BLASTX nr result
ID: Papaver27_contig00016246
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00016246
(536 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 57 8e-14
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 57 2e-13
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 56 2e-13
ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica ... 54 4e-12
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911... 54 6e-12
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana] 54 6e-12
ref|YP_008999563.1| ribosomal protein S4 (mitochondrion) [Helian... 58 6e-12
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 54 1e-11
ref|XP_004253314.1| PREDICTED: ribosomal protein S4, mitochondri... 54 2e-11
ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259... 49 2e-11
ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum] 54 2e-11
ref|YP_008964100.1| truncated ribosomal protein S4 (mitochondrio... 44 3e-11
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc... 55 8e-11
gb|AGL75402.1| ribosomal protein S4 (mitochondrion) [Utricularia... 53 2e-10
ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygr... 49 3e-10
ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. m... 44 4e-10
ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgari... 44 4e-10
ref|YP_002608192.1| ribosomal protein S4 [Carica papaya] gi|1705... 57 6e-10
gb|AEK66732.1| ribosomal protein S4 [Ferrocalamus rimosivaginus]... 54 6e-10
gb|AAW47271.1| ribosomal protein S4 [Eichhornia crassipes] 54 6e-10
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 56.6 bits (135), Expect(3) = 8e-14
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 15/77 (19%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--AEIRRSHFCSVL 486
F +IPQARQLISHRRVCVNN + + ISFQ N+V + EI+RS + +L
Sbjct: 106 FCETIPQARQLISHRRVCVNNGMVNITHFKLSHGDIISFQENDVRTRGEEIKRSFYIEIL 165
Query: 487 --NIMGQVQIQLWRRTK 531
I+G+ WRRTK
Sbjct: 166 VEKIIGKFLDHPWRRTK 182
Score = 36.6 bits (83), Expect(3) = 8e-14
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLLLGNVW++EL+I
Sbjct: 9 RFKTCRLLLGNVWNRELTI 27
Score = 28.9 bits (63), Expect(3) = 8e-14
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQL T RKLSLFY H+G RE T+ ++ FLL++++
Sbjct: 52 NLNSYIQLQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNLET 95
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 57.4 bits (137), Expect(3) = 2e-13
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 18/80 (22%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSAEIRRSHFCSVL 486
F +IPQARQLISHRRVCVNN + S ISFQ N+ + EIRRS + +L
Sbjct: 111 FCETIPQARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEIRRSFYIEIL 170
Query: 487 --NIMGQV---QIQLWRRTK 531
I+G+ +++WRRTK
Sbjct: 171 VEKIIGKFLDHPVRMWRRTK 190
Score = 34.3 bits (77), Expect(3) = 2e-13
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNVW++EL+I
Sbjct: 14 RFKTCRLLSGNVWNRELTI 32
Score = 29.3 bits (64), Expect(3) = 2e-13
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 57 NLNSYIQLQTTRKLSLFYGDLPITEMHRGTER-----TSYIPFLLNLET 100
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gi|372450274|ref|YP_005090457.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197313|gb|AET62910.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197320|gb|AET62917.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
