BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00013932
         (1910 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   658   0.0  
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   647   0.0  
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   639   e-180
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   637   e-180
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   636   e-180
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   631   e-178
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   629   e-177
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              629   e-177
ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Popu...   628   e-177
ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   624   e-176
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   621   e-175
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   619   e-174
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps...   613   e-173
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   611   e-172
ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis ...   608   e-171
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   607   e-171
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali...   607   e-171
dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   606   e-170
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   606   e-170
gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]             605   e-170

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  658 bits (1697), Expect = 0.0
 Identities = 359/515 (69%), Positives = 411/515 (79%), Gaps = 8/515 (1%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            FYYSD+TEKL + +EHGLT Y Q+ S KT LI AKK+S+ +
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHY-QITSTKT-LIVAKKSSN-Y 57

Query: 304  GPNFPS-NRHTQSINALTEHLESSSVPSTA-DEFWGSPDFXXXXXXXXXXXXXXXXAILL 477
            GP+FPS NR+TQSI AL EH++++S PSTA  +F    D                 A+LL
Sbjct: 58   GPSFPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVE----ALLL 113

Query: 478  LQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNKN-HVSNLTVL 654
            LQKSMLEKQWNLSFER  +      +S K I V  SG+SAR+RRI+ R KN   S  TV 
Sbjct: 114  LQKSMLEKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQ 173

Query: 655  RR-----KKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKE 819
                   K  + PELL NRL+GYVKGVVSEELL+H EVV LS  IKAGLSLEDHKSRLKE
Sbjct: 174  ANVFKQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKE 233

Query: 820  RLGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELAD 999
            RLG +PSDEQ+ATS++I R ELQ+  + CSLAREKLAMSNVRLVMSIAQ+YD+MGAE+AD
Sbjct: 234  RLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 293

Query: 1000 LVQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLI 1179
            LVQGGLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL+ENSR+LRLP+HLHERL LI
Sbjct: 294  LVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353

Query: 1180 RNAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLH 1359
            RNAKIRLEE G+TPS+DRIAE LN+S+KKV NATEAVSK+FSLDREAFPS+NGLPGET H
Sbjct: 354  RNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHH 413

Query: 1360 SYIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRR 1539
            SYIAD  LENNPWHGVD+W+L++EVN LI+ TL  REQ+IIRLYYGLD E LTWEDIS+R
Sbjct: 414  SYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKR 473

Query: 1540 IGLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            IGLSRERVRQVGLVALEKLK+AARK+KLEAMLVKH
Sbjct: 474  IGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  647 bits (1668), Expect = 0.0
 Identities = 345/517 (66%), Positives = 412/517 (79%), Gaps = 9/517 (1%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDS 300
            MMAT AVI            FYYSD+TEKL NV++HG+T Y+  A+ K ++I AKK+S+ 
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGIT-YYPTATTK-NVIVAKKSSN- 57

Query: 301  FGPNFPS-NRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILL 477
            +GP+FPS NR++ SI AL EH++++S  S    ++ + D                 A+LL
Sbjct: 58   YGPSFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFD---DFEEESSALDYSVEALLL 114

Query: 478  LQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNKNH-------- 633
            LQKSMLEKQWNLSFER  +   + +++NK I V  SG+SAR+RR++ R KN         
Sbjct: 115  LQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQ 174

Query: 634  VSNLTVLRRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRL 813
             S+   LR      P+LL NRL+GYVKGVVS+E+L HTEVV LS  I+AGLS EDHKSRL
Sbjct: 175  SSDFKFLRSVSS--PDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRL 232

Query: 814  KERLGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAEL 993
            KERLG EPSDEQ+A S+RI R +LQ+ L++CSLAREKLAMSNVRLVMSIAQKYD+MGAE+
Sbjct: 233  KERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEM 292

Query: 994  ADLVQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLS 1173
            ADLVQGGLIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL++NSR+LRLP+HLHERL 
Sbjct: 293  ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLG 352

Query: 1174 LIRNAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGET 1353
            LIRNAKIRLEE G+TPS+DRIAE LNMS++KV NATEA+SK+FSLDREAFPS+NGLPGET
Sbjct: 353  LIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGET 412

Query: 1354 LHSYIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDIS 1533
             HSYIAD R ENNPWHGVDEW+L+EEVN LI +TL  RE++IIRLY+GLD+ECLTWEDIS
Sbjct: 413  HHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDIS 472

Query: 1534 RRIGLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            +R+GLSRERVRQVGLVALEKLK+AARKR  EAMLVKH
Sbjct: 473  KRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  639 bits (1647), Expect = e-180
 Identities = 340/515 (66%), Positives = 402/515 (78%), Gaps = 7/515 (1%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDS 300
            MMAT AVI            FYYSDI+EK   +++ G     QV  G T  + A K S +
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSAN-SQV--GSTKNVVAAKKSSN 57

Query: 301  FGPNFPS-NRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILL 477
            + P+FPS NR TQ I AL EH++++   STA+  W  P                  A+LL
Sbjct: 58   YNPSFPSSNRQTQPIKALKEHVDTNFA-STAEP-WAEPP--NSIEEESSELDYSVEALLL 113

Query: 478  LQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNKNHVSNLTVLR 657
            LQKSMLEKQWNLSFER        ++++K + V  SG+SAR+RR++++ K    N +VL+
Sbjct: 114  LQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQ 173

Query: 658  R------KKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKE 819
            +      +  I PEL+ N L+GYVKGVVSEELLTH EVV LS KIK GLSL+DHK RLKE
Sbjct: 174  QNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233

Query: 820  RLGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELAD 999
            RLG EPS EQLA S+RI R ELQ++LMECSLAREKL MSNVRLVMSIAQ+YD+MGA++AD
Sbjct: 234  RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293

Query: 1000 LVQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLI 1179
            L+QGGLIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSR+LRLP+HLHERL LI
Sbjct: 294  LIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353

