BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00000383
         (2291 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002129244.1| PREDICTED: 40S ribosomal protein S3 [Ciona i...    44   7e-09
ref|XP_003376321.1| 40S ribosomal protein S3-A [Trichinella spir...    42   2e-07
gb|AAQ54656.1| 40S ribosomal protein S3 [Oikopleura dioica] gi|3...    40   3e-06

>ref|XP_002129244.1| PREDICTED: 40S ribosomal protein S3 [Ciona intestinalis]
          Length = 260

 Score = 43.9 bits (102), Expect(3) = 7e-09
 Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 17/57 (29%)
 Frame = +3

Query: 2166 SLRYKLLGGIAVRRL-----------------LIVSGKLREFRAKTMEFKDEYMISS 2285
            SLRYKLLGG+AVRR                  ++VSGKLR  RAK M+F D  MI S
Sbjct: 104  SLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKAMKFVDGLMIHS 160



 Score = 42.4 bits (98), Expect(3) = 7e-09
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +1

Query: 1930 QFVADGVFFAELNEVLTRELAEDGYS 2007
            +FV DG+F AELNE+L RELAEDGYS
Sbjct: 10   KFVNDGLFKAELNELLWRELAEDGYS 35



 Score = 22.3 bits (46), Expect(3) = 7e-09
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 1997 MVTRTQNLL---GKETKLLTVMFWYRSEIRD 2080
            + TRTQN+L   G+  + LT M   R + +D
Sbjct: 51   LATRTQNVLGEKGRRIRELTAMVQKRFKFKD 81


>ref|XP_003376321.1| 40S ribosomal protein S3-A [Trichinella spiralis]
            gi|316974969|gb|EFV58434.1| 40S ribosomal protein S3-A
            [Trichinella spiralis]
          Length = 330

 Score = 41.6 bits (96), Expect(3) = 2e-07
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +1

Query: 1930 QFVADGVFFAELNEVLTRELAEDGYS 2007
            +F+ADGVF AELN    RELAEDGYS
Sbjct: 104  KFIADGVFKAELNNFFMRELAEDGYS 129



 Score = 40.4 bits (93), Expect(3) = 2e-07
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 17/57 (29%)
 Frame = +3

Query: 2166 SLRYKLLGGIAVRRL-----------------LIVSGKLREFRAKTMEFKDEYMISS 2285
            SLR+KL+GG+ VRR                  +IVSGKLR  RAK+M+F D  MI S
Sbjct: 196  SLRFKLIGGLPVRRACYGILRYIMESQAKGCEVIVSGKLRGQRAKSMKFVDGLMIHS 252



 Score = 21.9 bits (45), Expect(3) = 2e-07
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 1997 MVTRTQNLLGKETKLLTVMFWYRSEIRDLISFV 2095
            M TRTQN+LG++ +           IR+L S V
Sbjct: 145  MATRTQNVLGEKGR----------RIRELTSLV 167


>gb|AAQ54656.1| 40S ribosomal protein S3 [Oikopleura dioica]
            gi|313212505|emb|CBY36474.1| unnamed protein product
            [Oikopleura dioica] gi|313217134|emb|CBY38302.1| unnamed
            protein product [Oikopleura dioica]
            gi|313233568|emb|CBY09740.1| unnamed protein product
            [Oikopleura dioica]
          Length = 239

 Score = 40.0 bits (92), Expect(3) = 3e-06
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 17/55 (30%)
 Frame = +3

Query: 2166 SLRYKLLGGIAVRRL-----------------LIVSGKLREFRAKTMEFKDEYMI 2279
            SLRYKL GG+AVRR                  +++SGKLR  RAK M+F D  MI
Sbjct: 107  SLRYKLEGGLAVRRAAYGVLRFIMESGAKGCEVVISGKLRGQRAKAMKFTDGLMI 161



 Score = 35.4 bits (80), Expect(3) = 3e-06
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +1

Query: 1936 VADGVFFAELNEVLTRELAEDGYS 2007
            VA+GVF AEL+  L +ELAEDGYS
Sbjct: 15   VAEGVFRAELDGYLRKELAEDGYS 38



 Score = 24.3 bits (51), Expect(3) = 3e-06
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 1997 MVTRTQNLLG---KETKLLTVMFWYRSEIRD 2080
            + TRTQN+LG   K  + LT +   R +I+D
Sbjct: 54   LATRTQNVLGDKAKRIRELTALVQKRFQIKD 84