Length = 358
Score = 56.2 bits (134), Expect(3) = 2e-13
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 18/80 (22%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSAEIRRSHFCSVL 486
F +IPQARQLISHRRVCVNN + S ISFQ N+ + EIRR+ + +L
Sbjct: 111 FCETIPQARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEIRRAFYIEIL 170
Query: 487 --NIMGQV---QIQLWRRTK 531
I+G+ +++WRRTK
Sbjct: 171 VDKIIGKFLDHPVRMWRRTK 190
Score = 34.3 bits (77), Expect(3) = 2e-13
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNVW++EL+I
Sbjct: 14 RFKTCRLLSGNVWNRELTI 32
Score = 30.0 bits (66), Expect(3) = 2e-13
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 57 NMNSYIQLQTTRKLSLFYGDLPITEMHRGTER-----TSYIPFLLNLET 100
>ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group]
gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza
sativa Japonica Group]
Length = 352
Score = 53.9 bits (128), Expect(3) = 4e-12
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 16/78 (20%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--AEIRRSHFCSVL 486
F ++PQARQLISHRRVC+NN + + ISFQ N+ + EIRRS + +L
Sbjct: 102 FCDTLPQARQLISHRRVCLNNGLVTITHLKVSHGDLISFQENDARTRGEEIRRSFYIDIL 161
Query: 487 --NIMGQ-VQIQLWRRTK 531
I+G+ + +++WR+TK
Sbjct: 162 VGKIIGKLLPVRIWRKTK 179
Score = 37.0 bits (84), Expect(3) = 4e-12
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLLLGNVW++ELS+
Sbjct: 5 RFKTCRLLLGNVWNRELSL 23
Score = 25.4 bits (54), Expect(3) = 4e-12
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFYH----KGIHKRE*TTSEFVLFLLDVDS 337
N +S+I+L T RKLSL+Y + +H+ TS ++ FLL+ ++
Sbjct: 48 NLNSNIKLQTTRKLSLYYGDLPIREMHRGRERTS-YIPFLLNQET 91
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
ribosomal protein S4 [Brassica napus]
Length = 362
Score = 53.5 bits (127), Expect(3) = 6e-12
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 18/80 (22%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVV--SAEIRRSHFCSVL 486
F +IPQARQLISHRRVCVN + S ISFQ N + EIRRS + +L
Sbjct: 116 FLETIPQARQLISHRRVCVNKGMVSITHLKLSHGDIISFQENNAIIRGEEIRRSFYKEIL 175
Query: 487 --NIMGQV---QIQLWRRTK 531
I+G++ +++WRR+K
Sbjct: 176 VEKIIGKLLHQPLRMWRRSK 195
Score = 35.0 bits (79), Expect(3) = 6e-12
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+F++CRLLLGNVW++EL+I
Sbjct: 18 RFQTCRLLLGNVWNRELTI 36
Score = 26.9 bits (58), Expect(3) = 6e-12
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Frame = +2
Query: 224 SHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 65 SYIQLQTTRKLSLFYGDLPITEMHRGTKR-----TSYIPFLLNLET 105
>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
Length = 362
Score = 53.5 bits (127), Expect(3) = 6e-12
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 18/80 (22%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVV--SAEIRRSHFCSVL 486
F +IPQARQLISHRRVCVN + S ISFQ N + EIRRS + +L
Sbjct: 116 FLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEIL 175
Query: 487 --NIMGQV---QIQLWRRTK 531
I+G++ +++WRR+K
Sbjct: 176 VEKIIGKLLHQPLRMWRRSK 195
Score = 35.0 bits (79), Expect(3) = 6e-12
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+F++CRLLLGNVW++EL+I
Sbjct: 18 RFQTCRLLLGNVWNRELTI 36
Score = 26.9 bits (58), Expect(3) = 6e-12
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Frame = +2
