BLASTX nr result

ID: Papaver27_contig00000229 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00000229
         (2276 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU31709.1| hypothetical protein MIMGU_mgv1a024293mg, partial...   167   3e-38
gb|ABB46871.2| retrotransposon protein, putative, Ty3-gypsy subc...   145   6e-32
gb|AAM01019.1|AC090488_19 Putative retroelement [Oryza sativa Ja...   145   6e-32
gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa] gi...   145   1e-31
gb|ABA94439.1| retrotransposon protein, putative, Ty3-gypsy subc...   144   1e-31
emb|CAH66904.1| H0823A09.5 [Oryza sativa Indica Group]                144   2e-31
emb|CAH66707.1| OSIGBa0147J19.11 [Oryza sativa Indica Group]          144   2e-31
gb|ABA94569.1| retrotransposon protein, putative, Ty3-gypsy subc...   143   3e-31
emb|CAH67121.1| H0502G05.12 [Oryza sativa Indica Group]               143   3e-31
gb|ABA98204.1| retrotransposon protein, putative, Ty3-gypsy subc...   143   4e-31
gb|AAN04919.1| Putative polyprotein [Oryza sativa Japonica Group...   143   4e-31
gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]     143   4e-31
gb|AAL69439.1|AC098565_21 Putative polyprotein [Oryza sativa]         143   4e-31
gb|ABA97433.1| retrotransposon protein, putative, Ty3-gypsy subc...   142   5e-31
gb|AAP53928.1| retrotransposon protein, putative, Ty3-gypsy subc...   142   5e-31
gb|ABA96609.1| retrotransposon protein, putative, Ty3-gypsy subc...   142   9e-31
emb|CAH65904.1| H0207B04.5 [Oryza sativa Indica Group]                142   9e-31
gb|AAV31295.1| putative polyprotein [Oryza sativa Japonica Group]     142   9e-31
gb|AAT85240.1| putative polyprotein [Oryza sativa Japonica Group]     142   9e-31
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa Japonica Group]         142   9e-31

>gb|EYU31709.1| hypothetical protein MIMGU_mgv1a024293mg, partial [Mimulus guttatus]
          Length = 674

 Score =  167 bits (422), Expect = 3e-38
 Identities = 130/451 (28%), Positives = 207/451 (45%), Gaps = 31/451 (6%)
 Frame = -2

Query: 1261 QYLKLAPEEFSGTPPNPEKAEEWLQHAEHVLEHVS-NDRDTWVKFVTYRFRGPSRDWWNA 1085
            ++L+L    F G P +P  AEEWL+     L+     D    V F  ++ +G +  WW  
Sbjct: 89   EFLRLDTPTFHGEP-DPLAAEEWLEQITRNLDTSRITDGGMRVSFAVHQLKGDAYHWWKR 147

Query: 1084 VIKAEGGTITWDRFKVLFMDQYVPDSVRDRKFSEFMSLTKGGMSISAYNDKFLRLSRYGT 905
            V         ++ F  +F+D+Y P++ RD    +FM L +G MS++ Y  KF  L+R+  
Sbjct: 148  VKLTVADN--FETFSRVFLDRYFPETTRDTFRQQFMDLIQGNMSVAHYEAKFTSLARFAN 205

Query: 904  ELIATDEAKEKKFIRGLDSEMRKQLSCLRIKTYEDA*TYEDALNRPLDYEKEMEDQLVT* 725
            EL++T+E + K+F RGL   +R++L+ LRI+TY D       +   L   + + D     
Sbjct: 206  ELVSTEELRCKRFERGLKISIRERLAALRIRTYSDIVDTAATVEETLQDTRRIRD----- 260

Query: 724  VRERPPQFSARQDP----AKRQMMS----------FPGQTFYIPPIRP--WQPGSTSRPI 593
               RP Q     D     AKRQ  S             ++ ++  I P    P ST+   
Sbjct: 261  --SRPQQGGNTIDSEGRFAKRQKSSNSVSHAQGKHQSSKSVHVESIAPTAHTPQSTTCYH 318

Query: 592  APRPPSVR---PQGQTF*PQGRWMRFQQVRPATLTNSDSSFERCWECGKTDHLRRDCPQL 422
              +P   R   PQ +     G+  R  Q +P  +  S+     C+ CG+  H+ R CPQ 
Sbjct: 319  CHQPGHRRYDCPQREK--RAGQLQRPYQGQPQGIIQSNRP-PTCYSCGEAGHISRYCPQS 375

Query: 421  RKPPTGLSQQGMVYASESA*ISTPETSQENQ-------VFYTMME----GDGSATNQVVE 275
            +  P         ++++SA   T    ++           Y+++      + S+   V +
Sbjct: 376  QGTPNMAKSYPPTHSTQSAPPRTHVGGKQGHGGHGTQGRVYSVVRAPNLAEESSNPSVAQ 435

Query: 274  GKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGKMLVLATPLGRRNCPFQVCQK 95
            G  L+FN    VL D+G++ S I+L     LGLK       L + TP+       ++C+ 
Sbjct: 436  GTFLVFNSWASVLIDTGASHSFISLAFALSLGLKIEALDVPLCIDTPVSGGVTLREICRS 495

Query: 94   CVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
            C + + D  L  DL++L M  FDVILGMDWL
Sbjct: 496  CEIKIADHSLVFDLIILDMVSFDVILGMDWL 526


>gb|ABB46871.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1446

 Score =  145 bits (367), Expect = 6e-32
 Identities = 130/471 (27%), Positives = 196/471 (41%), Gaps = 28/471 (5%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+  + +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 65   HQQMHQRMMQHVEQQHQHFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 123

