVTKEKEFLRKKVTNLIKKQKLRQVTKLVKG 336

Query: 353  QEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDS 174
            +  D+  PWG EAHAKVG  LIELLI++AYIQPP+DQ  DGPPDIRPAF+HS++ +  + 
Sbjct: 337  K--DDSAPWGVEAHAKVGCHLIELLIETAYIQPPLDQTVDGPPDIRPAFRHSLRNVSKEQ 394

Query: 173  LNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESWIRYDKGAHLFLPSYVM 3
             + SR++GVIECDPL+ +GL+KTA+H VIPYMPMLVPP  W  YDKGAHLFLPSY+M
Sbjct: 395  SSNSRRYGVIECDPLVRKGLDKTARHTVIPYMPMLVPPLCWTGYDKGAHLFLPSYIM 451


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score =  388 bits (996), Expect = e-105
 Identities = 206/376 (54%), Positives = 264/376 (70%), Gaps = 18/376 (4%)
 Frame = -3

Query: 1076 GDTSVSFSGNLSHPKGYASVAEA-ICTTDTEEDISVMDANQGEFQ----HEQEKEP---- 924
            GD +  F  +    KGYA+ A A +  ++ E D+S  D  QG  +    H Q+ EP    
Sbjct: 69   GDLTKPFDLSPFFFKGYATAAAADVIPSNDESDLSGSDDFQGLMEQVNKHFQKMEPQFRP 128

Query: 923  ---KIVPGVGNAEYELLKRRQIKIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 753
               K+V G+G  +Y +LKRRQIK+ETEAWEQAA+EY+E+LEDMCEQKLAPNLPY+KSLFL
Sbjct: 129  QEKKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFL 188

Query: 752  GWFEPLRNCIAADQELCRQGTKANYAPYFDQLPAEMMAVVTMHKMMGFFMSSDDHGTA-K 576
            GWFEPLR+ I A+QELC++  + ++  +F  LPA+MMAV+TMHK+MG  M+ +    + +
Sbjct: 189  GWFEPLRDAIVAEQELCKRNLRVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIR 248

Query: 575  VVQAACQIGEAIEQEVRIHNYLEKTRKKPG-EAKGKSKEGDEPDPEAIK----QARLRXX 411
            VVQAA  +GEAIE E RIH +LEKT+K+   EAK    E D    E  K    Q +LR  
Sbjct: 249  VVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLRKK 308

Query: 410  XXXXXXXXXXXXVRHIIKGQEEDEIKPWGQEAHAKVGSRLIELLIQSAYIQPPVDQLSDG 231
                        VR I+KG   D+ +PWGQE H KVGSRLI+L+I++AYIQPP+DQ+ DG
Sbjct: 309  VTTLIKKQKVQQVRRIVKGH--DDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDG 366

Query: 230  PPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHMVIPYMPMLVPPESW 51
            PPDIRPAF H++KTI  D+   SR++GVIECDPL+ +GLEK+A+HMVIPYMPMLVPP +W
Sbjct: 367  PPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNW 426

Query: 50   IRYDKGAHLFLPSYVM 3
              YD+GAHLFLPSYVM
Sbjct: 427  TGYDQGAHLFLPSYVM 442