BLASTX nr result
ID: Papaver25_contig00038919
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver25_contig00038919
(721 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006350058.1| PREDICTED: DNA-directed RNA polymerase II su... 51 2e-06
gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotia... 50 2e-06
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 49 3e-06
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 49 3e-06
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A... 49 3e-06
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p... 49 3e-06
gb|AAY85235.1| RNA polymerase II second largest subunit [Tetrace... 49 3e-06
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu... 49 3e-06
gb|AAY85208.1| RNA polymerase II second largest subunit [Euptele... 49 3e-06
gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbert... 49 3e-06
gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi... 49 3e-06
gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxi... 49 3e-06
gb|AAY85204.1| RNA polymerase II second largest subunit [Dilleni... 49 3e-06
gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo... 49 3e-06
gb|AAY89339.1| RNA polymerase II second largest subunit [Berberi... 49 3e-06
gb|AAY85206.1| RNA polymerase II second largest subunit [Embothr... 49 3e-06
gb|AAY85211.1| RNA polymerase II second largest subunit [Gunnera... 49 3e-06
gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphae... 49 3e-06
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca... 48 4e-06
gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhodode... 48 4e-06
>ref|XP_006350058.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Solanum tuberosum]
Length = 1203
Score = 50.8 bits (120), Expect(2) = 2e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH G REYC K+F FGY++
Sbjct: 357 IKYAKEILQREMLPHVGTREYCETKKAFYFGYII 390
Score = 27.3 bits (59), Expect(2) = 2e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VG T E+
Sbjct: 337 VALDYIGKRGSTVGFTREK 355
>gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1203
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH G REYC K++ FGY++
Sbjct: 354 IKYAKEILQREMLPHVGTREYCETKKAYYFGYII 387
Score = 28.5 bits (62), Expect(2) = 2e-06
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VG T ER
Sbjct: 334 VALDYIGKRGSTVGFTRER 352
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 349 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 382
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 329 VALDYIGKRGSTVGVTKEK 347
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 342 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 375
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 322 VALDYIGKRGSTVGVTREK 340
>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
gi|548863150|gb|ERN20505.1| hypothetical protein
AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 336 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 369
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 316 VALDYIGKRGSTVGVTKEK 334
>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
Length = 951
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
Length = 951
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
Length = 923
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 208 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 241
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 188 VALDYIGKRGSTVGVTREK 206
>gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
Length = 874
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
Length = 873
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
Length = 873
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
Length = 873
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
Length = 868
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 231 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 264
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 211 VALDYIGKRGSTVGVTREK 229
>gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
Length = 865
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 228 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 261
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 208 VALDYIGKRGSTVGVTREK 226
>gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
Length = 853
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAY85206.1| RNA polymerase II second largest subunit [Embothrium coccineum]
Length = 706
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTREK 234
>gb|AAY85211.1| RNA polymerase II second largest subunit [Gunnera chilensis]
Length = 453
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTKEK 234
>gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphaea colorata]
Length = 431
Score = 48.5 bits (114), Expect(2) = 3e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 236 IKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 269
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 216 VALDYIGKRGSTVGVTKEK 234
>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 1213
Score = 48.1 bits (113), Expect(2) = 4e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
I+YAK ILQ EMLPH GV EYC K++ FGY++
Sbjct: 344 IKYAKDILQKEMLPHVGVGEYCETKKAYYFGYII 377
Score = 29.3 bits (64), Expect(2) = 4e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 324 VALDYIGKRGSTVGVTKEK 342
>gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1207
Score = 48.1 bits (113), Expect(2) = 4e-06
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -1
Query: 391 IRYAKHILQIEMLPHAGVREYC*DGKSFNFGYVL 290
IRYAK ILQ EMLPH G EYC K++ FGY++
Sbjct: 358 IRYAKEILQREMLPHVGTGEYCETKKAYYFGYII 391
Score = 29.3 bits (64), Expect(2) = 4e-06
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 543 IALDYIGKGRSVVGVTTER 487
+ALDYIGK S VGVT E+
Sbjct: 338 VALDYIGKRGSTVGVTKEK 356