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 124  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 183

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 184  KKREFRALHQGNRTVTEYLHEFNRLTRYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 240

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + PGQ     
Sbjct: 241  GDYADFERLVDKAIRQEDQRNKMDR------KRKATQFRAPQGSHQRPRFT-PGQQGGPT 293

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQV 515
            T  +   RP+ P               G ++R  APRPP    Q     P  +  +    
Sbjct: 294  TMIVRQYRPFNPSNFPQGSSGSQNHHGGQSNRGAAPRPPMAPAQSG---PSAQAKKETGA 350

Query: 514  RPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQE 335
            +P +          C+ CG+  H    CP+ R+      Q  + +AS             
Sbjct: 351  KPGS----------CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE----------- 389

Query: 334  NQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGK 155
                      +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R     
Sbjct: 390  ----------EAQAAPEVVLGTFPVNSIPAIVLFDSGATHSFISKKFVGMHGLIREKLST 439

Query: 154  MLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
             + + TP G  +   Q      + +      A+L++L     DVILGMDWL
Sbjct: 440  PMRVHTP-GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWL 489


>gb|AAM01019.1|AC090488_19 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1475

 Score =  145 bits (367), Expect = 6e-32
 Identities = 130/471 (27%), Positives = 196/471 (41%), Gaps = 28/471 (5%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+  + +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 65   HQQMHQRMMQHVEQQHQHFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 123

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 124  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 183

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 184  KKREFRALHQGNRTVTEYLHEFNRLTRYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 240

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + PGQ     
Sbjct: 241  GDYADFERLVDKAIRQEDQRNKMDR------KRKATQFRAPQGSHQRPRFT-PGQQGGPT 293

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQV 515
            T  +   RP+ P               G ++R  APRPP    Q     P  +  +    
Sbjct: 294  TMIVRQYRPFNPSNFPQGSSGSQNHHGGQSNRGAAPRPPMAPAQSG---PSAQAKKETGA 350

Query: 514  RPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQE 335
            +P +          C+ CG+  H    CP+ R+      Q  + +AS             
Sbjct: 351  KPGS----------CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE----------- 389

Query: 334  NQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGK 155
                      +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R     
Sbjct: 390  ----------EAQAAPEVVLGTFPVNSIPAIVLFDSGATHSFISKKFVGMHGLIREKLST 439

Query: 154  MLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
             + + TP G  +   Q      + +      A+L++L     DVILGMDWL
Sbjct: 440  PMRVHTP-GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWL 489


>gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa]
            gi|21321760|gb|AAM47295.1|AC122146_14 Putative
            polyprotein [Oryza sativa Japonica Group]
            gi|31430576|gb|AAP52470.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1819

 Score =  145 bits (365), Expect = 1e-31
 Identities = 134/472 (28%), Positives = 195/472 (41%), Gaps = 29/472 (6%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+    +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 363  HQQMHQRMMQYAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 421

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 422  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 481

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 482  KKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 538

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + PGQ     
Sbjct: 539  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQFRAHQGSHQRPRFT-PGQQGGPT 591

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQ-GQTF*PQGRWMRFQQ 518
            T  +   RP+ P               G  +R  APRPP    Q GQ            Q
Sbjct: 592  TMIVRQHRPFNPSNFHQGTSGSQNHHGGQPNRGAAPRPPMAPAQSGQP----------TQ 641

Query: 517  VRPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQ 338
             +  T     S    C+ CG+  H    CP+ R+      Q  + +AS            
Sbjct: 642  AKKETGAKPGS----CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE---------- 687

Query: 337  ENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTG 158
                       +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R    
Sbjct: 688  -----------EAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELS 736

Query: 157  KMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
              + + TP G  +   Q      + +      A+L++L   G DVILGMDWL
Sbjct: 737  TPMRVHTP-GNSSTSVQFSPSITIEIQRSPFLANLILLDSKGLDVILGMDWL 787


>gb|ABA94439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1267

 Score =  144 bits (364), Expect = 1e-31
 Identities = 128/471 (27%), Positives = 196/471 (41%), Gaps = 28/471 (5%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+    +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 65   HQQMHQRMMQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 123

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 124  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 183

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 184  KKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 240

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + PGQ     
Sbjct: 241  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQFRAPQGSHQRPRFT-PGQQGGPT 293

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQV 515
            T  +   RP+ P               G ++R  APRPP    Q     P  +  +    
Sbjct: 294  TMIVRQHRPFNPSNFPQGASGSQNHHGGQSNRGAAPRPPMAPAQSS---PPAQAKKETGA 350

Query: 514  RPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQE 335
            +P +          C+ CG+  H    CP+ R+      Q  + +AS             
Sbjct: 351  KPGS----------CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE----------- 389

Query: 334  NQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGK 155
                      +  A  +VV G   + +    VLFDSG+T S I+ + V   GL++     
Sbjct: 390  ----------EAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELST 439

Query: 154  MLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
             + + TP G  +         ++ +      A+L++L     DVILGMDWL
Sbjct: 440  PMRVHTP-GNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 489


>emb|CAH66904.1| H0823A09.5 [Oryza sativa Indica Group]
          Length = 1716

 Score =  144 bits (362), Expect = 2e-31
 Identities = 133/472 (28%), Positives = 196/472 (41%), Gaps = 29/472 (6%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+  + +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 329  HQQMHQRMMQHVEQQHQHFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 387