Query: 224 SHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 65 SYIQLQTTRKLSLFYGDLPITEMHRGTKR-----TSYIPFLLNLET 105
>ref|YP_008999563.1| ribosomal protein S4 (mitochondrion) [Helianthus annuus]
gi|20271154|gb|AAM18532.1|AF375591_1 ribosomal protein
S4 [Helianthus annuus] gi|571031410|gb|AHF21055.1|
ribosomal protein S4 (mitochondrion) [Helianthus annuus]
Length = 331
Score = 58.2 bits (139), Expect(3) = 6e-12
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 20/90 (22%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRSI-SFQ-----------NNEVVSAE 456
TR IP+ F+ ++PQARQ ISHRR+CVNN + SI SFQ N+ ++ +E
Sbjct: 91 TRSDVIPVRLHFSETLPQARQPISHRRLCVNNVIVSITSFQVSQGDFISLKENDAIIYSE 150
Query: 457 IRRSHF--CSVLNIMGQ---VQIQLWRRTK 531
IRRS + SV I+G+ +++WRRTK
Sbjct: 151 IRRSFYIEISVSKIIGKSLDSPVRMWRRTK 180
Score = 33.9 bits (76), Expect(3) = 6e-12
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNVW++EL+I
Sbjct: 5 RFKTCRLLEGNVWNRELTI 23
Score = 23.5 bits (49), Expect(3) = 6e-12
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY 268
N +S+IQL T RKL LF+
Sbjct: 48 NLNSYIQLQTTRKLPLFH 65
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 53.5 bits (127), Expect(3) = 1e-11
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 18/80 (22%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSAEIRRSHFCSVL 486
F+ +IPQARQLISHRRVCVN + S ISFQ N+ + EIRR + +L
Sbjct: 109 FSETIPQARQLISHRRVCVNKGMVSITHFKVSHGDLISFQENDARIRGEEIRRFFYIEIL 168
Query: 487 --NIMGQV---QIQLWRRTK 531
I+G+ +++WRRTK
Sbjct: 169 VEKIIGKFLDHPVRMWRRTK 188
Score = 35.0 bits (79), Expect(3) = 1e-11
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+F++CRLLLGNVW++EL+I
Sbjct: 12 RFQTCRLLLGNVWNRELTI 30
Score = 25.8 bits (55), Expect(3) = 1e-11
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQL T RKLSL Y H+G + + ++ FLL++++
Sbjct: 55 NLNSYIQLQTTRKLSLNYGDLPITEMHRGTER-----TSYIPFLLNLET 98
>ref|XP_004253314.1| PREDICTED: ribosomal protein S4, mitochondrial-like [Solanum
lycopersicum]
Length = 449
Score = 54.3 bits (129), Expect(3) = 2e-11
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 18/88 (20%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 453
TR IP+ F +IPQARQ ISHRRVCVNN + + ISFQ N+ +
Sbjct: 195 TRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDARTRGE 254
Query: 454 EIRRSHF--CSVLNIMGQVQIQLWRRTK 531
EI+RS + SV I+G+ WRRTK
Sbjct: 255 EIKRSFYIEISVEKIIGKFLDHPWRRTK 282
Score = 34.3 bits (77), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNVW++EL+I
Sbjct: 109 RFKTCRLLSGNVWNRELTI 127
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQ T RKLSLFY H+G RE T+ ++ FLL+ ++
Sbjct: 152 NLNSYIQSQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNPET 195
>ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1|
ribosomal protein S4 [Cucurbita pepo]
Length = 356
Score = 48.9 bits (115), Expect(3) = 2e-11
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 18/80 (22%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAV-----------RSISFQNNE--VVSAEIRRSHF--CS 480
F+ ++PQARQLISHRRVCVN + IS + N+ + EIRRS + S
Sbjct: 109 FSSTLPQARQLISHRRVCVNKGMVPITHFKVSHGDLISLKENDARIRGEEIRRSFYIEIS 168
Query: 481 VLNIMGQV---QIQLWRRTK 531
V I+G+ +++WRRTK
Sbjct: 169 VEKIIGKFLDHPVRMWRRTK 188
Score = 36.6 bits (83), Expect(3) = 2e-11
