BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00012372
         (3940 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   175   e-100
gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                       144   e-99 
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]        137   5e-99
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   137   5e-99
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   137   8e-99
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         137   8e-99
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   137   8e-99
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         137   1e-98
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         137   1e-98
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   137   1e-98
gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subc...   137   2e-98
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     137   2e-98
gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subc...   136   3e-98
gb|AAS01934.1| putative Integrase core domain containing protein...   136   3e-98
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc...   137   8e-98
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   137   8e-98
gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group...   135   2e-97
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     137   2e-97
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]         134   5e-97
gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subc...   135   5e-97

>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  175 bits (443), Expect(4) = e-100
 Identities = 117/314 (37%), Positives = 162/314 (51%), Gaps = 9/314 (2%)
 Frame = +1

Query: 1015 EHNNRILKEMIISMLISSGLPAALWGEAVLLTSIS*IKYPFKNQMKLHMVYGTVDDLLMN 1194
            E  NR LKEM+ +MLISS LP  +WGEA+L  +    K P K   K              
Sbjct: 632  ERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYT 691

Query: 1195 VSKCGGVXXXXXXXXXKELD*NQKC*LCFRIGYIEYTSTNRFLVVCSDF---------F* 1347
              +  G          K++    K   C  IGY   ++  RFLV  S+            
Sbjct: 692  YLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMES 751

Query: 1348 HWCEYYYGI*GC*VXXXXXXXXXXXXEMCC*SPRFIFK*SELILKEDEVDVEPKRSKIIR 1527
                ++  +  C              E    S R +    E   + +EV+VEP+RSK +R
Sbjct: 752  RNASFFEDVFPC-----------KSKEEPSSSKRML----ESQDQNEEVEVEPRRSKRVR 796

Query: 1528 LETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMDSVRWNQTWELSSLPPGCK 1707
             E S+  DF+T +   EPQT KEA+ STE   W EA  SE+DS+  N TWEL  LPPGCK
Sbjct: 797  TEKSFGPDFLTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCK 856

Query: 1708 TMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSNSIVTEITSVEILIVIAAI 1887
             +  K +FKRK  VD +++KY A+LV KGY+  EG+D+ D+ S VT I S+ +++ IAA+
Sbjct: 857  PLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAAL 916

Query: 1888 KNVEIHQMDVKTAF 1929
            +N+EIHQMD+K  +
Sbjct: 917  RNLEIHQMDMKEIY 930



 Score =  118 bits (296), Expect(4) = e-100
 Identities = 76/156 (48%), Positives = 96/156 (61%), Gaps = 20/156 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKH--IAQFIMESESIALDKA*EGAE 2804
            G  DANWI + ++SKS S Y FTL  G  V    +K   IA+  MESE IALDK  E AE
Sbjct: 1160 GYSDANWISNVKDSKSHSGYVFTLG-GAAVSWKSSKQTVIARSTMESEFIALDKCGEEAE 1218

Query: 2805 CLR*FLEDIPLWHRPVPAISIHCVSQAIIVKAK------------------K*LISIGVI 2930
             LR FLEDIP W +PVP I IHC SQ+ I +A+                  + L+S GVI
Sbjct: 1219 WLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNGKSRHIRRRHNTIRQLLSTGVI 1278

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLKLI 3038
            S+D++KSK+NIA  LTKGL +E+V+ +S G+ LK I
Sbjct: 1279 SVDYVKSKDNIADPLTKGLNRELVEKSSXGMXLKPI 1314



 Score = 97.1 bits (240), Expect(4) = e-100
 Identities = 54/129 (41%), Positives = 78/129 (60%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K+ LN   D+KD+G  DVILG++I+R SN            +L ++++ +   A T  D 
Sbjct: 1018 KNMLNSRFDMKDMGLADVILGIKIKRTSNELILSQSHYVDKILGKFDKDNSGVARTPVDV 1077

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            +  L KNKG  VS +EYS++IG LM LM+C  PDIAY V KLS Y  +P  ++   + RV
Sbjct: 1078 TLHLSKNKGESVSQVEYSRIIGSLMYLMSCTRPDIAYAVGKLSRYTSNPGAKHWQGIIRV 1137

Query: 2578 LWYLKYSFD 2604
            L YL+++ D
Sbjct: 1138 LKYLRFTRD 1146



 Score = 48.9 bits (115), Expect(4) = e-100
 Identities = 25/52 (48%), Positives = 32/52 (61%)
 Frame = +3

Query: 1950 KEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGFKL 2105
            KEIY++QPE F   G E KVC L       K A KQ H KF++V++  GFK+
Sbjct: 927  KEIYMEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKI 978



