BLASTX nr result
ID: Papaver27_contig00009352
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00009352
(6738 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 406 e-170
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 410 e-158
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 439 e-157
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 427 e-154
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 432 e-153
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 381 e-146
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 432 e-141
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 432 e-140
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 369 e-139
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 385 e-136
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 372 e-135
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 353 e-133
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 353 e-133
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 308 e-127
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 331 e-127
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 310 e-126
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 330 e-126
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 379 e-125
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 375 e-124
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 304 e-120
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 406 bits (1043), Expect(4) = e-170
Identities = 243/729 (33%), Positives = 389/729 (53%), Gaps = 8/729 (1%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
THV++ + + + W+FV+NY + G+IWV WDP + VV+ S Q I +V
Sbjct: 39 THVKQPKDRKFINALLPGWSFVENYAFSDLGKIWVMWDPSVQ-VVVVAKSLQMITCEVLL 97
Query: 4941 FQNKNFV-AAFVYGSNDNTQRRHPWNDLRVFAASN---NKPWILLGDFNSILEVGDKVVC 4774
+ +++ + VY +N+ R+ W ++ S ++PW++LGDFN +L +
Sbjct: 98 PGSPSWIIVSVVYAANEVASRKELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNP 157
Query: 4773 ADV-IYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECF 4597
+ + ++ DFRDC+ ++ DL Y G +TW N+ T +A KIDR+LVN W F
Sbjct: 158 VSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWWNKS-HTTPVAKKIDRILVNDSWNALF 216
Query: 4596 AES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKE-PIQG 4420
S F SDH V + E A P+KF ++ K DFL++VR W + G
Sbjct: 217 PSSLGIFGSLDFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVG 276
Query: 4419 NPMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQL--QKFPLNSSIAQV 4246
+ M + KLK L K + + + + + ++ A D + Q + P+N+S ++
Sbjct: 277 SSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASF-EL 335
Query: 4245 EKVAVKTYAKLAKYDXXXXXXXXXXXEVGDSNTRFFYSSLRERRSRNNILILNSRDNVKL 4066
E A+ GD NT++F+ R S N+I L + +
Sbjct: 336 EAERKWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLV 395
Query: 4065 EDDKAIAAECIDFFDSIFTKETSSDASEAFIELLNIDKMVSVDDVVDLVKPVIRDEIVVA 3886
+ + I C +F S+ E E L + S V +L ++I A
Sbjct: 396 DSQEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAA 455
Query: 3885 LSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKCD 3706
L S+ KS GPDGF + FF SWSIVG + A++ FF SG +LK+ N T I L+ K
Sbjct: 456 LFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIV 515
Query: 3705 NPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHEI 3526
NP+ FRPISC N +YK I++++ +++ +L G+ISS QSAF+ GRS+ +N+LLA ++
Sbjct: 516 NPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDL 575
Query: 3525 VRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSVM 3346
V Y+ ++ +PR LK+DL+KA+D V W+ + A ++ L P +FI+WI CIST F+V
Sbjct: 576 VHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVS 635
Query: 3345 VNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTHL 3166
+NG GFF + +G+RQG P+SPY+FV+ ME FS LL + SG HPK ++HL
Sbjct: 636 INGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHL 695
Query: 3165 CFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECLS 2986
FA+DV++FF G + + +++F+ +SGL++N K+ L+ + ++++ S+
Sbjct: 696 MFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLE-SNANAAYG 754
Query: 2985 CSKGVLPVR 2959
G LP+R
Sbjct: 755 FPIGTLPIR 763
Score = 159 bits (401), Expect(4) = e-170
Identities = 74/189 (39%), Positives = 113/189 (59%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL++ +L + PLL+K+T R +SW ++ L+FAGR+ LI V+ G I FW S F+L
Sbjct: 765 LGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLL 824
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
PK IK + S+ RFLWSG+ K V W +C P GGLG++ L N + ++R I
Sbjct: 825 PKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLI 884
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQDGSWSWRRILECRSVAQQFMGVCIGNGE 2417
W + +++W +W H + + FW++ Q SW+W+R+L R +A QF+ +GNG
Sbjct: 885 WRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGL 944
Query: 2416 NTNFMYGFW 2390
++ Y W
Sbjct: 945 KADYWYDNW 953
Score = 82.8 bits (203), Expect(4) = e-170
Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 11/219 (5%)
Frame = -2
Query: 2306 FMDNGVWNFPICT-------HNESCTSSVLLQGVDFDSREEDLCIWKASAIG----EFSM 2160
F ++G W P+ H+ CT V + +ED+ ++ S G FS
Sbjct: 983 FSEDG-WRLPVSRSAPAKGIHDHLCTVPVP------STAQEDVDRYEWSVNGFLCQGFSA 1035
Query: 2159 KQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLHRWGILENPHCLL 1980
+T+ A+ +W +WFK +P+++ W++ L RL TR +L WG +++ C+L
Sbjct: 1036 AKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVL 1095
Query: 1979 CDQGIEDEDHLFAAFPFSNSICKGLILKMGYVRDFFDTWDAELNWCQNEFKGDGDVATIR 1800
C E DHL FS + + + ++ + F +W L+W + +R
Sbjct: 1096 CSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELLSWVRQ--SSPEAPPLLR 1153
Query: 1799 KLCLNSFIYHIWT*RNKRIFSSQSLSADGVSHLIATDVR 1683
K+ +Y++W RN + +S L+ + L+ ++R
Sbjct: 1154 KIVSQVVVYNLWRQRNNLLHNSLRLAPAVIFKLVDREIR 1192
Score = 26.2 bits (56), Expect(4) = e-170
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 5215 CWNLRGLNDPLKQVEVKNFIVSNK 5144
CWN+RG N+ + K ++ +NK
Sbjct: 7 CWNIRGFNNVSHRSGFKKWVKANK 30
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 410 bits (1055), Expect(3) = e-158
Identities = 249/751 (33%), Positives = 403/751 (53%), Gaps = 30/751 (3%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
T V+E ++ ++ + W+ + NY + GRIWV W + + I+ S Q + V
Sbjct: 37 TRVKESKVSQLVGKLFKDWSILTNYEHNRRGRIWVLWRKNVRLSP-IYKSCQLLTCSVKL 95
Query: 4941 FQNKN-FVAAFVYGSNDNTQRRHPWNDLRVFAAS---NNKPWILLGDFNSILEVGD--KV 4780
++ F +FVY SN +R+ W++L+ S +KPW LLGDFN L++ + +
Sbjct: 96 EDRQDEFFCSFVYASNYVEERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQS 155
Query: 4779 VCADVIYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLEC 4600
++ + DF+ I + D++ G +TW N++ I K+DR+L+N W +
Sbjct: 156 FVHPMVTPGMRDFQQVINYCSLTDMAAQGPLFTWCNKREHGL-IMKKLDRVLINDCWNQT 214
Query: 4599 FAES*AEFLVPGISDHSPSVVSIFE---GRFHAPPPYKFCSFWTKEPDFLDIVRQAWKEP 4429
F++S + F G SDH +S+ + P+KF + T DF +V WK+
Sbjct: 215 FSQSYSVFEAGGCSDHLRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDT 274
Query: 4428 IQGNPMMVLVGKLKRLMKILILWK-------QERFKKFSEQ------VICARDNMH---- 4300
P+++ L R K L K ++R S++ ++CA+ +++
Sbjct: 275 ---EPLILSTSTLFRFSKNLKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNP 331
Query: 4299 ---SIQQQLQKFPLNSSIAQVEKVAVKTYAKLAKYDXXXXXXXXXXXEVGDSNTRFFYSS 4129
+++++ + +A +E+ +K +KL +VGD NT+ F+ +
Sbjct: 332 SSMAMEEENAAYSRWDRVAILEEKYLKQKSKL------------HWCQVGDQNTKAFHRA 379
Query: 4128 LRERRSRNNILILNSRDNVKLEDDKAIAAECIDFFDSIFTKETSSDASEAFIELLNIDKM 3949
R + N I + S D + I AE FF + EL + +
Sbjct: 380 AAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPV 439
Query: 3948 VSVD-DVVDLVKPVIRDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNF 3772
D D L++PV +EI L + S KSPGPDG+ S FFK +W I+GD+F AVQ+F
Sbjct: 440 RCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSF 499
Query: 3771 FKSGKMLKEINCTFITLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLIS 3592
F G + K IN T + L+ K + +RPISCCNV+YK ISKIIA+++K VL I+
Sbjct: 500 FTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIA 559
Query: 3591 SNQSAFISGRSIQDNILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKL 3412
NQSAF+ R + +N+LLA E+V++YHK + + RC++KID+ KA+D V W + V L
Sbjct: 560 GNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTIL 619
Query: 3411 GFPHQFIDWIYSCISTSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLK 3232
GFP +FI WI CI+T+ FSV VNG G+F + RG+RQGC +SPY+FV+ M+V S +L
Sbjct: 620 GFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLD 679
Query: 3231 QQGSSGSFGLHPKCKTTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCK 3052
+ ++ FG HPKCKT LTHL FA+D++V G +++ + + V +EF+++SGL I+ +
Sbjct: 680 KAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLE 739
Query: 3051 KTSLFSSAVDEVTLSSIMECLSCSKGVLPVR 2959
K++++ + + + + + S G LPVR
Sbjct: 740 KSTVYLAGLSATARNEVADRFPFSSGQLPVR 770
Score = 176 bits (445), Expect(3) = e-158
Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPLI+ RL DCLPLL++V KR+ SW SR L++AGRL LI VL + FW + F L
Sbjct: 772 LGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRL 831
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
P++ I+EL + FLWSG++++ + W +C P GGLG++SL N L+ +
Sbjct: 832 PRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLV 891
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSM-STPQDGSWSWRRILECRSVAQQFMGVCIGNG 2420
W I S N++W W+ +L+++ FW + T GSW W+++L+ R VA+ V +GNG
Sbjct: 892 WKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNG 951
Query: 2419 ENTNFMYGFWHPNGGVID 2366
+ T+F Y W G +++
Sbjct: 952 KQTSFWYDNWSDLGQLLE 969
Score = 25.0 bits (53), Expect(3) = e-158
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 5212 WNLRGLNDPLKQVEVKNFIVSN 5147
WN+RGLN K +K +I N
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEEN 27