Query: 1180 RNAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLH 1359
            RNAK+RLEE G+TP+VDRIAE LNMS+KKV NATEA+ K+FSLDREAFPS+NGLPGET H
Sbjct: 354  RNAKLRLEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413

Query: 1360 SYIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRR 1539
            SYIAD R+ENNPWHGVD+W+L++EVN LI  TLG RE++IIRLYYGLDKECLTWEDIS+R
Sbjct: 414  SYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKR 473

Query: 1540 IGLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            IGLSRERVRQVGLVALEKLK+AARK+K+EAMLVKH
Sbjct: 474  IGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  637 bits (1644), Expect = e-180
 Identities = 341/515 (66%), Positives = 401/515 (77%), Gaps = 7/515 (1%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDS 300
            MMAT AVI            FYYSDI+EK   +++ G     QV  G T  + A K S +
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSAN-SQV--GSTKNVVAAKKSSN 57

Query: 301  FGPNFPS-NRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILL 477
            + P+FPS NR TQ I AL EH++++   STA+  W  P                  A+LL
Sbjct: 58   YNPSFPSSNRQTQPIKALKEHVDTNFA-STAEP-WAEPP--NSIEEESSELDYSVEALLL 113

Query: 478  LQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNKNHVSNLTVLR 657
            LQKSMLEKQWNLSFER        ++++K + V  SG+SAR+RR++++ K    N +V +
Sbjct: 114  LQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQ 173

Query: 658  R------KKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKE 819
            +      +  I PEL+ N L+GYVKGVVSEELLTH EVV LS KIK GLSL+DHK RLKE
Sbjct: 174  QNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233

Query: 820  RLGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELAD 999
            RLG EPS EQLA S+RI R ELQ++LMECSLAREKL MSNVRLVMSIAQ+YD+MGA++AD
Sbjct: 234  RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293

Query: 1000 LVQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLI 1179
            LVQGGLIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSR+LRLP+HLHERL LI
Sbjct: 294  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353

Query: 1180 RNAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLH 1359
            RNAK+RLEE G+TPSVDRIAE LNMS+KKV NATEA+ K+FSLDREAFPS+NGLPGET H
Sbjct: 354  RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH 413

Query: 1360 SYIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRR 1539
            SYIAD R+ENNPWHGVD+W+L++EVN LI  TLG RE++IIRLYYGLDKECLTWEDIS+R
Sbjct: 414  SYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKR 473

Query: 1540 IGLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            IGLSRERVRQVGLVALEKLK+AARK+K+EAMLVKH
Sbjct: 474  IGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
            gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
            [Theobroma cacao]
          Length = 508

 Score =  636 bits (1641), Expect = e-180
 Identities = 342/514 (66%), Positives = 406/514 (78%), Gaps = 6/514 (1%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDS 300
            MMAT AVI            F YSDI EKL   +++G + +HQ +S K SLI AKK+S+ 
Sbjct: 1    MMATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYG-SSHHQTSSTK-SLIVAKKSSNC 58

Query: 301  FGPNFPSNRHTQSINALTEHLESSSVPSTADE-FWGSPDFXXXXXXXXXXXXXXXXAILL 477
                  SNR  QSI AL EH++S+S+ STA+  F GS D                 A+LL
Sbjct: 59   SQSLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVE----ALLL 114

Query: 478  LQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNKNHVSNLTVLR 657
            LQKSMLEKQW LSFER         + +K I V  SG+SAR+RR +T+ K  + N ++++
Sbjct: 115  LQKSMLEKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQ 174

Query: 658  RKKQ-----IGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKER 822
               +     I PELL +RL+GYVKGVVS+ELL+H EVV LS KIKAGLSLE+H+ RLKER
Sbjct: 175  PNAKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKER 234

Query: 823  LGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADL 1002
            LG EPSDEQLATS++I R EL++ L+ECSLAREKLAMSNVRLVMSIAQ+YD+MGAE++DL
Sbjct: 235  LGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDL 294

Query: 1003 VQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIR 1182
            +QGGLIGLLRGIEKFDS+KG+KISTYVYWWIRQGVSRAL+ENSR+LRLP+HLHERL LIR
Sbjct: 295  IQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIR 354

Query: 1183 NAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHS 1362
            NAKIRLEE GITP++DRIAE LNMS+KKV NATEAVSK+FSLDR+AFPS+NGLPGET HS
Sbjct: 355  NAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHS 414

Query: 1363 YIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRI 1542
            YIAD  +EN PWHGVDEW+L++EVN LI+ TLG RE++IIRLYYGLDKE LTWEDIS+RI
Sbjct: 415  YIADNHVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKRI 474

Query: 1543 GLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            GLSRERVRQVGLVALEKLK+AARK+K+EAMLVKH
Sbjct: 475  GLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
            gi|462415485|gb|EMJ20222.1| hypothetical protein
            PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  631 bits (1627), Expect = e-178
 Identities = 336/516 (65%), Positives = 401/516 (77%), Gaps = 8/516 (1%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEH-GLTQYHQVASGKTSLIFAKKTSD 297
            MMAT AVI            FYYSDITEKL+++++H G    H   S   +++ A+K S+
Sbjct: 1    MMATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCH--FSSTKNVVTARKPSN 58

Query: 298  SFGPNFPSNRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILL 477
                   SNR  QSI AL EH++++S PS+A + W                     A+LL
Sbjct: 59   CSSRFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQE--LNDLEEESSDLEYSVEALLL 116

Query: 478  LQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRI-STRNKNHVSNLTVL 654
            LQKSMLEKQWNLSFE+K     + + ++K I V  SG+SAR+RR+ ST+ K    +  V+
Sbjct: 117  LQKSMLEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVM 176

Query: 655  RRKKQ------IGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLK 816
                       + PELL N ++GYVKGV+SE+LLTHTEVV LS KIK GLS+E+HKSRLK
Sbjct: 177  HPSTNKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLK 236