 Score = 53.1 bits (126), Expect(3) = 9e-15
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI----VLRGRLGTVNL*VNA*LASIGF 724
            ++ K Y + G++KLN  T   + ++       ++    +  GRLG VN      L ++  
Sbjct: 434  YVGKGYMSDGMWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNH 493

Query: 725  VPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCG-KRWL* 901
            +P F ++  HK E C E+K    SF  +V+ N++PL+LI   + D+   Q   G K ++ 
Sbjct: 494  IPTFQINSNHKCETCVEAKLTRSSFQ-SVERNTEPLDLIHSDICDLKFVQTRGGNKYFIT 552

Query: 902  LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQL 1006
                  +   +Y        +    +YK EV NQL
Sbjct: 553  FVDDSTKYCYVYLLKSKDEAIEKFVLYKTEVENQL 587



 Score = 48.9 bits (115), Expect(3) = 9e-15
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
 Frame = +3

Query: 12  GKGENIERNSKHGLHDK-----GIFHKPESEITLVKGECYVCKISSHAAVNCR---QHXX 167
           G+    + N+  G   K     GI  KP+ +     G+C+ C    H +V+CR   ++  
Sbjct: 247 GQSSKAKTNNNKGKGSKLGPKGGISKKPKFQ-----GKCFNCGKQGHKSVDCRLPKKNKP 301

Query: 168 XXXXXXXXXXXETN*NEFGGMMSEVILI-TNVRDQ*VDSGATKNVC*NRDLFTSYHRIGD 344
                           +   ++SEV L+ +N ++  +D+GAT++VC ++ +F+++  I +
Sbjct: 302 KEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIEN 361

Query: 345 VEKLLLSNSYAIEVA*KEKVEQKLIS 422
            EK+ + NS   E+  + KV  K+ S
Sbjct: 362 GEKVFMGNSATSEIKGQGKVILKMTS 387



 Score = 27.7 bits (60), Expect(3) = 9e-15
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTR 549
           +VP I +NLVS S+++   F+++  S K+V+++
Sbjct: 398 YVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSK 430


>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score =  144 bits (364), Expect(7) = e-99
 Identities = 77/154 (50%), Positives = 102/154 (66%)
 Frame = +1

Query: 1468 ELILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSE 1647
            E++L+ED+ D  PKRSK  R+E S+  DFI  L    P T  EA  S++   W EA  +E
Sbjct: 717  EIVLEEDDNDA-PKRSKRQRVEKSFGDDFIVYLVDDTPTTIAEAFASSDADDWKEAVHNE 775

Query: 1648 MDSVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLD 1827
            MDS+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D
Sbjct: 776  MDSILSNGTWEITDRPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFD 835

Query: 1828 SNSIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            + S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 836  TYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAF 869



 Score = 88.6 bits (218), Expect(7) = e-99
 Identities = 50/125 (40%), Positives = 75/125 (60%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L+++ D+KDLG  DVIL +++ +               VLKR+  S+CKP+ T YD 
Sbjct: 967  KSFLSKSFDMKDLGEADVILNIKLIKADGGITLSQSHYVEKVLKRFGFSECKPSPTPYDP 1026

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S +L+KNK  G+  L YS+++G LM L     PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1027 SVTLRKNKRIGLDQLRYSQIVGSLMYLAGATRPDISFAVSKLSRFMSNPGTDHWHALERV 1086

Query: 2578 LWYLK 2592
            + YL+
Sbjct: 1087 MRYLQ 1091



 Score = 84.0 bits (206), Expect(7) = e-99
 Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D++E  +TS Y FT+  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1109 GYSDSNWISDADELYATSGYVFTIGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEW 1168

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +P+PAI ++C +Q +I K              K+ L S+      GVI
Sbjct: 1169 LRELLMDLPVVEKPIPAILMNCDNQTVIAKVTSSKDNGKSSRHVKRRLKSVRKLRNSGVI 1228

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            S+ +I + +N+A   TKGL + +++ ASR +G++
Sbjct: 1229 SVTYISTDKNLADPFTKGLPRNVIEIASREMGMR 1262



 Score = 52.8 bits (125), Expect(7) = e-99
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGFKL 2105
            F N EL +EIY++QP+ FVVKG E KVC L       K A KQ H KF+  +  +GF +
Sbjct: 869  FLNGELDEEIYMEQPDGFVVKGQESKVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFAI 927



 Score = 51.2 bits (121), Expect(7) = e-99
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +3

Query: 1074 TCGLV----GGGSPLN*YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLP 1241
            TCGL     G     + ++LN++P  + ++TPY  W GR PS   ++ WG + K+ +P+ 
Sbjct: 573  TCGLSKAWWGEAVLTSCHVLNRIPMGKEEKTPYEKWVGRKPSLSYLRTWGCMAKVNVPIN 632