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 388  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 447

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 448  KKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 504

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + PGQ     
Sbjct: 505  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQFRAPQGSHQRPRFT-PGQQGGPT 557

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQ-GQTF*PQGRWMRFQQ 518
            T  +   RP+ P               G  +R  APRPP    Q GQ            Q
Sbjct: 558  TMIVRQHRPFNPSNFHQGTSGSQNHHGGQPNRGAAPRPPVAPAQSGQP----------AQ 607

Query: 517  VRPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQ 338
             +  T     S    C+ CG+  H    CP+ R+     +Q  + +AS            
Sbjct: 608  AKKETGAKPGS----CFNCGELGHFADKCPKPRRAGPRFNQARVNHASAE---------- 653

Query: 337  ENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTG 158
                       +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R    
Sbjct: 654  -----------EAQAVPEVVLGTFPVNSIPATVLFDSGATHSFISTKFVGMHGLIREELS 702

Query: 157  KMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
              + + TP G  +   Q      + +      A+L++L     DVILGMDWL
Sbjct: 703  TPMRVHTP-GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWL 753


>emb|CAH66707.1| OSIGBa0147J19.11 [Oryza sativa Indica Group]
          Length = 1851

 Score =  144 bits (362), Expect = 2e-31
 Identities = 125/447 (27%), Positives = 189/447 (42%), Gaps = 28/447 (6%)
 Frame = -2

Query: 1258 YLKLAPEEFSGTPPNPEKAEEWLQHAEHVLEHVSNDRDTWVKFVTYRFRGPSRDWWNAVI 1079
            +L+  P EFS T   P +A++WL+  +  L  V         + +++ RGP+ DWW    
Sbjct: 421  FLRSRPPEFSQTV-EPVEADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYC 479

Query: 1078 KA--EGGTITWDRFKVLFMDQYVPDSVRDRKFSEFMSLTKGGMSISAYNDKFLRLSRYGT 905
             A  E   I WD F + F   +VP+S  D K  EF  L +G  S++ Y  +F +L+RY  
Sbjct: 480  NAHPEPTNIVWDEFAMAFRAAHVPESTIDMKKEEFNRLKQGNSSVNEYLSQFNKLARYAP 539

Query: 904  ELIATDEAKEKKFIRGLDSEMRKQLSCLRIKTYEDA*TYEDALNRPLDYEKEMEDQLVT* 725
            E + TD+ K +KF++G+   MR Q+         D  T++  +N+ L  E   ++     
Sbjct: 540  EEVNTDKKKIRKFLKGIAVGMRLQMLA------HDFPTFQHMINKALLLEDARKEATEEY 593

Query: 724  VRERPPQFSARQDPAKRQMMSFPGQTFYIPPIRPWQPGSTSRPIAPRPPSVRPQGQTF*P 545
             + +          A R     P Q          QPG   RP   RP    PQ Q   P
Sbjct: 594  KKRKSNHQGNSSRGAPRPRYGQPMQYHQSVTQANHQPGYAPRPQMNRP---APQPQQRAP 650

Query: 544  QGRWMRFQQVRPATLTNSDSSFE--------RCWECGKTDHLRRDCPQLRKPPTGLSQQG 389
             G           T  NS +SF+        +C+ C +T H  R CPQ    PT  +  G
Sbjct: 651  SGN----------TAPNSVTSFKSPQGPSAVQCFRCNQTGHYARQCPQ---NPTN-TNSG 696

Query: 388  MVYASESA*ISTPETSQENQVFYTMMEGDGSATN------------------QVVEGKIL 263
                S +A   TP  +Q         +G  ++ N                   VV G   
Sbjct: 697  HANGS-TARTPTPAVAQSRPSSQASGQGSRASNNFGRGRVNHIQAETAQDAPDVVMGMFS 755

Query: 262  LFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGKMLVLATPLGRRNCPFQVCQKCVLM 83
            + +    VLFDSG++ S I+   V   G K       +++ +P GR     Q+C +  L 
Sbjct: 756  VNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSP-GRNIRATQICPEVNLR 814

Query: 82   VDDQELFADLVVL*MCGFDVILGMDWL 2
            +++ +  A  +VL     D+ILGMDWL
Sbjct: 815  IEEVDFLAKPIVLDSQSLDIILGMDWL 841


>gb|ABA94569.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1777

 Score =  143 bits (361), Expect = 3e-31
 Identities = 129/471 (27%), Positives = 195/471 (41%), Gaps = 28/471 (5%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+    +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 321  HQQMHQRMMQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 379

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 380  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 439

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 440  KKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 496

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + PGQ     
Sbjct: 497  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQFRAPQGSHQRPRFT-PGQQGGPT 549

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQV 515
            T  +   RP+ P               G  +R  APRPP    Q     P  +  +    
Sbjct: 550  TMIVRQHRPFNPSNFHPGSSGSQNHHGGQPNRGTAPRPPMAPAQSG---PPAQAKKETGA 606

Query: 514  RPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQE 335
            +P +          C+ CG+  H    CP+ R+      Q  + +AS     + PE    
Sbjct: 607  KPGS----------CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAEEAQTAPE---- 652

Query: 334  NQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGK 155
                             VV G   + +    VLFDSG+T S I+ + V   GL++     
Sbjct: 653  -----------------VVLGTFPVNSIPATVLFDSGATHSFISKKFVGRYGLRKEELST 695

Query: 154  MLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
             + + TP G  +         ++ +      A+L++L     DVILGMDWL
Sbjct: 696  PMRVHTP-GNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 745