Query: 817  ERLGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELA 996
            ERLG EPSDEQLATS+RI R +LQ+ L+EC LAREKLAMSNVRLVMSIAQ+YD+MGAE+A
Sbjct: 237  ERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMA 296

Query: 997  DLVQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSL 1176
            DL+QGGLIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSR+LRLP+HLHERL L
Sbjct: 297  DLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 356

Query: 1177 IRNAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETL 1356
            IRNAKIRLEE GITPS+DRIAE LNMSKKKV NATEA+SK+FSLDR+AFPS+NGLPGET 
Sbjct: 357  IRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETH 416

Query: 1357 HSYIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISR 1536
            HSYIAD RLEN PWHGVD W+L+EEV+ LI+  LG RE++II+LYYGL+ ECLTWEDIS+
Sbjct: 417  HSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDISK 476

Query: 1537 RIGLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RIGLSRERVRQVGLVALEKLK+AARKR++EAML+KH
Sbjct: 477  RIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  629 bits (1622), Expect = e-177
 Identities = 349/512 (68%), Positives = 400/512 (78%), Gaps = 4/512 (0%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYN-VHEHGLTQYHQVASGKTSLIFAKKTSD 297
            MM T AVI             +YSD+ EKL + V++ G    H  +    +LI AKK S+
Sbjct: 1    MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFP--HHPSPPPKNLISAKKPSN 58

Query: 298  SFGPNFPSNRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILL 477
             + P+  SNR  QS+ AL EH+ES+S PSTAD     PD                 A LL
Sbjct: 59   -YTPS--SNRSIQSMKALKEHVESASAPSTAD-----PDLSSSSSEVEDEEYLVE-AFLL 109

Query: 478  LQKSMLEKQWNLSFERKRTVV---VSGEESNKNIEVARSGISARERRISTRNKNHVSNLT 648
            LQKSMLEKQWNLSFE +       +  +   K  EV  SG SAR+RRIS R K  ++  +
Sbjct: 110  LQKSMLEKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGR-KRVMNEKS 168

Query: 649  VLRRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLG 828
              R +  +G E   NRL+GYVKGVVSEELLTH +VV LS KIKAGL LEDHKSRLKER+G
Sbjct: 169  KSRVRAALGVE---NRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIG 225

Query: 829  YEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQ 1008
             EP+DEQ+A S+R+ R ELQ+ L+ECSLAREKLAMSNVRLVMSIAQ+YD+MGAE+ADLVQ
Sbjct: 226  SEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 285

Query: 1009 GGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNA 1188
            GGLIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSR+LRLPSHLHERLSLIRNA
Sbjct: 286  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNA 345

Query: 1189 KIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYI 1368
            KIRLEE GITPS+DRIAECLNMS+KKV NATEA+SK+FSLDREAFPS+NGLPGETLHSYI
Sbjct: 346  KIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYI 405

Query: 1369 ADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGL 1548
            AD RLENNPWHGVDEW+L++EVN LI+TTLG RE+DIIRLYYGLD ECLTWEDIS+RIGL
Sbjct: 406  ADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGL 465

Query: 1549 SRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            SRERVRQVGLVALEKLKNAARK ++EAMLVK+
Sbjct: 466  SRERVRQVGLVALEKLKNAARKGRMEAMLVKY 497


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  629 bits (1621), Expect = e-177
 Identities = 348/510 (68%), Positives = 400/510 (78%), Gaps = 1/510 (0%)
 Frame = +1

Query: 118  YMMATTAVIXXXXXXXXXXXXFYYSDITEKLYN-VHEHGLTQYHQVASGKTSLIFAKKTS 294
            +MM T AVI             +YSD+ EKL + V++ G    H  +    +LI AKK S
Sbjct: 71   HMMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFP--HHPSPPPKNLISAKKPS 128

Query: 295  DSFGPNFPSNRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAIL 474
            + + P+  SNR  QS+ AL EH+ES+S PSTAD     PD                 A L
Sbjct: 129  N-YTPS--SNRSIQSMKALKEHVESASAPSTAD-----PDLSSSSSEVEDEEYLVE-AFL 179

Query: 475  LLQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNKNHVSNLTVL 654
            LLQKSMLEKQWNLSF+ ++          K  EV  SG SAR+RRIS R K  ++  +  
Sbjct: 180  LLQKSMLEKQWNLSFKARQ----------KRREVTCSGTSARQRRISGR-KRVMNEKSKS 228

Query: 655  RRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGYE 834
            R +  +G E   NRL+GYVKGVVSEELLTH +VV LS KIKAGL LEDHKSRLKER+G E
Sbjct: 229  RVRAALGVE---NRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSE 285

Query: 835  PSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQGG 1014
            P+DEQ+A S+R+ R ELQ+ L+ECSLAREKLAMSNVRLVMSIAQ+YD+MGAE+ADLVQGG
Sbjct: 286  PTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 345

Query: 1015 LIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAKI 1194
            LIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSR+LRLPSHLHERLSLIRNAKI
Sbjct: 346  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKI 405

Query: 1195 RLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIAD 1374
            RLEE GITPS+DRIAECLNMS+KKV NATEA+SK+FSLDREAFPS+NGLPGETLHSYIAD
Sbjct: 406  RLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIAD 465

Query: 1375 TRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLSR 1554
             RLENNPWHGVDEW+L++EVN LI+TTLG RE+DIIRLYYGLD ECLTWEDIS+RIGLSR
Sbjct: 466  VRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSR 525

Query: 1555 ERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            ERVRQVGLVALEKLKNAARK ++EAMLVK+
Sbjct: 526  ERVRQVGLVALEKLKNAARKGRMEAMLVKY 555


>ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Populus trichocarpa]
            gi|550325184|gb|EEE95160.2| hypothetical protein
            POPTR_0013s07290g [Populus trichocarpa]
          Length = 499