Query: 1242 KRTRLKPK 1265
            K+ +L P+
Sbjct: 633  KKRKLGPR 640



 Score = 40.0 bits (92), Expect(7) = e-99
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            INE+D+ VY        VI+CLYVDD+L   TNIDVIN  K+
Sbjct: 927  INEADRCVYYRCGGGEGVILCLYVDDILIFGTNIDVINEVKS 968



 Score = 37.4 bits (85), Expect(7) = e-99
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVY 1405
            + VDCVF+ G  S  +   F +      D+ V+ I ESRDA FFEH++
Sbjct: 640  RTVDCVFL-GYASCSIAYRFLVVKSEVPDVYVDTIMESRDATFFEHIF 686



 Score = 39.7 bits (91), Expect(3) = 9e-07
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 9/160 (5%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKL-----NGKTDD---VNVVDSCDIFV*LIVLRGRLGTVNL*VNA*LA 712
            F+ K Y   GL++      N K+ +    NV D   I+        RL  +N    + LA
Sbjct: 359  FIGKGYDCGGLFRFSLLDFNNKSVNHICANVDDLASIW------HSRLCHINFGSMSRLA 412

Query: 713  SIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGKR 892
            ++  +P  ++    K   C +SK   K      + +  PLELI   L +M+      GKR
Sbjct: 413  TMSLIPNITIVKGSKCHSCVQSKQPRKPHKAAEERHLAPLELIHSDLCEMNGVLTKGGKR 472

Query: 893  W-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            + + L     R   +Y        L   K+YK EV NQLE
Sbjct: 473  YFMTLIDDASRFCYVYLLKTKDEALDYFKIYKAEVENQLE 512



 Score = 35.0 bits (79), Expect(3) = 9e-07
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTR 549
           HVPSI +NLVS +++    FK+++ES KLVV++
Sbjct: 323 HVPSIHKNLVSGTLLCRDGFKVVLESNKLVVSK 355



 Score = 27.3 bits (59), Expect(3) = 9e-07
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
 Frame = +3

Query: 3   SKDGKGEN----IERNSKHGLHDKGIFHKPESEITLVKGE------CYVCKISSHAAVNC 152
           SK G+G +    +++N   G   K   +KP       K +      C+ C  + H A +C
Sbjct: 163 SKGGEGHSSANMVQKNHNKG-KGKPKSNKPNKTTNFKKKKNKAELTCFACGEAGHFAKDC 221

Query: 153 --RQHXXXXXXXXXXXXXETN*NEFGGMMSEVILITNVRDQ*VDSGATKNVC*NRDLFTS 326
             R                   ++  G +  +  +       +D+GA  +VC + +LF+S
Sbjct: 222 PDRADRRGKKGNVNTVIASNEEDKGYGNLPFIFSVFQSPSWWLDTGANVHVCSDINLFSS 281

Query: 327 YHRIGDVEKLLLSNSYA 377
           Y    D   L+ + S+A
Sbjct: 282 YQGARDSSVLMGNGSHA 298


>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
          Length = 1314

 Score =  137 bits (345), Expect(7) = 5e-99
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 728  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 787

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 788  SIIANGTWEVTEQPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 847

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 848  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 879



 Score = 92.4 bits (228), Expect(7) = 5e-99
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 20/156 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1119 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1178

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1179 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1238

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLKLI 3038
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+ I
Sbjct: 1239 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1274



 Score = 89.4 bits (220), Expect(7) = 5e-99
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 977  KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1036

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1037 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1096

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1097 MRYLKGTVEL 1106



 Score = 54.7 bits (130), Expect(7) = 5e-99
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 600  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 650



 Score = 52.4 bits (124), Expect(7) = 5e-99
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 879  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 935



 Score = 37.7 bits (86), Expect(7) = 5e-99
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 937  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 978



 Score = 32.3 bits (72), Expect(7) = 5e-99
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V II ESRDA FFE  +     H
Sbjct: 650  KTVDCVFL-GYAHHSIAYRFLIVKSEVLDMHVGIIMESRDATFFESFFPMKDTH 702


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  137 bits (345), Expect(7) = 5e-99
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.0 bits (227), Expect(7) = 5e-99
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1300



 Score = 91.7 bits (226), Expect(7) = 5e-99
 Identities = 54/130 (41%), Positives = 77/130 (59%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S SL+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1065 SLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 54.7 bits (130), Expect(7) = 5e-99
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 51.2 bits (121), Expect(7) = 5e-99
 Identities = 27/57 (47%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FV++G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 963



 Score = 38.5 bits (88), Expect(7) = 5e-99
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TNI+VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVINEVKS 1006



 Score = 30.8 bits (68), Expect(7) = 5e-99
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 44.7 bits (104), Expect(3) = 2e-07
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 510  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 550