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLLLGNVW++EL+I
Sbjct: 12 RFKTCRLLLGNVWNRELTI 30
Score = 28.5 bits (62), Expect(3) = 2e-11
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQL T RKLSLFY H+G + + ++ FLL++++
Sbjct: 55 NLNSYIQLQTTRKLSLFYGDLPITEMHRGRER-----TNYIPFLLNLET 98
>ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum]
Length = 349
Score = 54.3 bits (129), Expect(3) = 2e-11
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 18/88 (20%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 453
TR IP+ F +IPQARQ ISHRRVCVNN + + ISFQ N+ +
Sbjct: 95 TRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDARTRGE 154
Query: 454 EIRRSHF--CSVLNIMGQVQIQLWRRTK 531
EI+RS + SV I+G+ WRRTK
Sbjct: 155 EIKRSFYIEISVEKIIGKFLDHPWRRTK 182
Score = 34.3 bits (77), Expect(3) = 2e-11
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNVW++EL+I
Sbjct: 9 RFKTCRLLSGNVWNRELTI 27
Score = 25.4 bits (54), Expect(3) = 2e-11
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQ T RKLSLFY H+G RE T+ ++ FLL+ ++
Sbjct: 52 NLNSYIQSQTTRKLSLFYGDLPITEMHRG---RERTS--YIPFLLNPET 95
>ref|YP_008964100.1| truncated ribosomal protein S4 (mitochondrion) [Ajuga reptans]
gi|558697232|gb|AHA84986.1| truncated ribosomal protein
S4 (mitochondrion) [Ajuga reptans]
Length = 224
Score = 43.5 bits (101), Expect(3) = 3e-11
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 17/79 (21%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVSAE-IRRSHFCSVL- 486
F ++PQARQLISH RVCVN+ V + IS++ N+V + E IRRS + L
Sbjct: 95 FCQTLPQARQLISHGRVCVNHQVVNRIRWKVSPGDLISWKENDVRTHEKIRRSLYVRFLV 154
Query: 487 -NIMG---QVQIQLWRRTK 531
++G I++WRR K
Sbjct: 155 DKVIGGSLHRPIRVWRRKK 173
Score = 35.0 bits (79), Expect(3) = 3e-11
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +2
Query: 176 GARRDPVVGNAAPNQHSHIQLAT*RKLSLFYHKGIHKRE*TTSEFVLFLLDVD 334
G RR NQHS+IQL T RKLSLFY R F+ FLL+++
Sbjct: 31 GLRRKGRFLKMTKNQHSNIQLETTRKLSLFYGDLSVTRTDRRIYFIPFLLNLE 83
Score = 34.7 bits (78), Expect(3) = 3e-11
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FKSCRLL GNVW++EL+I
Sbjct: 5 RFKSCRLLGGNVWNRELTI 23
>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
Length = 362
Score = 55.5 bits (132), Expect(3) = 8e-11
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 21/91 (23%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVV--SA 453
TR IP+ F +IPQARQLISHRRVCVN + S ISFQ N +
Sbjct: 105 TRFDVIPLRLYFLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGE 164
Query: 454 EIRRSHFCSVL--NIMGQV---QIQLWRRTK 531
EIRRS + +L I+G++ +++WRR+K
Sbjct: 165 EIRRSFYKEILVEKIIGKLLHQPLRMWRRSK 195
Score = 32.7 bits (73), Expect(3) = 8e-11
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+F++CRLL GNVW++EL+I
Sbjct: 18 RFQTCRLLSGNVWNRELTI 36
Score = 23.5 bits (49), Expect(3) = 8e-11
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Frame = +2
Query: 224 SHIQLAT*RKLSLFY--------HKGIHKRE*TTSEFVLFLLDVDS 337
S+IQL T RKL FY H+G + + ++ FLL++++
Sbjct: 65 SYIQLQTTRKLPFFYGDLPITEMHRGTKR-----TSYIPFLLNLET 105
>gb|AGL75402.1| ribosomal protein S4 (mitochondrion) [Utricularia gibba]
Length = 370
Score = 52.8 bits (125), Expect(3) = 2e-10
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 17/87 (19%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRSI---SFQNNEVVS------AEIRR 465