 Score =  628 bits (1620), Expect = e-177
 Identities = 337/509 (66%), Positives = 402/509 (78%), Gaps = 1/509 (0%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDS 300
            MMAT + I            FY+SD+TEKL NV++HG+  Y Q+ + K S+I AKK+S  
Sbjct: 1    MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHY-QITTTK-SVIVAKKSS-K 57

Query: 301  FGPNFPSN-RHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILL 477
            +GP+FPS+ R+  S  AL E ++++S  ST   ++ + D                 A++L
Sbjct: 58   YGPSFPSSYRNPHSNKALKELIDTASASSTVATWFKTLD---DFEEESSVLDYSVEALIL 114

Query: 478  LQKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNKNHVSNLTVLR 657
            LQKSMLEKQWNLSFE   +     ++SNK I V  SG+SAR+RR++ + KN   +    +
Sbjct: 115  LQKSMLEKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKRKNQNQS----K 170

Query: 658  RKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGYEP 837
                I P+LL NRL+GYVKGVVS+E+L HTEVV LS  I+AGLSLEDHKS LKERLG EP
Sbjct: 171  FMSDISPDLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEP 230

Query: 838  SDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQGGL 1017
            SDEQLA S+RI R +LQ+ L++CSLAREKLAMSNVRLVMSIAQK D+MGAE+ADLVQ GL
Sbjct: 231  SDEQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGL 290

Query: 1018 IGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAKIR 1197
            IGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+EN R+LRLP+HLHERL LIRNAKIR
Sbjct: 291  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENPRTLRLPNHLHERLGLIRNAKIR 350

Query: 1198 LEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIADT 1377
            LEE G+TPS+DRIAE LNMS++KV NATEA+SK+FSLDREAFPS+NGLPGET HSYIAD 
Sbjct: 351  LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 410

Query: 1378 RLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1557
            RLENNPWHGVDEW+L+EEVN LI + L  RE++IIRLY+GLDKECLTWEDIS+R+GLSRE
Sbjct: 411  RLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDKECLTWEDISKRMGLSRE 470

Query: 1558 RVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RVRQVGLVALEKLK+AARK KLEAMLVKH
Sbjct: 471  RVRQVGLVALEKLKHAARKGKLEAMLVKH 499


>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  624 bits (1609), Expect = e-176
 Identities = 333/512 (65%), Positives = 396/512 (77%), Gaps = 5/512 (0%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            F  SDI E++  +++ G TQ+  V+    S I +KK S  F
Sbjct: 1    MATAAVIGISTGKRLLRSSFLASDI-ERVIPIYDFGATQFPAVSH--KSFIVSKK-SPGF 56

Query: 304  GPNFPSNRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLLQ 483
            GPN PSNR TQ INA+ EH+ + S  S++     +PDF                A++LLQ
Sbjct: 57   GPNSPSNRQTQYINAIKEHVNAPSSSSSSSTTEANPDFESSLE-----------ALILLQ 105

Query: 484  KSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNK-NHVSNLTVLRR 660
            KSMLEKQWNLSF++  T     EES K + V  SG SAR+RR S R   N  +   ++RR
Sbjct: 106  KSMLEKQWNLSFDQAGTSTDLCEESCKKLGVISSGASARQRRNSLRRPLNQRAGTVLVRR 165

Query: 661  KKQ----IGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLG 828
            KKQ    + PELL    +GYVKG+ ++ LL+H EVVHLS KI+AGLSLE+HKSRLKE+LG
Sbjct: 166  KKQATPIVSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSLEEHKSRLKEKLG 225

Query: 829  YEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQ 1008
            ++PSDE LA+S++I R EL + L+ECSLA+EKLAMSN+RLVMSIAQKYD+MG E+ADL+Q
Sbjct: 226  FDPSDELLASSLKISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQKYDNMGIEMADLIQ 285

Query: 1009 GGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNA 1188
            GGLIGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRA++ENSR+LRLP+HLHERLSLIRNA
Sbjct: 286  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLPTHLHERLSLIRNA 345

Query: 1189 KIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYI 1368
            KIRL+E G+TPS+ RIA+ LNMSKKKV NATEA++K+FSLDREAFP++NGLPGETLHSYI
Sbjct: 346  KIRLKEQGLTPSIHRIAKSLNMSKKKVKNATEAMTKVFSLDREAFPTLNGLPGETLHSYI 405

Query: 1369 ADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGL 1548
            AD  L NNPWHGVDEW L+ EVN LIS+TL  REQDIIRLYYGLDKEC TWEDISR+IGL
Sbjct: 406  ADNNLMNNPWHGVDEWLLKAEVNKLISSTLAEREQDIIRLYYGLDKECHTWEDISRKIGL 465

Query: 1549 SRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            SRERVRQVGLVALEKLKNAAR ++LEAMLVKH
Sbjct: 466  SRERVRQVGLVALEKLKNAARNKRLEAMLVKH 497


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
            gi|557097090|gb|ESQ37598.1| hypothetical protein
            EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  621 bits (1602), Expect = e-175
 Identities = 339/524 (64%), Positives = 409/524 (78%), Gaps = 16/524 (3%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKT--- 291
            MMAT AVI            FYYSD+TEK  +V++H  +QYH +AS ++  I AKKT   
Sbjct: 1    MMATAAVIGLNAGKRLLSSSFYYSDVTEKFLSVNDHCSSQYH-IASTRSG-ITAKKTPSS 58

Query: 292  SDSFGPNFPSN-RHTQSINALTEHLESSSVPSTADEFWGSP--DFXXXXXXXXXXXXXXX 462
            S ++ P+ PS+ RHTQS  AL E ++   V +++ + W  P  D                
Sbjct: 59   SSNYSPSLPSSSRHTQSAKALKETVD---VVASSVQPWLPPGSDKEMEGESYEDDLGHSV 115