 Score = 34.7 bits (78), Expect(3) = 2e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 25.4 bits (54), Expect(3) = 2e-07
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  137 bits (345), Expect(7) = 8e-99
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.4 bits (228), Expect(7) = 8e-99
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 20/156 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLKLI 3038
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+ I
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302



 Score = 91.7 bits (226), Expect(7) = 8e-99
 Identities = 54/130 (41%), Positives = 77/130 (59%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S SL+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1065 SLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 54.7 bits (130), Expect(7) = 8e-99
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 50.1 bits (118), Expect(7) = 8e-99
 Identities = 27/57 (47%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FV++G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTFAGF 963



 Score = 38.5 bits (88), Expect(7) = 8e-99
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TNI+VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVINEVKS 1006



 Score = 30.8 bits (68), Expect(7) = 8e-99
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 44.7 bits (104), Expect(3) = 2e-07
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 510  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 550



 Score = 34.7 bits (78), Expect(3) = 2e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 25.4 bits (54), Expect(3) = 2e-07
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  137 bits (346), Expect(7) = 8e-99
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAICSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.0 bits (227), Expect(7) = 8e-99
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1300



 Score = 89.4 bits (220), Expect(7) = 8e-99
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1065 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 54.7 bits (130), Expect(7) = 8e-99
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 53.1 bits (126), Expect(7) = 8e-99
 Identities = 28/57 (49%), Positives = 36/57 (63%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  ++ +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGF 963



 Score = 37.7 bits (86), Expect(7) = 8e-99
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1006



 Score = 30.8 bits (68), Expect(7) = 8e-99
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 45.1 bits (105), Expect(3) = 1e-07
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKSSKCHSCVQSKQPRKPHKAAKERNLAPLELLHSDLCEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK E+ NQL+
Sbjct: 510  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEIENQLD 550



 Score = 34.7 bits (78), Expect(3) = 1e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 25.4 bits (54), Expect(3) = 1e-07
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  137 bits (345), Expect(7) = 8e-99
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.0 bits (227), Expect(7) = 8e-99
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1300



 Score = 91.7 bits (226), Expect(7) = 8e-99
 Identities = 54/130 (41%), Positives = 77/130 (59%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S SL+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1065 SLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 54.7 bits (130), Expect(7) = 8e-99
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 51.2 bits (121), Expect(7) = 8e-99
 Identities = 27/57 (47%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FV++G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 963



 Score = 37.7 bits (86), Expect(7) = 8e-99
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1006



 Score = 30.8 bits (68), Expect(7) = 8e-99
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 44.7 bits (104), Expect(3) = 2e-07
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 510  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 550



 Score = 34.7 bits (78), Expect(3) = 2e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 25.4 bits (54), Expect(3) = 2e-07
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  137 bits (345), Expect(7) = 1e-98
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.4 bits (228), Expect(7) = 1e-98
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 20/156 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLKLI 3038
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+ I
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302



 Score = 87.8 bits (216), Expect(7) = 1e-98
 Identities = 52/130 (40%), Positives = 75/130 (57%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++   L RV
Sbjct: 1065 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRVLERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 56.6 bits (135), Expect(7) = 1e-98
 Identities = 23/51 (45%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            Y+LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  YVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 52.4 bits (124), Expect(7) = 1e-98
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 963



 Score = 37.7 bits (86), Expect(7) = 1e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1006



 Score = 30.8 bits (68), Expect(7) = 1e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 44.7 bits (104), Expect(3) = 1e-07
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 510  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 550



 Score = 34.7 bits (78), Expect(3) = 1e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 25.8 bits (55), Expect(3) = 1e-07
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPSVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  137 bits (345), Expect(7) = 1e-98
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.4 bits (228), Expect(7) = 1e-98
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 20/156 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLKLI 3038
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+ I
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302



 Score = 89.4 bits (220), Expect(7) = 1e-98
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1065 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 54.7 bits (130), Expect(7) = 1e-98
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 52.4 bits (124), Expect(7) = 1e-98
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 963



 Score = 37.7 bits (86), Expect(7) = 1e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1006



 Score = 30.8 bits (68), Expect(7) = 1e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  137 bits (345), Expect(7) = 1e-98
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 549  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 608

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 609  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 668

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 669  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 700



 Score = 92.4 bits (228), Expect(7) = 1e-98
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 940  GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 999

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1000 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1059

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1060 TLDYIQTARNLADPFTKGLSRNVINNASKEMGLR 1093



 Score = 89.4 bits (220), Expect(7) = 1e-98
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 798  KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 857

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 858  SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 917

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 918  MRYLKGTVEL 927



 Score = 54.7 bits (130), Expect(7) = 1e-98
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 421  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 471