TR IP+ F +IPQARQ ISHRRVCVNN + +I + E++S EIRR
Sbjct: 90 TRSDVIPVRLHFRETIPQARQPISHRRVCVNNRMVNIIHFKVSHGELISLKENDAREIRR 149
Query: 466 SHF--CSVLNIMGQV---QIQLWRRTK 531
S + SV I+G+ +++WRRTK
Sbjct: 150 SFYIEISVEKIIGKFLDRPVRMWRRTK 176
Score = 34.3 bits (77), Expect(3) = 2e-10
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNVW++EL+I
Sbjct: 5 RFKTCRLLSGNVWNRELTI 23
Score = 23.1 bits (48), Expect(3) = 2e-10
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY 268
N +S+IQ T RKLSLF+
Sbjct: 48 NLNSYIQSQTTRKLSLFH 65
>ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygrometrica]
gi|340549497|gb|AEK53318.1| ribosomal protein S4
(mitochondrion) [Boea hygrometrica]
Length = 329
Score = 49.3 bits (116), Expect(3) = 3e-10
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRSI---SFQNNEVVSAEIRRSHFCSV 483
TR IP+ F +IPQARQ ISHRRVCVNN + +I + +++S + + +
Sbjct: 90 TRSDVIPVRLHFRETIPQARQTISHRRVCVNNRMVNIIHFKVSHGDIISFQENDARTEKI 149
Query: 484 LNIMGQVQIQLWRRTK 531
+ +++WRRTK
Sbjct: 150 IGKFLDRPVRMWRRTK 165
Score = 36.6 bits (83), Expect(3) = 3e-10
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLLLGNVW++EL+I
Sbjct: 5 RFKTCRLLLGNVWNRELTI 23
Score = 23.9 bits (50), Expect(3) = 3e-10
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFYH----KGIHKRE*TTSEFVLFLLDVDS 337
N +S+IQ T RKLSLF+ +H+R ++ FLL+ ++
Sbjct: 48 NLNSYIQSQTTRKLSLFHRDLPITEMHRRR--KRSYIPFLLNPET 90
>ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|317905723|emb|CBJ14108.1| ribosomal protein S4 [Beta
vulgaris subsp. maritima] gi|319439803|emb|CBJ17515.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
Length = 315
Score = 43.5 bits (101), Expect(3) = 4e-10
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 15/69 (21%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNN--EVVSAEIRRSHFCSVL 486
F +IPQARQLISHR+VCVNN + + ISFQ N EIR+ + +L
Sbjct: 102 FCETIPQARQLISHRKVCVNNGIVNISHFKVSHGDIISFQENYARTRGEEIRKFFYIKIL 161
Query: 487 --NIMGQVQ 507
I+G+++
Sbjct: 162 VEKIIGKLR 170
Score = 33.5 bits (75), Expect(3) = 4e-10
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRL+ GNVW+KEL++
Sbjct: 5 RFKTCRLVSGNVWNKELTL 23
Score = 32.3 bits (72), Expect(3) = 4e-10
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 4/45 (8%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFYHK----GIHKRE*TTSEFVLFLLDVDS 337
N++S+IQL T RKLSLFY +H+R TS ++ FLL++++
Sbjct: 48 NRNSYIQLRTTRKLSLFYGNLPITKMHRRTKRTS-YIPFLLNLET 91
>ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|346683270|ref|YP_004842202.1| ribosomal protein S4
[Beta macrocarpa] gi|87248052|gb|ABD36080.1| ribosomal
protein S4 [Beta vulgaris subsp. vulgaris]
gi|148491424|dbj|BAA99356.2| ribosomal protein S4 [Beta
vulgaris subsp. vulgaris] gi|320148708|emb|CBJ23346.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|345500188|emb|CBX25007.1| ribosomal protein S4 [Beta
macrocarpa] gi|384939188|emb|CBL52035.1| ribosoma
lprotein S4 (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 315
Score = 43.5 bits (101), Expect(3) = 4e-10
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 15/69 (21%)
Frame = +1
Query: 346 FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNN--EVVSAEIRRSHFCSVL 486
F +IPQARQLISHR+VCVNN + + ISFQ N EIR+ + +L
Sbjct: 102 FCETIPQARQLISHRKVCVNNGIVNISHFKVSHGDIISFQENYARTRGEEIRKFFYIKIL 161