Score = 67.0 bits (162), Expect = 1e-07
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 6/166 (3%)
Frame = -2
Query: 2225 DFDSREEDLCIWKASAI---GEFSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWL 2055
D + ED +W+ + FS + T++ T V WH ++WF + P++S WL
Sbjct: 1016 DTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWL 1075
Query: 2054 ACLRRLKTRSKLHRWGILENPHCLLCDQGIEDEDHLFAAFPFSNSICKGL---ILKMGYV 1884
A RL T ++ W C+ C +E DHLF F++ I L I K Y
Sbjct: 1076 AAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYT 1135
Query: 1883 RDFFDTWDAELNWCQNEFKGDGDVATIRKLCLNSFIYHIWT*RNKR 1746
+ +A N + + +R+ + IY +W RN R
Sbjct: 1136 SHWQSIIEAITNSQHHRVEW-----FLRRYVFQATIYIVWRERNGR 1176
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 439 bits (1130), Expect(2) = e-157
Identities = 250/709 (35%), Positives = 395/709 (55%), Gaps = 8/709 (1%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
T V+E R W V NY GRIWV WDP + V+ S Q+I V
Sbjct: 38 TRVKEHRARRSLLSSFPGWKSVCNYEFAALGRIWVVWDPAVE-VTVLSKSDQTISCTVKL 96
Query: 4941 FQ-NKNFVAAFVYGSNDNTQRRHPWNDLRVFAAS---NNKPWILLGDFNSILEVGDKVVC 4774
+ FV FVY N RR W++L + AA+ ++KPWI+LGDFN L+ D
Sbjct: 97 PHISTEFVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTG 156
Query: 4773 ADVIYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFA 4594
I + +FR+C+ + I DL + G YTW N Q + IA KIDR+LVN WL
Sbjct: 157 GSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNP-IAKKIDRILVNDSWLIASP 215
Query: 4593 ES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKE-PIQGN 4417
S F SDH PS V+I P+K +F P+F++ +R W QG+
Sbjct: 216 LSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGS 275
Query: 4416 PMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSIAQVEKV 4237
M L K K L + + +E + ++V+ A N+ + Q L P +S +A +EK
Sbjct: 276 AMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAP-SSYLAGLEKE 334
Query: 4236 AVKTYAKLAKYDXXXXXXXXXXXEV--GDSNTRFFYSSLRERRSRNNILILNSRDNVKLE 4063
A +++A+LA + + GDSNT FF+ + RR+ N I L + ++E
Sbjct: 335 AHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIE 394
Query: 4062 DDKAIAAECIDFFDSIFTKETSSDASEAFIELLNIDKMVSVDDVVDLVKPVIRD-EIVVA 3886
+ + C+DFF +F + ++E ++ ++ + ++ L++ + + +I
Sbjct: 395 NTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSE 454
Query: 3885 LSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKCD 3706
++ S KSPGPDG+ S FFK +WSIVG +AAVQ FF+SG++L + N T +T++ K
Sbjct: 455 FFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKP 514
Query: 3705 NPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHEI 3526
N I FRPISCCN IYK ISK++A +++ +L IS +QSAF+ GR + +N+LLA E+
Sbjct: 515 NADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATEL 574
Query: 3525 VRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSVM 3346
V+ + + + + R LK+DL+KA+D V W I +K P +F++WI CI+++ FS+
Sbjct: 575 VQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSIN 634
Query: 3345 VNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTHL 3166
V+GS G+F +G+RQG P+SP +FV+ ME+ S LL+ + S GS G HPK +++ L
Sbjct: 635 VSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSL 694
Query: 3165 CFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDE 3019
FA+D+++F+ G + + + V+E F SGLE+N +K++++++ +++
Sbjct: 695 AFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLED 743
Score = 146 bits (368), Expect(2) = e-157
Identities = 70/198 (35%), Positives = 114/198 (57%), Gaps = 1/198 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL+ +L +D L+DK+ R W ++ L+FAGRL LI V+ + FW S F+L
Sbjct: 764 LGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFIL 823
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHN-PVGWTQICTPLKSGGLGIKSLDIRNVSANLRH 2600
PK +K + + RFLW G+D+ ++ + V W C P GGLG+++ N + NLR
Sbjct: 824 PKCCLKTIEQMCNRFLW-GNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRL 882
Query: 2599 IWDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQDGSWSWRRILECRSVAQQFMGVCIGNG 2420
IW + + +++W W H+N ++ +FW+ SW W+ IL R +A++F+ +GNG
Sbjct: 883 IWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNG 942
Query: 2419 ENTNFMYGFWHPNGGVID 2366
+ ++ Y W G +I+
Sbjct: 943 QLLSYWYDHWSNLGPLIE 960
Score = 84.3 bits (207), Expect = 7e-13
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 5/199 (2%)
Frame = -2
Query: 2249 SSVLLQGVDFDSREEDLCIW--KASAIGEFSMKQTYNALSGTVEEVNWHHIVWFKNRIPR 2076
S++L R ED W + S+ FS K T+ L W VW+K IP+
Sbjct: 1004 STLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPK 1063
Query: 2075 HSIICWLACLRRLKTRSKLHRWGILENPHCLLCDQGIEDEDHLFAAFPFSNSICKGLILK 1896
++ W+A L RL R++ W C +C + E DHLF + I + ++ +
Sbjct: 1064 YAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLAR 1123
Query: 1895 MGYVRDFFDTWDAELNWC---QNEFKGDGDVATIRKLCLNSFIYHIWT*RNKRIFSSQSL 1725
G F W + W Q F G T++KL + + I+HIW RN R+ S+ S
Sbjct: 1124 FGR-SQMFREWKDIIEWMLSNQGSFSG-----TLKKLAVQTAIFHIWKERNSRLHSAMSA 1177
Query: 1724 SADGVSHLIATDVRLKCLA 1668
S + I +R LA
Sbjct: 1178 SHTAIFKQIDRSIRDSILA 1196
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 427 bits (1099), Expect(3) = e-154
Identities = 229/730 (31%), Positives = 391/730 (53%), Gaps = 9/730 (1%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
T V+E N +++ ++ + W +++NY RIW+GW P + + H+ Q + D+
Sbjct: 37 TRVREQNASKVQGKLGKDWKWLNNYSHSARERIWIGWRPAWVNVTLTHTQEQLMVCDIQD 96
Query: 4941 FQNKNFVAAFVYGSNDNTQRRHPWNDLRVFAASNNKPWILLGDFNSILEVGDKVVCADVI 4762
+K + A VYG + R+ W+ L + P I++GDFN++ D++ V
Sbjct: 97 QSHKLKMVA-VYGLHTIADRKSLWSGL-LQCVQQQDPMIIIGDFNAVCHSNDRLYGTLVT 154
Query: 4761 YAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFAES*A 4582
A DF+ + + + + + +Y+WSN +G R+ S+ID+ VN+ WL +AE
Sbjct: 155 DAETEDFQQFLLQSNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSV 214
Query: 4581 EFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKEPIQGNPMMVL 4402
++L PGISDHSP + ++ GR P+KF + ++ +FL+ V +AW + +
Sbjct: 215 QYLPPGISDHSPLLFNLMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAI 274
Query: 4401 VGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSIAQVEKVAVKTY 4222
LK + + L K ++ E+V R + +Q Q F N + K +
Sbjct: 275 WLNLKAVKRELKQMKTQKIGLAHEKVKNLRHQLQDLQSQ-DDFDHNDIMQTDAKSIMNDL 333
Query: 4221 AKLAKYDXXXXXXXXXXXEV--GDSNTRFFYSSLRERRSRNNILILNSRDNVKLEDDKAI 4048
+ + + GD+N++ F+++++ R + N I +LN+ D ++D +
Sbjct: 334 RHWSHIEDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEV 393
Query: 4047 AAECIDFFDSIFTKETSSDASEAFIELLNID-------KMVSVDDVVDLVKPVIRDEIVV 3889
E ++F+ + S+ L+ +D K +S L++ V EI
Sbjct: 394 QEEILEFYKKLLGTRAST--------LMGVDLNTVRGGKCLSAQAKESLIREVASTEIDE 445
Query: 3888 ALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKC 3709
AL+ I + K+PG DGFN+YFFK SW + + A +Q FF + +M + INC +TLL K
Sbjct: 446 ALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKV 505
Query: 3708 DNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHE 3529
+ + + FRPI+CC VIYK ISK++ ++MK ++ +++ QS FI GR I DNILLA E
Sbjct: 506 QHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASE 565
Query: 3528 IVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSV 3349
++R Y + +PRC +K+D++KAYD V W + ++ + GFP +F+ WI C+ST +SV
Sbjct: 566 LIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSV 625
Query: 3348 MVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTH 3169
+VNG P F A++G+RQG P+SP++F + ME S L++ S F HPKC+ +TH
Sbjct: 626 LVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITH 685
Query: 3168 LCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECL 2989
L FA+D+L+F + + + ++FS SGL + +K++++ VD+ T + + +
Sbjct: 686 LMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYV 745
Query: 2988 SCSKGVLPVR 2959
G LP R
Sbjct: 746 HMQLGELPFR 755
Score = 134 bits (336), Expect(3) = e-154
Identities = 70/209 (33%), Positives = 112/209 (53%), Gaps = 3/209 (1%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LG+PL S +L Y C PL++ +T R ++W ++ L++AGRL LIK +LS M +W F L
Sbjct: 757 LGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPL 816
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
K+VI+ + + ++FLW+G + K PV W I P GG + ++ N +A L+ +
Sbjct: 817 SKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLL 876
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQDGSWSWRRILECR---SVAQQFMGVCIG 2426
W I + +W WIHS IK +D +++ +W R+I++ R S + +CIG
Sbjct: 877 WAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKARDHLSNIGDWDEICIG 936
Query: 2425 NGENTNFMYGFWHPNGGVIDWFPQECLNY 2339
+ + Y NG + W C NY
Sbjct: 937 DKFSMKKAYKKISENGERVRWRRLICNNY 965
Score = 38.9 bits (89), Expect(3) = e-154
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = -3
Query: 5212 WNLRGLNDPLKQVEVKNFIVSNKLAM 5135
WN+RG+NDP K E+KNF+ S+K+ +
Sbjct: 6 WNVRGMNDPFKIKEIKNFLYSHKIVV 31
Score = 68.6 bits (166), Expect = 4e-08
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 1/174 (0%)
Frame = -2
Query: 2192 WKASAIGE-FSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLH 2016
W IG+ FSMK+ Y +S E V W ++ P+ I W+ RL T ++
Sbjct: 930 WDEICIGDKFSMKKAYKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRIS 989
Query: 2015 RWGILENPHCLLCDQGIEDEDHLFAAFPFSNSICKGLILKMGYVRDFFDTWDAELNWCQN 1836
RWG+ + + LC E HLF + +S + + M + + + C
Sbjct: 990 RWGVQCDLNYRLCRNDGETIQHLFFSCSYSAGVWSKICYIMRFPNSGVSHQEIISSVCGQ 1049
Query: 1835 EFKGDGDVATIRKLCLNSFIYHIWT*RNKRIFSSQSLSADGVSHLIATDVRLKC 1674
K G + + F+Y IW RNKR F+ ++ + V I V +C
Sbjct: 1050 ARKKKGKLIV---MLYTEFVYAIWKQRNKRTFTGENKDENEVLRKILFAVAAQC 1100
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 432 bits (1110), Expect(3) = e-153
Identities = 232/728 (31%), Positives = 399/728 (54%), Gaps = 7/728 (0%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