 Score = 52.4 bits (124), Expect(7) = 1e-98
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 700  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 756



 Score = 37.7 bits (86), Expect(7) = 1e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 758  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 799



 Score = 30.8 bits (68), Expect(7) = 1e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 471  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 523


>gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2027

 Score =  137 bits (345), Expect(7) = 2e-98
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 951  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 1010

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 1011 SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 1070

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 1071 SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 1102



 Score = 92.0 bits (227), Expect(7) = 2e-98
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1342 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1401

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1402 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1461

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1462 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1495



 Score = 89.4 bits (220), Expect(7) = 2e-98
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1200 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1259

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1260 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1319

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1320 MRYLKDTVEL 1329



 Score = 54.7 bits (130), Expect(7) = 2e-98
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 823  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 873



 Score = 52.4 bits (124), Expect(7) = 2e-98
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 1102 FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 1158



 Score = 37.7 bits (86), Expect(7) = 2e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 1160 VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1201



 Score = 30.8 bits (68), Expect(7) = 2e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 873  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 925



 Score = 49.3 bits (116), Expect(3) = 2e-07
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
 Frame = +2

Query: 659  VLRGRLGTVNL*VNA*LASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLEL 838
            V   RL  +N  + + L+S+  +PKFS+    K   C +SK   K      + N  PLEL
Sbjct: 628  VWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLEL 687

Query: 839  IQLCLVDMSSTQNHCGKRW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            +   L +M+    +CGKR+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 688  LHSDLCEMNGVLTNCGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 745



 Score = 32.7 bits (73), Expect(3) = 2e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTR 549
           HVPSI  NLVS S +    FK++ ES K+VV++
Sbjct: 556 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSK 588



 Score = 22.3 bits (46), Expect(3) = 2e-07
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 437 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 496

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+ A  +VC +  LF+SY        L+ + S+A
Sbjct: 497 VDTRANVHVCADISLFSSYQVARGSTVLMGNGSHA 531


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  137 bits (345), Expect(7) = 2e-98
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 845  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 904

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 905  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 964

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 965  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 996



 Score = 92.0 bits (227), Expect(7) = 2e-98
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1236 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1295

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1296 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1355

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1356 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1389



 Score = 89.4 bits (220), Expect(7) = 2e-98
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1094 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1153

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1154 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1213

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1214 MRYLKGTVEL 1223



 Score = 54.3 bits (129), Expect(7) = 2e-98
 Identities = 21/51 (41%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN++P    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 717  HVLNRIPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 767



 Score = 52.4 bits (124), Expect(7) = 2e-98
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 996  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 1052



 Score = 37.7 bits (86), Expect(7) = 2e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 1054 VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1095



 Score = 30.8 bits (68), Expect(7) = 2e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 767  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 819



 Score = 44.7 bits (104), Expect(3) = 2e-07
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 486  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 538

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 539  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 598

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 599  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 639



 Score = 34.7 bits (78), Expect(3) = 2e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 450 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 486



 Score = 25.4 bits (54), Expect(3) = 2e-07
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 331 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 390

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 391 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 425


>gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1197

 Score =  136 bits (342), Expect(7) = 3e-98
 Identities = 70/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P++SK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 651  LVSEEDVSEAPRKSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 710

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 711  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 770

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 771  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 802



 Score = 91.3 bits (225), Expect(7) = 3e-98
 Identities = 53/130 (40%), Positives = 77/130 (59%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 900  KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 959

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI+++VSKLS +  +P  ++  AL RV
Sbjct: 960  SLLLRKNKRIAGNQLEYSQIIGSLMYLASATRPDISFVVSKLSRFTSNPGDDHWRALERV 1019

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1020 MCYLKGTVEL 1029



 Score = 91.3 bits (225), Expect(7) = 3e-98
 Identities = 61/154 (39%), Positives = 87/154 (56%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME E  ALD A   AE 
Sbjct: 1042 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEVELTALDTATVEAEW 1101

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1102 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1161

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1162 TLDYIQTARNLADPFTKGLSRNVINNASKEMGLR 1195



 Score = 54.7 bits (130), Expect(7) = 3e-98
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 523  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 573



 Score = 51.6 bits (122), Expect(7) = 3e-98
 Identities = 28/57 (49%), Positives = 34/57 (59%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+     +GF
Sbjct: 802  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTFTSAGF 858



 Score = 37.7 bits (86), Expect(7) = 3e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 860  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 901



 Score = 30.8 bits (68), Expect(7) = 3e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 573  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 625


>gb|AAS01934.1| putative Integrase core domain containing protein [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  136 bits (342), Expect(7) = 3e-98
 Identities = 70/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P++SK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 634  LVSEEDVSEAPRKSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 693

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 694  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 753

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 754  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 785