Query: 463  XAILLLQKSMLEKQWNLSFERKRTVVVSGEE--SNKNIEVARSGISARERRISTRNKNHV 636
             A+LLLQKSMLEKQWNLSFE+  T     ++  + K   V  SGISAR+RRI  + K ++
Sbjct: 116  EALLLLQKSMLEKQWNLSFEKAATSESPSKKRMTRKKNPVTCSGISARQRRIGAKKKTNM 175

Query: 637  SNLTVLRR-------KKQIGPELL-HNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSL 792
            S++ V+         K  I  EL  +NR++GYV+GVVSE++L+H EVV LS KIK+GL L
Sbjct: 176  SHVKVVSEVSSGKQVKSVINSELFQNNRVKGYVRGVVSEDVLSHAEVVRLSKKIKSGLRL 235

Query: 793  EDHKSRLKERLGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKY 972
            +DHKSRLK+RLG EPSDEQLA S++I R ELQA LMEC LAREKLAMSNVRLVMSIAQ+Y
Sbjct: 236  DDHKSRLKDRLGCEPSDEQLAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSIAQRY 295

Query: 973  DHMGAELADLVQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPS 1152
            D+MGAE++DLVQGGLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL++NSR+LRLP+
Sbjct: 296  DNMGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPT 355

Query: 1153 HLHERLSLIRNAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSI 1332
            HLHERL LIRNAK+RL+E GITPS+DRIAE LNMS+KKV NATEAVSKIFSLDR+AFPS+
Sbjct: 356  HLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSL 415

Query: 1333 NGLPGETLHSYIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKEC 1512
            NGLPGET HSYIAD RLENNPWHG DEW+L++EV+ LIS TLG RE++IIRLYYGLDKEC
Sbjct: 416  NGLPGETHHSYIADNRLENNPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKEC 475

Query: 1513 LTWEDISRRIGLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            LTWEDIS+RIGLSRERVRQVGLVALEKLK+AARKRK+EAM++K+
Sbjct: 476  LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 519


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  619 bits (1596), Expect = e-174
 Identities = 332/509 (65%), Positives = 402/509 (78%), Gaps = 2/509 (0%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            ++YSDI EKL    + G T Y  V +   SLI AKK+S+ +
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPT--KSLIVAKKSSN-Y 57

Query: 304  GPNFP-SNRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLL 480
             P FP SN+  QSI AL EH++ +  P+ AD ++ S +                 A+LLL
Sbjct: 58   TPTFPASNQQNQSIKALKEHVDDA--PTIADPWFQSYN-SNDLEVESSEMGYSVEALLLL 114

Query: 481  QKSMLEKQWNLSFERKRTVVVSGEESN-KNIEVARSGISARERRISTRNKNHVSNLTVLR 657
            QKSMLEKQWNLSFER+     S +    + + V  SG+SAR+RR++T+ K  +     ++
Sbjct: 115  QKSMLEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKTAIKTCGAMQ 174

Query: 658  RKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGYEP 837
             K +I PELL +RL+GYVKG+VSEELL+H EVV+LS KIK GLSLE+HKSRLKE+LG EP
Sbjct: 175  LKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEP 234

Query: 838  SDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQGGL 1017
            SD+Q+ATS++I R EL+A ++ECSLAREKLAMSNVRLVMSIAQKYD++GAE+ DLVQGGL
Sbjct: 235  SDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGL 294

Query: 1018 IGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAKIR 1197
            IGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSR+LRLP+HLHERLSLIRNAK R
Sbjct: 295  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFR 354

Query: 1198 LEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIADT 1377
            LEE GITP++DRIA+ LNMS+KKV NATEA+SKI SLDREAFPS+NGL GET HSYIAD 
Sbjct: 355  LEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIADN 414

Query: 1378 RLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1557
            R+EN PW+GVDEW+L++EVN LI+ TL  RE++IIRLYYGL+KECLTWEDIS+RIGLSRE
Sbjct: 415  RVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDISKRIGLSRE 474

Query: 1558 RVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RVRQVGLVALEKLK+AARKR++EAML+KH
Sbjct: 475  RVRQVGLVALEKLKHAARKRQMEAMLLKH 503


>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|482570853|gb|EOA35041.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 521

 Score =  613 bits (1582), Expect = e-173
 Identities = 333/527 (63%), Positives = 407/527 (77%), Gaps = 20/527 (3%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDS- 300
            MAT AVI            FY+SD+TEK  +V++H  +QYH +AS K+ +   K +S S 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYH-IASTKSGITAKKASSSSN 59

Query: 301  FGPNFPS-NRHTQSINALTEHL------ESSSVPSTADEFWGSPDFXXXXXXXXXXXXXX 459
            + P+FPS NRHTQS  A+TE +      E   VP+  D+     +F              
Sbjct: 60   YSPSFPSSNRHTQSAKAVTESVDVVASTEQPWVPNVTDK-----EFEEGGYDDDVLIGHS 114

Query: 460  XXAILLLQKSMLEKQWNLSFERKRTVVVSGEESNKNIEV---ARSGISARERRISTRNKN 630
              A+LLLQKSMLEK WNLSFE+  +   SG+ + +  +V     SGISAR+RRI  + K 
Sbjct: 115  VEALLLLQKSMLEKSWNLSFEKAASSESSGKRTIRKKKVPVITCSGISARQRRIGAKKKT 174

Query: 631  HVSNLTVL-------RRKKQIGPELL-HNRLQG-YVKGVVSEELLTHTEVVHLSLKIKAG 783
            ++++   +       + +  +  EL  HNR++G YVKGV+SE++L+HTEVV LS KIK+G
Sbjct: 175  NMTSAKAVSDVSSGKQVRSVMSSELFQHNRVRGGYVKGVISEDVLSHTEVVRLSKKIKSG 234

Query: 784  LSLEDHKSRLKERLGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIA 963
            L L+DHKSRLK+RLG EPSDEQLA S++I R ELQA LMEC LAREKLAMSNVRLVMSIA
Sbjct: 235  LRLDDHKSRLKDRLGCEPSDEQLAISLKISRAELQAWLMECHLAREKLAMSNVRLVMSIA 294

Query: 964  QKYDHMGAELADLVQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLR 1143
            Q+YD++GAE++DLVQGGLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL++NSR+LR
Sbjct: 295  QRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLR 354

Query: 1144 LPSHLHERLSLIRNAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAF 1323
            LP+HLHERL LIRNAK+RL+E GITPS+DRIAE LNMS+KKV NATEAVSKIFSLDR+AF
Sbjct: 355  LPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAF 414

Query: 1324 PSINGLPGETLHSYIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLD 1503
            PS+NGLPGET HSYIAD RLENNPWHG DE +L+EEV+ LI+ TLG RE++IIRLYYGLD
Sbjct: 415  PSLNGLPGETHHSYIADNRLENNPWHGYDELALKEEVSKLITATLGEREREIIRLYYGLD 474

Query: 1504 KECLTWEDISRRIGLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            KECLTWEDIS+RIGLSRERVRQVGLVALEKLK+AARKRK+EAM++K+
Sbjct: 475  KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 521


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Glycine
            max] gi|571478813|ref|XP_006587676.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Glycine
            max]
          Length = 503

 Score =  611 bits (1575), Expect = e-172
 Identities = 328/509 (64%), Positives = 399/509 (78%), Gaps = 2/509 (0%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            ++YSD+ EKL    + G T Y  V +   SLI AKK+S+ +
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPT--KSLIAAKKSSN-Y 57

Query: 304  GPNFP-SNRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLL 480
             P FP SN+  QSI AL EH++ +  P+ AD ++ S +                 A+LLL
Sbjct: 58   TPTFPASNQQNQSIKALKEHVDDA--PTIADSWFQSCN-SNDLEVESSEMGYSVEALLLL 114

Query: 481  QKSMLEKQWNLSFERKRTVVVSGEESN-KNIEVARSGISARERRISTRNKNHVSNLTVLR 657
            QKSMLEKQWNLSFER+     S +    K + V  SG+SAR+RR++T+ K  +     ++
Sbjct: 115  QKSMLEKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRKTAIKTCGAMQ 174

Query: 658  RKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGYEP 837
             K +I PELL +RL+GYVKG+VSEELL+H EVV+LS +IK GLSLE+HKSRLKERLG EP
Sbjct: 175  LKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEP 234

Query: 838  SDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQGGL 1017
            SD+Q+A S++I R EL+A ++EC+LAREKLAMSNVRLVMSIAQKYD++GAE+ DLVQGGL
Sbjct: 235  SDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGL 294

Query: 1018 IGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAKIR 1197
            IGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSR+LRLP+HLHERLSLIRNAK R
Sbjct: 295  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFR 354

Query: 1198 LEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIADT 1377
            LEE GITP++DRIA+ LNMS+KKV NATEA+SK  SLDREAFPS+NG+ GET HSYIAD 
Sbjct: 355  LEERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQGETHHSYIADD 414

Query: 1378 RLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1557
            R+EN PW+GVDEW+L++EVN LI+ TL  RE++IIRLYYGLDKE LTWEDIS+RIGLSRE
Sbjct: 415  RVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKEGLTWEDISKRIGLSRE 474

Query: 1558 RVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RVRQVGLVALEKLK+AARKR++EAML+KH
Sbjct: 475  RVRQVGLVALEKLKHAARKRQMEAMLLKH 503


>ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 503

 Score =  608 bits (1569), Expect = e-171
 Identities = 325/514 (63%), Positives = 399/514 (77%), Gaps = 7/514 (1%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            FY+SD+TEK  +V++H  +QYH +AS K+ +   K +S ++
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYH-IASTKSGITAKKASSSNY 59

Query: 304  GPNFPS-NRHTQSINALTEHLESSSVPSTADEFW---GSPDFXXXXXXXXXXXXXXXXAI 471
             P+FPS NRHTQS  AL E ++ +S     ++ W   G+                   A+
Sbjct: 60   SPSFPSSNRHTQSAKALKESVDVAST----EKPWIHNGTDKELEEEGYDDDLIGHSVEAL 115

Query: 472  LLLQKSMLEKQWNLSFERKRTVVVSGEES--NKNIEVAR-SGISARERRISTRNKNHVSN 642
            LLLQKSMLEK WNLSFE+  +   S + +   K I V   SGISAR+RRI  + K ++++
Sbjct: 116  LLLQKSMLEKSWNLSFEKAASSESSSKRTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 175

Query: 643  LTVLRRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKER 822
            +      K +       +++GYVKGV+SE++L+H EVV LS KIK+GL L+DHKSRLK+R
Sbjct: 176  V------KAVSDVSSGKQVRGYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSRLKDR 229

Query: 823  LGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADL 1002
            LG EPSDEQLA S++I R ELQA LMEC LAREKLAMSNVRLVMSIAQ+YD++GAE++DL
Sbjct: 230  LGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDL 289

Query: 1003 VQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIR 1182
            VQGGLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL++NSR+LRLP+HLHERL LIR
Sbjct: 290  VQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIR 349

Query: 1183 NAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHS 1362
            NAK+RL+E GITPS+DRIAE LNMS+KKV NATEAVSKIFSLDR+AFPS+NGLPGET HS
Sbjct: 350  NAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPGETHHS 409

Query: 1363 YIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRI 1542
            YIAD R+ENNPWHG D+ +L+EEV+ LIS TLG RE++IIRLYYGLDKECLTWEDIS+RI
Sbjct: 410  YIADNRVENNPWHGYDDLALKEEVSKLISATLGEREREIIRLYYGLDKECLTWEDISKRI 469

Query: 1543 GLSRERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            GLSRERVRQVGLVALEKLK+AARKRK+EAM++K+
Sbjct: 470  GLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 503