T V++ N +I+ + W++++NY GRIWVGW + V+ + Q I ++V
Sbjct: 37 TRVRQQNSGKIQKKFGNRWSWINNYACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKN 96
Query: 4941 FQNKN-FVAAFVYGSNDNTQRRHPWNDLRVFAASNNKPWILLGDFNSILEVGDKVVCADV 4765
N F A VYG + R+ W +L F + ++P IL+GD+N++ D++ DV
Sbjct: 97 SYGLNMFKMAAVYGLHTIADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDV 156
Query: 4764 IYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFAES* 4585
A SD R + Q+ + +G FY+W+N+ +G RI+S+ID+ VN+ W+ + +
Sbjct: 157 SEAETSDLRSFVLKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVV 216
Query: 4584 AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKEPIQGNPMMV 4405
E+ GISDHSP + ++ P+KF +F + F+++V++AW M
Sbjct: 217 VEYREAGISDHSPLIFNLATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKN 276
Query: 4404 LVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSIAQVEKVAVKT 4225
+ +L+ + + L + ++F K QV R + ++Q P S ++++++
Sbjct: 277 IWVRLQAVKRALKSFHSKKFSKAHCQVEELRRKLAAVQA----LPEVSQVSELQEEEKDL 332
Query: 4224 YAKLAKYDXXXXXXXXXXXEV-----GDSNTRFFYSSLRERRSRNNILILNSRDNVKLED 4060
A+L K+ + GDSN++FF+++++ R++RN I++L + +L +
Sbjct: 333 IAQLRKWSTIDESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTE 392
Query: 4059 DKAIAAECIDFFDSIFTKETSSDASEAF-IELLNIDKMVSVDDVVDLVKPVIRDEIVVAL 3883
+ I E +F+ + TSS EA + ++ + +S LV+P+ EI AL
Sbjct: 393 NTEIQNEICNFYRRLLG--TSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQAL 450
Query: 3882 SSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKCDN 3703
+ I TK+PG DGFNS FFK SW ++ + + +FF++G M K INCT +TL+ K D
Sbjct: 451 ADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDE 510
Query: 3702 PSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHEIV 3523
+RPI+CC+ +YK ISKI+ +++ V+ ++ Q+ FI R I DNILLA E++
Sbjct: 511 AKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELI 570
Query: 3522 RNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSVMV 3343
R Y++ +PRC +K+D++KAYD V W + +++K+LGFP FI WI +C+ T +S+++
Sbjct: 571 RGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILL 630
Query: 3342 NGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTHLC 3163
NG P F A++G+RQG P+SP++F + ME S + F HPKC+ +LTHL
Sbjct: 631 NGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLM 690
Query: 3162 FANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECLSC 2983
FA+D+L+F + + + FS+ SGL+ + +K+ ++ V + + +
Sbjct: 691 FADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQM 750
Query: 2982 SKGVLPVR 2959
G LP R
Sbjct: 751 PIGSLPFR 758
Score = 122 bits (306), Expect(3) = e-153
Identities = 56/167 (33%), Positives = 99/167 (59%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LG+PL S +L ++ C PL+DK+T R + W + L++AGRL L+K +L M +W F L
Sbjct: 760 LGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPL 819
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
PK++IK + + ++FLW+G+ PV W + P +GGL + ++ + N +A L+ +
Sbjct: 820 PKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLL 879
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQDGSWSWRRILECRSV 2456
W I + +W W+++ IK ++ +++ + SW R+I E R +
Sbjct: 880 WAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKIFESREL 926
Score = 41.6 bits (96), Expect(3) = e-153
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = -3
Query: 5227 LKVGCWNLRGLNDPLKQVEVKNFIVSNKLAM 5135
+K+ WN+RGLNDP+K EVK+F+ S K+++
Sbjct: 1 MKITTWNVRGLNDPIKVKEVKHFLHSQKISL 31
Score = 65.1 bits (157), Expect = 4e-07
Identities = 42/165 (25%), Positives = 71/165 (43%)
Frame = -2
Query: 2168 FSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLHRWGILENPH 1989
FS+K+TY L E V W ++ P+ I WLA L RL T ++ RW +P
Sbjct: 942 FSIKKTYKLLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPL 1001
Query: 1988 CLLCDQGIEDEDHLFAAFPFSNSICKGLILKMGYVRDFFDTWDAELNWCQNEFKGDGDVA 1809
C +C IE HLF +S I ++L + ++ D A+ + + D
Sbjct: 1002 CKMCGNEIETIQHLFFNCIYSKEIWGKVLLYLN-LQPQADA-QAKKELAIKKARSTKDRN 1059
Query: 1808 TIRKLCLNSFIYHIWT*RNKRIFSSQSLSADGVSHLIATDVRLKC 1674
+ + +Y IW RN ++F ++ + I + ++C
Sbjct: 1060 KLYVMMFTESVYAIWLLRNAKVFRGIEINQNQAVKSIIFRIAVRC 1104
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 381 bits (978), Expect(2) = e-146
Identities = 240/731 (32%), Positives = 366/731 (50%), Gaps = 10/731 (1%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
T V E RI S++ + W+ + NY GRIWV W + V + S Q I V T
Sbjct: 274 TRVDENRASRIISKVFRDWSSMTNYEHHRLGRIWVVWKNTVRVTPV-YKSGQLITCSVLT 332
Query: 4941 FQN-KNFVAAFVYGSNDNTQRRHPWNDLRV---FAASNNKPWILLGDFNSILEVGD--KV 4780
+N ++F +F+Y SN +RR W DLR NK W++LGDFN IL+ D
Sbjct: 333 EENAEDFFVSFIYASNYVDERRELWEDLRNHYDLPMFRNKGWMILGDFNEILDGEDHSNF 392
Query: 4779 VCADVIYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLEC 4600
V + I + DF+D ++ + D+SY G +TW N++ + + K+DR+LVN W
Sbjct: 393 VNSPFIPQGMRDFQDVVRYCSLADMSYHGPVFTWCNKRE-EGLVNKKLDRVLVNEVWTRK 451
Query: 4599 FAES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKEPIQ- 4423
F + F GISDH + G P+KF + T P+FL IV+ W +
Sbjct: 452 FPAVYSIFEAGGISDHLRCRIKFASGNTQPKGPFKFNNVLTTLPEFLQIVKDFWDGTLAL 511
Query: 4422 ---GNPMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSIA 4252
+ M KLK L IL + S +V A +++ + LQ+
Sbjct: 512 FHPTSAMFRFSKKLKGLKPILKSLGRSTLHNLSVRVAEAYTSLYLEEGYLQQ-------- 563
Query: 4251 QVEKVAVKTYAKLAKYDXXXXXXXXXXXEVGDSNTRFFYSSLRERRSRNNILILNSRDNV 4072
+KL D VGD N ++F++S++ R + +NS +
Sbjct: 564 ---------KSKLHWLD------------VGDKNNKYFHNSVKAR------VAMNSIREI 596
Query: 4071 KLEDDKAIAAECIDFFDSIFTKETSSDASEAFIELLNIDKMVSVDDVVDLVKPVIRDEIV 3892
+ D + + DD+ +
Sbjct: 597 QCTDGRVCTSH---------------------------------DDIKE----------- 612
Query: 3891 VALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAK 3712
+ KSPGPDG+ FFK +W ++G D V A+Q+FF G + K IN T + L++K
Sbjct: 613 ------EAHKSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISK 666
Query: 3711 CDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAH 3532
S + +RPISCCNV+YK +SK++A+++K +L I+ NQSAFI R + +N+LLA
Sbjct: 667 KHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLAS 726
Query: 3531 EIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFS 3352
E+V++YHK S + R +LKID+ KA+D V W + V+K + P FI WI CI T+ FS
Sbjct: 727 ELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFS 786
Query: 3351 VMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLT 3172
V VNG GFF ++RG+RQGC +SPY++V+ M V S +L + HP+C+ LT
Sbjct: 787 VQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLT 846
Query: 3171 HLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMEC 2992
HLCFA+D++VF GT K+ Q + E+F+ S L+I+ +K+++F + + +SI++
Sbjct: 847 HLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQ 906
Query: 2991 LSCSKGVLPVR 2959
G LPV+
Sbjct: 907 FPFELGTLPVK 917
Score = 169 bits (429), Expect(2) = e-146
Identities = 81/194 (41%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL++ R+ +D LPL++K+ R+ SW +R L+FAGRL LIK VLS + FW S F L
Sbjct: 919 LGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRL 978
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
PK ++E+ +F FLWSG DL+ K + W+++C + GGLG+K L N + L+ I
Sbjct: 979 PKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLI 1038
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQD-GSWSWRRILECRSVAQQFMGVCIGNG 2420
W I S +++W W++ +LI+ + FWS+ GSW WR+IL+ R A+ F + + +G
Sbjct: 1039 WRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSG 1098
Query: 2419 ENTNFMYGFWHPNG 2378
T+F + W P G
Sbjct: 1099 TFTSFWHDHWCPLG 1112
Score = 71.6 bits (174), Expect = 5e-09
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = -3
Query: 6082 KTIPIWVNLKDVPIHLWNPKGLGKLASFIGVPLMLHKQTATTSRMTYARVCVEVNVDSDL 5903
KT+P+WV +K+VP +++ GL L S +G P+ LH +T ++ A+V VEVN+ ++
Sbjct: 3 KTMPLWVTVKNVPHSMFSWNGLSFLTSPVGNPIRLHPETELCTKFDEAKVFVEVNLSQEV 62
Query: 5902 PSQIDAMVGNVR-IKVPVEYNWKPQKCSHCAVFGHTRDKC 5786
P + + + V Y W P KCS C +GH D C
Sbjct: 63 PKCFRFSIEDEEDVNVEFVYPWLPPKCSCCNKWGHLVDVC 102
Score = 65.5 bits (158), Expect = 3e-07
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Frame = -2
Query: 2216 SREEDLCIWKASAI---GEFSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACL 2046
S + D +WK FS +T+ + +W+ VWF P++S + WLA
Sbjct: 1166 STDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFH 1225
Query: 2045 RRLKTRSKLHRWGILENPHCLLCDQGIEDEDHLFAAFPFSN----SICKGLI 1902
RL T K+ +W C+ C + +E DHLF + P+S+ S+ KGL+
Sbjct: 1226 NRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTKGLL 1277
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 432 bits (1110), Expect(3) = e-141
Identities = 263/722 (36%), Positives = 401/722 (55%), Gaps = 15/722 (2%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
THV++ + + S + W+FV+NY G+IWV WDP + VVI S Q I ++
Sbjct: 39 THVKQPKEKKFISNLLPGWSFVENYEFSVLGKIWVLWDPSVK-VVVIGRSLQMITCELLL 97
Query: 4941 FQNKN-FVAAFVYGSNDNTQRRHPWNDLRVFAASN---NKPWILLGDFNSILEVGDKVVC 4774
+ + FV + VY SN+ R+ WN+L A S + WI+LGDFN IL + +
Sbjct: 98 PDSPSWFVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNP-ESAIN 156
Query: 4773 ADVIYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFA 4594
A+ I + FR C+ D+ ++DL Y G YTW N+ +A KIDR+LVN W F
Sbjct: 157 AN-IGRKIRAFRSCLLDSDLYDLVYKGSSYTWWNK-CSSRPLAKKIDRILVNDHWNTLFP 214
Query: 4593 ES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKE-PIQGN 4417
+ A F P SDHS V + A P++F +++ PDFL ++R+ W + G+
Sbjct: 215 SAYANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGS 274
Query: 4416 PMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPL-NSSI--AQV 4246
M + KLK L + + +E + ++V H+I Q+ L N S+ A +
Sbjct: 275 AMYRVSKKLKHLKLPICCFSRENYSDIEKRV----SEAHAIVLHRQRITLTNPSVVHATL 330
Query: 4245 EKVAVKTYAKLAKYDXXXXXXXXXXXEV--GDSNTRFFYSSLRERRSRNNILILNSRDNV 4072