>emb|CAH67121.1| H0502G05.12 [Oryza sativa Indica Group]
          Length = 1877

 Score =  143 bits (361), Expect = 3e-31
 Identities = 126/447 (28%), Positives = 187/447 (41%), Gaps = 28/447 (6%)
 Frame = -2

Query: 1258 YLKLAPEEFSGTPPNPEKAEEWLQHAEHVLEHVSNDRDTWVKFVTYRFRGPSRDWWNAVI 1079
            +L+  P EFS T   P +A++WL+  +  L  V         + +++ RGP+ DWW    
Sbjct: 447  FLRSRPPEFSQTV-EPVEADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYC 505

Query: 1078 KA--EGGTITWDRFKVLFMDQYVPDSVRDRKFSEFMSLTKGGMSISAYNDKFLRLSRYGT 905
             A  E   I WD F   F   +VP+S  D K  EF  L +G  SI+ Y  +F +L+RY  
Sbjct: 506  NAHPEPTNIAWDEFATAFRAAHVPESTIDMKKEEFNRLKQGNSSINEYLSQFNKLARYAP 565

Query: 904  ELIATDEAKEKKFIRGLDSEMRKQLSCLRIKTYEDA*TYEDALNRPLDYEKEMEDQLVT* 725
            E + TD+ K +KF++G+   MR QL         D  T++  +N+ L  E   ++     
Sbjct: 566  EEVDTDKKKIRKFLKGIAVGMRLQLLA------HDFPTFQHMINKALLLEDARKEATEEY 619

Query: 724  VRERPPQFSARQDPAKRQMMSFPGQTFYIPPIRPWQPGSTSRPIAPRPPSVRPQGQTF*P 545
             + +          A R     P Q          QPG   RP   RP    PQ Q   P
Sbjct: 620  KKRKSNHQGNSSRGAPRPRYGQPMQYHQSVTQANRQPGYAPRPQINRP---APQPQQRAP 676

Query: 544  QGRWMRFQQVRPATLTNSDSSFE--------RCWECGKTDHLRRDCPQLRKPPTGLSQQG 389
             G           T  NS +SF+        +C+ C +  H  R CPQ   PP   +  G
Sbjct: 677  SGN----------TAPNSVTSFKSPQGPSAVQCFRCNQMGHYARQCPQ--NPPN--TNSG 722

Query: 388  MVYASESA*ISTPETSQENQVFYTMMEGDGSATN------------------QVVEGKIL 263
                S +A   TP  +Q         +G  ++ N                   VV G   
Sbjct: 723  HANGS-TARTPTPAATQSRPSSQASGQGSRASNNFGRGRVNHIQAETAQDAPDVVMGMFS 781

Query: 262  LFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGKMLVLATPLGRRNCPFQVCQKCVLM 83
            + +    VLFDSG++ S I+   V   G K       +++ +P GR     Q+C +  L 
Sbjct: 782  VNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSP-GRNIRATQICPEVNLR 840

Query: 82   VDDQELFADLVVL*MCGFDVILGMDWL 2
            +++ +  A  +VL     D+ILGMDWL
Sbjct: 841  IEEVDFLAKPIVLDSQSLDIILGMDWL 867


>gb|ABA98204.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1521

 Score =  143 bits (360), Expect = 4e-31
 Identities = 133/472 (28%), Positives = 194/472 (41%), Gaps = 29/472 (6%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+    +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 65   HQQMHQRMMQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 123

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 124  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 183

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+ KQL     
Sbjct: 184  KKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTKQLIS--- 240

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF + Q    R   + PGQ     
Sbjct: 241  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQFRSNQGSQHRPRFT-PGQQGGPT 293

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQ-GQTF*PQGRWMRFQQ 518
            T  +   RP+ P               G  +R  APRPP    Q GQ            Q
Sbjct: 294  TMIVRQHRPFNPSNFHQGTSGSQNHHGGQPNRGAAPRPPMAPAQSGQP----------AQ 343

Query: 517  VRPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQ 338
             +  T     S    C+ CG+  H    CP+ R+      Q  + +AS            
Sbjct: 344  AKKETGAKPGS----CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE---------- 389

Query: 337  ENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTG 158
                       +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R    
Sbjct: 390  -----------EAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELS 438

Query: 157  KMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
              + + TP G  +   Q      + +      A+L++L     DVILGMDWL
Sbjct: 439  TPMRVHTP-GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWL 489


>gb|AAN04919.1| Putative polyprotein [Oryza sativa Japonica Group]
            gi|31430212|gb|AAP52158.1| retrotransposon protein,
            putative, Ty3-gypsy subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1719

 Score =  143 bits (360), Expect = 4e-31
 Identities = 138/473 (29%), Positives = 198/473 (41%), Gaps = 30/473 (6%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+  + +QHQ FG         ++L + P  FS T  NP +A +WL   E  L
Sbjct: 312  HQQMHQRMMQHVEQQHQHFGPPPPQSKLPEFLGVRPPTFSSTT-NPMEANDWLHAIEKKL 370

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 371  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 430

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL    I
Sbjct: 431  KKREFRALHQGNRTVTEYLHEFNRLTRYAPEDVRTDAEKQEKFMAGLDDELTNQL----I 486

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRER-PPQFSARQDPAKRQMMSFPGQ---- 650
              Y     Y D   R +D     EDQ     R+R   QF A Q   +R   + PGQ    
Sbjct: 487  SGY-----YAD-FERLVDKAIRQEDQRNKMDRKRKAAQFRAHQGSHQRPRFT-PGQQGGP 539