 Score = 91.3 bits (225), Expect(7) = 3e-98
 Identities = 53/130 (40%), Positives = 77/130 (59%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 883  KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 942

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI+++VSKLS +  +P  ++  AL RV
Sbjct: 943  SLLLRKNKRIAGNQLEYSQIIGSLMYLASATRPDISFVVSKLSRFTSNPGDDHWRALERV 1002

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1003 MCYLKGTVEL 1012



 Score = 91.3 bits (225), Expect(7) = 3e-98
 Identities = 61/154 (39%), Positives = 87/154 (56%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME E  ALD A   AE 
Sbjct: 1025 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEVELTALDTATVEAEW 1084

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1085 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1144

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1145 TLDYIQTARNLADPFTKGLSRNVINNASKEMGLR 1178



 Score = 54.7 bits (130), Expect(7) = 3e-98
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 506  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 556



 Score = 51.6 bits (122), Expect(7) = 3e-98
 Identities = 28/57 (49%), Positives = 34/57 (59%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+     +GF
Sbjct: 785  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTFTSAGF 841



 Score = 37.7 bits (86), Expect(7) = 3e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 843  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 884



 Score = 30.8 bits (68), Expect(7) = 3e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 556  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 608


>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1518

 Score =  137 bits (345), Expect(7) = 8e-98
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 972  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 1031

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 1032 SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 1091

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 1092 SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 1123



 Score = 92.0 bits (227), Expect(7) = 8e-98
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1363 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1422

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1423 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1482

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1483 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1516



 Score = 89.4 bits (220), Expect(7) = 8e-98
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1221 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1280

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1281 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1340

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1341 MRYLKGTVEL 1350



 Score = 52.4 bits (124), Expect(7) = 8e-98
 Identities = 21/51 (41%), Positives = 33/51 (64%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR P    ++ WG L K+ +P+ K+ +L PK
Sbjct: 844  HVLNRVPNRNKDKTPYEIWIGRKPLLSYLRTWGCLAKVNVPITKKRKLGPK 894



 Score = 52.4 bits (124), Expect(7) = 8e-98
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 1123 FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 1179



 Score = 37.7 bits (86), Expect(7) = 8e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 1181 VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1222



 Score = 30.8 bits (68), Expect(7) = 8e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 894  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 946



 Score = 44.7 bits (104), Expect(3) = 1e-06
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 613  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 665

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 666  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 725

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 726  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 766



 Score = 34.7 bits (78), Expect(3) = 1e-06
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 577 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 613



 Score = 22.3 bits (46), Expect(3) = 1e-06
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 458 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 517

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+ A  +VC +  LF+SY        L+ + S+A
Sbjct: 518 VDTRANVHVCADISLFSSYQVARGSTVLMGNGSHA 552


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  137 bits (345), Expect(7) = 8e-98
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.0 bits (227), Expect(7) = 8e-98
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1300



 Score = 89.4 bits (220), Expect(7) = 8e-98
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1065 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 52.4 bits (124), Expect(7) = 8e-98
 Identities = 21/51 (41%), Positives = 33/51 (64%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR P    ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPLLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 52.4 bits (124), Expect(7) = 8e-98
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 963



 Score = 37.7 bits (86), Expect(7) = 8e-98
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1006



 Score = 30.8 bits (68), Expect(7) = 8e-98
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 44.7 bits (104), Expect(3) = 1e-06
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L     R   +Y        L   K+YK EV NQL+
Sbjct: 510  RYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 550



 Score = 34.7 bits (78), Expect(3) = 1e-06
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 22.3 bits (46), Expect(3) = 1e-06
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+ A  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTRANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711758|gb|ABF99553.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1224

 Score =  135 bits (341), Expect(7) = 2e-97
 Identities = 70/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 678  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 737

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GC+ +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 738  SIIANGTWEVTERPYGCQPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 797

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 798  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 829



 Score = 88.6 bits (218), Expect(7) = 2e-97
 Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D ++ K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1069 GYSDSNWISDVDKIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1128

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1129 LRDLLMDLPVVEKPVPAILMNCDNQMVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1188

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ N S+ +GL+
Sbjct: 1189 TLDYIQTARNLADPFTKGLSRNVIDNVSKEMGLR 1222



 Score = 88.2 bits (217), Expect(7) = 2e-97
 Identities = 53/130 (40%), Positives = 75/130 (57%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 927  KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 986

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 987  SLLLHKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1046

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1047 MRYLKGTVEL 1056



 Score = 54.7 bits (130), Expect(7) = 2e-97
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 550  HVLNRVPNRNKDKTPYKIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 600



 Score = 53.5 bits (127), Expect(7) = 2e-97
 Identities = 28/57 (49%), Positives = 36/57 (63%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+ ++  +GF
Sbjct: 829  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKILTSAGF 885