Query: 487 --NIMGQVQ 507
I+G+++
Sbjct: 162 VEKIIGKLR 170
Score = 33.5 bits (75), Expect(3) = 4e-10
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRL+ GNVW+KEL++
Sbjct: 5 RFKTCRLVSGNVWNKELTL 23
Score = 32.3 bits (72), Expect(3) = 4e-10
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 4/45 (8%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFYHK----GIHKRE*TTSEFVLFLLDVDS 337
N++S+IQL T RKLSLFY +H+R TS ++ FLL++++
Sbjct: 48 NRNSYIQLRTTRKLSLFYGNLPITKMHRRTKRTS-YIPFLLNLET 91
>ref|YP_002608192.1| ribosomal protein S4 [Carica papaya] gi|170522371|gb|ACB20481.1|
ribosomal protein S4, partial (mitochondrion) [Carica
papaya]
Length = 352
Score = 56.6 bits (135), Expect(3) = 6e-10
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 21/91 (23%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNE--VVSA 453
TR IP+ F ++PQARQ ISHRRVCVNN + S ISFQ N+ +
Sbjct: 95 TRLDVIPVRLHFRETLPQARQPISHRRVCVNNGMVSITRLKLSHGDIISFQENDARIRGE 154
Query: 454 EIRRSHF--CSVLNIMGQVQ---IQLWRRTK 531
EIRRS + SV I+G+ + +++WRRTK
Sbjct: 155 EIRRSFYIEISVEKIIGKFRNHPVRMWRRTK 185
Score = 28.9 bits (63), Expect(3) = 6e-10
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNV ++EL+I
Sbjct: 9 RFKTCRLLSGNVRNRELTI 27
Score = 23.1 bits (48), Expect(3) = 6e-10
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFY 268
N +S+IQ T RKLSLF+
Sbjct: 52 NLNSYIQSQTTRKLSLFH 69
>gb|AEK66732.1| ribosomal protein S4 [Ferrocalamus rimosivaginus]
gi|372861933|gb|AEX98086.1| ribosomal protein S4
(mitochondrion) [Ferrocalamus rimosivaginus]
Length = 344
Score = 54.3 bits (129), Expect(3) = 6e-10
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 19/89 (21%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEVVS--A 453
TR IP+ F+ ++PQARQ ISHRRVC+NN + + ISFQ N+ +
Sbjct: 91 TRSDVIPVRLHFSDTLPQARQPISHRRVCLNNGLVTITHLKVSHGDLISFQENDARTRGE 150
Query: 454 EIRRSHF--CSVLNIMGQ-VQIQLWRRTK 531
EIRRS + SV I+G+ + +++WRRTK
Sbjct: 151 EIRRSFYIDISVGKIIGKFLPVRIWRRTK 179
Score = 28.9 bits (63), Expect(3) = 6e-10
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLL GNV ++ELS+
Sbjct: 5 RFKTCRLLPGNVRNRELSL 23
Score = 25.4 bits (54), Expect(3) = 6e-10
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFYH----KGIHKRE*TTSEFVLFLLDVDS 337
N +S+I+L T RKLSL+Y + +H+ TS ++ FLL+ ++
Sbjct: 48 NLNSNIKLQTTRKLSLYYGDLPIREMHRGRERTS-YIPFLLNQET 91
>gb|AAW47271.1| ribosomal protein S4 [Eichhornia crassipes]
Length = 311
Score = 53.5 bits (127), Expect(3) = 6e-10
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 18/88 (20%)
Frame = +1
Query: 322 TRCGFIPI---FAMSIPQARQLISHRRVCVNNAVRS-----------ISFQNNEV-VSAE 456
TR IP+ F+ ++PQARQ ISHRRVCVNN + S ISF N+ +
Sbjct: 88 TRSDVIPVRLHFSDTLPQARQPISHRRVCVNNGLVSITHFQVSHGDQISFHENDAGEEKK 147
Query: 457 IRRSHF--CSVLNIMGQ-VQIQLWRRTK 531
IRRS + SV I+G+ + +++WRRTK
Sbjct: 148 IRRSFYIDISVGKIIGKFLPVRMWRRTK 175
Score = 31.6 bits (70), Expect(3) = 6e-10
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +3
Query: 87 QFKSCRLLLGNVWHKELSI 143
+FK+CRLLLGNV ++ELS+
Sbjct: 2 RFKTCRLLLGNVRNRELSL 20
Score = 23.5 bits (49), Expect(3) = 6e-10
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +2
Query: 215 NQHSHIQLAT*RKLSLFYH----KGIHKRE*TTSEFVLFLLDVDS 337
N++S+I+ T RKL LFY + +H+ TS ++ FLL+ ++
Sbjct: 45 NRNSNIKSQTTRKLPLFYGDLPIREMHRGRERTS-YIPFLLNQET 88