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
            polymerase sigma factor sigA; Short=Sigma factor A;
            Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
            sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
            Full=RNA polymerase sigma factor sig2; Short=Atsig2;
            Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
            factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
            Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
            polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
            thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
            thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
            polymerase sigma factor [Arabidopsis thaliana]
            gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
            thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
            subunit 1 [Arabidopsis thaliana]
            gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
            [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
            AT1G64860 [Arabidopsis thaliana]
            gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 502

 Score =  607 bits (1566), Expect = e-171
 Identities = 328/511 (64%), Positives = 397/511 (77%), Gaps = 4/511 (0%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            FY+SD+TEK  +V++H  +QYH +AS K+  I AKK S+ +
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYH-IASTKSG-ITAKKASN-Y 57

Query: 304  GPNFPS-NRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLL 480
             P+FPS NRHTQS  AL E ++ +S            +                 AILLL
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 481  QKSMLEKQWNLSFERKRTVVVSGEES--NKNIEVAR-SGISARERRISTRNKNHVSNLTV 651
            QKSMLEK WNLSFE+  +    G+ +   K I V   SGISAR+RRI  + K +++++  
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 175

Query: 652  LRRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGY 831
                K +       +++GYVKGV+SE++L+H EVV LS KIK+GL L+DHKSRLK+RLG 
Sbjct: 176  ----KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGC 231

Query: 832  EPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQG 1011
            EPSDEQLA S++I R ELQA LMEC LAREKLAMSNVRLVMSIAQ+YD++GAE++DLVQG
Sbjct: 232  EPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQG 291

Query: 1012 GLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAK 1191
            GLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL++NSR+LRLP+HLHERL LIRNAK
Sbjct: 292  GLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAK 351

Query: 1192 IRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIA 1371
            +RL+E GITPS+DRIAE LNMS+KKV NATEAVSK+FSLDR+AFPS+NGLPGET HSYIA
Sbjct: 352  LRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIA 411

Query: 1372 DTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLS 1551
            DTRLENNPWHG D+ +L+EEV+ LIS TLG RE++IIRLYYGLDKECLTWEDIS+RIGLS
Sbjct: 412  DTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLS 471

Query: 1552 RERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RERVRQVGLVALEKLK+AARKRK+EAM++K+
Sbjct: 472  RERVRQVGLVALEKLKHAARKRKMEAMILKN 502


>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
          Length = 502

 Score =  607 bits (1564), Expect = e-171
 Identities = 328/511 (64%), Positives = 397/511 (77%), Gaps = 4/511 (0%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            FY+SD+TEK  +V++H  +QYH +AS K+  I AKK S+ +
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYH-IASTKSG-ITAKKASN-Y 57

Query: 304  GPNFPS-NRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLL 480
             P+FPS NRHTQS  AL E ++ +S            +                 AILLL
Sbjct: 58   RPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 481  QKSMLEKQWNLSFERKRTVVVSGEES--NKNIEVAR-SGISARERRISTRNKNHVSNLTV 651
            QKSMLEK WNLSFE+  +    G+ +   K I V   SGISAR+RRI  + K +++++  
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 175

Query: 652  LRRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGY 831
                K +       +++GYVKGV+SE++L+H EVV LS KIK+GL L+DHKSRLK+RLG 
Sbjct: 176  ----KAVSDVSSGKQVRGYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSRLKDRLGC 231

Query: 832  EPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQG 1011
            EPSDEQLA S++I R ELQA LMEC LAREKLAMSNVRLVMSIAQ+YD++GAE++DLVQG
Sbjct: 232  EPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQG 291

Query: 1012 GLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAK 1191
            GLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL++NSR+LRLP+HLHERL LIRNAK
Sbjct: 292  GLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAK 351

Query: 1192 IRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIA 1371
            +RL+E GITPS+DRIAE LNMS+KKV NATEAVSK+FSLDR+AFPS+NGLPGET HSYIA
Sbjct: 352  LRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIA 411

Query: 1372 DTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLS 1551
            DTRLENNPWHG D+ +L+EEV+ LIS TLG RE++IIRLYYGLDKECLTWEDIS+RIGLS
Sbjct: 412  DTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLS 471

Query: 1552 RERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RERVRQVGLVALEKLK+AARKRK+EAM++K+
Sbjct: 472  RERVRQVGLVALEKLKHAARKRKMEAMILKN 502


>dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 502

 Score =  606 bits (1563), Expect = e-170
 Identities = 328/511 (64%), Positives = 396/511 (77%), Gaps = 4/511 (0%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            FY+SD+TEK  +V++H  +QYH +AS K+  I AKK S+ +
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYH-IASTKSG-ITAKKASN-Y 57

Query: 304  GPNFPS-NRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLL 480
             P+FPS NRHTQS  AL E ++ +S            +                 AILLL
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 481  QKSMLEKQWNLSFERKRTVVVSGEES--NKNIEVAR-SGISARERRISTRNKNHVSNLTV 651
            QKSMLEK WNLSFE+  +    G+ +   K I V   SGISAR RRI  + K +++++  
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARPRRIGAKKKTNMTHV-- 175

Query: 652  LRRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGY 831
                K +       +++GYVKGV+SE++L+H EVV LS KIK+GL L+DHKSRLK+RLG 
Sbjct: 176  ----KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGC 231

Query: 832  EPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQG 1011
            EPSDEQLA S++I R ELQA LMEC LAREKLAMSNVRLVMSIAQ+YD++GAE++DLVQG
Sbjct: 232  EPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQG 291

Query: 1012 GLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAK 1191
            GLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL++NSR+LRLP+HLHERL LIRNAK
Sbjct: 292  GLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAK 351

Query: 1192 IRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIA 1371
            +RL+E GITPS+DRIAE LNMS+KKV NATEAVSK+FSLDR+AFPS+NGLPGET HSYIA
Sbjct: 352  LRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIA 411

Query: 1372 DTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLS 1551
            DTRLENNPWHG D+ +L+EEV+ LIS TLG RE++IIRLYYGLDKECLTWEDIS+RIGLS
Sbjct: 412  DTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLS 471