Query: 649  -TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQ-GQTF*PQGRWMRFQ 521
             T  +   RP+ P               G  +R  APRPP    Q GQ            
Sbjct: 540  TTMIVRQHRPFNPSNFYQGTSDSQNHHGGQPNRGAAPRPPVASAQSGQP----------A 589

Query: 520  QVRPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETS 341
            Q +  T     S    C+ CG+  H    CP+ R+      Q  + +AS           
Sbjct: 590  QAKKETEAKPGS----CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE--------- 636

Query: 340  QENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLT 161
                        +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R   
Sbjct: 637  ------------EAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREEL 684

Query: 160  GKMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
               + + TP G  +   Q      + +    + A+L++L     DVILGMDWL
Sbjct: 685  STPMRVHTP-GNSSTSVQFSPSITIEIQRSPVLANLILLESKDLDVILGMDWL 736


>gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1850

 Score =  143 bits (360), Expect = 4e-31
 Identities = 128/472 (27%), Positives = 196/472 (41%), Gaps = 29/472 (6%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+  + +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 297  HQQMHQRMMQHVEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 355

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 356  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCCSFRKAQVPDGVVAQ 415

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 416  KKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 472

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSF-PGQ---- 650
              Y D     D   R  D   +M+       + +  QF  R  P   Q   F PGQ    
Sbjct: 473  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQF--RAPPGSHQRPRFAPGQQGGP 524

Query: 649  -TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQ 518
             T  +   RP+ P               G ++R  APRPP    Q     P  +  +   
Sbjct: 525  TTMIVRQHRPFNPSNFPQGASGSQNHHGGQSNRGAAPRPPMAPAQSG---PPAQSKKETG 581

Query: 517  VRPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQ 338
             +P +          C+ CG+  H    CP+ R+      Q  + +AS            
Sbjct: 582  AKPGS----------CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE---------- 621

Query: 337  ENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTG 158
                       +  A  +VV G   + +    VLFDSG+T S ++ + V   GL++    
Sbjct: 622  -----------EAQAAPEVVLGTFPVNSIPATVLFDSGATHSFVSKKFVGMHGLRKEELS 670

Query: 157  KMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
              + + TP G  +         ++ +      A+L++L     DVILGMDWL
Sbjct: 671  TPMRVHTP-GNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 721


>gb|AAL69439.1|AC098565_21 Putative polyprotein [Oryza sativa]
          Length = 1181

 Score =  143 bits (360), Expect = 4e-31
 Identities = 138/473 (29%), Positives = 198/473 (41%), Gaps = 30/473 (6%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+  + +QHQ FG         ++L + P  FS T  NP +A +WL   E  L
Sbjct: 65   HQQMHQRMMQHVEQQHQHFGPPPPQSKLPEFLGVRPPTFSSTT-NPMEANDWLHAIEKKL 123

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 124  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 183

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL    I
Sbjct: 184  KKREFRALHQGNRTVTEYLHEFNRLTRYAPEDVRTDAEKQEKFMAGLDDELTNQL----I 239

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRER-PPQFSARQDPAKRQMMSFPGQ---- 650
              Y     Y D   R +D     EDQ     R+R   QF A Q   +R   + PGQ    
Sbjct: 240  SGY-----YAD-FERLVDKAIRQEDQRNKMDRKRKAAQFRAHQGSHQRPRFT-PGQQGGP 292

Query: 649  -TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQ-GQTF*PQGRWMRFQ 521
             T  +   RP+ P               G  +R  APRPP    Q GQ            
Sbjct: 293  TTMIVRQHRPFNPSNFYQGTSDSQNHHGGQPNRGAAPRPPVASAQSGQP----------A 342

Query: 520  QVRPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETS 341
            Q +  T     S    C+ CG+  H    CP+ R+      Q  + +AS           
Sbjct: 343  QAKKETEAKPGS----CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE--------- 389

Query: 340  QENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLT 161
                        +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R   
Sbjct: 390  ------------EAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREEL 437

Query: 160  GKMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
               + + TP G  +   Q      + +    + A+L++L     DVILGMDWL
Sbjct: 438  STPMRVHTP-GNSSTSVQFSPSITIEIQRSPVLANLILLESKDLDVILGMDWL 489


>gb|ABA97433.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1672

 Score =  142 bits (359), Expect = 5e-31
 Identities = 130/471 (27%), Positives = 194/471 (41%), Gaps = 28/471 (5%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   ML    +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 255  HQQMHQRMLQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 313

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 314  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWVEFCRSFRKAQVPDGVVAQ 373

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  +++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 374  KKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 430

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + P Q     
Sbjct: 431  GDYADVERLVDKAIRQEDQRNKMDR------KRKAAQFRAPQGSHQRPRFA-PRQQGGPT 483

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQV 515
            T  +   RP+ P               G ++R  APRPP    Q     P  +  +    
Sbjct: 484  TMIVRQHRPFNPSNFPQGASGSQNHHGGQSNRGAAPRPPMAPAQSG---PPAQAKKETGA 540

Query: 514  RPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQE 335
            +P +          C+ CG+  H    CP+ R+      Q  + +AS             
Sbjct: 541  KPGS----------CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE----------- 579

Query: 334  NQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGK 155
                      +  A  +VV G   + +    VLFDSG+T S I+ + V   GL R     
Sbjct: 580  ----------EAQAAPEVVLGTFSINSIPATVLFDSGATHSFISKKFVGMHGLIREELST 629