E A + + LAK + + GD+NT +F+ R+S N I L
Sbjct: 331 ELEATRKWQILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGE 390
Query: 4071 KLEDDKAIAA----ECIDFFDSIFTK-ETSSDASEAFIELLNIDKMVSVDDVVDLVKPVI 3907
++E + I +FF+S+ E + +++ + LL + SVD + DL +
Sbjct: 391 RIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQSDMNLL-LSFRCSVDQINDLERSFS 449
Query: 3906 RDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFI 3727
+I A S+ K+ GPDG++S FFK W +VG + AVQ FF+SG++LK+ N T +
Sbjct: 450 DLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTL 509
Query: 3726 TLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDN 3547
L+ K N S + FRPISC N +YK I+K++ S++K +L +IS +QSAF+ GR + +N
Sbjct: 510 VLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSEN 569
Query: 3546 ILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCIS 3367
+LLA EIV Y+ + + R LK+DL+KA+D V WD I + + L P +F+ WI CIS
Sbjct: 570 VLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCIS 629
Query: 3366 TSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCK 3187
T FSVMVNGS GFF + +G+RQG P+SPY+FV+ MEVFS+LLK + +G HPK
Sbjct: 630 TPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTA 689
Query: 3186 TTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLS 3007
++HL FA+DV+VFF G + ++ +++F+ +SGL +N KT+L+ + DEV
Sbjct: 690 DLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEAL 749
Query: 3006 SI 3001
+I
Sbjct: 750 AI 751
Score = 98.2 bits (243), Expect(3) = e-141
Identities = 48/133 (36%), Positives = 78/133 (58%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL+S +L ++ ++ KR +SW + L+FAGR+ LI V++G++ FW S F+L
Sbjct: 766 LGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVL 820
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
+K++ S+ RFLWSGS K + W+ +C P GG+G++ N + LR I
Sbjct: 821 LLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFI 880
Query: 2596 WDINSG*NTIWTN 2558
W + + + +W N
Sbjct: 881 WPLFADNDVLWAN 893
Score = 24.3 bits (51), Expect(3) = e-141
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 5224 KVGCWNLRGLNDPLKQVEVKNFIVSNK 5144
K+ CWN+RG N + K + + NK
Sbjct: 4 KLFCWNVRGFNISSHRRGFKKWFLLNK 30
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 432 bits (1110), Expect(3) = e-140
Identities = 263/722 (36%), Positives = 401/722 (55%), Gaps = 15/722 (2%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
THV++ + + S + W+FV+NY G+IWV WDP + VVI S Q I ++
Sbjct: 39 THVKQPKEKKFISNLLPGWSFVENYEFSVLGKIWVLWDPSVK-VVVIGRSLQMITCELLL 97
Query: 4941 FQNKN-FVAAFVYGSNDNTQRRHPWNDLRVFAASN---NKPWILLGDFNSILEVGDKVVC 4774
+ + FV + VY SN+ R+ WN+L A S + WI+LGDFN IL + +
Sbjct: 98 PDSPSWFVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNP-ESAIN 156
Query: 4773 ADVIYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFA 4594
A+ I + FR C+ D+ ++DL Y G YTW N+ +A KIDR+LVN W F
Sbjct: 157 AN-IGRKIRAFRSCLLDSDLYDLVYKGSSYTWWNK-CSSRPLAKKIDRILVNDHWNTLFP 214
Query: 4593 ES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKE-PIQGN 4417
+ A F P SDHS V + A P++F +++ PDFL ++R+ W + G+
Sbjct: 215 SAYANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGS 274
Query: 4416 PMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPL-NSSI--AQV 4246
M + KLK L + + +E + ++V H+I Q+ L N S+ A +
Sbjct: 275 AMYRVSKKLKHLKLPICCFSRENYSDIEKRV----SEAHAIVLHRQRITLTNPSVVHATL 330
Query: 4245 EKVAVKTYAKLAKYDXXXXXXXXXXXEV--GDSNTRFFYSSLRERRSRNNILILNSRDNV 4072
E A + + LAK + + GD+NT +F+ R+S N I L
Sbjct: 331 ELEATRKWQILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGE 390
Query: 4071 KLEDDKAIAA----ECIDFFDSIFTK-ETSSDASEAFIELLNIDKMVSVDDVVDLVKPVI 3907
++E + I +FF+S+ E + +++ + LL + SVD + DL +
Sbjct: 391 RIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQSDMNLL-LSFRCSVDQINDLERSFS 449
Query: 3906 RDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFI 3727
+I A S+ K+ GPDG++S FFK W +VG + AVQ FF+SG++LK+ N T +
Sbjct: 450 DLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTL 509
Query: 3726 TLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDN 3547
L+ K N S + FRPISC N +YK I+K++ S++K +L +IS +QSAF+ GR + +N
Sbjct: 510 VLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSEN 569
Query: 3546 ILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCIS 3367
+LLA EIV Y+ + + R LK+DL+KA+D V WD I + + L P +F+ WI CIS
Sbjct: 570 VLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCIS 629
Query: 3366 TSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCK 3187
T FSVMVNGS GFF + +G+RQG P+SPY+FV+ MEVFS+LLK + +G HPK
Sbjct: 630 TPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTA 689
Query: 3186 TTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLS 3007
++HL FA+DV+VFF G + ++ +++F+ +SGL +N KT+L+ + DEV
Sbjct: 690 DLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEAL 749
Query: 3006 SI 3001
+I
Sbjct: 750 AI 751
Score = 95.9 bits (237), Expect(3) = e-140
Identities = 47/133 (35%), Positives = 77/133 (57%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL+S +L ++ ++ KR +SW + L+FAGR+ LI V++G++ FW S F+L
Sbjct: 766 LGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVL 820
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
+K++ S+ RFLWSGS K + W+ +C P GG+ ++ N + LR I
Sbjct: 821 LLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFI 880
Query: 2596 WDINSG*NTIWTN 2558
W + + + +W N
Sbjct: 881 WPLFADNDVLWAN 893
Score = 24.3 bits (51), Expect(3) = e-140
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 5224 KVGCWNLRGLNDPLKQVEVKNFIVSNK 5144
K+ CWN+RG N + K + + NK
Sbjct: 4 KLFCWNVRGFNISSHRRGFKKWFLLNK 30
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 369 bits (948), Expect(2) = e-139
Identities = 223/666 (33%), Positives = 352/666 (52%), Gaps = 11/666 (1%)
Frame = -1
Query: 4923 VAAFVYGSNDNTQRRHPWNDLRVFAASN---NKPWILLGDFNSILEVGDKVVCADV-IYA 4756
V +FVY S D R+ WN++ F+ +KPW +LGDFN IL + +
Sbjct: 2 VLSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDR 61
Query: 4755 HLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFAES*AEF 4576
FR+ I + DLS+ G +TW N++ +A K+DR+LVN +W F S F
Sbjct: 62 PTRIFRETILLASLTDLSFRGNTFTWWNKR-SRAPVAKKLDRILVNDKWTTTFPSSLGLF 120
Query: 4575 LVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAW-KEPIQGNPMMVLV 4399
P SDHS +S+ + P++F +F K+ +FL ++ W + G+ M +
Sbjct: 121 GEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVS 180
Query: 4398 GKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSIAQVEKVAVKTYA 4219
KLK L K++ + ++ + ++ A D + Q L P S+ A +E + +
Sbjct: 181 VKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAA-IEAETQRKWR 239
Query: 4218 KLAKYDXXXXXXXXXXXEV--GDSNTRFFYSSLRERRSRNNILILNSRDNVKLEDDKAIA 4045
LA+ + + GD N+ +F+ R+S N+I L+ ++E + +
Sbjct: 240 ILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLE 299
Query: 4044 AECIDFFDSIFTKETSSDASEAFIELLNIDKMVSVD----DVVDLVKPVIRDEIVVALSS 3877
C+++F S S+ E +I ++S V L P ++I A S
Sbjct: 300 NHCVEYFQS----NLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFS 355
Query: 3876 IHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKCDNPS 3697
+ K+ GPDGF+ FF W I+G + A+ FF SGK+LK+ N T + L+ K N S
Sbjct: 356 LPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNAS 415
Query: 3696 TIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHEIVRN 3517
++ FRPISC N +YK ISK++ ++K L IS +QSAF+ GR +N+LLA E+V
Sbjct: 416 SMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHG 475
Query: 3516 YHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSVMVNG 3337
Y+K + P LK+DL+KA+D V WD I + ++ L P +F WI C+ST+ FSV++NG
Sbjct: 476 YNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNG 535
Query: 3336 SPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTHLCFA 3157
G F + +G+RQG P+SPY+FV+ MEVFS LL+ + +SG HPK +++HL FA
Sbjct: 536 HSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFA 595
Query: 3156 NDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECLSCSK 2977
+DV++FF G + + +E+F+ +SGL +N KT L+ + + + + S M
Sbjct: 596 DDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQ-SESDSMASYGFKL 654
Query: 2976 GVLPVR 2959
G LPVR
Sbjct: 655 GSLPVR 660
Score = 156 bits (395), Expect(2) = e-139
Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 2/204 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL+S +L + PL++K+T R SW R L+FAGR+ L+ V+SG++ FW S F+L
Sbjct: 662 LGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFIL 721
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKH-NPVGWTQICTPLKSGGLGIKSLDIRNVSANLRH 2600
P IK++ S+ RFLWS S +DKK V W+Q+C P GG+G++ + N + LR
Sbjct: 722 PLGCIKKIESLCSRFLWS-SRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRM 780
Query: 2599 IWDINSG*NTIWTNW-IHSNLIKSKDFWSMSTPQDGSWSWRRILECRSVAQQFMGVCIGN 2423
IW + S ++W W +L KS FW+ SW+W+ +L R VA++F+ +GN
Sbjct: 781 IWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGN 840
Query: 2422 GENTNFMYGFWHPNGGVIDWFPQE 2351
G + +F + W P G +I + E
Sbjct: 841 GRDASFWFDNWTPFGPLIKFLGNE 864
Score = 68.9 bits (167), Expect = 3e-08
Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Frame = -2
Query: 2168 FSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLHRWGILENPH 1989
FS T++AL + V W VWFK P+H+ W A L RL T+ +L WG+ +
Sbjct: 930 FSAAATWSALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTT 989
Query: 1988 CLLCDQGIEDEDHLFAAFPFSNSIC----KGLILKMGYVRDFFDTWDAELN 1848
C LC E DHLF + F+N +C + L L + DF DA N
Sbjct: 990 CGLCSLHPETRDHLFLSCDFANFLCIPRSEALSLVLPQCEDFTCFTDAAWN 1040
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 385 bits (989), Expect(3) = e-136
Identities = 243/736 (33%), Positives = 370/736 (50%), Gaps = 15/736 (2%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
THV + N + + + W NY GRIW+ WDP I +V + Q +F +