Query: 1552 RERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RERVRQVGLVALEKLK+AARKRK+EAM++K+
Sbjct: 472  RERVRQVGLVALEKLKHAARKRKMEAMILKN 502


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
            lycopersicum]
          Length = 509

 Score =  606 bits (1562), Expect = e-170
 Identities = 325/513 (63%), Positives = 392/513 (76%), Gaps = 6/513 (1%)
 Frame = +1

Query: 121  MMATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDS 300
            MMATTAVI            FYYSD+ EKL    +H L   HQV + K ++I AKK+SD 
Sbjct: 1    MMATTAVIGLSAGKRLLSSSFYYSDLNEKLSCSSDHSLP-CHQVPTVK-NVISAKKSSD- 57

Query: 301  FGPNFPSNRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLL 480
            + P+  S+R  QS+ AL EH++ +S PS    ++    F                 +LLL
Sbjct: 58   YSPSCVSSRKLQSVKALKEHVDIASDPSDVQSWFER--FEQLQNESDDEEDDSVEVLLLL 115

Query: 481  QKSMLEKQWNLSFERKRTVVVSGEESNKNIEVARSGISARERRISTRNK--NHVSNLTVL 654
            QKSMLEKQWNLS E   T     +++ K + +A SG SAR RR+ +R +     S+ T +
Sbjct: 116  QKSMLEKQWNLSAEETLTASTQRKKNCKKMHIACSGTSARRRRMDSRQRVLAQKSSATPI 175

Query: 655  RRKKQI----GPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKER 822
               K +    GP+LL NRL+GYVKG+VSEELLTHTEV+ LS KIK GL +E+ KSRLKER
Sbjct: 176  SATKPLRSILGPDLLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKER 235

Query: 823  LGYEPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADL 1002
            LG EPSD+QLA S+++ R +LQ+ L+ECSLARE+L+MSNVRLVMSIAQ+YD+MGAE+ADL
Sbjct: 236  LGCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADL 295

Query: 1003 VQGGLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIR 1182
            VQGGLIGLLRGIEKFD +KG+KISTYVYWWIRQGVSR L+ENSR+LRLP+HLHERL LIR
Sbjct: 296  VQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIR 355

Query: 1183 NAKIRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHS 1362
            NAK+RLEE GI PSV+ IA  LNMS+KKV NATEA SK++SLDRE FPS+NGLPG TLHS
Sbjct: 356  NAKMRLEEKGINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHS 415

Query: 1363 YIADTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRI 1542
            YIAD  LENNPWHGVD W+L++EVNNLIS+TL  RE++IIRLYYGLD ECLTWEDIS+RI
Sbjct: 416  YIADNHLENNPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWEDISKRI 475

Query: 1543 GLSRERVRQVGLVALEKLKNAARKRKLEAMLVK 1641
            GLSRERVRQVGLVALEKLK+AARKR+L+AML+K
Sbjct: 476  GLSRERVRQVGLVALEKLKHAARKRRLDAMLIK 508


>gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
          Length = 502

 Score =  605 bits (1561), Expect = e-170
 Identities = 327/511 (63%), Positives = 397/511 (77%), Gaps = 4/511 (0%)
 Frame = +1

Query: 124  MATTAVIXXXXXXXXXXXXFYYSDITEKLYNVHEHGLTQYHQVASGKTSLIFAKKTSDSF 303
            MAT AVI            FY+SD+TEK  +V++H  +QYH +AS K+  I AKK S+ +
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYH-IASTKSG-ITAKKASN-Y 57

Query: 304  GPNFPS-NRHTQSINALTEHLESSSVPSTADEFWGSPDFXXXXXXXXXXXXXXXXAILLL 480
             P+FPS NRHTQS  AL E ++ +S            +                 AILLL
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 481  QKSMLEKQWNLSFERKRTVVVSGEES--NKNIEVAR-SGISARERRISTRNKNHVSNLTV 651
            QKSMLEK WNLSFE+  +    G+ +   K I V   SGISAR+RRI  + K +++++  
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 175

Query: 652  LRRKKQIGPELLHNRLQGYVKGVVSEELLTHTEVVHLSLKIKAGLSLEDHKSRLKERLGY 831
                K +       +++GYVKGV+SE++L+H EVV LS KIK+GL L+DHKSRLK+RLG 
Sbjct: 176  ----KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGC 231

Query: 832  EPSDEQLATSMRIPRVELQAVLMECSLAREKLAMSNVRLVMSIAQKYDHMGAELADLVQG 1011
            EPSDEQLA S++I R ELQA LMEC LAREKLAMSNVRLVMSIAQ+Y+++GAE++DLVQG
Sbjct: 232  EPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYNNLGAEMSDLVQG 291

Query: 1012 GLIGLLRGIEKFDSTKGFKISTYVYWWIRQGVSRALMENSRSLRLPSHLHERLSLIRNAK 1191
            GLIGLLRGIEKFDS+KGF+ISTYVYWWIRQGVSRAL++NSR+LRLP+HLHERL LIRNAK
Sbjct: 292  GLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAK 351

Query: 1192 IRLEENGITPSVDRIAECLNMSKKKVTNATEAVSKIFSLDREAFPSINGLPGETLHSYIA 1371
            +RL+E GITPS+DRIAE LNMS+KKV NATEAVSK+FSLDR+AFPS+NGLPGET HSYIA
Sbjct: 352  LRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIA 411

Query: 1372 DTRLENNPWHGVDEWSLQEEVNNLISTTLGTREQDIIRLYYGLDKECLTWEDISRRIGLS 1551
            DTRLENNPWHG D+ +L+EEV+ LIS TLG RE++IIRLYYGLDKECLTWEDIS+RIGLS
Sbjct: 412  DTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLS 471

Query: 1552 RERVRQVGLVALEKLKNAARKRKLEAMLVKH 1644
            RERVRQVGLVALEKLK+AARKRK+EAM++K+
Sbjct: 472  RERVRQVGLVALEKLKHAARKRKMEAMILKN 502