Query: 154  MLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
             + + TP G  +   Q      + +      A+L++L     DVILGMDWL
Sbjct: 630  PMRVHTP-GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWL 679


>gb|AAP53928.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1364

 Score =  142 bits (359), Expect = 5e-31
 Identities = 128/471 (27%), Positives = 196/471 (41%), Gaps = 28/471 (5%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   ML    +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 65   HQQMHQRMLQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 123

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 124  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 183

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G  + + Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 184  KKREFRALHQGNRTATVYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 240

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF A Q   +R   + PGQ     
Sbjct: 241  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQFRADQGSHQRPRFT-PGQQGGPT 293

Query: 649  TFYIPPIRPWQP---------------GSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQV 515
            T  +   RP+ P               G ++R  APRPP    Q     P  +  +    
Sbjct: 294  TMIVRQHRPFNPSNFPQGASGSQNHHGGQSNRGAAPRPPMAPAQSG---PPAQAKKETGA 350

Query: 514  RPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQE 335
            +P +          C+ CG+  H    CP+ R+      Q  + +AS             
Sbjct: 351  KPGS----------CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE----------- 389

Query: 334  NQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGK 155
                      +  A  +VV G   + +    +LFDSG+T S I+ + V   GL++     
Sbjct: 390  ----------EAQAAPEVVLGTFPVNSIPATILFDSGATHSFISKKFVGMHGLRKEELST 439

Query: 154  MLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
            ++ + T LG  +         ++ +      A+L++L     DVILGMDWL
Sbjct: 440  LMRVYT-LGNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 489


>gb|ABA96609.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1556

 Score =  142 bits (357), Expect = 9e-31
 Identities = 125/452 (27%), Positives = 189/452 (41%), Gaps = 33/452 (7%)
 Frame = -2

Query: 1258 YLKLAPEEFSGTPPNPEKAEEWLQHAEHVLEHVSNDRDTWVKFVTYRFRGPSRDWWNAVI 1079
            +L+  P EFS T   P +A++WL+  +  L  V         + +++ RGP+ DWW    
Sbjct: 142  FLRSCPPEFSQTV-EPVEADDWLKDVDRKLNFVQCTPVEKTLYASHQLRGPAADWWENYC 200

Query: 1078 KA--EGGTITWDRFKVLFMDQYVPDSVRDRKFSEFMSLTKGGMSISAYNDKFLRLSRYGT 905
             A  E   I WD F   F   +VP+S  D K  EF  L +G  S++ Y  +F +L+RY  
Sbjct: 201  NAHPEPTNIAWDEFATAFRAAHVPESTIDMKKEEFNRLKQGNSSVNEYLSQFNKLARYAP 260

Query: 904  ELIATDEAKEKKFIRGLDSEMRKQLSCLRIKTYEDA*TYEDALNRPLDYEKEMEDQLVT* 725
            E + TD+ K +KF++G+   MR QL         D  T++  +N+ L  E   ++     
Sbjct: 261  EEVDTDKKKIRKFLKGIAVGMRLQLLA------HDFPTFQHMINKALLLEDARKEATEEY 314

Query: 724  VRERPPQFSARQDPAKRQMMSFPGQTFYIPPIRPWQPGSTSRPIAPRPPSVRPQGQTF*P 545
             + +          A R     P Q          QPG   RP   RP    PQ Q   P
Sbjct: 315  KKRKSNHQGNSSRGAPRPRYGQPMQYHQSVTQANHQPGYAPRPQMNRP---APQPQQRAP 371

Query: 544  QGRWMRFQQVRPATLTNSDSSFE--------RCWECGKTDHLRRDCPQLRKPPTGLSQQG 389
             G           T  NS +SF+        +C+ C +  H  R CP   + PT  +  G
Sbjct: 372  SGN----------TAPNSVTSFKSPQGPSAVQCFRCNRMGHYARQCP---RNPTN-TNSG 417

Query: 388  MVYASESA*ISTPETSQENQVFYTMMEGDGS-ATNQVVEGKILLFNHL------------ 248
                S +    TP  +    +  +   G GS A+N    G++   NH+            
Sbjct: 418  HANGSTA---RTPAPAAAQSLPSSQASGQGSRASNHFGRGRV---NHIQAETAQDAPDVV 471

Query: 247  ----------VHVLFDSGSTRSLINLRIVSELGLKRTLTGKMLVLATPLGRRNCPFQVCQ 98
                        VLFDSG++ S I+   V   G K       +++ +P GR     Q+C 
Sbjct: 472  MGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSP-GRNIRATQICP 530

Query: 97   KCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
            +  L +++ +  A  +VL     D+ILGMDWL
Sbjct: 531  EVNLRIEEVDFLAKPIVLDSQSLDIILGMDWL 562


>emb|CAH65904.1| H0207B04.5 [Oryza sativa Indica Group]
          Length = 1481

 Score =  142 bits (357), Expect = 9e-31
 Identities = 117/433 (27%), Positives = 187/433 (43%), Gaps = 14/433 (3%)
 Frame = -2

Query: 1258 YLKLAPEEFSGTPPNPEKAEEWLQHAEHVLEHVSNDRDTWVKFVTYRFRGPSRDWWNAVI 1079
            +L++ P  FS T  NP +A +WL   E  L+ +       V F +++  GP+ +WW+   
Sbjct: 66   FLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR 124