 Score = 37.7 bits (86), Expect(7) = 2e-97
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 887  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 928



 Score = 32.3 bits (72), Expect(7) = 2e-97
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G    ++   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 600  KTVDCVFL-GYAHHIIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 652


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  137 bits (345), Expect(7) = 2e-97
 Identities = 71/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 89.4 bits (220), Expect(7) = 2e-97
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 1065 SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 88.2 bits (217), Expect(7) = 2e-97
 Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVKA-------------KK*LISI------GVI 2930
            LR  L D+P+  + VPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKLVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLR 1300



 Score = 54.3 bits (129), Expect(7) = 2e-97
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKHKLGPK 678



 Score = 52.4 bits (124), Expect(7) = 2e-97
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 963



 Score = 37.7 bits (86), Expect(7) = 2e-97
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 1006



 Score = 31.2 bits (69), Expect(7) = 2e-97
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 1244 KN*IETKNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K+ +  K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 672  KHKLGPKTVDCVFL-GYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 43.1 bits (100), Expect(3) = 3e-07
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ +       R   +Y        L   K+YK EV NQL+
Sbjct: 510  RYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 550



 Score = 34.7 bits (78), Expect(3) = 3e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 25.8 bits (55), Expect(3) = 3e-07
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCSQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
          Length = 1342

 Score =  134 bits (338), Expect(7) = 5e-97
 Identities = 69/152 (45%), Positives = 96/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  R   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 756  LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 815

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N  WE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 816  SIIANGIWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTY 875

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S +  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 876  SPIARLTTIRVLLSLAASHGLLVHQMDVKTAF 907



 Score = 92.4 bits (228), Expect(7) = 5e-97
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 20/156 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1147 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1206

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L D+P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1207 LRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1266

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLKLI 3038
            ++D+I++  N+A   TKGL + ++ NAS+ +GL+ I
Sbjct: 1267 TLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302



 Score = 87.0 bits (214), Expect(7) = 5e-97
 Identities = 51/130 (39%), Positives = 75/130 (57%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 1005 KSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDP 1064

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KN     + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL R+
Sbjct: 1065 SLLLRKNNRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERI 1124

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1125 MRYLKGTVEL 1134



 Score = 54.7 bits (130), Expect(7) = 5e-97
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 678



 Score = 52.4 bits (124), Expect(7) = 5e-97
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 907  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 963



 Score = 37.7 bits (86), Expect(7) = 5e-97
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 965  VNEADKCVYYRHGGGKGVILCLYVDDILIFGTNLEVINEVKS 1006



 Score = 30.4 bits (67), Expect(7) = 5e-97
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 678  KTVDCVFL-GYAHHSIAYRFLIVKSEVLDMHVGTIMESRDATFFESFFPMKDTH 730



 Score = 40.8 bits (94), Expect(3) = 2e-06
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
 Frame = +2

Query: 557  FLSKSYRTLGLYKLNGKTDDVNVVDSCDIFV*LI---------VLRGRLGTVNL*VNA*L 709
            F+ K Y   GL++ +       + D C+  V  I         V   RL  +N  + + L
Sbjct: 397  FIGKGYECGGLFRFS-------LSDFCNKSVNHICGSVDDEANVWYSRLCHINFGLMSRL 449

Query: 710  ASIGFVPKFSLDFEHKSEICEESKYAIKSFSTNVQSNSKPLELIQLCLVDMSSTQNHCGK 889
            +S+  +PKFS+    K   C +SK   K      + N  PLEL+   L +M+      GK
Sbjct: 450  SSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEKRNLAPLELLHSDLYEMNGVLTKGGK 509

Query: 890  RW-L*LP*MIVRGTILYTCLG*G*RLRSLKMYKLEVGNQLE 1009
            R+ + L         +Y        L   K+YK EV NQL+
Sbjct: 510  RYFMTLIDDATTFCYVYLLKMKDEALDYFKIYKAEVENQLD 550



 Score = 34.7 bits (78), Expect(3) = 2e-06
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 451 HVPSICENLVSCSVVDGKIFKILIESGKLVVTRQ*FF 561
           HVPSI  NLVS S +    FK++ ES K+VV++  +F
Sbjct: 361 HVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397



 Score = 25.4 bits (54), Expect(3) = 2e-06
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
 Frame = +3

Query: 111 CYVCKISSHAAVNCRQHXXXXXXXXXXXXX------ETN*NEFGGMMSEVILITNVRDQ* 272
           C+VC    H A  C Q                     T      G +  V  +    +  
Sbjct: 242 CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 273 VDSGATKNVC*NRDLFTSYHRIGDVEKLLLSNSYA 377
           VD+GA  +VC +  LF+SY        L+ + S+A
Sbjct: 302 VDTGANVHVCADISLFSSYQVARGSTVLMGNGSHA 336


>gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1235

 Score =  135 bits (341), Expect(7) = 5e-97
 Identities = 70/152 (46%), Positives = 97/152 (63%)
 Frame = +1

Query: 1474 ILKEDEVDVEPKRSKIIRLETSYETDFITCLA*SEPQTCKEALISTETPFW*EASFSEMD 1653
            ++ E++V   P+RSK  +   S+  DF   L    P++  EA  S +  +W EA  SEMD
Sbjct: 689  LVSEEDVSEAPRRSKRQKTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 748

Query: 1654 SVRWNQTWELSSLPPGCKTMGCK*VFKRKR*VDETVEKY*AKLVAKGYKLKEGVDFLDSN 1833
            S+  N TWE++  P GCK +GCK VFK+K   D T+EKY A+LVAKGY  KEG DF D+ 
Sbjct: 749  SIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKAQLVAKGYTQKEGEDFFDTY 808

Query: 1834 SIVTEITSVEILIVIAAIKNVEIHQMDVKTAF 1929
            S V  +T++ +L+ +AA   + +HQMDVKTAF
Sbjct: 809  SPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 840



 Score = 89.7 bits (221), Expect(7) = 5e-97
 Identities = 53/130 (40%), Positives = 76/130 (58%)
 Frame = +1

Query: 2218 KHALNENIDLKDLGPFDVILGMRIRR*SNIYKS*SFSLC*VVLKRYNQSDCKPACTSYDY 2397
            K  L++N D+KDLG  DVIL +++ R  N            +L R+   D KP+ T YD 
Sbjct: 938  KSFLSQNFDMKDLGVADVILNIKLIRGENEITLLQSHYVEKILNRFGYIDSKPSPTPYDP 997

Query: 2398 SCSLKKNKGSGVS*LEYSKVIGCLMNLMNCKSPDIAYIVSKLSGYNCSPEQENSDALSRV 2577
            S  L+KNK    + LEYS++IG LM L +   PDI++ VSKLS +  +P  ++  AL RV
Sbjct: 998  SLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1057

Query: 2578 LWYLKYSFDL 2607
            + YLK + +L
Sbjct: 1058 MRYLKGTVEL 1067



 Score = 88.6 bits (218), Expect(7) = 5e-97
 Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 20/154 (12%)
 Frame = +3

Query: 2631 GLYDANWIVDSEESKSTSRYGFTLTCGFVVGRFPNKHI-AQFIMESESIALDKA*EGAEC 2807
            G  D+NWI D +E K+TS Y FTL  G V  R   + I  +  ME+E  ALD A   AE 
Sbjct: 1080 GYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEW 1139

Query: 2808 LR*FLEDIPLWHRPVPAISIHCVSQAIIVK-------------AKK*LISI------GVI 2930
            LR  L ++P+  +PVPAI ++C +Q +IVK              K+ L S+      GVI
Sbjct: 1140 LRDLLMNLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVI 1199

Query: 2931 SIDWIKSKENIAQSLTKGLYKEIVKNASRGLGLK 3032
            ++D+I++  N+A   T+GL + ++ NAS+ +GL+
Sbjct: 1200 TLDYIQTARNLADPFTEGLSRNVIDNASKEMGLR 1233



 Score = 54.7 bits (130), Expect(7) = 5e-97
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 1113 YILNKVPF*ESDETPYGLWNGR*PSYECIKVWGRLTKIVIPLPKRTRLKPK 1265
            ++LN+VP    D+TPY +W GR PS   ++ WG L K+ +P+ K+ +L PK
Sbjct: 561  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPK 611



 Score = 52.4 bits (124), Expect(7) = 5e-97
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +3

Query: 1929 F*NRELGKEIYIDQPEDFVVKGCEYKVCNLKNLCMVFK*ARKQ*HGKFNHVIMDSGF 2099
            F N EL +EIY+DQP+ FVV+G E KVC L       K A KQ H KF+  +  +GF
Sbjct: 840  FLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 896



 Score = 37.7 bits (86), Expect(7) = 5e-97
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2102 INESDKYVYK*LVKDVCVIVCLYVDDML--DTNIDVINSTKN 2221
            +NE+DK VY        VI+CLYVDD+L   TN++VIN  K+
Sbjct: 898  VNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS 939



 Score = 30.4 bits (67), Expect(7) = 5e-97
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 1262 KNVDCVFV*GILSILLQIDFWLCVLIFSDIGVNIITESRDAEFFEHVYSKPVPH 1423
            K VDCVF+ G     +   F +      D+ V  I ESRDA FFE  +     H
Sbjct: 611  KTVDCVFL-GYAYHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTH 663