BLASTX nr result

ID: Papaver25_contig00043600 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00043600
         (486 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004296842.1| PREDICTED: pentatricopeptide repeat-containi...    62   6e-08
ref|XP_007142404.1| hypothetical protein PHAVU_008G277600g, part...    57   2e-06
ref|XP_002314384.2| hypothetical protein POPTR_0010s01780g [Popu...    56   6e-06
ref|XP_007035595.1| Pentatricopeptide repeat-containing protein,...    56   6e-06
ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containi...    55   8e-06

>ref|XP_004296842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Fragaria vesca subsp. vesca]
          Length = 896

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
 Frame = -2

Query: 314 LLNSRGIFRSDIKHWNIDTLHREFSSL-HXXXXXXXXXXXSPVCGTTNQACTRIKDVRPV 138
           LL ++GI   D    +I    + FSSL +           S V G  +    +++ VR V
Sbjct: 2   LLRNQGIRHLD-GFCSIYNFSKRFSSLPNGTSSGVDGKVGSSVGGVNHDNSGKVEGVRQV 60

Query: 137 VDEVCRILGSGSWGHAVEDGLSSLDQKHQPESVNGVLKRLENV 9
           VD VC++L  G WG A+E+ LS+LD+K QPE V GVL+RL++V
Sbjct: 61  VDVVCQVLEGGPWGPALENALSALDEKPQPELVIGVLRRLKDV 103


>ref|XP_007142404.1| hypothetical protein PHAVU_008G277600g, partial [Phaseolus
           vulgaris] gi|561015537|gb|ESW14398.1| hypothetical
           protein PHAVU_008G277600g, partial [Phaseolus vulgaris]
          Length = 911

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 24/51 (47%), Positives = 39/51 (76%)
 Frame = -2

Query: 155 KDVRPVVDEVCRILGSGSWGHAVEDGLSSLDQKHQPESVNGVLKRLENVKL 3
           + +R +V +VCR+L +G WG A+ED L++ D   QPESV GV++RL++V++
Sbjct: 70  ESMRKIVHDVCRVLDTGPWGPALEDALNTFDDMPQPESVVGVIRRLKHVQV 120


>ref|XP_002314384.2| hypothetical protein POPTR_0010s01780g [Populus trichocarpa]
           gi|550328882|gb|EEF00555.2| hypothetical protein
           POPTR_0010s01780g [Populus trichocarpa]
          Length = 898

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = -2

Query: 185 GTTNQACTRIKDVRPVVDEVCRILGSGSWGHAVEDGLSSLDQKHQPESVNGVLKRLENV 9
           G   +       VR  VD+VC +L SGSWG ++E+ LS  ++K QPE V GVL+RL++V
Sbjct: 47  GVNQENSRNFDGVRRGVDDVCHVLESGSWGPSLENSLSMFNEKPQPELVIGVLRRLKDV 105


>ref|XP_007035595.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
           cacao] gi|508714624|gb|EOY06521.1| Pentatricopeptide
           repeat-containing protein, putative [Theobroma cacao]
          Length = 901

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 28/54 (51%), Positives = 39/54 (72%)
 Frame = -2

Query: 164 TRIKDVRPVVDEVCRILGSGSWGHAVEDGLSSLDQKHQPESVNGVLKRLENVKL 3
           +RI+ VR  VD+VC +L SG WG A+E  LS L++K QP  V GVL++L++V L
Sbjct: 57  SRIEGVRKEVDDVCCVLESGPWGPALEHALSLLNEKPQPGLVIGVLRKLKDVNL 110


>ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 36/97 (37%), Positives = 50/97 (51%)
 Frame = -2

Query: 302 RGIFRSDIKHWNIDTLHREFSSLHXXXXXXXXXXXSPVCGTTNQACTRIKDVRPVVDEVC 123
           R IFRS  K   I ++ ++FSS                 G   +     + +R  VD+VC
Sbjct: 8   RQIFRSFPKGCYISSICKKFSSSCNGPSEVDGKVVFSADGVDKKIPRNNEGIRKGVDDVC 67

Query: 122 RILGSGSWGHAVEDGLSSLDQKHQPESVNGVLKRLEN 12
            IL SG WG  +E+ LS+L +K  PE V GVLKRL++
Sbjct: 68  CILESGPWGPTLENSLSALGEKPLPELVIGVLKRLKD 104


Top