Query: 1078 KAE--GGTITWDRFKVLFMDQYVPDSVRDRKFSEFMSLTKGGMSISAYNDKFLRLSRYGT 905
            +    G  ITW  F   F   ++P  V   K  EF +L +G  S++ Y   F RL+RY  
Sbjct: 125  QGRVGGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 184

Query: 904  ELIATDEAKEKKFIRGLDSEMRKQLSCLRIKTYEDA*TYEDALNRPLDYEKEMEDQLVT* 725
            E + TDE +++KF+ GL+ E+   L     + ++      D   R  D    ME +    
Sbjct: 185  EDVRTDEERQEKFLEGLNDELSYTLMSTEFRDFQQ---LVDKAIRQEDKYNRMEQK---- 237

Query: 724  VRERPPQFSARQDPAKRQMMSFPGQTFYIPPIRPWQPGSTSRPIAPRPPSVRPQGQTF-- 551
             + R  QF A+Q   +R  +    Q    P     Q GS+S         VRPQ Q +  
Sbjct: 238  -KRRAAQFKAQQGSNQRPRLVTGSQVPSYP-----QVGSSS--------VVRPQRQFYNN 283

Query: 550  --*PQGRWMRFQQVRPATLTNSDSSFER--------CWECGKTDHLRRDCPQLRKPPTGL 401
                +G   R   VRPA     +    +        C+ CG   H    CP+ R+     
Sbjct: 284  NTGNRGNGNRNVVVRPAVTPTQNQPVRKEQGGKPVICFNCGDPGHYADKCPKPRRVKN-- 341

Query: 400  SQQGMVYASESA*ISTPETSQENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGS 221
                   AS ++ +  P+    +     +   +      VV G   + +    VLFDSG+
Sbjct: 342  -----APASTNSNVPAPKARVNH-----VAAAEAQNAPDVVLGTFPVNSIPATVLFDSGA 391

Query: 220  TRSLINLRIVSELGLKRTLTGKMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL* 41
            T S ++    S+ G++    G+ L++ TP G +    Q C    + +++    + L++L 
Sbjct: 392  THSFLSKSFASKHGMEVVSLGRPLLVNTP-GNQVFSTQYCPSVTIEIEEVPFPSSLILLE 450

Query: 40   MCGFDVILGMDWL 2
                DVILGMDWL
Sbjct: 451  SKDLDVILGMDWL 463


>gb|AAV31295.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1374

 Score =  142 bits (357), Expect = 9e-31
 Identities = 118/433 (27%), Positives = 187/433 (43%), Gaps = 14/433 (3%)
 Frame = -2

Query: 1258 YLKLAPEEFSGTPPNPEKAEEWLQHAEHVLEHVSNDRDTWVKFVTYRFRGPSRDWWNAVI 1079
            +L + P  FS T  NP +A +WL   E  L+ +       V F +++  GP+ +WW+   
Sbjct: 70   FLHVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR 128

Query: 1078 --KAEGGTITWDRFKVLFMDQYVPDSVRDRKFSEFMSLTKGGMSISAYNDKFLRLSRYGT 905
              +AEG  ITW  F   F   ++P  V   K  EF +L +G  S++ Y   F RL+RY  
Sbjct: 129  QGRAEGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 188

Query: 904  ELIATDEAKEKKFIRGLDSEMRKQLSCLRIKTYEDA*TYEDALNRPLDYEKEMEDQLVT* 725
            E + TDE +++KF+ GL+ E+   L     + ++      D   R  D    ME +    
Sbjct: 189  EDVRTDEERQEKFLEGLNDELSYALMSTDFRDFQQ---LVDKAIRQEDKYNRMEQK---- 241

Query: 724  VRERPPQFSARQDPAKRQMMSFPGQTFYIPPIRPWQPGSTSRPIAPRPPSVRPQGQTF-- 551
             + R  QF A+Q   +R  +    Q    P     Q GS+S         VRPQ Q +  
Sbjct: 242  -KRRAAQFKAQQGSNQRPRLVTGPQAPSYP-----QGGSSS--------VVRPQRQFYNN 287

Query: 550  --*PQGRWMRFQQVRPATLTNSDSSFER--------CWECGKTDHLRRDCPQLRKPPTGL 401
                +G   R   V PA  +  +    +        C+ CG   H    CP+ R+     
Sbjct: 288  NTGNRGNDNRNMVVHPAATSAQNQPVRKEQGSKTVTCFNCGDLGHYADKCPKPRRVKN-- 345

Query: 400  SQQGMVYASESA*ISTPETSQENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGS 221
                 V A  ++ +  P+    +     +   +      VV G   + +    VLFDSG+
Sbjct: 346  -----VPAPNNSNVPAPKARVNH-----VAAAEAQNAPDVVLGTFPVNSIPATVLFDSGA 395

Query: 220  TRSLINLRIVSELGLKRTLTGKMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL* 41
            T S ++    S  G++    G+ L++ TP G +    Q C    + +++    + L++L 
Sbjct: 396  THSFLSKSFASNHGMEVISLGRPLLVNTP-GNQAFSTQYCPSATIGIEEDPFPSSLILLE 454

Query: 40   MCGFDVILGMDWL 2
                DVILGMDWL
Sbjct: 455  SKDLDVILGMDWL 467


>gb|AAT85240.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1472

 Score =  142 bits (357), Expect = 9e-31
 Identities = 118/433 (27%), Positives = 187/433 (43%), Gaps = 14/433 (3%)
 Frame = -2

Query: 1258 YLKLAPEEFSGTPPNPEKAEEWLQHAEHVLEHVSNDRDTWVKFVTYRFRGPSRDWWNAVI 1079
            +L + P  FS T  NP +A +WL   E  L+ +       V F +++  GP+ +WW+   
Sbjct: 70   FLHVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR 128