Sbjct: 37 THVAQENANSVLASTLPGWRMDSNYCCSELGRIWIVWDPSIS-VLVFKRTDQIMFCSIKI 95
Query: 4941 FQN-KNFVAAFVYGSNDNTQRRHPWNDLRVFAASNN---KPWILLGDFNSILEVGDKVVC 4774
++F AFVYG N RR W D+ V + ++ PW+LLGDFN I +
Sbjct: 96 PSLLQSFAVAFVYGRNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSI 155
Query: 4773 ADVIY--AHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLEC 4600
+ + D + C++D+Q+ DL G F+TWSN Q D I K+DR L N +W
Sbjct: 156 NQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFTWSNHQQ-DNPILRKLDRALANGEWFAV 214
Query: 4599 FAES*AEFLVPGISDHSPSVVSIFEGRFHAPPP----YKFCSFWTKEPDFLDIVRQAWK- 4435
F + A F PG SDH+P ++ I + PPP +K+ SF + P +L + AW+
Sbjct: 215 FPSALAVFDPPGDSDHAPCIILID----NQPPPSKKSFKYFSFLSSHPSYLAALSTAWEA 270
Query: 4434 EPIQGNPMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSI 4255
+ G+ M L LK + RF ++ + + IQ +L P + ++
Sbjct: 271 NTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSP-SDTL 329
Query: 4254 AQVEKVAVKTYAKLAKY--DXXXXXXXXXXXEVGDSNTRFFYSSLRERRSRNNILILNSR 4081
+ E VA K + A GD+NTRFF+ ++ ++ N I L
Sbjct: 330 FRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGD 389
Query: 4080 DNVKLEDDKAIAAECIDFFDSIFTKETSSDASEAFIELLNIDKMVSVDDVV--DLVKPVI 3907
D ++E+ I I ++ + S + + +E + D + L
Sbjct: 390 DGFRVENVDQIKGMLIAYYSHLLGIP-SENVTPFSVEKIKGLLPFRCDSFLASQLTTIPS 448
Query: 3906 RDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFI 3727
+EI L S+ K+PGPDGF FF +W+IV VAA++ FF SG + + N T I
Sbjct: 449 EEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAI 508
Query: 3726 TLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDN 3547
TL+ K + FRP++CC IYK I++II+ ++K + + +NQ FI GR + +N
Sbjct: 509 TLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCEN 568
Query: 3546 ILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCIS 3367
+LLA E+V N+ T R L++D+ KAYD V+W+ + ++K L P FI WI+ CIS
Sbjct: 569 VLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCIS 628
Query: 3366 TSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCK 3187
++ +S+ NG GFF K+GIRQG P+S ++FV+VM+V S L +G F LHP C
Sbjct: 629 SASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCL 688
Query: 3186 TTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLS 3007
+THL FA+DVLVF G + + ++++F Q SGL IN +KT L +
Sbjct: 689 APIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNR 748
Query: 3006 SIMECLSCSKGVLPVR 2959
S+ + L + G LPVR
Sbjct: 749 SLADNLGITHGSLPVR 764
Score = 119 bits (297), Expect(3) = e-136
Identities = 53/145 (36%), Positives = 88/145 (60%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LG+PL+S ++ D PL+D++ R SW +RHL+FAGRL L+K V+ I FW S F+
Sbjct: 766 LGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIF 825
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
P + +++L + FLWSG+ + + W +C+P ++GGLG+K L N L+ I
Sbjct: 826 PNQCLQKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNRILALKLI 885
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDF 2522
W + + ++W +W+ +LI ++F
Sbjct: 886 WLLFTSAGSLWVSWVRLHLIGRRNF 910
Score = 35.4 bits (80), Expect(3) = e-136
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -3
Query: 5227 LKVGCWNLRGLNDPLKQVEVKNFIVSNKL 5141
+KV CWN+RGLN +Q V+++I SN L
Sbjct: 1 MKVFCWNIRGLNSRNRQRVVRSWIASNNL 29
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 372 bits (955), Expect(2) = e-135
Identities = 226/734 (30%), Positives = 362/734 (49%), Gaps = 13/734 (1%)
Frame = -1
Query: 5121 THVQEFNKDRIRSRISQSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTT 4942
T V E I +++ + W V NY + GRIWV W + V+ SS + L
Sbjct: 339 TRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSSSVQLQVIFKSSQMIVCLVRVE 398
Query: 4941 FQNKNFVAAFVYGSNDNTQRRHPWNDLRVF---AASNNKPWILLGDFNSILEVGD--KVV 4777
+ F+ +F+Y SN +R+ W DL A NKPW+L GDFN L++ +
Sbjct: 399 HYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYA 458
Query: 4776 CADVIYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECF 4597
+ ++ + DF+ ++ + D+ G +TW N++ + I K+DR+L+N ++ +
Sbjct: 459 VSPMVTPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKR-NEGLICKKLDRVLLNPEYNSAY 517
Query: 4596 AES*AEFLVPGISDHSPSVVSIFEGRFHAPP-------PYKFCSFWTKEPDFLDIVRQAW 4438
S G SDH GRFH P+KF + P+F+ V W
Sbjct: 518 PHSYCIMDSGGCSDH-------LRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDFW 570
Query: 4437 KEPIQGNPMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSS 4258
K + P + + + +K L + + K ++
Sbjct: 571 KNTTELFPSTSTLFRFSKKLKEL--------------------------KPILKDLSRNN 604
Query: 4257 IAQVEKVAVKTYAKLAKYDXXXXXXXXXXXEVGDSNTRFFYSSLRERRSRNNILILNSRD 4078
++ + + A Y +L + V +S F +ER N I +
Sbjct: 605 LSDLTRRATYAYEELCRCQTKSLTTLNPHDIVDESLA--FERWEKERHLLNAIHEVMDPQ 662
Query: 4077 NVKLEDDKAIAAECIDFFDSIFTKETSSDASEAFIELLNI-DKMVSVDDVVDLVKPVIRD 3901
+ + I E + FF + + + S + EL I S+ + LV +
Sbjct: 663 GTRPPNQDDIKIEAVRFFSDLLSSQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEA 722
Query: 3900 EIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITL 3721
E++ SI KSPGPDG+ FF+ +WS++G + A+++FF G + K +N T + L
Sbjct: 723 EVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILAL 782
Query: 3720 LAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNIL 3541
+ K + +RPISCCNV+YK ISK++A+++K +L I+ NQSAFIS R + +N+L
Sbjct: 783 IPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLL 842
Query: 3540 LAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTS 3361
LA E+V++YHK +PRC++KIDL KA+D V W + + L P +FI WI CIST+
Sbjct: 843 LASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTA 902
Query: 3360 RFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTT 3181
FSV VN G+RQGC +SPY+FV+ M V SA+L + FG HP+C+
Sbjct: 903 SFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNM 951
Query: 3180 QLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSI 3001
LTHLCFA+D++VF G+ + + + + ++F+ FSGL I+ +K++LF +++ T +SI
Sbjct: 952 GLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASI 1011
Query: 3000 MECLSCSKGVLPVR 2959
+ G LPVR
Sbjct: 1012 LARFPFDSGSLPVR 1025
Score = 140 bits (352), Expect(2) = e-135
Identities = 63/142 (44%), Positives = 91/142 (64%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL++ R+ DCLPLL+K+ R+ SWK+R L++AGRL L+ V+S + FW S F L
Sbjct: 1027 LGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRL 1086
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
P+ I+E+ I FLWSG+DL+ V W +C P GGLG++SL N + I
Sbjct: 1087 PRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLI 1146
Query: 2596 WDINSG*NTIWTNWIHSNLIKS 2531
W + S +++W NWI +NLI++
Sbjct: 1147 WRLVSAKHSLWVNWIQNNLIRT 1168
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 353 bits (905), Expect(2) = e-133
Identities = 203/605 (33%), Positives = 329/605 (54%), Gaps = 4/605 (0%)
Frame = -1
Query: 4824 LLGDFNSILEVGDKVVCADV-IYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRI 4648
+LGDFN +L + + I + DF C+ + ++ DL + G +TW N+ I
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKS-SIRPI 59
Query: 4647 ASKIDRMLVNMQWLECFAES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEP 4468
A K+DR+L N W + S F SDH V + A P+KF +F K
Sbjct: 60 AKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNE 119
Query: 4467 DFLDIVRQAW-KEPIQGNPMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQ 4291
DFL++V W + G+ M + KLK + K + + + + + A + + + Q
Sbjct: 120 DFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQ 179
Query: 4290 QQLQKFPLNSSIAQVEKVAVKTYAKL--AKYDXXXXXXXXXXXEVGDSNTRFFYSSLRER 4117
P S+ A +E A + + L A+ GDSNT +F+ + R
Sbjct: 180 NLTLANPSVSNAA-LELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSR 238
Query: 4116 RSRNNILILNSRDNVKLEDDKAIAAECIDFFDSIFTKETSSDASEAFIELLNIDKMVSVD 3937
+S N I L + + ++ + I C+ +++ + S + E L + S D
Sbjct: 239 KSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQD 298
Query: 3936 DVVDLVKPVIRDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGK 3757
+L K DEI A S+ K+ GPDG++ FF+ +WSI+G + +AA+ FF SG+
Sbjct: 299 QCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQ 358
Query: 3756 MLKEINCTFITLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSA 3577
+LK+ N T + L+ K N TI FRPISC N +YK ISK++ S+++ +L +I +QSA
Sbjct: 359 LLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSA 418
Query: 3576 FISGRSIQDNILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQ 3397
F+ GRS+ +N+LLA E+V Y++ + +PR LK+DL+KA+D V W+ + A ++ L P +
Sbjct: 419 FLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPER 478
Query: 3396 FIDWIYSCISTSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSS 3217
+I+WI+ CI+T F++ VNG+ GFF + +G+RQG P+SPY+FV+ MEVFS LL + S
Sbjct: 479 YINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDS 538
Query: 3216 GSFGLHPKCKTTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLF 3037
G HPK ++HL FA+DV++FF G + + +++F+ +SGL++N K+ LF
Sbjct: 539 GYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF 598
Query: 3036 SSAVD 3022
+ +D
Sbjct: 599 QAGLD 603
Score = 153 bits (387), Expect(2) = e-133
Identities = 73/198 (36%), Positives = 113/198 (57%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL+ +L D PLL+K++ R++SW S+ L+FAGR LI V+ G+I FW S F+L
Sbjct: 625 LGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLL 684
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
PK IK++ S+ +FLW+GS +K + V W C P GGLG +S N + LR I
Sbjct: 685 PKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLI 744
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQDGSWSWRRILECRSVAQQFMGVCIGNGE 2417
W + ++W W + + FW ++ Q W+W+ +L R +A++F+ +GNG
Sbjct: 745 WVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGG 804
Query: 2416 NTNFMYGFWHPNGGVIDW 2363
+F + W G +I +
Sbjct: 805 TVSFWFDCWTSLGPLIKY 822
Score = 87.4 bits (215), Expect = 8e-14