Query: 1078 --KAEGGTITWDRFKVLFMDQYVPDSVRDRKFSEFMSLTKGGMSISAYNDKFLRLSRYGT 905
              +AEG  ITW  F   F   ++P  V   K  EF +L +G  S++ Y   F RL+RY  
Sbjct: 129  QGRAEGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 188

Query: 904  ELIATDEAKEKKFIRGLDSEMRKQLSCLRIKTYEDA*TYEDALNRPLDYEKEMEDQLVT* 725
            E + TDE +++KF+ GL+ E+   L     + ++      D   R  D    ME +    
Sbjct: 189  EDVRTDEERQEKFLEGLNDELSYALMSTDFRDFQQ---LVDKAIRQEDKYNRMEQK---- 241

Query: 724  VRERPPQFSARQDPAKRQMMSFPGQTFYIPPIRPWQPGSTSRPIAPRPPSVRPQGQTF-- 551
             + R  QF A+Q   +R  +    Q    P     Q GS+S         VRPQ Q +  
Sbjct: 242  -KRRAAQFKAQQGSNQRPRLVTGPQAPSYP-----QGGSSS--------VVRPQRQFYNN 287

Query: 550  --*PQGRWMRFQQVRPATLTNSDSSFER--------CWECGKTDHLRRDCPQLRKPPTGL 401
                +G   R   V PA  +  +    +        C+ CG   H    CP+ R+     
Sbjct: 288  NTGNRGNDNRNMVVHPAATSAQNQPVRKEQGSKTVTCFNCGDLGHYADKCPKPRRVKN-- 345

Query: 400  SQQGMVYASESA*ISTPETSQENQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGS 221
                 V A  ++ +  P+    +     +   +      VV G   + +    VLFDSG+
Sbjct: 346  -----VPAPNNSNVPAPKARVNH-----VAAAEAQNAPDVVLGTFPVNSIPATVLFDSGA 395

Query: 220  TRSLINLRIVSELGLKRTLTGKMLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL* 41
            T S ++    S  G++    G+ L++ TP G +    Q C    + +++    + L++L 
Sbjct: 396  THSFLSKSFASNHGMEVISLGRPLLVNTP-GNQAFSTQYCPSATIGIEEDPFPSSLILLE 454

Query: 40   MCGFDVILGMDWL 2
                DVILGMDWL
Sbjct: 455  SKDLDVILGMDWL 467


>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa Japonica Group]
          Length = 1827

 Score =  142 bits (357), Expect = 9e-31
 Identities = 129/471 (27%), Positives = 194/471 (41%), Gaps = 28/471 (5%)
 Frame = -2

Query: 1330 HAPMPDDMLVPLWKQHQ-FG-----QLFLQYLKLAPEEFSGTPPNPEKAEEWLQHAEHVL 1169
            H  M   M+    +QHQ FG         ++L++ P  FS T  NP +A +WL   E  L
Sbjct: 371  HQQMHQRMMQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTT-NPMEANDWLHAIEKKL 429

Query: 1168 EHVSNDRDTWVKFVTYRFRGPSRDWWN--AVIKAEGGTITWDRFKVLFMDQYVPDSVRDR 995
              +  +    V F T++ +GP+  WW+     +  G  +TW  F   F    VPD V  +
Sbjct: 430  NLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQ 489

Query: 994  KFSEFMSLTKGGMSISAYNDKFLRLSRYGTELIATDEAKEKKFIRGLDSEMRKQLSCLRI 815
            K  EF +L +G M+++ Y  +F RL+RY  E + TD  K++KF+ GLD E+  QL     
Sbjct: 490  KKREFRALHQGNMTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS--- 546

Query: 814  KTYEDA*TYEDALNRPLDYEKEMEDQLVT*VRERPPQFSARQDPAKRQMMSFPGQ----- 650
              Y D     D   R  D   +M+       + +  QF + Q    R   + PGQ     
Sbjct: 547  GDYADFERLVDKAIRQEDQRNKMDR------KRKAAQFRSNQGSQHRPRFT-PGQQGGPT 599

Query: 649  TFYIPPIRPW---------------QPGSTSRPIAPRPPSVRPQGQTF*PQGRWMRFQQV 515
            T  +   RP+               Q G  +R  APRPP    Q           +  Q 
Sbjct: 600  TMIVRQHRPFNSSNFHQGTSGSQNHQGGQPNRGAAPRPPMAPAQS---------AQPAQA 650

Query: 514  RPATLTNSDSSFERCWECGKTDHLRRDCPQLRKPPTGLSQQGMVYASESA*ISTPETSQE 335
            +  T     S    C+ CG+  H    CP+ R+      Q  + +AS             
Sbjct: 651  KKETGAKPGS----CFNCGELGHFADKCPKPRRAGPRFIQARVNHASAE----------- 695

Query: 334  NQVFYTMMEGDGSATNQVVEGKILLFNHLVHVLFDSGSTRSLINLRIVSELGLKRTLTGK 155
                      +  A  +VV G   + +    VLFDSG+T S I+ + V   GL++     
Sbjct: 696  ----------EAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKDELST 745

Query: 154  MLVLATPLGRRNCPFQVCQKCVLMVDDQELFADLVVL*MCGFDVILGMDWL 2
             + + TP G  +         ++ +      A+L++L     DVILGMDWL
Sbjct: 746  PMRVRTP-GNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 795


Top