Identities = 49/169 (28%), Positives = 79/169 (46%)
Frame = -2
Query: 2168 FSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLHRWGILENPH 1989
FS +T+ L W VWFK +P+H+ W A L RL TR +L WG++ +
Sbjct: 892 FSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAE 951
Query: 1988 CLLCDQGIEDEDHLFAAFPFSNSICKGLILKMGYVRDFFDTWDAELNWCQNEFKGDGDVA 1809
C LC E DHL FS+ + + + L++ + TW L+W + +
Sbjct: 952 CCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAAAPSL- 1010
Query: 1808 TIRKLCLNSFIYHIWT*RNKRIFSSQSLSADGVSHLIATDVRLKCLASR 1662
+RK+ +Y++W RN + SS +S V L+ ++R L+ R
Sbjct: 1011 -LRKVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILSRR 1058
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 353 bits (905), Expect(2) = e-133
Identities = 203/605 (33%), Positives = 329/605 (54%), Gaps = 4/605 (0%)
Frame = -1
Query: 4824 LLGDFNSILEVGDKVVCADV-IYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTRI 4648
+LGDFN +L + + I + DF C+ + ++ DL + G +TW N+ I
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKS-SIRPI 59
Query: 4647 ASKIDRMLVNMQWLECFAES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEP 4468
A K+DR+L N W + S F SDH V + A P+KF +F K
Sbjct: 60 AKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNE 119
Query: 4467 DFLDIVRQAW-KEPIQGNPMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQ 4291
DFL++V W + G+ M + KLK + K + + + + + A + + + Q
Sbjct: 120 DFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQ 179
Query: 4290 QQLQKFPLNSSIAQVEKVAVKTYAKL--AKYDXXXXXXXXXXXEVGDSNTRFFYSSLRER 4117
P S+ A +E A + + L A+ GDSNT +F+ + R
Sbjct: 180 NLTLANPSVSNAA-LELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSR 238
Query: 4116 RSRNNILILNSRDNVKLEDDKAIAAECIDFFDSIFTKETSSDASEAFIELLNIDKMVSVD 3937
+S N I L + + ++ + I C+ +++ + S + E L + S D
Sbjct: 239 KSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQD 298
Query: 3936 DVVDLVKPVIRDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGK 3757
+L K DEI A S+ K+ GPDG++ FF+ +WSI+G + +AA+ FF SG+
Sbjct: 299 QCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQ 358
Query: 3756 MLKEINCTFITLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSA 3577
+LK+ N T + L+ K N TI FRPISC N +YK ISK++ S+++ +L +I +QSA
Sbjct: 359 LLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSA 418
Query: 3576 FISGRSIQDNILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQ 3397
F+ GRS+ +N+LLA E+V Y++ + +PR LK+DL+KA+D V W+ + A ++ L P +
Sbjct: 419 FLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPER 478
Query: 3396 FIDWIYSCISTSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSS 3217
+I+WI+ CI+T F++ VNG+ GFF + +G+RQG P+SPY+FV+ MEVFS LL + S
Sbjct: 479 YINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDS 538
Query: 3216 GSFGLHPKCKTTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLF 3037
G HPK ++HL FA+DV++FF G + + +++F+ +SGL++N K+ LF
Sbjct: 539 GYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF 598
Query: 3036 SSAVD 3022
+ +D
Sbjct: 599 QAGLD 603
Score = 153 bits (387), Expect(2) = e-133
Identities = 73/198 (36%), Positives = 113/198 (57%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL+ +L D PLL+K++ R++SW S+ L+FAGR LI V+ G+I FW S F+L
Sbjct: 625 LGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLL 684
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
PK IK++ S+ +FLW+GS +K + V W C P GGLG +S N + LR I
Sbjct: 685 PKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLI 744
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQDGSWSWRRILECRSVAQQFMGVCIGNGE 2417
W + ++W W + + FW ++ Q W+W+ +L R +A++F+ +GNG
Sbjct: 745 WVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGG 804
Query: 2416 NTNFMYGFWHPNGGVIDW 2363
+F + W G +I +
Sbjct: 805 TVSFWFDCWTSLGPLIKY 822
Score = 87.8 bits (216), Expect = 6e-14
Identities = 49/169 (28%), Positives = 79/169 (46%)
Frame = -2
Query: 2168 FSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLHRWGILENPH 1989
FS +T+ L W VWFK +P+H+ W A L RL TR +L WG++ +
Sbjct: 892 FSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAE 951
Query: 1988 CLLCDQGIEDEDHLFAAFPFSNSICKGLILKMGYVRDFFDTWDAELNWCQNEFKGDGDVA 1809
C LC E DHL FS+ + + + L++ + TW L+W + +
Sbjct: 952 CCLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAAAPSL- 1010
Query: 1808 TIRKLCLNSFIYHIWT*RNKRIFSSQSLSADGVSHLIATDVRLKCLASR 1662
+RK+ +Y++W RN + SS +S V L+ ++R L+ R
Sbjct: 1011 -LRKVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILSRR 1058
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 308 bits (790), Expect(2) = e-127
Identities = 157/404 (38%), Positives = 247/404 (61%), Gaps = 2/404 (0%)
Frame = -1
Query: 4164 VGDSNTRFFYSSLRERRSRNNILILNSRDNVKLEDDKAIAAECIDFFDSIFTKETSSDAS 3985
VGD N + F+ ++ R + N+I + +RD + + + I E +++F F + +D
Sbjct: 89 VGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQD-FLQTIPADYE 147
Query: 3984 EAFIELLN--IDKMVSVDDVVDLVKPVIRDEIVVALSSIHSTKSPGPDGFNSYFFKFSWS 3811
+E L + S DD L + V +EI + S+ KSPGPDG+ S F+K SW
Sbjct: 148 GMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWE 207
Query: 3810 IVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKCDNPSTIGYFRPISCCNVIYKCISKII 3631
I+GD+ + A+Q+FF G + K +N T + L+ K I +RPISCCNV+YK ISKI+
Sbjct: 208 IIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKIL 267
Query: 3630 ASKMKFVLKGLISSNQSAFISGRSIQDNILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDI 3451
A+++K +L I NQSAF+ R + +N+LLA E+V++YHK S + RC++KID+ KA+D
Sbjct: 268 ANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDS 327
Query: 3450 VSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSVMVNGSPFGFFGAKRGIRQGCPISPYI 3271
+ W + V+ + FP +FI WI C+ST+ FS+ VNG G+F + RG+RQGC +SPY+
Sbjct: 328 LQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYL 387
Query: 3270 FVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTHLCFANDVLVFFKGTVKASQVLAGVIE 3091
FV+ M+V S +L + + FG HP+CKT LTHLCFA+D+++ G +++ + V+
Sbjct: 388 FVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLN 447
Query: 3090 EFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECLSCSKGVLPVR 2959
+F+ GL+I +KT+L+ + V + + + S G LPVR
Sbjct: 448 QFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVR 491
Score = 178 bits (451), Expect(2) = e-127
Identities = 85/198 (42%), Positives = 123/198 (62%), Gaps = 1/198 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL++ RL +D PL+D++ +R+ W SR+L+FAGRL LI VL + FW + F L
Sbjct: 493 LGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRL 552
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
P+ I E+N I LWSG +L+ K V W +IC P K GGLG++SL N ++L+ I
Sbjct: 553 PRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLI 612
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQD-GSWSWRRILECRSVAQQFMGVCIGNG 2420
W + S +++W W NL+K + FWS+ T GSW WRR+L+ R VA+ F + + NG
Sbjct: 613 WRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNG 672
Query: 2419 ENTNFMYGFWHPNGGVID 2366
NT+F + W G +I+
Sbjct: 673 VNTSFWFDNWSEKGPLIN 690
Score = 76.3 bits (186), Expect = 2e-10
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 4/191 (2%)
Frame = -2
Query: 2243 VLLQGVDFDSRE-EDLCIWKASAI---GEFSMKQTYNALSGTVEEVNWHHIVWFKNRIPR 2076
+LLQ + E ED +W+ FS K T+N + + + WH VWF + P+
Sbjct: 731 ILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPK 790
Query: 2075 HSIICWLACLRRLKTRSKLHRWGILENPHCLLCDQGIEDEDHLFAAFPFSNSICKGLILK 1896
S WLA RL T ++ W C+ C +E DHLF +S+ I I K
Sbjct: 791 FSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTS-IAK 849
Query: 1895 MGYVRDFFDTWDAELNWCQNEFKGDGDVATIRKLCLNSFIYHIWT*RNKRIFSSQSLSAD 1716
Y F W A +N+ ++ + D + + + I+ IW RN R +S SA
Sbjct: 850 NVYKDRFSTKWSAVVNYI-SDSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSAS 908
Query: 1715 GVSHLIATDVR 1683
+ I +R
Sbjct: 909 NLIRQIDKTIR 919
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 331 bits (849), Expect(2) = e-127
Identities = 216/710 (30%), Positives = 339/710 (47%), Gaps = 5/710 (0%)
Frame = -1
Query: 5073 QSWNFVDNYPLDNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTTFQNKNFVAAFVYGSND 4894
+ W+ + NY GRIWV W + V SS + + + F +F+Y SN
Sbjct: 299 RDWSILTNYESHRLGRIWVVWSANVRITPVFKSSQMITCSVLLEGKEEEFFCSFIYASNF 358
Query: 4893 NTQRRHPWNDLRVFAAS---NNKPWILLGDFNSILEVGDKVVCADVIYAHLS--DFRDCI 4729
+R+ W D+R S NKPW+L GDFN IL+ + + L DF++ +
Sbjct: 359 VEERKILWEDIRNHHDSPLFRNKPWMLCGDFNEILDGSEHSNYDTSPFTPLGMRDFQEVV 418
Query: 4728 QDTQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFAES*AEFLVPGISDHS 4549
+ + + DL Y G +TW N++ I K+D++LVN W F S + F G SDH+
Sbjct: 419 RYSSLTDLGYHGPRFTWCNKRENGL-ICKKLDKVLVNDSWCITFPHSYSVFEAGGCSDHT 477
Query: 4548 PSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKEPIQGNPMMVLVGKLKRLMKIL 4369
+ + P+KF + T P +R KE + P + G +K+ K+
Sbjct: 478 RGRIMLEAAAIGGRRPFKFVNVLTSIPQ-KPSLRALGKEKLGDLPKHLEEGYMKQKSKLH 536
Query: 4368 ILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSIAQVEKVAVKTYAKLAKYDXXXX 4189
+ +R + + R +SI++ I V ++T ++
Sbjct: 537 WMKVGDRNNSYFHKAAQVRRMQNSIRE----------IQGPNGVVLQTSEEIK------- 579
Query: 4188 XXXXXXXEVGDSNTRFFYSSLRERRSRNNILILNSRDNVKLEDDKAIAAECIDFFDSIFT 4009
G++ RFF L + S + + N+ ++ C + T
Sbjct: 580 ---------GEAE-RFFQEFLNHQPSDFQGMTVEELQNL-------MSFRCSATDQDMLT 622
Query: 4008 KETSSDASEAFIELLNIDKMVSVDDVVDLVKPVIRDEIVVALSSIHSTKSPGPDGFNSYF 3829
+E +S+ EI L ++ S KSPGPDG+
Sbjct: 623 REVTSE------------------------------EIQKVLFAMPSNKSPGPDGYT--- 649
Query: 3828 FKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKCDNPSTIGYFRPISCCNVIYK 3649
+N T + L+ K D + + +RPISCCNVIYK
Sbjct: 650 ---------------------------RLNATILALIPKKDEATLMRDYRPISCCNVIYK 682
Query: 3648 CISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHEIVRNYHKTSGTPRCSLKIDL 3469
ISKIIA+++K +L I NQSAF+ R + +N+LLA E+V++YHK S +PRC++KID+
Sbjct: 683 VISKIIANRLKVMLPTFILQNQSAFVRERLLMENVLLATELVKDYHKDSISPRCAMKIDI 742
Query: 3468 QKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSVMVNGSPFGFFGAKRGIRQGC 3289
KA+D V W + ++ L FP +F WI CIST+ FSV VN GFFG+KRG+RQGC
Sbjct: 743 SKAFDSVQWQFLLNTLEALKFPEKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQGC 802
Query: 3288 PISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTHLCFANDVLVFFKGTVKASQV 3109
+SPY+FV+ M V S ++ + G HPKCK LTHLCFA+D++VF G ++ +
Sbjct: 803 ALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEG 862
Query: 3108 LAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECLSCSKGVLPVR 2959
+ + ++F+ SGL I+ +K++L+ + V E+ ++I+ + G LPVR
Sbjct: 863 VINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNILSAFPFASGQLPVR 912
Score = 154 bits (389), Expect(2) = e-127
Identities = 76/198 (38%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LG PL++ ++ D PLLDKV ++ SW +R L++AGRL LI V+ + FW S + L
Sbjct: 914 LGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRL 973
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
P IKE+ + FLWSG +L+ K + WT +C + GGLGIKSL N + L+ I
Sbjct: 974 PAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLI 1033
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQD-GSWSWRRILECRSVAQQFMGVCIGNG 2420
W + S +++W NW+ + +I+ FWS + GSW W+++L R VA+ V I +G
Sbjct: 1034 WRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSG 1093
Query: 2419 ENTNFMYGFWHPNGGVID 2366
+T+F Y W ++D
Sbjct: 1094 SSTSFWYDNWSQLRQLVD 1111
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 310 bits (793), Expect(2) = e-126
Identities = 201/637 (31%), Positives = 303/637 (47%), Gaps = 2/637 (0%)
Frame = -1
Query: 4863 LRVFAASNNKPWILLGDFNSILEVGDKVVCADVIYAHLSDFRDCIQDTQIFDLSYSGCFY 4684
L V++ S+ K ++GDFN + + + +F C+ ++++ DL+YS
Sbjct: 82 LAVWSKSSKKKKRVIGDFNVTRRCEETIGGNSRFTNAMDEFNSCLHNSKLDDLNYSVL-- 139
Query: 4683 TWSNQQVGDTRIASKIDRMLVNMQWLECFAES*AEFLVPGISDHSPSVVSIFEGRFHAPP 4504
FL PGISDH+ VV +
Sbjct: 140 ----------------------------------SFLPPGISDHAAMVVKVGLPFRIRKA 165
Query: 4503 PYKFCSFWTKEPDFLDIVRQAWKEPIQGNPMMVLVGKLKRLMKILILWKQERFKKFSEQV 4324
P+KF +F DF+ IV W + G+ + KLK + + +FK
Sbjct: 166 PFKFFNFLADREDFIPIVSAVWATNVWGSKQFQVWRKLKLV--------KNQFKLL---- 213
Query: 4323 ICARDNMHSIQQQLQKFPLNSSIAQVEKVAVKTYAKLAKYDXXXXXXXXXXXEVGDSNTR 4144
N + +++ L+K S + ++K GD N+
Sbjct: 214 -----NCNVVEKLLKK---KSRVQWLKK--------------------------GDKNST 239
Query: 4143 FFYSSLRERRSRNNILILNSRDNVKLEDDKAIAAECIDFFDSIFTKETSSDASEAFIELL 3964
FF+ ++ + R+RN I +N D L K++ E FT
Sbjct: 240 FFFKTMTKHRNRNRIATINRSDGPDLA--KSLCNE--------FT--------------- 274
Query: 3963 NIDKMVSVDDVVDLVKPVIRDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAA 3784
D+I S++ KSPGPDGFN FF+ +W ++GD+ VAA
Sbjct: 275 -------------------HDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAA 315
Query: 3783 -VQNFFKSGKMLKEINCTFITLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVL 3607
V+ FF G +L E+N T ITL+ K NP+T+ FRPISCCN YK I+K++A+++K L
Sbjct: 316 AVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTL 375
Query: 3606 KGLISSNQSAFISGRSIQDNILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRA 3427
++ +QS FI GR I DNILLA EI+ +YHK G PRC+ +D+ KA D V WD I A
Sbjct: 376 HLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIA 435
Query: 3426 VMKKLGFPHQFIDWIYSCISTSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVF 3247
++ P I WI SCIS+++FSV VNG GFF +RG+RQG P+SPY+FV+ MEV
Sbjct: 436 TLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVL 495
Query: 3246 SALLKQQ-GSSGSFGLHPKCKTTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSG 3070
S ++++ S F H +C L+HLCFA+D+L+F G + + L F S
Sbjct: 496 SLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSS 555
Query: 3069 LEINCKKTSLFSSAVDEVTLSSIMECLSCSKGVLPVR 2959
L+ N ++ +F + VD + S+++ + S G PVR
Sbjct: 556 LKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVR 592
Score = 174 bits (442), Expect(2) = e-126
Identities = 81/199 (40%), Positives = 123/199 (61%), Gaps = 2/199 (1%)
Frame = -3
Query: 2968 TC*V--LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFW 2795
TC V LG+PLI+++L DC PLLD++ R+KSW+++ L+FAGRL LI+ VLS + +W
Sbjct: 588 TCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYW 647
Query: 2794 FSCFMLPKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVS 2615
S +LPK+V+K++ + FLW+G+ + V W++IC P GGLGIK L N +
Sbjct: 648 ASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKA 707
Query: 2614 ANLRHIWDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQDGSWSWRRILECRSVAQQFMGV 2435
+ HIW++ S + WT+W+ L+K FW+ P SW+WR++L+ R + F
Sbjct: 708 LMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVN 767
Query: 2434 CIGNGENTNFMYGFWHPNG 2378
IG+G T+ + WHP G
Sbjct: 768 IIGDGRATSLWFDNWHPLG 786
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 330 bits (847), Expect(2) = e-126
Identities = 188/536 (35%), Positives = 293/536 (54%), Gaps = 21/536 (3%)
Frame = -1
Query: 4503 PYKFCSFWTKEPDFLDIVRQAWKEPIQGNPMMVLVGKLKRLMKILILWKQERFKKFSEQV 4324
P+KF + TK P FL +V W P+ V L R K L K + E++
Sbjct: 547 PFKFVNVLTKLPQFLPVVESHWASSA---PLYVSTSALYRFSKKLKTLKPHLRELGKEKL 603
Query: 4323 -------------IC-------ARDNMHSIQQQLQKFPLNSSIAQVEKVAVKTYAKLAKY 4204
+C A + +I ++L+ + + ++++E+ +K +KL
Sbjct: 604 GDLPKRTREAHILLCEKQATTLANPSQETIAEELKAYTDWTHLSELEEGFLKQKSKL--- 660
Query: 4203 DXXXXXXXXXXXEVGDSNTRFFYSSLRERRSRNNILILNSRDNVKLEDDKAIAAECIDFF 4024
VGD N +F+ + + R+ RN+I + + L+ + I E FF
Sbjct: 661 ---------HWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFF 711
Query: 4023 DSIFTKETSSDASEAFIELLNI-DKMVSVDDVVDLVKPVIRDEIVVALSSIHSTKSPGPD 3847
+ +++ + +L N+ SV D L + V +EI L ++ + KSPGPD
Sbjct: 712 NEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPD 771
Query: 3846 GFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKCDNPSTIGYFRPISC 3667
G+ S FFK +WS+ G DF+AA+Q+FF G + K +N T + L+ K D + +RPISC
Sbjct: 772 GYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISC 831
Query: 3666 CNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHEIVRNYHKTSGTPRC 3487
CNV+YK ISKI+A+++K +L I NQSAF+ R + +N+LLA E+V++YHK S TPRC
Sbjct: 832 CNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRC 891
Query: 3486 SLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSVMVNGSPFGFFGAKR 3307
++KID+ KA+D V W + ++ L FP F WI CIST+ FSV VNG GFFG+ R
Sbjct: 892 AMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSR 951
Query: 3306 GIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTHLCFANDVLVFFKGT 3127
G+RQGC +SPY+FV+ M V S ++ + + G HPKC+ LTHLCFA+D++VF G
Sbjct: 952 GLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGH 1011
Query: 3126 VKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECLSCSKGVLPVR 2959
+ + + V +EF+ SGL+I+ +K++++ + V + + G LPVR
Sbjct: 1012 QWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVR 1067
Score = 152 bits (385), Expect(2) = e-126
Identities = 74/198 (37%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL++ ++ D PL++ V ++ SW +R L++AGRL L+ V+ + FW S + L
Sbjct: 1069 LGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRL 1128
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
P I+E+ + FLWSG L+ K + W+ IC P K GGLGIKSL N + L+ I
Sbjct: 1129 PAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLI 1188
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQD-GSWSWRRILECRSVAQQFMGVCIGNG 2420
W + S ++W WI + +I+ FWS + GSW W+++L+ R +A+ V + NG
Sbjct: 1189 WRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNG 1248
Query: 2419 ENTNFMYGFWHPNGGVID 2366
+T+F Y W G ++D
Sbjct: 1249 SSTSFWYDHWSHLGRLLD 1266
Score = 85.5 bits (210), Expect = 3e-13
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 11/193 (5%)
Frame = -3
Query: 6331 DLVVGCFVGKRLPFLQVKNVVQRPWNLKGE-MKMTLHGDSVFVFEFASAEDRIAA--LER 6161
DL++G F +V +V + W L + +K+ + +F E + A L R
Sbjct: 67 DLLIGRFPQISPHIAKVHVIVNKIWPLGDKTVKIDAYVVDTKTIKFRIRESSVRARVLRR 126
Query: 6160 ECFFISIQPFVVRPWSLLI*QELATLKTIPIWVNLKDVPIHLWNPKGLGKLASFIGVPLM 5981
+ I+ P +V WS + +KT+P+W+ +K+VP ++ KGL LAS IG P
Sbjct: 127 GMWNIADMPMIVSKWSPVAEDAQPEIKTMPMWITIKNVPRSMFTWKGLSFLASPIGEPKK 186
Query: 5980 LHKQTATTSRMTYARVCVEVNVDSDLPSQ--------IDAMVGNVRIKVPVEYNWKPQKC 5825
LH T + A+V VE ++ ++P Q +DAM V +Y W P +C
Sbjct: 187 LHPDTVLCNSFEEAKVFVEADLTQEMPKQFRFKSETGVDAM-------VEYKYPWLPPRC 239
Query: 5824 SHCAVFGHTRDKC 5786
S C+ +GH ++ C
Sbjct: 240 SSCSKWGHIQEVC 252
Score = 67.0 bits (162), Expect = 1e-07
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 7/181 (3%)
Frame = -2
Query: 2204 DLCIWKASAIG---EFSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLK 2034
D+ +W++ F K T+N + + NW+ VWF P++S + WL RL
Sbjct: 1321 DISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLS 1380
Query: 2033 TRSKLHRWGILENPHCLLCDQGIEDEDHLFAAFPFSNSICKGL---ILKMGYVRDFFDTW 1863
T ++ W + C LC+ E DHLF + +++ + + L +L Y RD W
Sbjct: 1381 TGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRD----W 1436
Query: 1862 DAELN-WCQNEFKGDGDVATIRKLCLNSFIYHIWT*RNKRIFSSQSLSADGVSHLIATDV 1686
+ C + D + + + IYHIW RN R S + + LI V
Sbjct: 1437 NRLFTLLCTSNLPRDH--LFLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTV 1494
Query: 1685 R 1683
R
Sbjct: 1495 R 1495
Score = 61.2 bits (147), Expect = 6e-06
Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -1
Query: 5040 DNSGRIWVGWDPEIMFAVVIHSSSQSIFLDVTTFQNKNFVAAFVYGSNDNTQRRHPWNDL 4861
+ GRIWV W V SS + + + F +F+Y SN +RR W D+
Sbjct: 425 NTKGRIWVVWRDNARLTPVFKSSQMITCSILLEGKEEEFFCSFIYASNFVEERRILWEDI 484
Query: 4860 RVFAAS---NNKPWILLGDFNSILEVGD 4786
R S NKPWIL GDFN ILE G+
Sbjct: 485 RSHHDSPLIRNKPWILCGDFNEILEGGE 512
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 379 bits (973), Expect(2) = e-125
Identities = 227/663 (34%), Positives = 360/663 (54%), Gaps = 14/663 (2%)
Frame = -1
Query: 4947 TTFQNKNFVAAFVYGSNDNTQRRHPWNDLRVFAAS---NNKPWILLGDFNSILEVGDKVV 4777
T F + + V + VY +N+ R+ W +L + + S N KPWI+LGDFN +L +
Sbjct: 46 TEFLDDSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQ 105
Query: 4776 CADV-IYAHLSDFRDCIQDTQIFDLSYSGCFYTWSNQQVGDTR-IASKIDRMLVNMQWLE 4603
+ + + FRDC+ + ++ DL + G +TW N+ TR +A K+DR+LVN W
Sbjct: 106 ATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSA--TRPVAKKLDRILVNESWCS 163
Query: 4602 CFAES*AEFLVPGISDHSPSVVSIFEGRFHAPPPYKFCSFWTKEPDFLDIVRQAWKE-PI 4426
F + A F P SDH+ V I P++F +F + PDF+ +V + W +
Sbjct: 164 RFPSAYAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINV 223
Query: 4425 QGNPMMVLVGKLKRLMKILILWKQERFKKFSEQVICARDNMHSIQQQLQKFPLNSSIAQV 4246
G+ M + KLK L + + E F ++V A + + Q + P + A +
Sbjct: 224 VGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAA-L 282
Query: 4245 EKVAVKTYAKLAKYDXXXXXXXXXXXEVG--DSNTRFFYSSLRERRSRNNILILNSRDNV 4072
E A + + L K + +G DSNT +F+ R++ N I I+ + V
Sbjct: 283 EMEAQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGV 342
Query: 4071 KLEDDKAIAAECIDFFDSIFTKETSSDA--SEAFIELLNIDKMVSVDDVVDLVKPVIRDE 3898
K++ I CI++F ++ E E F LL S D +L R +
Sbjct: 343 KIDTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPF--RCSHDQKKELAMSFSRQD 400
Query: 3897 IVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLL 3718
I A S S K+ GPDGF FFK +WS++G + AV FF S +LK+ N T + L+
Sbjct: 401 IKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLI 460
Query: 3717 AKCDNPSTIGYFRPISCCN----VIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQD 3550
K N S + FRPISC + +YK I++++ ++++ +L +IS QSAF+ GR + +
Sbjct: 461 PKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAE 520
Query: 3549 NILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCI 3370
N+LLA E+V+ Y++ + PR LK+DL+KA+D + WD I + +K +G P +F+ WI CI
Sbjct: 521 NVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCI 580
Query: 3369 STSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKC 3190
ST FSV VNG+ GFF + RG+RQG P+SP++FV+ MEVFS+LL + +G HPK
Sbjct: 581 STPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKT 640
Query: 3189 KTTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTL 3010
++HL FA+D++VFF G + ++ +E+F+ +SGL +N +KT L+ + +D +
Sbjct: 641 SPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEA 700
Query: 3009 SSI 3001
S+I
Sbjct: 701 STI 703
Score = 100 bits (248), Expect(2) = e-125
Identities = 47/117 (40%), Positives = 74/117 (63%)
Frame = -3
Query: 2941 ISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFMLPKRVI 2762
I+ +L + PLL+K+ KR +SW + L+FAGR+ LI V+SG+I FW S F+LPK +
Sbjct: 703 IARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCV 762
Query: 2761 KELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHIWD 2591
K + ++ RFLWSG+ KK V W+++C P + GG+G++ + N + +WD
Sbjct: 763 KRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLRRFTVLNTT-----LWD 814
Score = 88.6 bits (218), Expect = 4e-14
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 1/158 (0%)
Frame = -2
Query: 2168 FSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLHRWGILENPH 1989
FS +T+ A+ +W VWFK +P+H+ W++ L RL TR +L WG+
Sbjct: 904 FSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTD 963
Query: 1988 CLLCDQGIEDEDHLFAAFPFSNSICKGLILKMGYVRDFFDTWDAELNWCQ-NEFKGDGDV 1812
C LC E DHL FS I K + ++ + F++W L+W + N K
Sbjct: 964 CCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSWAELLSWTRINSSKAP--- 1020
Query: 1811 ATIRKLCLNSFIYHIWT*RNKRIFSSQSLSADGVSHLI 1698
+ +RK+ + ++H+W RN + +S +S V H I
Sbjct: 1021 SLLRKIAAQASVFHLWKQRNNVLHNSIFISPATVFHFI 1058
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 375 bits (964), Expect(2) = e-124
Identities = 231/670 (34%), Positives = 361/670 (53%), Gaps = 27/670 (4%)
Frame = -1
Query: 4887 QRRHPWNDLRVFAAS---NNKPWILLGDFNSILEVGDKVVCAD--VIYAHLSDFRDCIQD 4723
+R+ WNDLR + S +KPWI+ GDFN IL++ + + V + DF+ +
Sbjct: 3 ERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNH 62
Query: 4722 TQIFDLSYSGCFYTWSNQQVGDTRIASKIDRMLVNMQWLECFAES*AEFLVPGISDHSPS 4543
I DL+Y G +TWSN++ D IA K+DR+LVN WL+ F S + F G SDH
Sbjct: 63 CSITDLAYHGPLFTWSNKRENDL-IAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRC 121
Query: 4542 VVSIFEGR---FHAPPPYKFCSFWTKEPDFLDIVRQAWKEP----IQGNPMMVLVGKLKR 4384
+++ G P+KF + T+ F+ V W E + + + KLK
Sbjct: 122 RINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKG 181
Query: 4383 LMKILILWKQERFKKFSEQV------ICARDNMH-------SIQQQLQKFPLNSSIAQVE 4243
L +L +ER +Q +C + M S+Q++ + + IA +E
Sbjct: 182 LKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQEENEAYAKWDHIAVLE 241
Query: 4242 KVAVKTYAKLAKYDXXXXXXXXXXXEVGDSNTRFFYSSLRERRSRNNILILNSRDNVKLE 4063
+ +K +KL D +GD N + F+ ++ R ++N+I + D
Sbjct: 242 EKFLKQRSKLHWLD------------IGDRNNKAFHRAVVAREAQNSIREIICHDGSVAS 289
Query: 4062 DDKAIAAECIDFFDSIFTKETSSDASEAFIELLN--IDKMVSVDDVVDLVKPVIRDEIVV 3889
++ I E F F + +D +E L + S D L V +EI
Sbjct: 290 QEEKIKTEAEHHFRE-FLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHK 348
Query: 3888 ALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFKSGKMLKEINCTFITLLAKC 3709
+ S+ + KSPGPDG+ + F+K +W+I+G +F+ A+Q+FF G + K IN T + L+ K
Sbjct: 349 VVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKK 408
Query: 3708 DNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSNQSAFISGRSIQDNILLAHE 3529
+ +RPISCCNV+YK ISKIIA+++K VL I NQSAF+ R + +N+LLA E
Sbjct: 409 KEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATE 468
Query: 3528 IVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGFPHQFIDWIYSCISTSRFSV 3349
IV++YHK S + RC+LKID+ KA+D V W + V++ + FP +F WI CI+T+ FSV
Sbjct: 469 IVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSV 528
Query: 3348 MVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQGSSGSFGLHPKCKTTQLTH 3169
VNG G F + R +RQGC +SPY+FV+ M+V S +L + + FG HPKC+ LTH
Sbjct: 529 QVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTH 588
Query: 3168 LCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKTSLFSSAVDEVTLSSIMECL 2989
L FA+D+++ G V++ + V+ EF+++SGL+I+ +K++++ + V I++
Sbjct: 589 LSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKF 648
Query: 2988 SCSKGVLPVR 2959
S G LPVR
Sbjct: 649 SFDVGKLPVR 658
Score = 101 bits (252), Expect(2) = e-124
Identities = 45/99 (45%), Positives = 65/99 (65%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL+S RL +DCLPL++++ K++++W SR L+FAGRL LI L + FW + F L
Sbjct: 660 LGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRL 719
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLK 2660
P+ I+E++ + FLWSG++L V W IC P K
Sbjct: 720 PRACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPKK 758
Score = 75.1 bits (183), Expect = 4e-10
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Frame = -2
Query: 2195 IWKASAIGEFSMKQTYNALSGTVEEVNWHHIVWFKNRIPRHSIICWLACLRRLKTRSKLH 2016
+W + + K ++ A+ +E WH VWF + P+HS WLA +L T ++
Sbjct: 735 LWSGTELSSNKAKVSWEAICKPKKEA-WHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQ 793
Query: 2015 RWGILENPHCLLCDQGIEDEDHLFAAFPFSNSICKGL---ILKMGYVRDFFDTWDAELNW 1845
W + + C+LC+ +E DHLF + +++ I + L +L+ Y D W +++
Sbjct: 794 HWNLQSSVGCVLCNNNLETRDHLFFSCAYTSGIWEALAKNLLQRSYTTD----WQTIISY 849
Query: 1844 CQNEFKGDGDVATIRKLCLNSFIYHIWT*RNKR 1746
+ D + + L + +Y IW RN R
Sbjct: 850 VSGQCH-DRVSCFLARSVLQASVYTIWRERNGR 881
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 304 bits (779), Expect(2) = e-120
Identities = 149/329 (45%), Positives = 215/329 (65%)
Frame = -1
Query: 3945 SVDDVVDLVKPVIRDEIVVALSSIHSTKSPGPDGFNSYFFKFSWSIVGDDFVAAVQNFFK 3766
S D L + V +E L ++ S K PGPDG+ S FFK +WSI G DF+AA+++FF
Sbjct: 15 SATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFI 74
Query: 3765 SGKMLKEINCTFITLLAKCDNPSTIGYFRPISCCNVIYKCISKIIASKMKFVLKGLISSN 3586
G + K +N T + L+ K D + + +RPISCCNVIYK ISKIIA+++K +L I N
Sbjct: 75 KGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQN 134
Query: 3585 QSAFISGRSIQDNILLAHEIVRNYHKTSGTPRCSLKIDLQKAYDIVSWDPIRAVMKKLGF 3406
QSAF+ R + +N+LLA E+V++YHK S +PRC++KID+ KA+D V W + ++ L F
Sbjct: 135 QSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNF 194
Query: 3405 PHQFIDWIYSCISTSRFSVMVNGSPFGFFGAKRGIRQGCPISPYIFVMVMEVFSALLKQQ 3226
P F WI CIST+ FSV VNG GFFG+KRG+RQGC +SPY+FV+ M V S ++
Sbjct: 195 PENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVA 254
Query: 3225 GSSGSFGLHPKCKTTQLTHLCFANDVLVFFKGTVKASQVLAGVIEEFSQFSGLEINCKKT 3046
+ G HPKCK LTHLCFA+D++VF G ++ + + + +EF+ SGL I+ +K+
Sbjct: 255 AVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKS 314
Query: 3045 SLFSSAVDEVTLSSIMECLSCSKGVLPVR 2959
+L+ + V E+ ++I+ + G LPVR
Sbjct: 315 TLYLAGVSELNRNNILSAFPFASGQLPVR 343
Score = 159 bits (402), Expect(2) = e-120
Identities = 78/198 (39%), Positives = 118/198 (59%), Gaps = 1/198 (0%)
Frame = -3
Query: 2956 LGLPLISTRLYYNDCLPLLDKVTKRVKSWKSRHLAFAGRLMLIKHVLSGMIYFWFSCFML 2777
LGLPL++ ++ D PLLDKV ++ SW +R L++AGRL LI V+ + FW S + L
Sbjct: 345 LGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRL 404
Query: 2776 PKRVIKELNSIFKRFLWSGSDLDKKHNPVGWTQICTPLKSGGLGIKSLDIRNVSANLRHI 2597
P IKE+ + FLWSG +L+ K + WT +C + GGLGIKSL N + L+ I
Sbjct: 405 PAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLI 464
Query: 2596 WDINSG*NTIWTNWIHSNLIKSKDFWSMSTPQD-GSWSWRRILECRSVAQQFMGVCIGNG 2420
W + S +++W NW+ + +I+ FWS + GSW W+++L+ R VA+ V I +G
Sbjct: 465 WRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSG 524
Query: 2419 ENTNFMYGFWHPNGGVID 2366
+T+F Y W G ++D
Sbjct: 525 SSTSFWYDNWSQLGQLVD 542